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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7E7S | 31003 | 2023-04-20 | 2021-02-27 | 3.3 | 3.32 | 3.27 | 3.4 | 0.003 | 0.50 | 0.0 | 0.04 | 14.41 | 0.00 | 2.166 | 8.26 | 0.00 | 2.6 | 97.4 | 0.0 | -0.13 | 0.68 | 0.82 | 1.44 | 3.3 | 0.002 | 0.53 | 0.0 | 0.04 | 15.91 | 0.00 | 2.219 | 8.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.42 | 1.29 | 0.66 | 0.82 | 0.60 | 7884 | 1020 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2023-04-24 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.91 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 14.35 | 0.00 | 2.124 | 12.51 | 0.36 | 5.1 | 94.9 | 0.0 | -0.25 | 1.55 | 0.28 | 0.16 | 0.60 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 7LiC | 23372 | 2023-04-22 | 2021-01-26 | 3.3 | 4.38 | — | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 15.15 | 0.01 | 2.261 | 5.27 | 0.90 | 1.4 | 98.6 | 0.0 | -0.82 | 0.72 | 0.79 | 1.06 | 4.2 | 0.004 | 0.78 | 0.0 | 0.04 | 16.83 | 0.00 | 2.086 | 12.31 | 0.67 | 2.4 | 97.6 | 0.0 | 3.13 | 1.31 | 0.68 | 0.78 | 0.60 | 11980 | 1508 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SE0 | 10151 | 2023-04-22 | 2019-07-29 | 3.8 | 4.73 | — | 4.6 | 0.009 | 1.01 | 0.0 | 0.06 | 28.28 | 0.01 | 2.248 | 4.43 | 0.00 | 0.9 | 99.1 | 0.0 | -2.82 | 0.80 | 0.78 | 0.85 | 4.6 | 0.006 | 0.75 | 0.0 | 0.04 | 28.80 | 0.00 | 2.089 | 17.73 | 0.96 | 2.5 | 97.5 | 0.0 | 0.34 | 0.68 | 0.81 | 0.79 | 0.60 | 12002 | 765 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2023-04-23 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.002 | 0.64 | 0.0 | 0.04 | 15.49 | 0.00 | 1.241 | 12.10 | 0.08 | 5.0 | 95.0 | 0.0 | -1.15 | 1.21 | 0.38 | 0.18 | 0.61 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 8DG5 | 27416 | 2023-04-23 | 2022-06-23 | 3.26 | 3.59 | 3.37 | 3.5 | 0.011 | 1.42 | 1.0 | 0.06 | 14.99 | 0.01 | 2.013 | 8.22 | 0.00 | 8.0 | 91.7 | 0.3 | -2.73 | 0.69 | 0.69 | 1.25 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 15.71 | 0.00 | 1.981 | 13.26 | 0.42 | 6.4 | 93.3 | 0.3 | -0.48 | 0.36 | 0.69 | 0.70 | 0.61 | 16269 | 1887 | 5 | 50 | 12 | 0 | 0 | logfile |
✔ | 6E1N | 8958 | 2023-04-21 | 2018-07-10 | 3.7 | 3.85 | 3.77 | 3.8 | 0.015 | 1.55 | 0.0 | 0.07 | 14.72 | 0.01 | 2.054 | 10.59 | 0.37 | 8.3 | 91.6 | 0.2 | -5.21 | 0.49 | 0.72 | 1.63 | 3.8 | 0.003 | 0.80 | 0.0 | 0.04 | 16.01 | 0.00 | 2.211 | 13.08 | 0.74 | 5.8 | 94.2 | 0.0 | -0.96 | 0.89 | 0.52 | 0.72 | 0.61 | 10682 | 1278 | 6 | 0 | 24 | 2 | 0 | logfile |
✔ | 8i54 | 35191 | 2023-04-25 | 2023-01-24 | 3.95 | 4.70 | 4.01 | 4.1 | 0.013 | 1.03 | 0.0 | 0.05 | 18.00 | 0.01 | 2.207 | 13.04 | 0.98 | 12.8 | 86.8 | 0.4 | -3.16 | 0.85 | 0.69 | 0.32 | 4.1 | 0.003 | 0.62 | 0.0 | 0.04 | 18.83 | 0.00 | 1.913 | 26.57 | 0.49 | 14.7 | 85.1 | 0.2 | -3.14 | 0.57 | 0.86 | 0.72 | 0.61 | 19661 | 1113 | 4 | 67 | 0 | 0 | 9100 | logfile |
✔ | 7F8W | 31494 | 2023-04-20 | 2021-07-02 | 3.1 | 2.94 | — | 3.2 | 0.005 | 1.04 | 0.0 | 0.06 | 14.09 | 0.01 | 2.273 | 8.70 | 0.00 | 4.6 | 95.4 | 0.0 | -1.99 | 0.54 | 0.58 | 1.20 | 3.1 | 0.003 | 0.73 | 0.0 | 0.04 | 16.01 | 0.00 | 2.035 | 18.99 | 0.65 | 5.4 | 94.6 | 0.0 | -0.80 | 1.22 | 0.58 | 0.65 | 0.61 | 8486 | 1087 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KNT | 22962 | 2023-04-20 | 2020-11-06 | 3.15 | 4.00 | 3.32 | 3.7 | 0.004 | 0.75 | 0.0 | 0.05 | 14.56 | 0.00 | 2.116 | 11.51 | 0.74 | 3.6 | 96.4 | 0.0 | -0.48 | 0.58 | 0.75 | 1.64 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 16.11 | 0.00 | 2.240 | 12.59 | 0.49 | 3.2 | 96.8 | 0.0 | 0.60 | 0.45 | 0.57 | 0.76 | 0.61 | 3716 | 455 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ASA | 11891 | 2023-04-20 | 2020-10-27 | 3.5 | 3.33 | — | 3.2 | 0.013 | 1.98 | 6.0 | 0.10 | 15.71 | 0.02 | 2.490 | 0.68 | 0.18 | 3.5 | 95.8 | 0.7 | -2.30 | 0.75 | 0.75 | 1.26 | 3.2 | 0.004 | 0.74 | 0.0 | 0.04 | 17.23 | 0.00 | 2.071 | 13.75 | 0.73 | 4.8 | 95.1 | 0.1 | -0.04 | 1.46 | 0.76 | 0.76 | 0.62 | 8104 | 750 | 5 | 116 | 0 | 0 | 0 | logfile |
✔ | 7Z4K | 14500 | 2023-04-23 | 2022-03-04 | 3.81 | 4.83 | 3.89 | 3.9 | 0.003 | 0.44 | 0.0 | 0.03 | 14.82 | 0.00 | 2.200 | 9.44 | 0.99 | 2.4 | 97.6 | 0.0 | 1.12 | 0.85 | 0.75 | 0.54 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 16.91 | 0.00 | 2.146 | 21.08 | 0.25 | 4.4 | 95.6 | 0.0 | 0.02 | 1.90 | 0.88 | 0.80 | 0.62 | 14005 | 1360 | 4 | 138 | 0 | 0 | 0 | logfile |
✔ | 6R9G | 4770 | 2023-04-27 | 2019-04-03 | 3.7 | 3.76 | — | 3.6 | 0.003 | 0.87 | 1.0 | 0.05 | 9.85 | 0.01 | 2.307 | 4.50 | 0.33 | 8.0 | 91.9 | 0.1 | -4.32 | 0.67 | 0.54 | 0.47 | 3.6 | 0.003 | 0.79 | 0.0 | 0.04 | 15.36 | 0.00 | 2.124 | 15.31 | 0.51 | 8.6 | 91.4 | 0.0 | -1.59 | 1.19 | 0.72 | 0.61 | 0.62 | 25944 | 3421 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6T2V | 10370 | 2023-04-26 | 2019-10-09 | 3.8 | 4.58 | — | 3.8 | 0.002 | 0.45 | 0.0 | 0.03 | 13.03 | 0.01 | 2.213 | 4.84 | 3.02 | 2.0 | 98.0 | 0.0 | -3.62 | 0.88 | 0.73 | 0.79 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 15.71 | 0.00 | 2.160 | 15.45 | 0.17 | 4.1 | 95.9 | 0.0 | 0.33 | 2.38 | 0.90 | 0.80 | 0.62 | 23826 | 2847 | 4 | 54 | 0 | 0 | 0 | logfile |
✔ | 7N59 | 24183 | 2023-04-21 | 2021-06-05 | 3.6 | 4.16 | 3.74 | 4.1 | 0.003 | 0.56 | 0.0 | 0.04 | 13.76 | 0.00 | 2.221 | 7.04 | 0.10 | 2.1 | 97.9 | 0.0 | 1.69 | 0.69 | 0.81 | 1.10 | 4.1 | 0.003 | 0.53 | 0.0 | 0.04 | 15.91 | 0.00 | 2.206 | 6.99 | 0.10 | 2.0 | 98.0 | 0.0 | 2.26 | 0.38 | 0.70 | 0.81 | 0.63 | 9238 | 1180 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6QX7 | 4662 | 2023-04-27 | 2019-03-07 | 3.8 | 3.98 | — | 3.9 | 0.006 | 1.16 | 0.0 | 0.06 | 11.55 | 0.01 | 0.726 | 11.76 | 1.75 | 14.3 | 84.1 | 1.6 | -4.94 | 0.63 | 0.59 | 1.19 | 3.9 | 0.004 | 0.94 | 0.0 | 0.05 | 17.09 | 0.01 | 2.061 | 21.16 | 0.77 | 15.3 | 84.3 | 0.4 | -2.07 | 1.16 | 0.66 | 0.59 | 0.63 | 25164 | 3072 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WK5 | 32559 | 2023-04-29 | 2022-01-08 | 3.66 | 3.93 | — | 3.7 | 0.005 | 0.84 | 1.0 | 0.05 | 13.40 | 0.01 | 1.646 | 3.40 | 0.27 | 3.9 | 96.0 | 0.1 | -4.59 | 0.66 | 0.58 | 0.35 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 15.43 | 0.00 | 2.119 | 12.93 | 0.30 | 3.6 | 96.4 | 0.0 | -1.37 | 1.01 | 0.68 | 0.64 | 0.63 | 29601 | 3750 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QS6 | 4624 | 2023-04-29 | 2019-02-20 | 3.9 | 4.03 | 2.44 | 4.0 | 0.011 | 1.09 | 0.0 | 0.06 | 10.53 | 0.01 | 2.187 | 6.85 | 0.07 | 8.2 | 91.8 | 0.0 | -4.07 | 0.57 | 0.46 | 0.09 | 3.9 | 0.003 | 0.80 | 0.0 | 0.05 | 16.46 | 0.00 | 1.964 | 18.64 | 0.47 | 5.7 | 94.3 | 0.0 | -0.45 | 1.40 | 0.74 | 0.77 | 0.63 | 28557 | 3568 | 13 | 0 | 35 | 0 | 0 | logfile |
✔ | 6YS8 | 10893 | 2023-04-20 | 2020-04-21 | 3.9 | 4.00 | 3.55 | 3.9 | 0.006 | 1.03 | 1.0 | 0.08 | 15.75 | 0.02 | 1.522 | 10.61 | 1.70 | 6.4 | 91.4 | 2.2 | -3.81 | 0.65 | 0.83 | 1.77 | 3.9 | 0.004 | 0.89 | 0.0 | 0.05 | 16.96 | 0.00 | 2.102 | 16.84 | 0.85 | 4.8 | 94.1 | 1.1 | 0.66 | 0.74 | 0.65 | 0.82 | 0.63 | 5624 | 737 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S5Y | 24843 | 2023-04-25 | 2021-09-12 | 3.9 | 4.28 | — | 4.1 | 0.010 | 1.48 | 4.0 | 0.08 | 17.61 | 0.01 | 2.160 | 5.99 | 7.41 | 5.3 | 94.7 | 0.1 | -5.12 | 0.64 | 0.81 | 0.64 | 4.1 | 0.003 | 0.82 | 0.0 | 0.04 | 16.92 | 0.00 | 1.949 | 13.68 | 0.22 | 4.5 | 95.5 | 0.0 | 0.10 | 1.54 | 0.65 | 0.83 | 0.64 | 21106 | 2686 | 5 | 0 | 4 | 0 | 0 | logfile |