Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6M3W	30072	2023-09-28	2020-03-04	3.9	4.04	—	3.9	0.011	1.31	0.0	0.08	11.59	0.01	2.264	9.72	0.66	11.1	88.9	0.0	-4.25	0.82	0.78	1.15	3.9	0.004	0.80	0.0	0.06	16.07	0.01	2.138	15.98	1.00	7.5	92.5	0.0	-1.66	0.95	0.82	0.78	0.75	8307	1032	6	0	24	0	0	logfile
✔	7PN1	13545	2023-09-30	2021-09-04	3.9	4.15	3.83	4.0	0.002	0.57	0.0	0.04	12.95	0.00	2.053	6.26	0.00	2.8	97.2	0.0	1.31	0.61	0.80	1.17	4.0	0.002	0.54	0.0	0.04	14.49	0.00	1.939	7.42	0.18	2.6	97.4	0.0	1.52	0.97	0.60	0.80	0.75	10384	657	1	0	0	0	5237	logfile
✔	6RiU	4898	2023-09-27	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.64	0.0	0.03	15.97	0.00	2.064	12.47	0.00	3.9	96.1	0.0	-0.16	1.43	0.61	0.75	0.76	2882	182	2	0	0	0	1430	logfile
✔	7MK2	23884	2023-09-28	2021-04-21	3.8	3.60	3.84	3.6	0.004	0.69	0.0	0.04	14.23	0.00	2.228	8.87	0.00	7.7	92.3	0.0	-1.60	0.63	0.77	0.81	3.6	0.003	0.66	0.0	0.04	15.99	0.00	2.276	8.50	0.35	4.4	95.6	0.0	-0.78	2.00	0.62	0.76	0.77	5333	708	4	0	2	0	0	logfile
✔	6ZWM	11488	2023-09-29	2020-07-28	3.2	3.86	3.41	3.7	0.005	0.85	1.0	0.05	15.28	0.01	2.242	3.88	1.57	3.7	96.3	0.0	-3.77	0.79	0.79	0.90	3.7	0.003	0.64	0.0	0.04	16.31	0.00	2.090	8.60	0.21	3.5	96.5	0.0	0.49	0.62	0.76	0.76	0.77	56947	7437	14	0	10	0	0	logfile
✔	8DLF	27500	2023-09-30	2022-07-07	3.23	3.07	3.22	3.0	0.009	1.29	0.0	0.16	25.55	0.01	2.103	35.48	8.48	8.3	90.2	1.4	-1.74	0.60	0.48	0.90	3.0	0.004	0.75	0.0	0.05	26.10	0.01	2.165	24.76	0.58	9.1	90.0	0.8	-2.20	1.71	0.66	0.57	0.77	7167	631	10	112	0	4	0	logfile
✔	7P1J	13162	2023-09-28	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.003	0.87	0.0	0.04	14.68	0.00	2.227	16.91	0.72	6.3	93.7	0.0	0.73	1.43	0.66	0.74	0.77	6502	868	2	0	0	0	0	logfile
✔	6Z3T	11064	2023-09-27	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.90	1.0	0.07	17.55	0.01	2.284	6.72	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.005	1.17	0.0	0.04	18.69	0.01	2.149	16.73	2.14	8.6	91.4	0.0	-2.15	0.93	0.21	0.66	0.77	3608	441	4	0	21	0	0	logfile
✔	6WU0	21901	2023-09-28	2020-05-04	3.59	3.92	—	3.9	0.003	0.65	0.0	0.04	13.43	0.00	2.211	10.57	0.00	6.0	94.0	0.0	-1.89	0.56	0.63	0.78	3.9	0.004	0.81	0.0	0.04	15.86	0.01	2.104	14.65	0.76	7.8	92.2	0.0	-0.03	0.53	0.54	0.64	0.78	6340	854	1	0	0	0	0	logfile
✔	8DMo	27545	2023-09-29	2022-07-08	3.9	5.15	3.90	4.1	0.003	0.63	0.0	0.04	14.36	0.00	2.239	9.02	0.00	3.0	96.9	0.1	1.78	0.74	0.67	0.80	4.2	0.003	0.79	0.0	0.04	16.03	0.00	2.210	13.51	0.10	3.8	96.2	0.1	1.71	0.64	0.86	0.87	0.78	8912	1150	2	0	0	0	0	logfile
✔	8FA2	28948	2023-09-27	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.45	0.0	0.04	14.46	0.00	2.218	8.87	0.67	0.0	100.0	0.0	5.30	0.38	0.76	0.79	0.78	2577	342	6	0	0	0	0	logfile
✔	8CE5	16599	2023-09-29	2023-02-01	3.62	3.94	3.59	4.0	0.008	1.42	0.0	0.05	17.40	0.01	2.072	9.37	0.32	4.1	95.5	0.4	-1.59	0.59	0.73	0.72	4.0	0.004	0.70	0.0	0.04	17.42	0.01	1.951	11.18	0.32	4.1	95.8	0.1	0.26	0.45	0.64	0.77	0.78	8979	1146	8	0	4	0	0	logfile
✔	8FZR	29638	2023-09-28	2023-01-29	3.6	5.09	4.10	4.1	0.002	0.48	0.0	0.03	15.49	0.00	2.234	12.34	6.97	4.6	94.4	1.0	-1.87	0.52	0.24	0.50	4.3	0.004	0.78	0.0	0.04	19.19	0.00	2.080	35.03	0.00	8.0	91.8	0.2	-2.33	2.29	0.83	0.67	0.78	5711	503	3	77	1	0	0	logfile
✔	8FWK	29511	2023-09-29	2023-01-22	3.5	4.25	3.71	4.0	0.005	1.07	2.0	0.06	12.40	0.01	2.289	13.87	1.29	11.6	87.2	1.2	-4.60	0.66	0.72	0.53	4.0	0.003	0.74	0.0	0.04	15.19	0.00	2.133	11.92	0.20	11.7	88.1	0.3	-0.86	2.37	0.68	0.77	0.78	9462	1194	2	0	0	0	0	logfile
✔	7Ro0	24584	2023-09-28	2021-07-30	3.75	3.86	—	3.8	0.008	1.03	0.0	0.06	14.95	0.01	2.202	5.07	0.74	6.3	93.7	0.0	-5.18	0.69	0.84	1.25	3.8	0.003	0.67	0.0	0.04	15.87	0.01	2.089	7.76	0.59	4.3	95.7	0.0	-0.45	0.46	0.67	0.83	0.78	6742	898	2	0	0	0	0	logfile
✔	8DWJ	27756	2023-09-27	2022-08-01	3.9	3.19	3.82	3.1	0.005	1.05	0.0	0.06	15.49	0.01	2.218	13.71	0.33	5.9	94.1	0.0	-2.71	0.33	0.57	0.88	3.1	0.003	0.72	0.0	0.05	17.63	0.01	2.225	19.40	0.00	6.8	93.2	0.0	-1.57	2.76	0.32	0.57	0.80	3043	339	3	11	2	0	0	logfile
✔	7P9U	13266	2023-09-27	2021-07-28	3.7	3.88	3.67	3.8	0.003	0.68	0.0	0.04	14.10	0.00	2.188	11.55	0.00	6.8	92.8	0.4	1.01	0.51	0.75	1.02	3.8	0.003	0.77	0.0	0.04	16.17	0.00	2.152	13.54	0.93	6.6	93.2	0.2	0.53	0.41	0.52	0.75	0.80	3943	503	2	0	0	0	0	logfile
✔	7EFo	31088	2023-09-28	2021-03-22	3.85	3.87	—	3.9	0.010	1.20	1.0	0.15	17.15	0.01	2.071	58.70	6.18	7.1	92.8	0.1	-2.21	0.52	0.71	1.44	3.9	0.003	0.82	0.0	0.05	17.03	0.00	2.131	19.46	0.39	6.3	93.7	0.0	-1.13	1.26	0.54	0.72	0.80	7306	916	5	0	1	0	0	logfile
✔	6R81	4749	2023-09-29	2019-03-30	3.9	4.63	—	4.4	0.011	1.50	6.0	0.07	16.43	0.01	1.538	14.26	1.25	11.5	88.1	0.4	-5.27	0.71	0.82	1.01	4.4	0.003	0.89	0.0	0.04	17.89	0.00	2.003	15.53	0.21	9.7	90.3	0.0	-1.62	2.23	0.69	0.80	0.80	8861	1141	4	0	4	0	0	logfile
✔	7PSM	13614	2023-09-29	2021-09-23	3.4	3.99	—	3.9	0.008	1.04	0.0	0.05	15.59	0.01	2.078	3.51	0.00	3.7	96.3	0.0	-3.29	0.63	0.80	1.18	3.9	0.003	0.58	0.0	0.04	16.50	0.00	1.895	7.73	0.30	2.4	97.6	0.0	1.30	0.43	0.59	0.77	0.81	9394	1170	4	0	6	0	0	logfile

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