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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6M3W | 30072 | 2023-09-28 | 2020-03-04 | 3.9 | 4.04 | — | 3.9 | 0.011 | 1.31 | 0.0 | 0.08 | 11.59 | 0.01 | 2.264 | 9.72 | 0.66 | 11.1 | 88.9 | 0.0 | -4.25 | 0.82 | 0.78 | 1.15 | 3.9 | 0.004 | 0.80 | 0.0 | 0.06 | 16.07 | 0.01 | 2.138 | 15.98 | 1.00 | 7.5 | 92.5 | 0.0 | -1.66 | 0.95 | 0.82 | 0.78 | 0.75 | 8307 | 1032 | 6 | 0 | 24 | 0 | 0 | logfile |
✔ | 7PN1 | 13545 | 2023-09-30 | 2021-09-04 | 3.9 | 4.15 | 3.83 | 4.0 | 0.002 | 0.57 | 0.0 | 0.04 | 12.95 | 0.00 | 2.053 | 6.26 | 0.00 | 2.8 | 97.2 | 0.0 | 1.31 | 0.61 | 0.80 | 1.17 | 4.0 | 0.002 | 0.54 | 0.0 | 0.04 | 14.49 | 0.00 | 1.939 | 7.42 | 0.18 | 2.6 | 97.4 | 0.0 | 1.52 | 0.97 | 0.60 | 0.80 | 0.75 | 10384 | 657 | 1 | 0 | 0 | 0 | 5237 | logfile |
✔ | 6RiU | 4898 | 2023-09-27 | 2019-04-25 | 3.9 | 6.21 | 2.04 | 7.0 | 0.008 | 1.19 | 0.0 | 0.09 | 15.19 | 0.01 | 2.182 | 5.20 | 0.00 | 8.4 | 91.6 | 0.0 | -5.77 | 0.59 | 0.69 | 0.56 | 7.1 | 0.002 | 0.64 | 0.0 | 0.03 | 15.97 | 0.00 | 2.064 | 12.47 | 0.00 | 3.9 | 96.1 | 0.0 | -0.16 | 1.43 | 0.61 | 0.75 | 0.76 | 2882 | 182 | 2 | 0 | 0 | 0 | 1430 | logfile |
✔ | 7MK2 | 23884 | 2023-09-28 | 2021-04-21 | 3.8 | 3.60 | 3.84 | 3.6 | 0.004 | 0.69 | 0.0 | 0.04 | 14.23 | 0.00 | 2.228 | 8.87 | 0.00 | 7.7 | 92.3 | 0.0 | -1.60 | 0.63 | 0.77 | 0.81 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 15.99 | 0.00 | 2.276 | 8.50 | 0.35 | 4.4 | 95.6 | 0.0 | -0.78 | 2.00 | 0.62 | 0.76 | 0.77 | 5333 | 708 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6ZWM | 11488 | 2023-09-29 | 2020-07-28 | 3.2 | 3.86 | 3.41 | 3.7 | 0.005 | 0.85 | 1.0 | 0.05 | 15.28 | 0.01 | 2.242 | 3.88 | 1.57 | 3.7 | 96.3 | 0.0 | -3.77 | 0.79 | 0.79 | 0.90 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 16.31 | 0.00 | 2.090 | 8.60 | 0.21 | 3.5 | 96.5 | 0.0 | 0.49 | 0.62 | 0.76 | 0.76 | 0.77 | 56947 | 7437 | 14 | 0 | 10 | 0 | 0 | logfile |
✔ | 8DLF | 27500 | 2023-09-30 | 2022-07-07 | 3.23 | 3.07 | 3.22 | 3.0 | 0.009 | 1.29 | 0.0 | 0.16 | 25.55 | 0.01 | 2.103 | 35.48 | 8.48 | 8.3 | 90.2 | 1.4 | -1.74 | 0.60 | 0.48 | 0.90 | 3.0 | 0.004 | 0.75 | 0.0 | 0.05 | 26.10 | 0.01 | 2.165 | 24.76 | 0.58 | 9.1 | 90.0 | 0.8 | -2.20 | 1.71 | 0.66 | 0.57 | 0.77 | 7167 | 631 | 10 | 112 | 0 | 4 | 0 | logfile |
✔ | 7P1J | 13162 | 2023-09-28 | 2021-07-01 | 3.04 | 4.02 | 2.96 | 4.0 | 0.002 | 0.48 | 0.0 | 0.03 | 8.89 | 0.00 | 2.305 | 5.96 | 2.29 | 3.5 | 96.5 | 0.0 | 2.14 | 0.65 | 0.71 | 0.64 | 4.0 | 0.003 | 0.87 | 0.0 | 0.04 | 14.68 | 0.00 | 2.227 | 16.91 | 0.72 | 6.3 | 93.7 | 0.0 | 0.73 | 1.43 | 0.66 | 0.74 | 0.77 | 6502 | 868 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z3T | 11064 | 2023-09-27 | 2020-05-21 | 2.69 | 3.99 | 3.36 | 3.9 | 0.010 | 1.90 | 1.0 | 0.07 | 17.55 | 0.01 | 2.284 | 6.72 | 1.60 | 9.6 | 90.2 | 0.2 | -5.84 | 0.21 | 0.59 | 1.55 | 3.9 | 0.005 | 1.17 | 0.0 | 0.04 | 18.69 | 0.01 | 2.149 | 16.73 | 2.14 | 8.6 | 91.4 | 0.0 | -2.15 | 0.93 | 0.21 | 0.66 | 0.77 | 3608 | 441 | 4 | 0 | 21 | 0 | 0 | logfile |
✔ | 6WU0 | 21901 | 2023-09-28 | 2020-05-04 | 3.59 | 3.92 | — | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 13.43 | 0.00 | 2.211 | 10.57 | 0.00 | 6.0 | 94.0 | 0.0 | -1.89 | 0.56 | 0.63 | 0.78 | 3.9 | 0.004 | 0.81 | 0.0 | 0.04 | 15.86 | 0.01 | 2.104 | 14.65 | 0.76 | 7.8 | 92.2 | 0.0 | -0.03 | 0.53 | 0.54 | 0.64 | 0.78 | 6340 | 854 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DMo | 27545 | 2023-09-29 | 2022-07-08 | 3.9 | 5.15 | 3.90 | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 14.36 | 0.00 | 2.239 | 9.02 | 0.00 | 3.0 | 96.9 | 0.1 | 1.78 | 0.74 | 0.67 | 0.80 | 4.2 | 0.003 | 0.79 | 0.0 | 0.04 | 16.03 | 0.00 | 2.210 | 13.51 | 0.10 | 3.8 | 96.2 | 0.1 | 1.71 | 0.64 | 0.86 | 0.87 | 0.78 | 8912 | 1150 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FA2 | 28948 | 2023-09-27 | 2022-11-25 | 2.82 | 2.48 | 3.15 | 2.1 | 0.006 | 0.55 | 0.0 | 0.04 | 13.54 | 0.00 | 2.297 | 6.56 | 0.00 | 1.8 | 98.2 | 0.0 | -0.12 | 0.76 | 0.79 | 0.72 | 2.0 | 0.003 | 0.45 | 0.0 | 0.04 | 14.46 | 0.00 | 2.218 | 8.87 | 0.67 | 0.0 | 100.0 | 0.0 | 5.30 | 0.38 | 0.76 | 0.79 | 0.78 | 2577 | 342 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CE5 | 16599 | 2023-09-29 | 2023-02-01 | 3.62 | 3.94 | 3.59 | 4.0 | 0.008 | 1.42 | 0.0 | 0.05 | 17.40 | 0.01 | 2.072 | 9.37 | 0.32 | 4.1 | 95.5 | 0.4 | -1.59 | 0.59 | 0.73 | 0.72 | 4.0 | 0.004 | 0.70 | 0.0 | 0.04 | 17.42 | 0.01 | 1.951 | 11.18 | 0.32 | 4.1 | 95.8 | 0.1 | 0.26 | 0.45 | 0.64 | 0.77 | 0.78 | 8979 | 1146 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 8FZR | 29638 | 2023-09-28 | 2023-01-29 | 3.6 | 5.09 | 4.10 | 4.1 | 0.002 | 0.48 | 0.0 | 0.03 | 15.49 | 0.00 | 2.234 | 12.34 | 6.97 | 4.6 | 94.4 | 1.0 | -1.87 | 0.52 | 0.24 | 0.50 | 4.3 | 0.004 | 0.78 | 0.0 | 0.04 | 19.19 | 0.00 | 2.080 | 35.03 | 0.00 | 8.0 | 91.8 | 0.2 | -2.33 | 2.29 | 0.83 | 0.67 | 0.78 | 5711 | 503 | 3 | 77 | 1 | 0 | 0 | logfile |
✔ | 8FWK | 29511 | 2023-09-29 | 2023-01-22 | 3.5 | 4.25 | 3.71 | 4.0 | 0.005 | 1.07 | 2.0 | 0.06 | 12.40 | 0.01 | 2.289 | 13.87 | 1.29 | 11.6 | 87.2 | 1.2 | -4.60 | 0.66 | 0.72 | 0.53 | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 15.19 | 0.00 | 2.133 | 11.92 | 0.20 | 11.7 | 88.1 | 0.3 | -0.86 | 2.37 | 0.68 | 0.77 | 0.78 | 9462 | 1194 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Ro0 | 24584 | 2023-09-28 | 2021-07-30 | 3.75 | 3.86 | — | 3.8 | 0.008 | 1.03 | 0.0 | 0.06 | 14.95 | 0.01 | 2.202 | 5.07 | 0.74 | 6.3 | 93.7 | 0.0 | -5.18 | 0.69 | 0.84 | 1.25 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 15.87 | 0.01 | 2.089 | 7.76 | 0.59 | 4.3 | 95.7 | 0.0 | -0.45 | 0.46 | 0.67 | 0.83 | 0.78 | 6742 | 898 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DWJ | 27756 | 2023-09-27 | 2022-08-01 | 3.9 | 3.19 | 3.82 | 3.1 | 0.005 | 1.05 | 0.0 | 0.06 | 15.49 | 0.01 | 2.218 | 13.71 | 0.33 | 5.9 | 94.1 | 0.0 | -2.71 | 0.33 | 0.57 | 0.88 | 3.1 | 0.003 | 0.72 | 0.0 | 0.05 | 17.63 | 0.01 | 2.225 | 19.40 | 0.00 | 6.8 | 93.2 | 0.0 | -1.57 | 2.76 | 0.32 | 0.57 | 0.80 | 3043 | 339 | 3 | 11 | 2 | 0 | 0 | logfile |
✔ | 7P9U | 13266 | 2023-09-27 | 2021-07-28 | 3.7 | 3.88 | 3.67 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 14.10 | 0.00 | 2.188 | 11.55 | 0.00 | 6.8 | 92.8 | 0.4 | 1.01 | 0.51 | 0.75 | 1.02 | 3.8 | 0.003 | 0.77 | 0.0 | 0.04 | 16.17 | 0.00 | 2.152 | 13.54 | 0.93 | 6.6 | 93.2 | 0.2 | 0.53 | 0.41 | 0.52 | 0.75 | 0.80 | 3943 | 503 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EFo | 31088 | 2023-09-28 | 2021-03-22 | 3.85 | 3.87 | — | 3.9 | 0.010 | 1.20 | 1.0 | 0.15 | 17.15 | 0.01 | 2.071 | 58.70 | 6.18 | 7.1 | 92.8 | 0.1 | -2.21 | 0.52 | 0.71 | 1.44 | 3.9 | 0.003 | 0.82 | 0.0 | 0.05 | 17.03 | 0.00 | 2.131 | 19.46 | 0.39 | 6.3 | 93.7 | 0.0 | -1.13 | 1.26 | 0.54 | 0.72 | 0.80 | 7306 | 916 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6R81 | 4749 | 2023-09-29 | 2019-03-30 | 3.9 | 4.63 | — | 4.4 | 0.011 | 1.50 | 6.0 | 0.07 | 16.43 | 0.01 | 1.538 | 14.26 | 1.25 | 11.5 | 88.1 | 0.4 | -5.27 | 0.71 | 0.82 | 1.01 | 4.4 | 0.003 | 0.89 | 0.0 | 0.04 | 17.89 | 0.00 | 2.003 | 15.53 | 0.21 | 9.7 | 90.3 | 0.0 | -1.62 | 2.23 | 0.69 | 0.80 | 0.80 | 8861 | 1141 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PSM | 13614 | 2023-09-29 | 2021-09-23 | 3.4 | 3.99 | — | 3.9 | 0.008 | 1.04 | 0.0 | 0.05 | 15.59 | 0.01 | 2.078 | 3.51 | 0.00 | 3.7 | 96.3 | 0.0 | -3.29 | 0.63 | 0.80 | 1.18 | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 16.50 | 0.00 | 1.895 | 7.73 | 0.30 | 2.4 | 97.6 | 0.0 | 1.30 | 0.43 | 0.59 | 0.77 | 0.81 | 9394 | 1170 | 4 | 0 | 6 | 0 | 0 | logfile |