Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A24	11615	2021-10-07	2020-08-16	3.8	3.92	—	3.8	0.009	1.17	33.0	1.08	14.86	0.01	0.850	22.54	2.62	9.6	90.1	0.3	-3.10	0.53	0.47	0.12	3.8	0.013	1.94	2.0	0.33	17.66	0.01	1.674	40.33	0.28	10.7	89.2	0.1	-2.57	1.26	0.60	0.62	0.34	49497	6253	46	0	17	0	0	logfile
✔	6o9J	0661	2021-10-07	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	54.15	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.011	1.07	6.0	0.05	17.16	0.01	1.337	30.32	0.73	22.7	74.6	2.6	-4.64	1.28	0.79	0.76	0.34	142682	5731	53	4564	0	0	0	logfile
✔	6X2N	22012	2021-10-06	2020-05-20	3.9	4.07	—	3.9	0.009	1.21	1.0	0.07	17.28	0.01	2.024	10.27	0.28	8.2	91.6	0.3	-2.89	0.76	0.77	0.56	3.9	0.005	0.77	0.0	0.04	18.39	0.01	1.978	19.15	0.36	8.1	91.9	0.0	-1.34	1.91	0.77	0.78	0.34	36079	4316	11	113	4	0	0	logfile
✔	5KPW	8281	2021-10-12	2016-07-05	3.9	5.27	4.08	3.8	0.007	1.11	5.0	0.09	13.85	0.01	2.191	23.72	0.79	12.9	81.4	5.7	-4.53	0.90	0.77	0.51	3.9	0.004	0.71	0.0	0.04	16.21	0.00	2.006	30.10	0.81	10.6	88.6	0.8	-2.12	1.81	0.95	0.90	0.34	154603	6623	59	4812	0	0	0	logfile
✔	7KY5	23068	2021-10-04	2020-12-07	3.98	4.52	—	4.3	0.010	0.72	0.0	0.24	12.96	0.01	2.200	16.32	0.07	6.6	93.4	0.0	-1.06	0.72	0.75	0.32	4.3	0.003	0.82	0.0	0.08	15.40	0.00	1.699	19.58	0.74	6.4	93.6	0.0	-1.10	1.09	0.73	0.78	0.34	12483	1534	6	0	15	0	0	logfile
✔	6PMi	20394	2021-10-03	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.17	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.0	0.004	0.73	0.0	0.04	17.64	0.00	1.507	22.62	0.54	10.7	89.1	0.1	-2.25	1.76	0.86	0.78	0.35	57985	3453	10	110	4	0	28610	logfile
✔	6LTJ	0974	2021-10-06	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	13.82	2.63	6.4	93.3	0.3	-3.67	0.46	0.09	0.04	9.2	0.011	1.05	2.0	0.04	22.30	0.01	1.531	27.04	0.22	4.3	95.7	0.0	-0.12	1.62	0.59	0.28	0.35	34283	3656	21	238	1	0	0	logfile
✔	6EU2	3957	2021-10-07	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.05	0.40	13.0	86.5	0.5	-5.22	0.27	0.05	0.18	3.4	0.008	0.98	0.0	0.04	15.47	0.01	2.016	12.64	0.42	11.2	88.6	0.3	-2.28	1.55	0.62	0.59	0.35	38329	4825	22	0	7	0	0	logfile
✔	6oUo	20204	2021-10-09	2019-05-05	3.7	4.99	—	3.3	0.007	0.83	1.0	0.04	15.93	0.02	1.584	12.03	0.36	5.1	94.8	0.1	-3.86	0.89	0.75	0.10	3.3	0.003	0.73	0.0	0.03	17.04	0.01	1.913	30.50	0.69	5.7	94.3	0.0	-1.55	3.94	0.92	0.84	0.36	146867	6028	61	4642	14	0	0	logfile
✔	5VZL	8749	2021-10-04	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.011	1.14	1.0	0.04	15.64	0.00	1.217	12.55	0.25	5.7	94.3	0.0	-1.15	1.41	0.39	0.20	0.37	13915	1451	3	115	1	0	0	logfile
✔	7NZM	12665	2021-10-03	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	13.92	0.01	1.774	10.99	0.00	3.8	96.2	0.0	-1.56	0.77	0.52	-0.04	4.3	0.004	0.76	0.0	0.04	15.19	0.00	1.803	21.37	0.10	3.1	96.9	0.0	0.12	1.62	0.95	0.85	0.37	9109	1157	8	0	4	0	0	logfile
✔	5G2X	3331	2021-10-04	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.00	0.0	0.05	20.64	0.01	1.926	44.26	1.13	23.3	75.6	1.1	-5.27	2.46	0.80	0.67	0.38	19072	487	3	704	0	0	0	logfile
✔	6UKT	20812	2021-10-03	2019-10-05	3.87	4.71	—	4.3	0.007	1.02	0.0	0.06	16.90	0.01	2.247	10.29	0.46	15.8	84.2	0.0	-5.03	0.89	0.80	0.36	4.3	0.003	0.73	0.0	0.04	17.85	0.01	2.185	13.97	0.69	11.3	88.7	0.0	-2.41	0.62	0.90	0.84	0.38	8979	1204	6	0	0	0	0	logfile
✔	6iXB	9745	2021-10-05	2018-12-09	3.55	5.22	—	3.8	0.008	1.07	3.0	0.09	14.51	0.01	1.838	33.71	7.71	4.9	95.1	0.0	-3.36	0.91	0.82	0.18	3.9	0.003	0.66	0.0	0.05	15.24	0.00	2.125	17.12	6.01	7.7	92.3	0.0	-1.63	0.62	0.91	0.85	0.39	22404	2892	12	0	78	0	0	logfile
✔	3JAD	6344	2021-10-04	2015-06-08	3.9	2.16	—	3.8	0.016	1.42	0.0	0.07	8.58	0.01	2.250	16.45	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	2.7	0.003	0.86	0.0	0.05	12.92	0.00	2.159	16.05	0.17	4.1	95.9	0.0	0.76	1.26	0.70	0.77	0.39	12705	1685	10	0	15	0	0	logfile
✔	7BW8	30230	2021-10-03	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	48.38	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.92	0.0	0.05	17.95	0.01	2.190	18.20	0.74	11.3	88.7	0.0	-3.02	2.10	0.68	0.63	0.40	6021	737	3	0	0	0	0	logfile
✔	6SXA	10337	2021-10-03	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	14.89	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.81	0.0	0.04	14.91	0.00	2.251	11.17	0.00	4.9	95.0	0.1	-0.29	1.81	0.91	0.83	0.41	7014	943	2	0	0	0	0	logfile
✔	7M18	23615	2021-10-03	2021-03-12	3.38	4.09	—	4.1	0.007	1.50	0.0	0.17	17.26	0.01	1.728	23.15	0.28	10.4	89.3	0.3	-2.48	0.74	0.73	0.41	4.1	0.013	1.32	4.0	0.05	17.51	0.01	2.060	19.26	0.44	8.7	91.1	0.1	-2.01	0.56	0.75	0.75	0.41	54064	6904	32	8	16	0	0	logfile
✔	6Qi8	4552	2021-10-04	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.012	1.37	1.0	0.05	17.83	0.00	1.722	18.41	0.06	6.9	93.1	0.0	-2.19	1.63	0.33	0.23	0.41	14789	1907	12	0	6	0	0	logfile
✔	6ZiT	11229	2021-10-05	2020-06-26	3.49	3.68	4.20	3.5	0.005	0.74	0.0	0.04	15.18	0.01	1.968	22.00	0.00	10.6	89.4	0.0	-1.92	0.49	0.72	0.69	3.5	0.013	1.07	1.0	0.04	16.76	0.01	1.956	13.68	0.00	5.4	94.6	0.0	0.29	0.59	0.49	0.72	0.42	20646	1300	15	0	0	0	10446	logfile

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