Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NCi	12267	2023-02-20	2021-01-28	3.55	3.67	3.44	4.0	0.012	1.57	2.0	0.10	15.57	0.01	2.481	0.35	0.00	8.9	91.1	0.0	-3.74	0.68	0.59	1.81	4.0	0.004	0.64	2.0	0.05	14.88	0.00	1.935	18.73	1.48	13.7	86.3	0.0	-4.29	1.57	0.67	0.62	0.22	11292	816	12	0	0	0	5796	logfile
✔	6YUF	10930	2023-02-23	2020-04-27	3.94	4.30	4.21	4.1	0.018	1.71	8.0	0.08	18.03	0.01	2.033	13.39	0.24	8.9	91.1	0.0	-3.37	0.77	0.75	0.41	4.2	0.003	0.77	0.0	0.04	19.06	0.00	2.048	15.09	0.34	7.5	92.5	0.0	-0.98	0.64	0.78	0.77	0.22	19528	2264	8	64	4	0	0	logfile
✔	7K8A	22724	2023-02-19	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.003	0.78	0.0	0.04	15.86	0.01	2.225	15.74	0.34	4.6	95.3	0.1	-0.56	0.46	0.42	0.55	0.22	5513	723	1	0	0	0	0	logfile
✔	7NZM	12665	2023-02-19	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	13.92	0.01	1.774	11.10	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.73	0.0	0.04	14.90	0.00	2.042	16.85	0.10	2.6	97.4	0.0	0.40	1.50	0.95	0.85	0.23	9109	1157	8	0	4	0	0	logfile
✔	7YG0	33803	2023-02-20	2022-07-09	3.75	4.38	3.91	6.5	0.005	0.93	1.0	0.05	14.36	0.00	2.222	25.32	1.19	8.0	92.0	0.0	-1.07	0.59	0.54	0.45	6.5	0.004	0.95	0.0	0.05	15.92	0.00	2.114	27.70	0.49	5.4	94.5	0.1	-0.73	2.16	0.67	0.73	0.24	13336	1708	2	0	0	0	0	logfile
✔	7QFP	13946	2023-02-19	2021-12-06	3.7	4.43	3.74	4.1	0.007	1.11	4.0	0.08	15.77	0.01	2.167	19.15	4.14	12.5	86.9	0.6	-4.48	0.84	0.72	0.85	4.1	0.003	0.77	0.0	0.05	16.83	0.00	2.118	16.48	0.44	11.9	88.0	0.1	-2.89	0.77	0.85	0.76	0.24	9996	1233	1	0	0	0	0	logfile
✔	7W0C	32238	2023-02-21	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	13.50	0.00	2.105	14.31	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	3.8	0.003	0.63	0.0	0.04	15.18	0.00	2.147	16.00	0.15	4.3	95.6	0.1	-0.03	0.46	0.86	0.74	0.26	13663	1492	5	72	2	0	0	logfile
✔	8CSA	26961	2023-02-24	2022-05-12	3.84	4.24	3.87	3.9	0.012	1.75	3.0	0.09	13.74	0.02	2.527	0.19	1.18	6.0	93.8	0.2	-1.46	0.82	0.78	0.63	3.9	0.004	0.67	0.0	0.04	15.01	0.00	2.101	12.64	0.23	4.2	95.8	0.0	0.02	1.66	0.83	0.79	0.26	23442	3003	3	0	0	0	0	logfile
✔	6XSS	22305	2023-02-18	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.80	0.0	0.04	16.96	0.00	2.251	16.62	0.49	0.9	99.1	0.0	2.42	1.33	0.74	0.79	0.26	8048	1040	4	0	0	0	0	logfile
✔	6VQU	21357	2023-02-22	2020-02-05	3.88	4.99	3.94	4.1	0.007	0.94	0.0	0.06	14.62	0.01	2.276	5.09	1.70	3.4	96.6	0.0	-2.26	0.73	0.86	0.46	4.1	0.003	0.72	0.0	0.04	14.96	0.00	2.196	12.02	0.32	2.6	97.4	0.0	2.01	1.05	0.73	0.88	0.26	9156	1178	2	0	0	0	0	logfile
✔	8DGi	27423	2023-02-21	2022-06-23	3.94	4.27	4.04	4.1	0.005	1.16	4.0	0.06	15.93	0.01	2.263	8.89	0.67	5.9	93.8	0.3	-2.32	0.67	0.52	0.27	4.1	0.003	0.75	0.0	0.04	16.38	0.00	2.110	20.11	0.53	6.1	93.8	0.1	-0.44	0.60	0.66	0.51	0.27	13580	1690	2	0	0	0	0	logfile
✔	6UKT	20812	2023-02-18	2019-10-05	3.87	4.71	—	4.3	0.007	1.03	0.0	0.06	16.89	0.01	2.247	10.29	0.46	15.8	84.2	0.0	-5.03	0.89	0.80	0.36	4.3	0.003	0.71	0.0	0.04	17.55	0.00	2.116	15.46	0.11	12.1	87.9	0.0	-2.31	0.57	0.90	0.84	0.27	8979	1204	6	0	0	0	0	logfile
✔	7RX0	24721	2023-02-19	2021-08-20	3.89	4.63	—	4.5	0.006	0.85	1.0	0.05	15.16	0.00	1.666	29.17	0.00	7.1	92.9	0.0	-2.61	0.60	0.82	0.77	4.5	0.004	0.85	0.0	0.04	17.06	0.00	1.959	22.99	0.51	5.6	94.4	0.0	-0.68	0.81	0.60	0.82	0.27	9673	1182	7	0	83	0	0	logfile
✔	6H5i	0140	2023-02-21	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.7	0.003	0.67	0.0	0.04	15.36	0.00	2.097	14.22	0.32	4.1	95.9	0.0	1.46	1.26	0.37	0.24	0.27	43900	5392	26	0	0	0	0	logfile
✔	6AHR	9626	2023-02-26	2018-08-20	3.92	4.05	—	3.9	0.004	0.96	0.0	0.05	12.84	0.01	1.742	9.87	0.13	10.2	89.6	0.3	-4.23	0.71	0.61	0.54	3.9	0.005	0.87	0.0	0.04	16.28	0.01	2.063	22.59	0.79	12.1	87.8	0.1	-2.17	2.79	0.78	0.76	0.28	27851	2595	13	341	1	0	0	logfile
✔	7Y5G	33619	2023-02-17	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.53	0.0	0.04	15.35	0.00	2.030	5.10	0.38	1.0	99.0	0.0	1.53	0.65	0.65	0.75	0.28	4736	604	4	0	6	0	0	logfile
✔	7WTA	32773	2023-02-23	2022-02-04	3.9	6.12	—	3.5	0.008	0.82	0.0	0.04	13.23	0.00	2.171	19.56	0.00	8.2	91.8	0.0	-0.51	0.89	0.81	0.46	3.5	0.004	0.78	0.0	0.04	14.73	0.00	2.043	25.59	0.27	9.2	90.7	0.1	-0.75	0.46	0.90	0.82	0.29	21080	2736	8	0	4	0	0	logfile
✔	6Q2S	20579	2023-02-21	2019-08-08	3.8	4.19	—	4.0	0.007	1.05	0.0	0.06	8.58	0.01	1.366	3.84	0.13	7.6	92.4	0.0	-4.58	0.64	0.51	0.55	4.0	0.004	0.83	0.0	0.05	14.54	0.00	2.024	18.41	0.66	7.3	92.7	0.0	-2.28	1.89	0.74	0.71	0.30	13726	1734	10	0	22	0	0	logfile
✔	6FLQ	4275	2023-02-27	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.8	0.009	1.33	0.0	0.06	17.55	0.01	1.844	30.47	0.70	13.4	86.4	0.2	-2.72	2.16	0.28	0.24	0.30	30201	3868	10	91	3	0	0	logfile
✔	6XWQ	10635	2023-02-19	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.80	0.0	0.04	15.44	0.00	2.167	14.29	0.30	3.8	96.2	0.0	1.16	1.16	0.72	0.84	0.30	9572	1281	6	0	0	0	0	logfile

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