Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7E7S	31003	2023-04-20	2021-02-27	3.3	3.32	3.27	3.4	0.003	0.50	0.0	0.04	14.41	0.00	2.166	8.26	0.00	2.6	97.4	0.0	-0.13	0.68	0.82	1.44	3.3	0.002	0.53	0.0	0.04	15.91	0.00	2.219	8.70	0.00	3.3	96.7	0.0	1.42	1.29	0.66	0.82	0.60	7884	1020	1	0	2	0	0	logfile
✔	6Z5U	11082	2023-04-24	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.91	0.01	0.901	4.89	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.003	0.71	0.0	0.04	14.35	0.00	2.124	12.51	0.36	5.1	94.9	0.0	-0.25	1.55	0.28	0.16	0.60	17880	2334	14	0	4	0	0	logfile
✔	7LiC	23372	2023-04-22	2021-01-26	3.3	4.38	—	4.2	0.004	0.81	0.0	0.04	15.15	0.01	2.261	5.27	0.90	1.4	98.6	0.0	-0.82	0.72	0.79	1.06	4.2	0.004	0.78	0.0	0.04	16.83	0.00	2.086	12.31	0.67	2.4	97.6	0.0	3.13	1.31	0.68	0.78	0.60	11980	1508	4	0	0	0	0	logfile
✔	6SE0	10151	2023-04-22	2019-07-29	3.8	4.73	—	4.6	0.009	1.01	0.0	0.06	28.28	0.01	2.248	4.43	0.00	0.9	99.1	0.0	-2.82	0.80	0.78	0.85	4.6	0.006	0.75	0.0	0.04	28.80	0.00	2.089	17.73	0.96	2.5	97.5	0.0	0.34	0.68	0.81	0.79	0.60	12002	765	10	290	0	0	0	logfile
✔	5VZL	8749	2023-04-23	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.64	0.0	0.04	15.49	0.00	1.241	12.10	0.08	5.0	95.0	0.0	-1.15	1.21	0.38	0.18	0.61	13915	1451	3	115	1	0	0	logfile
✔	8DG5	27416	2023-04-23	2022-06-23	3.26	3.59	3.37	3.5	0.011	1.42	1.0	0.06	14.99	0.01	2.013	8.22	0.00	8.0	91.7	0.3	-2.73	0.69	0.69	1.25	3.5	0.003	0.64	0.0	0.04	15.71	0.00	1.981	13.26	0.42	6.4	93.3	0.3	-0.48	0.36	0.69	0.70	0.61	16269	1887	5	50	12	0	0	logfile
✔	6E1N	8958	2023-04-21	2018-07-10	3.7	3.85	3.77	3.8	0.015	1.55	0.0	0.07	14.72	0.01	2.054	10.59	0.37	8.3	91.6	0.2	-5.21	0.49	0.72	1.63	3.8	0.003	0.80	0.0	0.04	16.01	0.00	2.211	13.08	0.74	5.8	94.2	0.0	-0.96	0.89	0.52	0.72	0.61	10682	1278	6	0	24	2	0	logfile
✔	8i54	35191	2023-04-25	2023-01-24	3.95	4.70	4.01	4.1	0.013	1.03	0.0	0.05	18.00	0.01	2.207	13.04	0.98	12.8	86.8	0.4	-3.16	0.85	0.69	0.32	4.1	0.003	0.62	0.0	0.04	18.83	0.00	1.913	26.57	0.49	14.7	85.1	0.2	-3.14	0.57	0.86	0.72	0.61	19661	1113	4	67	0	0	9100	logfile
✔	7F8W	31494	2023-04-20	2021-07-02	3.1	2.94	—	3.2	0.005	1.04	0.0	0.06	14.09	0.01	2.273	8.70	0.00	4.6	95.4	0.0	-1.99	0.54	0.58	1.20	3.1	0.003	0.73	0.0	0.04	16.01	0.00	2.035	18.99	0.65	5.4	94.6	0.0	-0.80	1.22	0.58	0.65	0.61	8486	1087	6	0	0	0	0	logfile
✔	7KNT	22962	2023-04-20	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.51	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.8	0.003	0.68	0.0	0.04	16.11	0.00	2.240	12.59	0.49	3.2	96.8	0.0	0.60	0.45	0.57	0.76	0.61	3716	455	2	0	0	0	0	logfile
✔	7ASA	11891	2023-04-20	2020-10-27	3.5	3.33	—	3.2	0.013	1.98	6.0	0.10	15.71	0.02	2.490	0.68	0.18	3.5	95.8	0.7	-2.30	0.75	0.75	1.26	3.2	0.004	0.74	0.0	0.04	17.23	0.00	2.071	13.75	0.73	4.8	95.1	0.1	-0.04	1.46	0.76	0.76	0.62	8104	750	5	116	0	0	0	logfile
✔	7Z4K	14500	2023-04-23	2022-03-04	3.81	4.83	3.89	3.9	0.003	0.44	0.0	0.03	14.82	0.00	2.200	9.44	0.99	2.4	97.6	0.0	1.12	0.85	0.75	0.54	3.9	0.004	0.69	0.0	0.04	16.91	0.00	2.146	21.08	0.25	4.4	95.6	0.0	0.02	1.90	0.88	0.80	0.62	14005	1360	4	138	0	0	0	logfile
✔	6R9G	4770	2023-04-27	2019-04-03	3.7	3.76	—	3.6	0.003	0.87	1.0	0.05	9.85	0.01	2.307	4.50	0.33	8.0	91.9	0.1	-4.32	0.67	0.54	0.47	3.6	0.003	0.79	0.0	0.04	15.36	0.00	2.124	15.31	0.51	8.6	91.4	0.0	-1.59	1.19	0.72	0.61	0.62	25944	3421	7	0	0	0	0	logfile
✔	6T2V	10370	2023-04-26	2019-10-09	3.8	4.58	—	3.8	0.002	0.45	0.0	0.03	13.03	0.01	2.213	4.84	3.02	2.0	98.0	0.0	-3.62	0.88	0.73	0.79	3.8	0.004	0.72	0.0	0.04	15.71	0.00	2.160	15.45	0.17	4.1	95.9	0.0	0.33	2.38	0.90	0.80	0.62	23826	2847	4	54	0	0	0	logfile
✔	7N59	24183	2023-04-21	2021-06-05	3.6	4.16	3.74	4.1	0.003	0.56	0.0	0.04	13.76	0.00	2.221	7.04	0.10	2.1	97.9	0.0	1.69	0.69	0.81	1.10	4.1	0.003	0.53	0.0	0.04	15.91	0.00	2.206	6.99	0.10	2.0	98.0	0.0	2.26	0.38	0.70	0.81	0.63	9238	1180	3	0	1	0	0	logfile
✔	6QX7	4662	2023-04-27	2019-03-07	3.8	3.98	—	3.9	0.006	1.16	0.0	0.06	11.55	0.01	0.726	11.76	1.75	14.3	84.1	1.6	-4.94	0.63	0.59	1.19	3.9	0.004	0.94	0.0	0.05	17.09	0.01	2.061	21.16	0.77	15.3	84.3	0.4	-2.07	1.16	0.66	0.59	0.63	25164	3072	12	0	0	0	0	logfile
✔	7WK5	32559	2023-04-29	2022-01-08	3.66	3.93	—	3.7	0.005	0.84	1.0	0.05	13.40	0.01	1.646	3.40	0.27	3.9	96.0	0.1	-4.59	0.66	0.58	0.35	3.8	0.003	0.71	0.0	0.04	15.43	0.00	2.119	12.93	0.30	3.6	96.4	0.0	-1.37	1.01	0.68	0.64	0.63	29601	3750	4	0	0	0	0	logfile
✔	6QS6	4624	2023-04-29	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.09	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.003	0.80	0.0	0.05	16.46	0.00	1.964	18.64	0.47	5.7	94.3	0.0	-0.45	1.40	0.74	0.77	0.63	28557	3568	13	0	35	0	0	logfile
✔	6YS8	10893	2023-04-20	2020-04-21	3.9	4.00	3.55	3.9	0.006	1.03	1.0	0.08	15.75	0.02	1.522	10.61	1.70	6.4	91.4	2.2	-3.81	0.65	0.83	1.77	3.9	0.004	0.89	0.0	0.05	16.96	0.00	2.102	16.84	0.85	4.8	94.1	1.1	0.66	0.74	0.65	0.82	0.63	5624	737	7	0	0	0	0	logfile
✔	7S5Y	24843	2023-04-25	2021-09-12	3.9	4.28	—	4.1	0.010	1.48	4.0	0.08	17.61	0.01	2.160	5.99	7.41	5.3	94.7	0.1	-5.12	0.64	0.81	0.64	4.1	0.003	0.82	0.0	0.04	16.92	0.00	1.949	13.68	0.22	4.5	95.5	0.0	0.10	1.54	0.65	0.83	0.64	21106	2686	5	0	4	0	0	logfile

• ← previous
• Page 7 of 372
• next →