Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DGZ	30676	2022-12-12	2020-11-12	3.8	4.12	—	4.0	0.008	1.42	3.0	0.07	12.24	0.01	1.238	9.77	1.31	17.6	80.9	1.5	-6.15	0.80	0.71	1.44	3.9	0.003	0.88	0.0	0.04	14.45	0.01	2.110	13.46	0.41	16.4	83.3	0.3	-3.49	1.60	0.82	0.74	0.52	60921	7992	61	0	21	0	0	logfile
✔	7L2i	23129	2022-12-13	2020-12-17	3.7	3.97	3.73	3.9	0.012	0.90	0.0	0.20	12.59	0.01	2.137	2.01	0.75	7.8	92.2	0.0	-0.84	0.59	0.80	1.50	3.9	0.003	0.73	0.0	0.04	15.51	0.00	2.088	9.68	0.27	6.2	93.8	0.0	-0.17	1.84	0.57	0.80	0.53	17432	2124	8	0	4	0	0	logfile
✔	7XDT	33152	2022-12-12	2022-03-28	3.31	3.64	3.32	3.5	0.003	0.61	0.0	0.04	17.78	0.01	2.081	11.28	0.23	5.2	94.8	0.0	-0.03	0.72	0.65	0.76	3.5	0.003	0.63	0.0	0.04	18.47	0.00	2.085	12.89	0.34	5.8	94.2	0.0	0.23	0.54	0.76	0.71	0.53	41990	5310	10	0	0	0	0	logfile
✔	7ASA	11891	2022-12-11	2020-10-27	3.5	3.33	—	3.2	0.013	1.98	6.0	0.10	15.71	0.02	2.490	0.68	0.18	3.5	95.8	0.7	-2.30	0.75	0.75	1.26	3.2	0.003	0.73	0.0	0.04	17.24	0.00	2.065	14.97	0.73	5.3	94.6	0.1	-0.27	1.45	0.76	0.76	0.53	8104	750	5	116	0	0	0	logfile
✔	7KML	22926	2022-12-19	2020-11-03	3.8	4.97	3.83	3.8	0.018	1.86	0.0	0.10	10.58	0.01	2.415	0.82	0.39	1.9	98.1	0.0	0.45	0.89	0.76	0.63	3.9	0.004	0.74	0.0	0.04	14.20	0.00	2.081	21.53	0.31	4.8	95.2	0.0	-0.14	1.81	0.91	0.82	0.53	35136	4413	39	0	78	0	0	logfile
✔	6PZ9	20528	2022-12-11	2019-07-31	3.65	3.90	—	3.9	0.009	1.21	0.0	0.06	12.29	0.01	2.205	3.30	0.00	6.9	93.1	0.0	-3.88	0.65	0.67	2.19	3.9	0.003	0.68	0.0	0.04	14.52	0.00	2.205	7.10	0.98	4.3	95.7	0.0	-0.11	1.55	0.68	0.71	0.54	7773	1196	3	0	2	0	0	logfile
✔	6LAR	0862	2022-12-14	2019-11-13	3.7	4.08	—	4.0	0.007	0.99	0.0	0.05	15.43	0.01	1.858	20.25	5.47	13.2	86.4	0.4	-4.82	0.65	0.76	0.98	4.0	0.003	0.81	0.0	0.04	15.90	0.00	2.133	12.55	0.43	9.1	90.9	0.0	-0.75	1.21	0.64	0.77	0.54	22448	3020	10	0	0	0	0	logfile
✔	7S8U	24922	2022-12-11	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.20	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.004	0.86	0.0	0.05	16.45	0.01	2.081	17.98	1.93	8.4	91.1	0.5	-0.47	1.40	0.51	0.62	0.54	5210	667	1	0	0	0	0	logfile
✔	6RAW	4785	2022-12-20	2019-04-08	3.7	3.80	3.66	4.1	0.007	1.29	19.0	0.13	18.21	0.01	1.198	17.64	6.37	18.9	80.8	0.3	-5.55	0.47	0.49	0.14	3.8	0.004	0.84	0.0	0.05	18.41	0.01	2.107	15.65	0.77	12.1	87.9	0.0	-3.08	3.97	0.58	0.62	0.54	39710	4877	18	39	6	0	0	logfile
✔	6W62	21551	2022-12-11	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	14.23	0.00	1.883	16.36	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	4.0	0.003	0.78	0.0	0.04	16.83	0.00	2.177	16.29	0.59	9.8	90.2	0.0	-1.55	1.21	0.71	0.67	0.54	7387	910	2	24	0	0	0	logfile
✔	6X2N	22012	2022-12-19	2020-05-20	3.9	4.07	—	3.9	0.009	1.21	1.0	0.07	17.28	0.01	2.024	10.35	0.28	8.2	91.6	0.3	-2.89	0.76	0.77	0.56	3.9	0.004	0.72	0.0	0.04	18.27	0.00	1.952	16.84	0.39	7.4	92.6	0.0	-1.15	1.89	0.77	0.77	0.54	36079	4316	11	113	4	0	0	logfile
✔	7S5Y	24843	2022-12-14	2021-09-12	3.9	4.28	—	4.1	0.010	1.48	4.0	0.08	17.61	0.01	2.160	5.99	7.41	5.3	94.7	0.1	-5.12	0.64	0.81	0.64	4.1	0.005	0.83	0.0	0.05	16.88	0.00	1.809	16.29	0.52	5.2	94.8	0.0	0.06	1.53	0.65	0.84	0.55	21106	2686	5	0	4	0	0	logfile
✔	6E1N	8958	2022-12-12	2018-07-10	3.7	3.85	3.77	3.8	0.015	1.55	0.0	0.07	14.72	0.01	2.054	10.69	0.37	8.3	91.6	0.2	-5.21	0.49	0.72	1.63	3.8	0.003	0.79	0.0	0.04	15.91	0.00	2.210	12.94	0.47	5.8	94.2	0.0	-0.93	0.89	0.52	0.71	0.55	10682	1278	6	0	24	2	0	logfile
✔	6TLJ	10516	2022-12-14	2019-12-02	3.8	4.18	—	4.0	0.008	0.89	0.0	0.04	15.17	0.00	2.042	21.94	0.18	8.5	91.2	0.2	-3.19	0.86	0.78	0.60	4.0	0.004	0.76	0.0	0.04	16.90	0.00	2.045	18.59	0.22	7.1	92.8	0.1	0.16	2.02	0.86	0.78	0.55	72305	9200	23	0	0	0	0	logfile
✔	7RAK	24363	2022-12-12	2021-07-01	3.9	4.13	—	4.1	0.003	0.61	0.0	0.04	6.78	0.00	2.283	4.32	0.00	14.0	85.0	1.0	-3.87	0.62	0.61	0.78	4.1	0.002	0.64	0.0	0.04	12.11	0.00	2.204	7.78	0.31	4.5	95.3	0.2	-1.54	1.71	0.67	0.71	0.55	61296	8112	32	0	16	0	0	logfile
✔	3JBT	6480	2022-12-14	2015-10-15	3.8	3.89	—	3.8	0.008	1.31	7.0	0.07	19.56	0.01	1.919	70.93	18.24	8.0	88.3	3.6	-0.65	0.57	0.50	0.49	3.8	0.004	0.81	0.0	0.04	17.04	0.00	1.791	18.14	0.68	8.1	91.2	0.8	-1.53	1.76	0.69	0.66	0.55	70252	8736	28	0	21	0	0	logfile
✔	7F6V	31482	2022-12-11	2021-06-25	3.66	4.27	—	4.2	0.005	0.77	0.0	0.05	14.14	0.00	2.356	10.62	0.00	6.8	93.2	0.0	0.27	0.60	0.78	1.08	4.2	0.003	0.66	0.0	0.03	17.64	0.00	2.257	9.87	0.53	5.0	95.0	0.0	4.39	0.86	0.61	0.78	0.56	5314	626	4	0	2	0	0	logfile
✔	7XE0	33153	2022-12-22	2022-03-29	3.33	3.98	—	3.5	0.004	0.68	0.0	0.05	12.83	0.01	2.201	15.44	0.41	8.4	91.6	0.0	-1.40	0.79	0.76	0.57	3.5	0.003	0.69	0.0	0.04	14.86	0.00	2.136	14.86	0.38	8.1	91.9	0.0	-1.08	0.41	0.80	0.79	0.56	49715	6160	15	0	5	0	0	logfile
✔	7VFi	31955	2022-12-12	2021-09-13	3.98	5.00	—	4.6	0.008	1.01	0.0	0.05	15.29	0.01	2.216	10.24	0.21	6.6	93.4	0.0	-2.75	0.71	0.85	0.84	4.6	0.003	0.77	0.0	0.04	16.31	0.00	2.165	16.44	0.42	4.3	95.7	0.0	-0.04	1.00	0.71	0.84	0.56	8903	1149	5	0	3	0	0	logfile
✔	7NAT	12247	2022-12-22	2021-01-25	3.59	4.72	3.68	2.6	0.009	0.84	6.0	0.05	15.98	0.02	0.616	27.72	0.00	7.4	92.6	0.0	-3.28	0.90	0.81	0.72	2.5	0.006	0.76	0.0	0.04	16.82	0.01	1.772	35.30	0.94	5.8	94.2	0.0	-1.47	1.33	0.92	0.87	0.56	50921	2562	25	1430	66	0	0	logfile

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