Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Q5B	13831	2023-08-17	2021-11-03	3.98	3.20	—	3.1	0.004	0.91	0.0	0.05	21.10	0.01	2.231	9.48	0.10	13.2	86.5	0.2	-2.85	0.72	0.60	0.71	3.1	0.004	0.74	0.0	0.04	22.37	0.00	2.093	19.55	0.70	14.2	85.7	0.1	-2.33	1.64	0.74	0.65	0.48	21746	2255	13	168	0	0	0	logfile
✔	6RJU	4906	2023-08-09	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	7DUR	30867	2023-08-11	2021-01-11	3.3	4.35	—	3.8	0.007	1.12	0.0	0.07	15.87	0.01	2.048	13.63	4.61	4.0	96.0	0.0	-2.47	0.63	0.67	0.58	3.8	0.004	0.76	0.0	0.04	17.09	0.00	2.108	22.57	0.41	4.6	95.4	0.0	0.13	1.02	0.65	0.76	0.48	9211	1126	5	0	7	0	0	logfile
✔	8i6o	35201	2023-08-11	2023-01-29	3.8	4.30	4.03	4.2	0.003	0.66	0.0	0.04	15.30	0.00	2.135	8.12	0.61	4.3	95.7	0.0	0.14	0.74	0.81	0.86	4.2	0.003	0.74	0.0	0.04	17.51	0.00	2.219	8.34	1.33	4.3	95.7	0.0	0.59	1.20	0.73	0.82	0.48	9084	1196	5	0	0	0	0	logfile
✔	6oT3	20193	2023-08-30	2019-05-02	3.9	5.27	—	3.3	0.007	0.84	2.0	0.04	15.90	0.02	1.940	11.90	0.28	5.0	94.9	0.1	-3.85	0.92	0.88	0.62	3.3	0.005	0.74	0.0	0.04	16.73	0.01	1.810	32.91	0.85	6.5	93.5	0.0	-1.71	1.78	0.92	0.88	0.48	146899	6031	62	4642	14	0	0	logfile
✔	7S37	24818	2023-08-11	2021-09-04	3.2	3.10	3.27	2.3	0.006	1.04	0.0	0.05	12.76	0.01	2.211	4.66	0.11	3.7	96.3	0.0	-1.48	0.74	0.62	0.31	2.2	0.003	0.70	0.0	0.04	16.14	0.01	2.116	15.43	0.54	3.3	96.7	0.0	0.14	1.48	0.77	0.67	0.49	9392	1033	2	46	0	0	0	logfile
✔	7F5V	31468	2023-08-16	2021-06-22	3.6	4.00	3.42	3.9	0.005	0.69	0.0	0.04	13.93	0.00	2.076	16.85	0.18	6.9	93.0	0.1	-4.69	0.75	0.80	1.04	3.9	0.005	0.72	0.0	0.04	15.92	0.00	2.060	17.19	0.27	7.0	93.0	0.0	-1.42	1.22	0.74	0.79	0.49	20912	2760	4	0	0	0	0	logfile
✔	6ZiT	11229	2023-08-16	2020-06-26	3.49	3.68	4.20	3.5	0.005	0.74	0.0	0.04	15.19	0.01	1.968	23.60	0.00	10.6	89.4	0.0	-1.92	0.49	0.72	0.69	3.5	0.003	0.60	0.0	0.04	16.48	0.00	1.970	12.86	0.28	5.1	94.9	0.0	0.40	0.55	0.49	0.72	0.49	20646	1300	15	0	0	0	10446	logfile
✔	7K8V	22732	2023-08-19	2020-09-27	3.8	4.64	—	4.0	0.003	0.62	0.0	0.07	12.76	0.00	2.005	11.42	0.15	4.8	95.1	0.2	-2.90	0.81	0.74	0.42	4.1	0.003	0.66	0.0	0.04	14.56	0.00	2.141	15.09	0.26	5.3	94.6	0.1	-1.26	1.16	0.82	0.79	0.49	26248	3390	20	0	41	0	0	logfile
✔	5G2X	3331	2023-08-15	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.005	0.87	0.0	0.04	19.17	0.01	1.949	36.81	0.45	21.6	77.1	1.3	-5.19	1.94	0.80	0.66	0.50	19072	487	3	704	0	0	0	logfile
✔	8GAP	29903	2023-08-16	2023-02-23	3.8	4.94	3.68	3.3	0.002	0.58	0.0	0.04	17.67	0.00	2.199	12.59	0.21	3.7	96.3	0.0	1.14	0.92	0.84	0.38	3.3	0.004	0.65	0.0	0.04	18.39	0.00	2.086	18.63	0.36	5.2	94.7	0.1	0.95	1.45	0.92	0.86	0.50	20630	2032	9	173	1	0	0	logfile
✔	6Q2S	20579	2023-08-13	2019-08-08	3.8	4.19	—	4.0	0.008	1.06	0.0	0.06	8.60	0.01	1.366	3.84	0.13	7.6	92.4	0.0	-4.58	0.64	0.51	0.55	4.0	0.003	0.81	0.0	0.04	14.37	0.00	2.027	16.30	0.46	6.4	93.6	0.0	-1.97	1.86	0.74	0.70	0.50	13726	1734	10	0	22	0	0	logfile
✔	7T5P	25706	2023-08-13	2021-12-13	3.4	3.23	3.35	2.2	0.003	0.59	0.0	0.04	17.85	0.00	1.971	15.30	0.39	4.7	95.3	0.0	1.09	0.76	0.73	0.61	2.2	0.003	0.60	0.0	0.04	17.97	0.00	1.945	16.04	0.52	5.4	94.6	0.0	1.62	0.38	0.77	0.74	0.50	13597	822	2	0	0	0	6866	logfile
✔	7B0U	11971	2023-08-09	2020-11-22	3.86	4.15	—	4.1	0.004	0.71	4.0	0.04	12.48	0.00	2.196	16.72	0.54	5.8	94.2	0.0	-0.21	0.66	0.74	0.48	4.1	0.004	0.70	0.0	0.04	14.96	0.00	2.096	18.38	0.41	6.8	93.2	0.0	-0.05	0.46	0.67	0.75	0.50	105492	13320	60	0	0	0	0	logfile
✔	7XDT	33152	2023-08-11	2022-03-28	3.31	3.64	3.32	3.5	0.003	0.61	0.0	0.04	17.78	0.01	2.081	11.26	0.23	5.2	94.8	0.0	-0.03	0.72	0.65	0.76	3.5	0.003	0.62	0.0	0.04	18.54	0.00	2.052	12.79	0.54	5.4	94.6	0.0	0.47	0.55	0.76	0.70	0.50	41990	5310	10	0	0	0	0	logfile
✔	7AFo	11772	2023-08-22	2020-09-19	3.93	5.33	3.93	3.2	0.014	1.97	7.0	0.10	16.52	0.04	1.857	1.91	0.71	4.2	95.8	0.0	-1.97	0.91	0.88	1.13	3.1	0.004	0.72	0.0	0.04	16.37	0.01	1.904	25.82	0.29	4.5	95.4	0.1	-1.00	2.54	0.91	0.89	0.51	34134	1691	16	971	20	0	0	logfile
✔	7S1Y	24812	2023-08-10	2021-09-02	3.6	3.90	—	3.9	0.005	0.77	2.0	0.04	12.89	0.01	1.566	12.97	0.00	7.2	92.6	0.2	-0.33	0.40	0.55	0.33	3.9	0.003	0.72	2.0	0.04	14.86	0.00	2.189	13.61	0.52	6.9	92.9	0.2	-0.45	0.58	0.51	0.64	0.51	6580	948	4	0	6	0	0	logfile
✔	6NoG	0468	2023-08-16	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.55	0.01	2.239	6.27	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.004	0.63	0.0	0.03	26.62	0.00	2.153	11.24	0.32	2.2	97.8	0.0	1.84	1.76	0.86	0.85	0.51	14929	1124	12	292	0	0	0	logfile
✔	7EGC	31112	2023-08-11	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.43	0.01	1.402	24.31	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.004	0.81	0.0	0.05	16.66	0.00	1.986	17.27	0.40	6.5	93.4	0.2	-0.77	1.26	0.51	0.32	0.51	113129	13879	63	142	18	0	0	logfile
✔	6Qi8	4552	2023-08-13	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.85	0.0	0.04	17.56	0.00	2.143	15.66	0.19	7.7	92.3	0.0	-2.16	1.53	0.32	0.22	0.51	14789	1907	12	0	6	0	0	logfile

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