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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7DGZ | 30676 | 2022-12-12 | 2020-11-12 | 3.8 | 4.12 | — | 4.0 | 0.008 | 1.42 | 3.0 | 0.07 | 12.24 | 0.01 | 1.238 | 9.77 | 1.31 | 17.6 | 80.9 | 1.5 | -6.15 | 0.80 | 0.71 | 1.44 | 3.9 | 0.003 | 0.88 | 0.0 | 0.04 | 14.45 | 0.01 | 2.110 | 13.46 | 0.41 | 16.4 | 83.3 | 0.3 | -3.49 | 1.60 | 0.82 | 0.74 | 0.52 | 60921 | 7992 | 61 | 0 | 21 | 0 | 0 | logfile |
✔ | 7L2i | 23129 | 2022-12-13 | 2020-12-17 | 3.7 | 3.97 | 3.73 | 3.9 | 0.012 | 0.90 | 0.0 | 0.20 | 12.59 | 0.01 | 2.137 | 2.01 | 0.75 | 7.8 | 92.2 | 0.0 | -0.84 | 0.59 | 0.80 | 1.50 | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 15.51 | 0.00 | 2.088 | 9.68 | 0.27 | 6.2 | 93.8 | 0.0 | -0.17 | 1.84 | 0.57 | 0.80 | 0.53 | 17432 | 2124 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7XDT | 33152 | 2022-12-12 | 2022-03-28 | 3.31 | 3.64 | 3.32 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 17.78 | 0.01 | 2.081 | 11.28 | 0.23 | 5.2 | 94.8 | 0.0 | -0.03 | 0.72 | 0.65 | 0.76 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 18.47 | 0.00 | 2.085 | 12.89 | 0.34 | 5.8 | 94.2 | 0.0 | 0.23 | 0.54 | 0.76 | 0.71 | 0.53 | 41990 | 5310 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ASA | 11891 | 2022-12-11 | 2020-10-27 | 3.5 | 3.33 | — | 3.2 | 0.013 | 1.98 | 6.0 | 0.10 | 15.71 | 0.02 | 2.490 | 0.68 | 0.18 | 3.5 | 95.8 | 0.7 | -2.30 | 0.75 | 0.75 | 1.26 | 3.2 | 0.003 | 0.73 | 0.0 | 0.04 | 17.24 | 0.00 | 2.065 | 14.97 | 0.73 | 5.3 | 94.6 | 0.1 | -0.27 | 1.45 | 0.76 | 0.76 | 0.53 | 8104 | 750 | 5 | 116 | 0 | 0 | 0 | logfile |
✔ | 7KML | 22926 | 2022-12-19 | 2020-11-03 | 3.8 | 4.97 | 3.83 | 3.8 | 0.018 | 1.86 | 0.0 | 0.10 | 10.58 | 0.01 | 2.415 | 0.82 | 0.39 | 1.9 | 98.1 | 0.0 | 0.45 | 0.89 | 0.76 | 0.63 | 3.9 | 0.004 | 0.74 | 0.0 | 0.04 | 14.20 | 0.00 | 2.081 | 21.53 | 0.31 | 4.8 | 95.2 | 0.0 | -0.14 | 1.81 | 0.91 | 0.82 | 0.53 | 35136 | 4413 | 39 | 0 | 78 | 0 | 0 | logfile |
✔ | 6PZ9 | 20528 | 2022-12-11 | 2019-07-31 | 3.65 | 3.90 | — | 3.9 | 0.009 | 1.21 | 0.0 | 0.06 | 12.29 | 0.01 | 2.205 | 3.30 | 0.00 | 6.9 | 93.1 | 0.0 | -3.88 | 0.65 | 0.67 | 2.19 | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 14.52 | 0.00 | 2.205 | 7.10 | 0.98 | 4.3 | 95.7 | 0.0 | -0.11 | 1.55 | 0.68 | 0.71 | 0.54 | 7773 | 1196 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 6LAR | 0862 | 2022-12-14 | 2019-11-13 | 3.7 | 4.08 | — | 4.0 | 0.007 | 0.99 | 0.0 | 0.05 | 15.43 | 0.01 | 1.858 | 20.25 | 5.47 | 13.2 | 86.4 | 0.4 | -4.82 | 0.65 | 0.76 | 0.98 | 4.0 | 0.003 | 0.81 | 0.0 | 0.04 | 15.90 | 0.00 | 2.133 | 12.55 | 0.43 | 9.1 | 90.9 | 0.0 | -0.75 | 1.21 | 0.64 | 0.77 | 0.54 | 22448 | 3020 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S8U | 24922 | 2022-12-11 | 2021-09-19 | 3.7 | 3.97 | — | 3.9 | 0.008 | 1.19 | 1.0 | 0.07 | 14.00 | 0.01 | 2.243 | 13.20 | 4.56 | 8.3 | 90.5 | 1.2 | -1.14 | 0.48 | 0.59 | 0.59 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 16.45 | 0.01 | 2.081 | 17.98 | 1.93 | 8.4 | 91.1 | 0.5 | -0.47 | 1.40 | 0.51 | 0.62 | 0.54 | 5210 | 667 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RAW | 4785 | 2022-12-20 | 2019-04-08 | 3.7 | 3.80 | 3.66 | 4.1 | 0.007 | 1.29 | 19.0 | 0.13 | 18.21 | 0.01 | 1.198 | 17.64 | 6.37 | 18.9 | 80.8 | 0.3 | -5.55 | 0.47 | 0.49 | 0.14 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 18.41 | 0.01 | 2.107 | 15.65 | 0.77 | 12.1 | 87.9 | 0.0 | -3.08 | 3.97 | 0.58 | 0.62 | 0.54 | 39710 | 4877 | 18 | 39 | 6 | 0 | 0 | logfile |
✔ | 6W62 | 21551 | 2022-12-11 | 2020-03-16 | 3.9 | 4.04 | — | 4.0 | 0.003 | 0.64 | 1.0 | 0.04 | 14.23 | 0.00 | 1.883 | 16.36 | 0.00 | 10.2 | 89.4 | 0.3 | -2.04 | 0.71 | 0.67 | 1.02 | 4.0 | 0.003 | 0.78 | 0.0 | 0.04 | 16.83 | 0.00 | 2.177 | 16.29 | 0.59 | 9.8 | 90.2 | 0.0 | -1.55 | 1.21 | 0.71 | 0.67 | 0.54 | 7387 | 910 | 2 | 24 | 0 | 0 | 0 | logfile |
✔ | 6X2N | 22012 | 2022-12-19 | 2020-05-20 | 3.9 | 4.07 | — | 3.9 | 0.009 | 1.21 | 1.0 | 0.07 | 17.28 | 0.01 | 2.024 | 10.35 | 0.28 | 8.2 | 91.6 | 0.3 | -2.89 | 0.76 | 0.77 | 0.56 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 18.27 | 0.00 | 1.952 | 16.84 | 0.39 | 7.4 | 92.6 | 0.0 | -1.15 | 1.89 | 0.77 | 0.77 | 0.54 | 36079 | 4316 | 11 | 113 | 4 | 0 | 0 | logfile |
✔ | 7S5Y | 24843 | 2022-12-14 | 2021-09-12 | 3.9 | 4.28 | — | 4.1 | 0.010 | 1.48 | 4.0 | 0.08 | 17.61 | 0.01 | 2.160 | 5.99 | 7.41 | 5.3 | 94.7 | 0.1 | -5.12 | 0.64 | 0.81 | 0.64 | 4.1 | 0.005 | 0.83 | 0.0 | 0.05 | 16.88 | 0.00 | 1.809 | 16.29 | 0.52 | 5.2 | 94.8 | 0.0 | 0.06 | 1.53 | 0.65 | 0.84 | 0.55 | 21106 | 2686 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 6E1N | 8958 | 2022-12-12 | 2018-07-10 | 3.7 | 3.85 | 3.77 | 3.8 | 0.015 | 1.55 | 0.0 | 0.07 | 14.72 | 0.01 | 2.054 | 10.69 | 0.37 | 8.3 | 91.6 | 0.2 | -5.21 | 0.49 | 0.72 | 1.63 | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 15.91 | 0.00 | 2.210 | 12.94 | 0.47 | 5.8 | 94.2 | 0.0 | -0.93 | 0.89 | 0.52 | 0.71 | 0.55 | 10682 | 1278 | 6 | 0 | 24 | 2 | 0 | logfile |
✔ | 6TLJ | 10516 | 2022-12-14 | 2019-12-02 | 3.8 | 4.18 | — | 4.0 | 0.008 | 0.89 | 0.0 | 0.04 | 15.17 | 0.00 | 2.042 | 21.94 | 0.18 | 8.5 | 91.2 | 0.2 | -3.19 | 0.86 | 0.78 | 0.60 | 4.0 | 0.004 | 0.76 | 0.0 | 0.04 | 16.90 | 0.00 | 2.045 | 18.59 | 0.22 | 7.1 | 92.8 | 0.1 | 0.16 | 2.02 | 0.86 | 0.78 | 0.55 | 72305 | 9200 | 23 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RAK | 24363 | 2022-12-12 | 2021-07-01 | 3.9 | 4.13 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 6.78 | 0.00 | 2.283 | 4.32 | 0.00 | 14.0 | 85.0 | 1.0 | -3.87 | 0.62 | 0.61 | 0.78 | 4.1 | 0.002 | 0.64 | 0.0 | 0.04 | 12.11 | 0.00 | 2.204 | 7.78 | 0.31 | 4.5 | 95.3 | 0.2 | -1.54 | 1.71 | 0.67 | 0.71 | 0.55 | 61296 | 8112 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 3JBT | 6480 | 2022-12-14 | 2015-10-15 | 3.8 | 3.89 | — | 3.8 | 0.008 | 1.31 | 7.0 | 0.07 | 19.56 | 0.01 | 1.919 | 70.93 | 18.24 | 8.0 | 88.3 | 3.6 | -0.65 | 0.57 | 0.50 | 0.49 | 3.8 | 0.004 | 0.81 | 0.0 | 0.04 | 17.04 | 0.00 | 1.791 | 18.14 | 0.68 | 8.1 | 91.2 | 0.8 | -1.53 | 1.76 | 0.69 | 0.66 | 0.55 | 70252 | 8736 | 28 | 0 | 21 | 0 | 0 | logfile |
✔ | 7F6V | 31482 | 2022-12-11 | 2021-06-25 | 3.66 | 4.27 | — | 4.2 | 0.005 | 0.77 | 0.0 | 0.05 | 14.14 | 0.00 | 2.356 | 10.62 | 0.00 | 6.8 | 93.2 | 0.0 | 0.27 | 0.60 | 0.78 | 1.08 | 4.2 | 0.003 | 0.66 | 0.0 | 0.03 | 17.64 | 0.00 | 2.257 | 9.87 | 0.53 | 5.0 | 95.0 | 0.0 | 4.39 | 0.86 | 0.61 | 0.78 | 0.56 | 5314 | 626 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7XE0 | 33153 | 2022-12-22 | 2022-03-29 | 3.33 | 3.98 | — | 3.5 | 0.004 | 0.68 | 0.0 | 0.05 | 12.83 | 0.01 | 2.201 | 15.44 | 0.41 | 8.4 | 91.6 | 0.0 | -1.40 | 0.79 | 0.76 | 0.57 | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 14.86 | 0.00 | 2.136 | 14.86 | 0.38 | 8.1 | 91.9 | 0.0 | -1.08 | 0.41 | 0.80 | 0.79 | 0.56 | 49715 | 6160 | 15 | 0 | 5 | 0 | 0 | logfile |
✔ | 7VFi | 31955 | 2022-12-12 | 2021-09-13 | 3.98 | 5.00 | — | 4.6 | 0.008 | 1.01 | 0.0 | 0.05 | 15.29 | 0.01 | 2.216 | 10.24 | 0.21 | 6.6 | 93.4 | 0.0 | -2.75 | 0.71 | 0.85 | 0.84 | 4.6 | 0.003 | 0.77 | 0.0 | 0.04 | 16.31 | 0.00 | 2.165 | 16.44 | 0.42 | 4.3 | 95.7 | 0.0 | -0.04 | 1.00 | 0.71 | 0.84 | 0.56 | 8903 | 1149 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7NAT | 12247 | 2022-12-22 | 2021-01-25 | 3.59 | 4.72 | 3.68 | 2.6 | 0.009 | 0.84 | 6.0 | 0.05 | 15.98 | 0.02 | 0.616 | 27.72 | 0.00 | 7.4 | 92.6 | 0.0 | -3.28 | 0.90 | 0.81 | 0.72 | 2.5 | 0.006 | 0.76 | 0.0 | 0.04 | 16.82 | 0.01 | 1.772 | 35.30 | 0.94 | 5.8 | 94.2 | 0.0 | -1.47 | 1.33 | 0.92 | 0.87 | 0.56 | 50921 | 2562 | 25 | 1430 | 66 | 0 | 0 | logfile |