Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o7R	12754	2022-07-07	2021-04-13	3.9	4.51	—	4.3	0.013	1.32	8.0	0.07	16.26	0.01	1.912	21.03	1.07	18.3	81.4	0.3	-5.78	0.83	0.75	0.13	4.3	0.007	1.05	1.0	0.05	17.18	0.01	1.930	21.53	0.74	10.2	89.7	0.1	-3.28	0.86	0.83	0.75	0.30	40530	5126	16	0	40	0	0	logfile
✔	3JCD	6549	2022-07-08	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.69	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.009	1.30	3.0	0.06	19.34	0.01	1.552	58.33	0.29	15.3	83.3	1.3	-4.06	2.01	0.67	0.38	0.30	147815	5982	57	4715	0	0	0	logfile
✔	6TQM	10555	2022-07-07	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.8	0.011	1.11	1.0	0.04	15.94	0.00	1.851	15.53	0.43	10.5	89.5	0.0	-3.67	1.07	0.36	0.21	0.31	39616	2578	6	0	4	0	19804	logfile
✔	6UMM	20820	2022-07-05	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	12.00	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	4.1	0.004	0.92	0.0	0.05	14.46	0.00	2.056	24.51	0.70	4.4	95.6	0.0	0.76	1.20	0.62	0.83	0.32	23658	3184	10	0	0	0	0	logfile
✔	6QZF	4685	2022-07-04	2019-03-11	3.8	4.25	—	4.1	0.010	1.06	0.0	0.06	10.18	0.01	2.143	10.35	0.16	9.8	90.1	0.0	-4.87	0.67	0.72	0.54	4.1	0.005	0.95	0.0	0.05	17.11	0.01	2.016	28.19	1.07	8.7	91.3	0.0	-1.90	1.73	0.66	0.72	0.32	71628	8880	60	0	0	0	0	logfile
✔	7QPG	14120	2022-07-03	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	7.04	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.4	0.006	0.80	0.0	0.04	13.15	0.00	1.840	14.65	0.12	3.1	96.9	0.0	1.00	0.83	0.87	0.74	0.32	57164	7156	6	0	0	0	0	logfile
✔	7RYE	24735	2022-07-04	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.004	0.77	0.0	0.04	17.72	0.01	2.110	15.54	0.56	4.1	95.9	0.0	1.33	1.08	0.81	0.79	0.33	19708	2535	24	0	0	0	0	logfile
✔	5LKH	4068	2022-07-07	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.25	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.004	0.83	0.0	0.04	15.55	0.01	2.085	26.64	0.22	6.6	93.4	0.0	-0.75	2.06	0.50	0.56	0.33	37345	4740	5	0	0	0	0	logfile
✔	5iMQ	6584	2022-07-11	2016-03-06	3.8	3.95	—	3.9	0.012	1.41	0.0	0.07	20.60	0.01	1.006	63.10	4.55	16.6	72.8	10.6	-4.61	0.71	0.65	0.92	3.9	0.006	0.96	2.0	0.04	19.19	0.01	1.732	25.86	1.21	17.1	80.6	2.4	-3.87	0.80	0.82	0.79	0.34	153046	6640	56	4680	1	0	0	logfile
✔	6TA3	10421	2022-07-03	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.77	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.008	1.20	1.0	0.05	17.85	0.01	1.307	34.27	0.00	3.2	96.8	0.0	-0.17	2.41	0.77	0.73	0.34	9491	1201	6	0	5	0	0	logfile
✔	6Z5U	11082	2022-07-04	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.93	0.01	0.901	4.94	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.008	0.89	1.0	0.04	14.43	0.01	2.092	11.99	0.15	4.7	95.2	0.0	-0.06	1.51	0.27	0.13	0.35	17880	2334	14	0	4	0	0	logfile
✔	6DNC	7970	2022-07-10	2018-06-06	3.7	6.35	—	4.1	0.008	1.14	2.0	0.09	13.50	0.01	1.764	6.87	1.11	13.5	84.5	2.0	-4.52	0.87	0.73	0.26	4.1	0.005	0.70	1.0	0.03	16.26	0.00	1.961	31.11	0.70	9.7	90.2	0.1	-1.71	2.28	0.96	0.91	0.35	152438	6520	59	4735	0	0	0	logfile
✔	6NQB	0482	2022-07-07	2019-01-20	3.8	4.35	—	4.0	0.006	0.98	0.0	0.05	17.60	0.01	2.216	8.05	0.41	13.6	86.3	0.1	-5.36	0.86	0.79	0.88	4.0	0.009	0.94	1.0	0.04	18.12	0.01	1.627	28.50	0.41	15.1	84.8	0.1	-3.39	0.72	0.87	0.79	0.36	42570	1752	17	1341	1	0	0	logfile
✔	6XQB	22288	2022-07-04	2020-07-09	3.4	4.22	—	3.9	0.012	1.28	0.0	0.06	12.24	0.01	2.069	14.03	0.23	15.2	84.8	0.0	-5.15	0.75	0.57	0.58	3.9	0.003	0.69	0.0	0.04	14.31	0.00	1.950	21.99	0.00	9.2	90.8	0.0	-2.55	1.31	0.76	0.60	0.36	16323	1008	7	15	3	0	7987	logfile
✔	6RAX	4786	2022-07-07	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	24.00	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.006	0.87	0.0	0.04	18.40	0.01	2.102	15.60	0.72	11.8	88.2	0.0	-3.06	1.49	0.57	0.55	0.36	40970	5062	19	29	6	0	0	logfile
✔	7P1J	13162	2022-07-03	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.013	1.57	0.0	0.05	14.60	0.00	2.181	23.02	0.57	6.0	94.0	0.0	0.85	1.42	0.66	0.73	0.37	6502	868	2	0	0	0	0	logfile
✔	7K8V	22732	2022-07-05	2020-09-27	3.8	4.64	—	4.0	0.003	0.59	0.0	0.07	12.91	0.00	2.005	11.46	0.15	4.8	95.1	0.2	-2.90	0.81	0.74	0.42	4.1	0.009	0.97	1.0	0.04	14.65	0.00	2.045	19.40	0.26	6.4	93.4	0.2	-1.50	0.69	0.82	0.79	0.37	26248	3390	20	0	41	0	0	logfile
✔	6W62	21551	2022-07-03	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	14.23	0.00	1.883	16.36	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	4.0	0.004	0.80	0.0	0.05	16.93	0.01	2.106	18.20	0.59	10.4	89.6	0.0	-1.85	1.21	0.72	0.68	0.37	7387	910	2	24	0	0	0	logfile
✔	7o6B	12737	2022-07-04	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.002	0.55	0.0	0.04	14.05	0.00	2.012	9.95	0.38	4.0	96.0	0.0	0.60	1.16	0.76	0.70	0.37	14200	879	1	0	0	0	7040	logfile
✔	7KNi	22950	2022-07-07	2020-11-04	3.91	4.86	4.13	3.9	0.003	0.61	0.0	0.05	14.27	0.01	2.045	4.31	0.07	4.4	95.6	0.0	-1.75	0.77	0.56	0.26	4.0	0.005	0.74	0.0	0.05	15.94	0.01	2.046	22.90	0.26	7.2	92.8	0.0	-1.12	1.42	0.84	0.74	0.38	39574	4878	18	0	68	0	0	logfile

• ← previous
• Page 4 of 392
• next →