Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X7Y	33053	2023-09-30	2022-03-10	3.8	4.09	3.74	4.0	0.002	0.52	0.0	0.04	7.69	0.00	2.098	5.15	0.06	2.9	97.1	0.0	-3.46	0.76	0.78	1.33	4.0	0.003	0.68	0.0	0.04	13.39	0.00	2.034	9.90	0.23	2.7	97.3	0.0	0.98	1.33	0.78	0.82	0.53	63007	8247	16	0	0	0	0	logfile
✔	6W8P	21577	2023-09-28	2020-03-21	3.6	4.05	—	4.0	0.004	0.76	0.0	0.04	18.04	0.00	2.236	14.92	10.89	10.4	89.6	0.0	-3.47	0.57	0.80	0.57	4.0	0.004	0.80	0.0	0.04	17.40	0.00	2.216	14.38	0.86	9.4	90.6	0.0	-0.22	2.10	0.57	0.78	0.53	6509	844	4	0	3	0	0	logfile
✔	7W6P	32331	2023-09-29	2021-12-02	3.47	3.79	—	9.6	0.004	0.70	0.0	0.04	13.78	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.68	0.0	0.04	15.37	0.00	2.199	14.66	0.44	5.7	94.3	0.0	-0.83	1.94	0.31	0.25	0.54	8408	1083	5	0	1	0	0	logfile
✔	8EXR	28660	2023-09-28	2022-10-25	3.8	4.08	3.96	4.1	0.026	1.94	0.0	0.11	11.54	0.01	2.016	3.98	0.00	2.8	96.9	0.3	-0.66	0.58	0.68	1.29	4.1	0.003	0.71	0.0	0.04	15.99	0.01	2.122	14.02	1.06	4.5	95.5	0.0	-0.80	1.25	0.54	0.67	0.54	5111	590	5	0	7	0	0	logfile
✔	8EFD	28080	2023-09-28	2022-09-08	3.8	4.67	3.83	3.9	0.002	0.49	0.0	0.04	14.10	0.00	2.048	8.46	0.13	3.8	96.2	0.0	0.81	0.88	0.79	0.38	3.9	0.002	0.61	0.0	0.04	15.94	0.00	2.165	13.04	0.26	4.5	95.5	0.0	0.71	0.55	0.88	0.80	0.54	7107	886	2	0	0	0	0	logfile
✔	6TA3	10421	2023-09-29	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.72	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.89	0.0	0.05	17.88	0.01	1.271	29.54	0.58	3.7	96.3	0.0	-0.37	2.45	0.78	0.74	0.54	9491	1201	6	0	5	0	0	logfile
✔	7S8U	24922	2023-09-28	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.10	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.004	0.86	0.0	0.05	16.32	0.01	2.069	18.36	0.88	9.6	89.9	0.5	-0.50	1.41	0.51	0.62	0.54	5210	667	1	0	0	0	0	logfile
✔	7RAK	24363	2023-09-30	2021-07-01	3.9	4.13	—	4.1	0.003	0.61	0.0	0.04	6.78	0.00	2.283	4.06	0.00	14.0	85.0	1.0	-3.87	0.62	0.61	0.78	4.1	0.002	0.61	0.0	0.04	12.16	0.00	2.263	7.67	0.25	5.0	94.8	0.1	-1.25	1.31	0.71	0.75	0.55	61296	8112	32	0	16	0	0	logfile
✔	6UZ3	20951	2023-09-29	2019-11-14	3.5	3.88	—	3.8	0.022	1.33	3.0	0.15	17.37	0.01	1.260	32.37	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.003	0.83	0.0	0.04	17.06	0.00	2.155	17.35	0.84	6.8	93.1	0.2	-0.13	1.28	0.41	0.69	0.56	9446	1126	5	0	25	0	0	logfile
✔	7ZW6	14993	2023-09-29	2022-05-18	3.7	3.96	3.76	3.7	0.003	0.53	0.0	0.04	16.90	0.00	1.934	8.56	0.31	2.7	97.3	0.0	2.29	0.78	0.59	0.31	3.7	0.002	0.51	0.0	0.04	17.93	0.00	1.920	55.57	0.33	3.2	96.8	0.0	2.03	1.98	0.83	0.72	0.56	57112	6344	8	0	0	0	6176	logfile
✔	8CXo	27062	2023-09-27	2022-05-22	3.7	4.10	3.65	4.1	0.003	0.58	0.0	0.04	10.02	0.00	2.329	2.39	0.00	2.7	96.9	0.4	1.90	0.60	0.77	1.79	4.1	0.003	0.78	0.0	0.04	15.98	0.00	2.193	15.37	0.00	4.0	96.0	0.0	1.05	2.10	0.62	0.80	0.56	4392	551	1	0	1	0	0	logfile
✔	7DGZ	30676	2023-09-30	2020-11-12	3.8	4.12	—	4.0	0.008	1.43	3.0	0.07	12.24	0.01	1.238	9.03	1.31	17.6	80.9	1.5	-6.15	0.80	0.71	1.44	3.9	0.003	0.87	0.0	0.04	14.39	0.01	2.084	11.40	0.37	14.7	85.1	0.3	-3.35	1.61	0.82	0.73	0.56	60921	7992	61	0	21	0	0	logfile
✔	8D43	27173	2023-09-28	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	18.27	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.2	0.004	0.84	0.0	0.05	18.51	0.01	2.058	18.77	3.10	5.2	94.7	0.1	-1.45	2.71	0.41	0.35	0.56	7763	962	5	0	6	1	0	logfile
✔	8J6S	36013	2023-09-30	2023-04-26	3.8	5.06	3.99	3.8	0.004	0.79	0.0	0.04	29.74	0.01	1.907	22.08	1.06	3.9	96.1	0.0	-0.40	0.83	0.73	1.29	3.9	0.005	0.83	0.0	0.04	29.71	0.00	1.986	22.77	0.00	3.3	96.7	0.0	0.51	0.72	0.88	0.84	0.57	10030	933	12	197	0	0	0	logfile
✔	7RP6	24613	2023-09-28	2021-08-03	3.78	3.85	—	3.8	0.006	0.96	0.0	0.06	14.85	0.01	2.334	5.72	0.59	5.7	94.3	0.0	-4.72	0.69	0.82	1.37	3.8	0.003	0.72	0.0	0.04	16.49	0.00	2.141	11.79	0.30	4.7	95.3	0.0	-0.09	1.18	0.66	0.82	0.58	6753	900	2	0	0	0	0	logfile
✔	7WX4	32876	2023-09-27	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.003	0.57	0.0	0.04	17.71	0.00	2.120	5.71	0.00	6.0	94.0	0.0	-0.14	0.45	0.43	0.82	0.59	1992	260	2	0	0	0	0	logfile
✔	7S37	24818	2023-09-29	2021-09-04	3.2	3.10	3.27	2.3	0.006	1.04	0.0	0.05	12.76	0.01	2.211	4.66	0.11	3.7	96.3	0.0	-1.48	0.74	0.62	0.31	2.2	0.003	0.68	0.0	0.04	15.87	0.00	2.128	15.59	0.43	3.6	96.4	0.0	0.32	1.47	0.77	0.67	0.59	9392	1033	2	46	0	0	0	logfile
✔	7EGC	31112	2023-09-29	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.43	0.01	1.402	24.31	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.008	0.96	3.0	0.05	16.79	0.01	1.880	20.83	0.49	7.3	92.4	0.3	-0.99	1.29	0.53	0.34	0.60	113129	13879	63	142	18	0	0	logfile
✔	7E7S	31003	2023-09-28	2021-02-27	3.3	3.32	3.27	3.4	0.003	0.50	0.0	0.04	14.41	0.00	2.166	8.26	0.00	2.6	97.4	0.0	-0.13	0.68	0.82	1.44	3.3	0.002	0.53	0.0	0.04	15.91	0.00	2.219	8.70	0.00	3.3	96.7	0.0	1.42	1.29	0.66	0.82	0.60	7884	1020	1	0	2	0	0	logfile
✔	7KNT	22962	2023-09-27	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.51	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.8	0.003	0.68	0.0	0.04	16.11	0.00	2.240	12.59	0.49	3.2	96.8	0.0	0.60	0.45	0.57	0.76	0.61	3716	455	2	0	0	0	0	logfile

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