Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MU2	9244	2022-12-22	2018-10-22	3.9	4.63	—	4.5	0.012	2.05	157.0	0.17	15.10	0.01	1.078	54.14	14.66	11.0	87.3	1.7	-1.58	0.70	0.68	0.40	4.5	0.008	1.13	3.0	0.06	15.84	0.01	1.996	35.83	2.85	12.2	87.3	0.5	-0.80	1.02	0.73	0.73	0.32	51404	8680	4	0	0	0	0	logfile
✔	7QPG	14120	2022-12-12	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	7.04	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.3	0.002	0.65	0.0	0.04	12.86	0.00	2.133	10.25	0.15	2.8	97.2	0.0	1.30	0.80	0.86	0.72	0.32	57164	7156	6	0	0	0	0	logfile
✔	7QFP	13946	2022-12-12	2021-12-06	3.7	4.43	3.74	4.1	0.007	1.11	4.0	0.08	15.77	0.01	2.167	19.15	4.14	12.5	86.9	0.6	-4.48	0.84	0.72	0.85	4.1	0.003	0.78	0.0	0.05	16.86	0.00	2.104	17.43	0.44	12.7	87.2	0.1	-2.87	0.80	0.85	0.76	0.32	9996	1233	1	0	0	0	0	logfile
✔	7VZF	32227	2022-12-11	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.83	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.91	0.0	0.05	18.86	0.00	2.102	13.65	4.61	18.2	81.8	0.0	-4.30	1.96	0.37	0.63	0.33	2628	363	3	0	0	0	0	logfile
✔	6Y7C	10713	2022-12-15	2020-02-28	3.8	5.42	3.84	2.8	0.015	1.44	1.0	0.06	18.61	0.01	0.193	10.37	1.00	14.3	85.4	0.3	-5.44	0.89	0.71	0.41	2.6	0.013	0.96	0.0	0.05	19.10	0.01	1.966	42.09	0.50	16.7	83.1	0.2	-4.01	2.61	0.92	0.79	0.34	79690	5381	34	1735	0	0	0	logfile
✔	6UKT	20812	2022-12-12	2019-10-05	3.87	4.71	—	4.3	0.007	1.03	0.0	0.06	16.89	0.01	2.247	10.29	0.46	15.8	84.2	0.0	-5.03	0.89	0.80	0.36	4.3	0.003	0.69	0.0	0.04	17.58	0.00	2.134	13.73	0.23	11.6	88.4	0.0	-2.46	0.54	0.90	0.84	0.34	8979	1204	6	0	0	0	0	logfile
✔	6PMi	20394	2022-12-12	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.38	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.004	0.70	0.0	0.04	17.35	0.00	1.817	21.64	0.41	9.6	90.3	0.1	-2.29	1.36	0.86	0.77	0.35	57985	3453	10	110	4	0	28610	logfile
✔	6ZiT	11229	2022-12-14	2020-06-26	3.49	3.68	4.20	3.5	0.005	0.74	0.0	0.04	15.19	0.01	1.968	23.60	0.00	10.6	89.4	0.0	-1.92	0.49	0.72	0.69	3.5	0.003	0.60	0.0	0.04	16.56	0.00	1.970	14.07	0.28	5.1	94.9	0.0	0.29	0.53	0.49	0.73	0.35	20646	1300	15	0	0	0	10446	logfile
✔	7o7R	12754	2022-12-20	2021-04-13	3.9	4.51	—	4.3	0.013	1.32	8.0	0.07	16.26	0.01	1.912	21.03	1.07	18.3	81.4	0.3	-5.78	0.83	0.75	0.13	4.3	0.004	0.96	0.0	0.05	17.08	0.01	1.975	22.06	0.45	9.7	90.2	0.1	-3.30	0.87	0.83	0.76	0.36	40530	5126	16	0	40	0	0	logfile
✔	7MVU	24056	2022-12-15	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.1	0.002	0.58	0.0	0.03	11.85	0.00	1.937	10.96	0.22	2.9	97.1	0.0	2.75	2.06	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile
✔	7RX0	24721	2022-12-12	2021-08-20	3.89	4.63	—	4.5	0.006	0.85	1.0	0.05	15.16	0.00	1.666	29.33	0.00	7.1	92.9	0.0	-2.61	0.60	0.82	0.77	4.5	0.004	0.87	0.0	0.04	16.93	0.01	1.982	23.31	1.21	5.0	95.0	0.0	-0.69	1.54	0.59	0.82	0.36	9673	1182	7	0	83	0	0	logfile
✔	6RED	4850	2022-12-18	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.48	0.01	2.140	5.89	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.003	0.69	0.0	0.04	15.73	0.00	1.878	15.90	1.91	4.2	95.7	0.1	-0.48	0.94	0.23	0.13	0.37	33899	4503	25	0	10	0	0	logfile
✔	7o6B	12737	2022-12-13	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.002	0.55	0.0	0.04	14.05	0.00	2.012	9.95	0.38	4.0	96.0	0.0	0.60	1.16	0.76	0.70	0.37	14200	879	1	0	0	0	7040	logfile
✔	7VQ4	32085	2022-12-11	2021-10-19	3.2	3.54	—	3.6	0.007	0.74	0.0	0.04	16.10	0.00	2.155	9.75	2.30	6.6	93.4	0.0	-1.96	0.61	0.79	1.10	3.7	0.003	0.69	0.0	0.04	17.23	0.00	2.154	9.28	0.57	4.3	95.7	0.0	2.97	1.30	0.59	0.79	0.37	6306	800	2	0	0	0	0	logfile
✔	7PC2	13316	2022-12-15	2021-08-03	2.8	3.39	—	6.5	0.033	1.53	5.0	0.05	15.16	0.01	1.809	9.01	1.49	7.8	92.2	0.0	-3.81	0.43	0.05	-0.14	3.1	0.011	0.95	0.0	0.05	16.36	0.01	2.036	16.86	2.94	6.3	93.7	0.0	-1.20	1.45	0.59	0.38	0.38	27063	3093	68	0	210	0	0	logfile
✔	7S37	24818	2022-12-12	2021-09-04	3.2	3.10	3.27	2.3	0.006	1.04	0.0	0.05	12.76	0.01	2.211	4.71	0.11	3.7	96.3	0.0	-1.48	0.74	0.62	0.31	2.2	0.003	0.67	0.0	0.04	15.86	0.00	2.085	16.35	0.33	3.2	96.8	0.0	0.16	1.47	0.77	0.67	0.38	9392	1033	2	46	0	0	0	logfile
✔	6VQU	21357	2022-12-14	2020-02-05	3.88	4.99	3.94	4.1	0.007	0.94	0.0	0.06	14.62	0.01	2.276	5.25	1.70	3.4	96.6	0.0	-2.26	0.73	0.86	0.46	4.1	0.003	0.70	0.0	0.04	15.01	0.00	2.196	11.37	0.21	2.5	97.5	0.0	2.12	1.05	0.73	0.88	0.38	9156	1178	2	0	0	0	0	logfile
✔	6TA3	10421	2022-12-12	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.77	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.86	0.0	0.04	17.60	0.01	1.333	27.41	0.78	3.1	96.9	0.0	-0.05	2.41	0.77	0.73	0.40	9491	1201	6	0	5	0	0	logfile
✔	7CG4	30350	2022-12-12	2020-06-30	3.6	4.04	—	3.9	0.003	0.69	0.0	0.04	14.90	0.00	2.192	7.47	0.34	5.1	94.9	0.0	-2.88	0.49	0.77	0.53	4.0	0.004	0.87	0.0	0.04	17.37	0.00	2.192	10.28	0.34	5.1	94.9	0.1	1.28	1.95	0.45	0.76	0.41	10943	1419	11	0	0	0	0	logfile
✔	5LKH	4068	2022-12-19	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.25	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.003	0.81	0.0	0.04	15.64	0.00	2.120	25.20	0.34	6.3	93.7	0.0	-0.80	2.12	0.50	0.56	0.41	37345	4740	5	0	0	0	0	logfile

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