Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RTU	24689	2023-04-20	2021-08-15	3.89	4.06	—	4.1	0.003	0.61	0.0	0.04	14.31	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.56	0.0	0.04	16.58	0.00	2.211	7.03	0.31	2.4	97.6	0.0	4.14	0.30	0.62	0.73	0.38	5962	754	6	0	12	0	0	logfile
✔	6W62	21551	2023-04-20	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	14.23	0.00	1.883	16.29	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	4.0	0.003	0.75	0.0	0.04	16.90	0.00	2.135	17.07	1.04	9.6	90.4	0.0	-1.75	1.21	0.72	0.68	0.39	7387	910	2	24	0	0	0	logfile
✔	7SoY	25363	2023-04-22	2021-11-01	3.4	4.73	—	3.7	0.003	0.63	0.0	0.04	12.63	0.00	2.231	12.96	0.37	1.7	98.3	0.0	1.32	0.90	0.83	0.53	3.7	0.003	0.64	0.0	0.04	14.33	0.00	2.076	14.51	0.22	2.4	97.6	0.0	1.48	0.49	0.91	0.85	0.39	12180	1529	4	0	0	0	0	logfile
✔	7ZPJ	14855	2023-04-26	2022-04-27	3.81	3.24	3.86	6.5	0.004	0.86	0.0	0.05	13.19	0.01	2.159	2.94	0.67	3.3	96.7	0.0	0.22	0.54	0.33	0.15	2.1	0.004	0.69	0.0	0.04	15.40	0.01	1.881	14.65	0.75	4.9	95.1	0.0	-0.12	1.51	0.64	0.57	0.39	23479	1355	3	55	0	0	11508	logfile
✔	7CG4	30350	2023-04-21	2020-06-30	3.6	4.04	—	3.9	0.003	0.69	0.0	0.04	14.90	0.00	2.192	7.47	0.34	5.1	94.9	0.0	-2.88	0.49	0.77	0.53	4.0	0.004	0.88	0.0	0.04	17.36	0.00	2.148	10.42	0.51	5.3	94.7	0.1	1.07	1.96	0.45	0.76	0.41	10943	1419	11	0	0	0	0	logfile
✔	7WVP	32856	2023-04-29	2022-02-10	3.7	3.43	—	3.8	0.005	0.85	2.0	0.06	13.45	0.01	2.335	3.35	0.40	3.9	95.9	0.1	-4.59	0.70	0.59	0.30	3.8	0.004	0.82	1.0	0.05	15.92	0.00	2.060	17.53	0.61	5.2	94.8	0.0	-1.57	1.54	0.75	0.67	0.41	29601	3750	4	0	0	0	0	logfile
✔	6SXA	10337	2023-04-20	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.25	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.83	0.0	0.04	15.04	0.00	2.240	11.90	0.00	6.0	93.9	0.1	-0.30	1.73	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	7M18	23615	2023-04-20	2021-03-12	3.38	4.09	—	4.1	0.007	1.33	0.0	0.05	19.80	0.01	1.728	23.77	0.28	10.4	89.3	0.3	-2.48	0.74	0.73	0.41	4.1	0.003	0.79	0.0	0.04	19.96	0.01	2.078	17.84	0.33	8.5	91.3	0.1	-1.88	0.55	0.75	0.74	0.41	54064	6904	32	8	16	0	0	logfile
✔	6oT0	20190	2023-04-21	2019-05-02	3.84	4.10	—	4.4	0.009	1.13	0.0	0.07	14.50	0.01	2.191	3.20	0.79	6.3	93.7	0.0	-3.15	0.53	0.75	0.80	4.4	0.003	0.78	0.0	0.04	16.41	0.00	2.100	17.65	0.53	5.3	94.7	0.0	-1.29	1.37	0.55	0.77	0.44	10572	1345	7	0	1	0	0	logfile
✔	7CR7	30448	2023-04-23	2020-08-12	3.7	3.92	—	3.8	0.008	0.79	0.0	0.04	14.63	0.00	1.825	92.66	0.00	5.6	94.2	0.2	-3.89	0.64	0.69	0.59	3.8	0.004	0.90	0.0	0.04	17.53	0.00	2.011	22.09	0.59	4.2	95.8	0.0	-0.01	1.52	0.63	0.70	0.45	16136	1988	12	0	4	0	0	logfile
✔	6XQB	22288	2023-04-23	2020-07-09	3.4	4.22	—	3.9	0.012	1.28	0.0	0.06	12.24	0.01	2.069	13.97	0.23	15.2	84.8	0.0	-5.15	0.75	0.57	0.58	3.8	0.003	0.67	0.0	0.04	14.08	0.00	1.948	19.66	0.11	8.7	91.3	0.0	-1.84	1.28	0.76	0.59	0.45	16323	1008	7	15	3	0	7987	logfile
✔	7M20	23627	2023-04-21	2021-03-15	3.84	4.44	—	4.4	0.009	1.56	0.0	0.07	20.41	0.01	2.148	30.79	2.84	11.1	88.6	0.3	-2.43	0.74	0.72	0.65	4.4	0.003	0.82	0.0	0.04	19.74	0.00	2.103	17.82	0.49	6.5	93.5	0.0	-1.46	0.63	0.74	0.72	0.46	60705	7785	36	9	18	0	0	logfile
✔	7RZH	24760	2023-04-23	2021-08-27	3.8	3.54	—	3.2	0.012	1.50	6.0	0.11	14.19	0.00	1.444	15.94	5.29	2.6	97.3	0.2	2.98	0.66	0.54	0.28	3.2	0.003	0.76	0.0	0.04	16.32	0.00	2.140	16.73	0.24	3.1	96.8	0.1	0.07	3.18	0.71	0.63	0.46	15300	1867	2	0	0	0	0	logfile
✔	8GWB	34308	2023-04-26	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.74	0.0	0.04	16.77	0.00	2.117	17.33	2.69	7.5	92.4	0.1	-1.54	1.60	0.34	0.15	0.46	21879	2655	16	54	10	7	0	logfile
✔	7P1i	13161	2023-04-20	2021-07-01	3.15	4.49	3.18	4.4	0.002	0.57	0.0	0.04	11.18	0.00	2.265	8.39	5.90	4.3	95.7	0.0	3.38	0.55	0.71	0.60	4.3	0.004	1.18	1.0	0.05	14.98	0.00	2.140	21.37	0.14	6.1	93.9	0.0	0.34	0.96	0.57	0.72	0.46	6644	884	2	0	0	0	0	logfile
✔	7CR4	30447	2023-04-23	2020-08-12	3.9	4.24	—	3.9	0.008	0.65	0.0	0.04	13.14	0.00	1.833	102.74	0.00	4.6	95.4	0.0	-2.89	0.59	0.76	0.53	3.9	0.004	0.87	1.0	0.04	16.37	0.00	2.127	26.39	0.60	2.9	97.1	0.0	0.40	1.42	0.57	0.76	0.47	15988	1968	12	0	4	0	0	logfile
✔	8DG7	27417	2023-04-23	2022-06-23	3.32	3.61	3.39	3.5	0.007	1.11	1.0	0.06	17.48	0.01	1.980	8.83	1.24	8.7	91.2	0.1	-2.75	0.70	0.70	0.47	3.5	0.003	0.66	0.0	0.04	17.26	0.00	1.930	14.66	0.12	6.7	93.1	0.2	-0.62	0.94	0.71	0.71	0.47	15609	1816	7	47	9	0	0	logfile
✔	7MFF	23815	2023-04-20	2021-04-09	3.89	3.48	—	3.6	0.004	0.58	0.0	0.04	15.24	0.00	2.193	8.89	0.12	3.5	96.5	0.0	-0.09	0.69	0.71	1.30	3.6	0.003	0.67	0.0	0.04	17.04	0.00	2.185	12.84	0.47	4.7	95.3	0.0	0.86	1.43	0.70	0.72	0.48	8003	1000	6	0	2	0	0	logfile
✔	6RJU	4906	2023-04-19	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	7Q5B	13831	2023-04-26	2021-11-03	3.98	3.20	—	3.1	0.004	0.91	0.0	0.05	21.10	0.01	2.231	9.48	0.10	13.2	86.5	0.2	-2.85	0.72	0.60	0.71	3.1	0.004	0.74	0.0	0.04	22.37	0.00	2.093	19.55	0.70	14.2	85.7	0.1	-2.33	1.64	0.74	0.65	0.48	21746	2255	13	168	0	0	0	logfile

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