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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6MU2 | 9244 | 2022-12-22 | 2018-10-22 | 3.9 | 4.63 | — | 4.5 | 0.012 | 2.05 | 157.0 | 0.17 | 15.10 | 0.01 | 1.078 | 54.14 | 14.66 | 11.0 | 87.3 | 1.7 | -1.58 | 0.70 | 0.68 | 0.40 | 4.5 | 0.008 | 1.13 | 3.0 | 0.06 | 15.84 | 0.01 | 1.996 | 35.83 | 2.85 | 12.2 | 87.3 | 0.5 | -0.80 | 1.02 | 0.73 | 0.73 | 0.32 | 51404 | 8680 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QPG | 14120 | 2022-12-12 | 2022-01-04 | 3.9 | 4.08 | — | 2.8 | 0.002 | 0.54 | 0.0 | 0.04 | 10.05 | 0.00 | 2.093 | 7.04 | 0.00 | 2.7 | 97.3 | 0.0 | 0.34 | 0.78 | 0.58 | 0.22 | 2.3 | 0.002 | 0.65 | 0.0 | 0.04 | 12.86 | 0.00 | 2.133 | 10.25 | 0.15 | 2.8 | 97.2 | 0.0 | 1.30 | 0.80 | 0.86 | 0.72 | 0.32 | 57164 | 7156 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QFP | 13946 | 2022-12-12 | 2021-12-06 | 3.7 | 4.43 | 3.74 | 4.1 | 0.007 | 1.11 | 4.0 | 0.08 | 15.77 | 0.01 | 2.167 | 19.15 | 4.14 | 12.5 | 86.9 | 0.6 | -4.48 | 0.84 | 0.72 | 0.85 | 4.1 | 0.003 | 0.78 | 0.0 | 0.05 | 16.86 | 0.00 | 2.104 | 17.43 | 0.44 | 12.7 | 87.2 | 0.1 | -2.87 | 0.80 | 0.85 | 0.76 | 0.32 | 9996 | 1233 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VZF | 32227 | 2022-12-11 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.83 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.004 | 0.91 | 0.0 | 0.05 | 18.86 | 0.00 | 2.102 | 13.65 | 4.61 | 18.2 | 81.8 | 0.0 | -4.30 | 1.96 | 0.37 | 0.63 | 0.33 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y7C | 10713 | 2022-12-15 | 2020-02-28 | 3.8 | 5.42 | 3.84 | 2.8 | 0.015 | 1.44 | 1.0 | 0.06 | 18.61 | 0.01 | 0.193 | 10.37 | 1.00 | 14.3 | 85.4 | 0.3 | -5.44 | 0.89 | 0.71 | 0.41 | 2.6 | 0.013 | 0.96 | 0.0 | 0.05 | 19.10 | 0.01 | 1.966 | 42.09 | 0.50 | 16.7 | 83.1 | 0.2 | -4.01 | 2.61 | 0.92 | 0.79 | 0.34 | 79690 | 5381 | 34 | 1735 | 0 | 0 | 0 | logfile |
✔ | 6UKT | 20812 | 2022-12-12 | 2019-10-05 | 3.87 | 4.71 | — | 4.3 | 0.007 | 1.03 | 0.0 | 0.06 | 16.89 | 0.01 | 2.247 | 10.29 | 0.46 | 15.8 | 84.2 | 0.0 | -5.03 | 0.89 | 0.80 | 0.36 | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 17.58 | 0.00 | 2.134 | 13.73 | 0.23 | 11.6 | 88.4 | 0.0 | -2.46 | 0.54 | 0.90 | 0.84 | 0.34 | 8979 | 1204 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PMi | 20394 | 2022-12-12 | 2019-07-02 | 3.86 | 4.66 | — | 4.1 | 0.012 | 1.26 | 0.0 | 0.06 | 15.81 | 0.01 | 1.949 | 12.38 | 0.24 | 10.7 | 88.9 | 0.4 | -4.48 | 0.69 | 0.51 | 0.20 | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 17.35 | 0.00 | 1.817 | 21.64 | 0.41 | 9.6 | 90.3 | 0.1 | -2.29 | 1.36 | 0.86 | 0.77 | 0.35 | 57985 | 3453 | 10 | 110 | 4 | 0 | 28610 | logfile |
✔ | 6ZiT | 11229 | 2022-12-14 | 2020-06-26 | 3.49 | 3.68 | 4.20 | 3.5 | 0.005 | 0.74 | 0.0 | 0.04 | 15.19 | 0.01 | 1.968 | 23.60 | 0.00 | 10.6 | 89.4 | 0.0 | -1.92 | 0.49 | 0.72 | 0.69 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.56 | 0.00 | 1.970 | 14.07 | 0.28 | 5.1 | 94.9 | 0.0 | 0.29 | 0.53 | 0.49 | 0.73 | 0.35 | 20646 | 1300 | 15 | 0 | 0 | 0 | 10446 | logfile |
✔ | 7o7R | 12754 | 2022-12-20 | 2021-04-13 | 3.9 | 4.51 | — | 4.3 | 0.013 | 1.32 | 8.0 | 0.07 | 16.26 | 0.01 | 1.912 | 21.03 | 1.07 | 18.3 | 81.4 | 0.3 | -5.78 | 0.83 | 0.75 | 0.13 | 4.3 | 0.004 | 0.96 | 0.0 | 0.05 | 17.08 | 0.01 | 1.975 | 22.06 | 0.45 | 9.7 | 90.2 | 0.1 | -3.30 | 0.87 | 0.83 | 0.76 | 0.36 | 40530 | 5126 | 16 | 0 | 40 | 0 | 0 | logfile |
✔ | 7MVU | 24056 | 2022-12-15 | 2021-05-15 | 3.77 | 4.87 | 3.73 | 4.0 | 0.002 | 0.36 | 0.0 | 0.03 | 6.38 | 0.00 | 2.187 | 3.55 | 0.00 | 1.1 | 98.9 | 0.0 | -0.33 | 0.85 | 0.73 | 0.19 | 4.1 | 0.002 | 0.58 | 0.0 | 0.03 | 11.85 | 0.00 | 1.937 | 10.96 | 0.22 | 2.9 | 97.1 | 0.0 | 2.75 | 2.06 | 0.88 | 0.82 | 0.36 | 25645 | 1604 | 2 | 0 | 0 | 0 | 12841 | logfile |
✔ | 7RX0 | 24721 | 2022-12-12 | 2021-08-20 | 3.89 | 4.63 | — | 4.5 | 0.006 | 0.85 | 1.0 | 0.05 | 15.16 | 0.00 | 1.666 | 29.33 | 0.00 | 7.1 | 92.9 | 0.0 | -2.61 | 0.60 | 0.82 | 0.77 | 4.5 | 0.004 | 0.87 | 0.0 | 0.04 | 16.93 | 0.01 | 1.982 | 23.31 | 1.21 | 5.0 | 95.0 | 0.0 | -0.69 | 1.54 | 0.59 | 0.82 | 0.36 | 9673 | 1182 | 7 | 0 | 83 | 0 | 0 | logfile |
✔ | 6RED | 4850 | 2022-12-18 | 2019-04-12 | 3.0 | 3.22 | 3.14 | 27.0 | 0.012 | 1.04 | 0.0 | 0.06 | 14.48 | 0.01 | 2.140 | 5.89 | 0.31 | 4.7 | 95.2 | 0.1 | -3.86 | 0.16 | 0.02 | 0.19 | 27.0 | 0.003 | 0.69 | 0.0 | 0.04 | 15.73 | 0.00 | 1.878 | 15.90 | 1.91 | 4.2 | 95.7 | 0.1 | -0.48 | 0.94 | 0.23 | 0.13 | 0.37 | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 7o6B | 12737 | 2022-12-13 | 2021-04-09 | 3.88 | 4.21 | 4.15 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 11.54 | 0.01 | 2.128 | 6.00 | 0.38 | 4.3 | 95.7 | 0.0 | -0.87 | 0.75 | 0.67 | 0.37 | 3.8 | 0.002 | 0.55 | 0.0 | 0.04 | 14.05 | 0.00 | 2.012 | 9.95 | 0.38 | 4.0 | 96.0 | 0.0 | 0.60 | 1.16 | 0.76 | 0.70 | 0.37 | 14200 | 879 | 1 | 0 | 0 | 0 | 7040 | logfile |
✔ | 7VQ4 | 32085 | 2022-12-11 | 2021-10-19 | 3.2 | 3.54 | — | 3.6 | 0.007 | 0.74 | 0.0 | 0.04 | 16.10 | 0.00 | 2.155 | 9.75 | 2.30 | 6.6 | 93.4 | 0.0 | -1.96 | 0.61 | 0.79 | 1.10 | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 17.23 | 0.00 | 2.154 | 9.28 | 0.57 | 4.3 | 95.7 | 0.0 | 2.97 | 1.30 | 0.59 | 0.79 | 0.37 | 6306 | 800 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PC2 | 13316 | 2022-12-15 | 2021-08-03 | 2.8 | 3.39 | — | 6.5 | 0.033 | 1.53 | 5.0 | 0.05 | 15.16 | 0.01 | 1.809 | 9.01 | 1.49 | 7.8 | 92.2 | 0.0 | -3.81 | 0.43 | 0.05 | -0.14 | 3.1 | 0.011 | 0.95 | 0.0 | 0.05 | 16.36 | 0.01 | 2.036 | 16.86 | 2.94 | 6.3 | 93.7 | 0.0 | -1.20 | 1.45 | 0.59 | 0.38 | 0.38 | 27063 | 3093 | 68 | 0 | 210 | 0 | 0 | logfile |
✔ | 7S37 | 24818 | 2022-12-12 | 2021-09-04 | 3.2 | 3.10 | 3.27 | 2.3 | 0.006 | 1.04 | 0.0 | 0.05 | 12.76 | 0.01 | 2.211 | 4.71 | 0.11 | 3.7 | 96.3 | 0.0 | -1.48 | 0.74 | 0.62 | 0.31 | 2.2 | 0.003 | 0.67 | 0.0 | 0.04 | 15.86 | 0.00 | 2.085 | 16.35 | 0.33 | 3.2 | 96.8 | 0.0 | 0.16 | 1.47 | 0.77 | 0.67 | 0.38 | 9392 | 1033 | 2 | 46 | 0 | 0 | 0 | logfile |
✔ | 6VQU | 21357 | 2022-12-14 | 2020-02-05 | 3.88 | 4.99 | 3.94 | 4.1 | 0.007 | 0.94 | 0.0 | 0.06 | 14.62 | 0.01 | 2.276 | 5.25 | 1.70 | 3.4 | 96.6 | 0.0 | -2.26 | 0.73 | 0.86 | 0.46 | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 15.01 | 0.00 | 2.196 | 11.37 | 0.21 | 2.5 | 97.5 | 0.0 | 2.12 | 1.05 | 0.73 | 0.88 | 0.38 | 9156 | 1178 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2022-12-12 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.76 | 0.01 | 0.317 | 210.77 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.004 | 0.86 | 0.0 | 0.04 | 17.60 | 0.01 | 1.333 | 27.41 | 0.78 | 3.1 | 96.9 | 0.0 | -0.05 | 2.41 | 0.77 | 0.73 | 0.40 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7CG4 | 30350 | 2022-12-12 | 2020-06-30 | 3.6 | 4.04 | — | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 14.90 | 0.00 | 2.192 | 7.47 | 0.34 | 5.1 | 94.9 | 0.0 | -2.88 | 0.49 | 0.77 | 0.53 | 4.0 | 0.004 | 0.87 | 0.0 | 0.04 | 17.37 | 0.00 | 2.192 | 10.28 | 0.34 | 5.1 | 94.9 | 0.1 | 1.28 | 1.95 | 0.45 | 0.76 | 0.41 | 10943 | 1419 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2022-12-19 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.25 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.003 | 0.81 | 0.0 | 0.04 | 15.64 | 0.00 | 2.120 | 25.20 | 0.34 | 6.3 | 93.7 | 0.0 | -0.80 | 2.12 | 0.50 | 0.56 | 0.41 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |