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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8X5X | 38074 | 2024-03-10 | 2023-11-20 | 3.5 | 3.67 | 4.06 | 3.8 | 0.004 | 0.77 | 0.0 | 0.04 | 14.15 | 0.00 | 2.094 | 14.97 | 0.43 | 5.3 | 94.7 | 0.0 | 1.03 | 0.42 | 0.53 | 1.42 | 3.8 | 0.003 | 0.76 | 0.0 | 0.04 | 17.57 | 0.00 | 2.257 | 12.40 | 4.31 | 4.9 | 95.1 | 0.0 | 1.16 | 0.80 | 0.44 | 0.57 | 0.33 | 2105 | 256 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DNC | 7970 | 2024-03-01 | 2018-06-06 | 3.7 | 6.35 | — | 4.1 | 0.008 | 1.14 | 2.0 | 0.09 | 22.18 | 0.01 | 1.764 | 6.82 | 1.11 | 13.5 | 84.5 | 2.0 | -4.52 | 0.87 | 0.73 | 0.26 | 4.1 | 0.006 | 0.77 | 0.0 | 0.04 | 23.73 | 0.01 | 1.921 | 38.39 | 2.65 | 10.6 | 89.3 | 0.1 | -1.80 | 3.09 | 0.96 | 0.91 | 0.33 | 152438 | 6520 | 59 | 4735 | 0 | 0 | 0 | logfile |
✔ | 6EU2 | 3957 | 2024-03-23 | 2017-10-27 | 3.4 | 3.45 | — | 6.0 | 0.004 | 1.04 | 0.0 | 0.06 | 11.35 | 0.01 | 1.787 | 5.04 | 0.40 | 13.0 | 86.5 | 0.5 | -5.22 | 0.27 | 0.04 | 0.18 | 3.4 | 0.006 | 1.00 | 2.0 | 0.05 | 15.52 | 0.01 | 1.818 | 17.85 | 2.02 | 11.9 | 87.8 | 0.3 | -2.67 | 1.60 | 0.61 | 0.58 | 0.33 | 38329 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 7CR4 | 30447 | 2024-03-16 | 2020-08-12 | 3.9 | 4.24 | — | 3.9 | 0.008 | 0.65 | 0.0 | 0.04 | 13.14 | 0.00 | 1.833 | 102.74 | 0.00 | 4.6 | 95.4 | 0.0 | -2.89 | 0.59 | 0.76 | 0.53 | 3.9 | 0.004 | 0.86 | 0.0 | 0.04 | 16.40 | 0.00 | 2.121 | 23.63 | 2.86 | 2.6 | 97.4 | 0.0 | 0.74 | 1.40 | 0.56 | 0.72 | 0.34 | 15988 | 1968 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 7RX0 | 24721 | 2024-03-14 | 2021-08-20 | 3.89 | 4.63 | — | 4.5 | 0.006 | 0.85 | 1.0 | 0.05 | 15.61 | 0.00 | 1.666 | 29.17 | 0.00 | 7.1 | 92.9 | 0.0 | -2.61 | 0.60 | 0.82 | 0.77 | 4.5 | 0.003 | 0.82 | 0.0 | 0.04 | 16.82 | 0.00 | 2.057 | 19.99 | 3.33 | 4.0 | 96.0 | 0.0 | -0.43 | 0.79 | 0.59 | 0.82 | 0.34 | 9673 | 1182 | 7 | 0 | 83 | 0 | 0 | logfile |
✔ | 6TGN | 10499 | 2024-03-10 | 2019-11-17 | 3.9 | 3.83 | — | 4.0 | 0.010 | 1.73 | 0.0 | 0.12 | 11.93 | 0.01 | 2.161 | 5.17 | 1.39 | 4.7 | 95.3 | 0.0 | -3.57 | 0.54 | 0.90 | 1.73 | 4.0 | 0.003 | 0.95 | 0.0 | 0.04 | 15.62 | 0.00 | 2.431 | 12.55 | 5.56 | 2.3 | 97.7 | 0.0 | 0.06 | 0.98 | 0.52 | 0.82 | 0.35 | 672 | 88 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XLB | 33276 | 2024-03-17 | 2022-04-21 | 3.44 | 3.67 | 3.47 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 19.23 | 0.01 | 2.236 | 8.13 | 0.19 | 7.7 | 92.3 | 0.0 | -3.68 | 0.63 | 0.71 | 0.83 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 19.76 | 0.01 | 2.222 | 7.15 | 6.07 | 8.3 | 91.7 | 0.0 | -3.13 | 0.27 | 0.64 | 0.72 | 0.35 | 19138 | 2352 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2024-03-14 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.29 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.90 | 0.0 | 0.05 | 16.67 | 0.01 | 2.017 | 24.21 | 3.48 | 15.3 | 84.1 | 0.6 | -3.68 | 0.72 | 0.23 | 0.46 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PMi | 20394 | 2024-03-11 | 2019-07-02 | 3.86 | 4.66 | — | 4.1 | 0.012 | 1.26 | 0.0 | 0.06 | 16.10 | 0.01 | 1.949 | 12.35 | 0.24 | 10.7 | 88.9 | 0.4 | -4.48 | 0.69 | 0.51 | 0.20 | 4.1 | 0.005 | 0.77 | 0.0 | 0.04 | 17.52 | 0.01 | 1.786 | 27.74 | 2.89 | 11.6 | 88.2 | 0.2 | -2.80 | 0.99 | 0.86 | 0.78 | 0.35 | 57985 | 3453 | 10 | 110 | 4 | 0 | 28610 | logfile |
✔ | 8BH6 | 16048 | 2024-03-25 | 2022-10-30 | 3.7 | 4.20 | 3.87 | 3.9 | 0.004 | 0.72 | 2.0 | 0.04 | 22.90 | 0.01 | 2.148 | 23.15 | 1.06 | 6.5 | 93.3 | 0.1 | -3.22 | 0.82 | 0.66 | 0.41 | 3.6 | 0.006 | 0.84 | 0.0 | 0.04 | 23.13 | 0.01 | 1.834 | 36.64 | 3.69 | 11.9 | 88.1 | 0.0 | -2.67 | 2.04 | 0.85 | 0.73 | 0.35 | 51548 | 2311 | 20 | 1547 | 0 | 0 | 0 | logfile |
✔ | 7W6T | 32335 | 2024-03-22 | 2021-12-02 | 3.85 | 4.45 | — | 3.9 | 0.006 | 0.87 | 0.0 | 0.05 | 14.59 | 0.01 | 2.034 | 32.67 | 0.29 | 10.7 | 89.2 | 0.1 | -4.74 | 0.64 | 0.67 | 0.30 | 3.9 | 0.003 | 0.76 | 0.0 | 0.04 | 16.20 | 0.00 | 2.085 | 22.40 | 2.59 | 6.5 | 93.5 | 0.0 | -1.53 | 0.71 | 0.63 | 0.65 | 0.35 | 31768 | 3934 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y7C | 10713 | 2024-03-17 | 2020-02-28 | 3.8 | 5.42 | 3.84 | 2.8 | 0.015 | 1.46 | 1.0 | 0.06 | 23.24 | 0.01 | 0.193 | 10.34 | 1.00 | 14.3 | 85.4 | 0.3 | -5.44 | 0.89 | 0.71 | 0.41 | 2.7 | 0.011 | 0.81 | 1.0 | 0.04 | 22.83 | 0.01 | 2.021 | 23.71 | 2.06 | 12.7 | 87.2 | 0.1 | -3.39 | 2.54 | 0.91 | 0.77 | 0.35 | 79690 | 5381 | 34 | 1735 | 0 | 0 | 0 | logfile |
✔ | 7S8U | 24922 | 2024-03-10 | 2021-09-19 | 3.7 | 3.97 | — | 3.9 | 0.008 | 1.19 | 1.0 | 0.07 | 14.00 | 0.01 | 2.243 | 13.10 | 4.56 | 8.3 | 90.5 | 1.2 | -1.14 | 0.48 | 0.59 | 0.59 | 3.9 | 0.003 | 0.77 | 0.0 | 0.04 | 16.55 | 0.00 | 2.152 | 16.26 | 5.44 | 9.2 | 90.5 | 0.3 | -0.14 | 1.35 | 0.51 | 0.61 | 0.36 | 5210 | 667 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TQM | 10555 | 2024-03-24 | 2019-12-16 | 3.8 | 4.34 | 3.78 | 20.0 | 0.014 | 0.98 | 0.0 | 0.12 | 16.14 | 0.01 | 2.083 | 4.06 | 1.40 | 14.5 | 85.5 | 0.0 | -5.95 | 0.30 | 0.07 | 0.30 | 3.9 | 0.003 | 0.74 | 0.0 | 0.04 | 16.19 | 0.00 | 1.885 | 14.29 | 1.93 | 9.1 | 90.9 | 0.0 | -3.43 | 1.27 | 0.38 | 0.24 | 0.36 | 39616 | 2578 | 6 | 0 | 4 | 0 | 19804 | logfile |
✔ | 7MVU | 24056 | 2024-03-19 | 2021-05-15 | 3.77 | 4.87 | 3.73 | 4.0 | 0.002 | 0.36 | 0.0 | 0.03 | 6.38 | 0.00 | 2.187 | 3.55 | 0.00 | 1.1 | 98.9 | 0.0 | -0.33 | 0.85 | 0.73 | 0.19 | 4.0 | 0.002 | 0.57 | 0.0 | 0.03 | 11.84 | 0.00 | 1.921 | 10.41 | 1.36 | 2.7 | 97.3 | 0.0 | 2.74 | 2.05 | 0.88 | 0.82 | 0.36 | 25645 | 1604 | 2 | 0 | 0 | 0 | 12841 | logfile |
✔ | 8DFU | 27414 | 2024-03-19 | 2022-06-22 | 3.44 | 3.84 | 3.52 | 3.8 | 0.010 | 0.92 | 0.0 | 1.18 | 31.93 | 0.00 | 2.461 | 3.48 | 0.00 | 1.2 | 98.8 | 0.0 | 1.08 | 0.59 | 0.85 | 1.18 | 3.8 | 0.003 | 0.53 | 0.0 | 0.03 | 29.65 | 0.01 | 2.303 | 5.51 | 0.55 | 1.3 | 98.7 | 0.0 | 4.56 | 1.18 | 0.58 | 0.84 | 0.37 | 22710 | 2520 | 56 | 0 | 60 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2024-03-14 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.96 | 0.01 | 0.317 | 210.72 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 18.35 | 0.01 | 1.266 | 30.60 | 4.47 | 4.1 | 95.9 | 0.0 | -0.17 | 2.46 | 0.78 | 0.74 | 0.37 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7A24 | 11615 | 2024-03-25 | 2020-08-16 | 3.8 | 3.92 | — | 3.8 | 0.009 | 1.16 | 33.0 | 1.08 | 15.35 | 0.01 | 0.850 | 22.90 | 2.62 | 9.6 | 90.1 | 0.3 | -3.10 | 0.53 | 0.47 | 0.12 | 3.8 | 0.009 | 1.78 | 0.0 | 0.33 | 17.69 | 0.01 | 1.855 | 28.20 | 4.76 | 9.2 | 90.7 | 0.1 | -2.05 | 1.20 | 0.60 | 0.60 | 0.37 | 49497 | 6253 | 46 | 0 | 17 | 0 | 0 | logfile |
✔ | 8FiX | 29212 | 2024-03-20 | 2022-12-17 | 3.9 | 4.15 | 3.95 | 3.9 | 0.003 | 0.69 | 0.0 | 0.05 | 14.47 | 0.00 | 1.933 | 14.02 | 0.07 | 12.8 | 87.1 | 0.2 | -2.81 | 0.79 | 0.65 | 0.34 | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 16.27 | 0.00 | 1.951 | 13.07 | 1.95 | 5.6 | 94.4 | 0.0 | -0.67 | 1.57 | 0.81 | 0.70 | 0.37 | 25943 | 3185 | 9 | 49 | 3 | 0 | 0 | logfile |
✔ | 6iC3 | 4452 | 2024-03-10 | 2018-12-02 | 3.3 | 4.00 | — | 3.9 | 0.010 | 1.26 | 0.0 | 0.06 | 16.17 | 0.01 | 2.277 | 9.22 | 1.39 | 16.9 | 83.1 | 0.0 | -5.61 | 0.76 | 0.80 | 1.39 | 3.9 | 0.005 | 0.90 | 0.0 | 0.04 | 17.37 | 0.01 | 2.197 | 21.26 | 3.30 | 16.3 | 83.7 | 0.0 | -5.21 | 1.22 | 0.72 | 0.77 | 0.37 | 5472 | 728 | 8 | 0 | 0 | 0 | 0 | logfile |