Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SHT	10205	2021-08-11	2019-08-08	2.73	2.88	2.78	2.8	0.015	1.55	0.0	0.07	17.80	0.01	0.000	10.21	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.004	0.60	0.0	0.04	19.62	0.00	0.000	4.56	2.03	2.3	97.7	0.0	4.90	1.75	0.72	0.84	2.58	37152	4176	24	0	48	1728	0	logfile
✔	6PUZ	20485	2021-08-08	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.87	0.0	0.05	19.45	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.005	0.54	0.0	0.04	21.38	0.00	0.000	8.91	0.68	1.8	98.2	0.0	0.65	0.41	0.71	0.90	4.04	11702	1230	28	72	10	340	0	logfile
✔	7A5V	11657	2021-08-09	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.65	0.0	0.09	13.53	0.02	0.000	2.30	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.69	0.0	0.05	14.03	0.00	0.000	5.43	0.29	0.7	99.3	0.0	1.84	0.44	0.72	0.85	6.36	21155	2275	30	0	85	1015	0	logfile
✔	6PUY	20484	2021-08-08	2019-07-18	2.8	3.15	2.88	3.1	0.015	0.90	0.0	0.06	19.62	0.01	0.000	4.31	0.19	3.0	97.0	0.0	-3.07	0.75	0.90	4.33	3.1	0.003	0.57	0.0	0.04	20.99	0.00	0.000	7.95	1.74	2.8	97.2	0.0	0.70	3.18	0.67	0.89	4.11	11784	1232	28	72	10	404	0	logfile
✔	6PUW	20483	2021-08-08	2019-07-18	2.9	3.21	2.93	3.1	0.013	0.77	0.0	0.04	19.88	0.00	0.000	7.60	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.003	0.54	0.0	0.04	21.54	0.00	0.000	8.02	0.82	3.5	96.5	0.0	0.71	0.88	0.70	0.90	4.37	11116	1170	28	72	10	312	0	logfile
✔	6PUT	20481	2021-08-08	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.83	0.0	0.05	19.07	0.01	0.000	5.03	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.004	0.56	0.0	0.04	20.55	0.00	0.000	7.33	0.51	1.9	98.1	0.0	0.83	0.88	0.67	0.89	4.25	10976	1170	28	68	8	308	0	logfile
✔	6NJo	9390	2021-08-08	2019-01-03	3.34	3.42	—	3.4	0.010	1.21	1.0	0.07	11.62	0.01	1.361	5.91	0.49	7.1	92.9	0.0	-4.27	0.80	0.83	3.46	3.4	0.006	0.80	0.0	0.05	14.70	0.01	0.060	9.83	0.59	6.5	93.5	0.0	-1.41	0.52	0.84	0.85	2.58	19090	2466	14	0	12	20	0	logfile
✔	6NJP	9391	2021-08-09	2019-01-03	3.29	3.37	—	3.3	0.009	1.18	0.0	0.07	11.57	0.01	1.276	6.16	0.67	6.4	93.6	0.0	-4.04	0.81	0.83	3.41	3.3	0.003	0.66	0.0	0.04	14.52	0.00	0.731	8.25	0.38	4.3	95.7	0.0	-0.85	1.16	0.84	0.85	2.47	19607	2530	15	0	12	21	0	logfile
✔	7NYX	12657	2021-08-10	2021-03-23	4.6	7.95	4.57	3.3	0.003	0.61	0.0	0.04	17.26	0.00	1.844	10.87	0.00	3.4	96.6	0.0	1.74	0.88	0.79	—	3.3	0.003	0.56	0.0	0.04	17.15	0.00	0.783	16.53	0.00	4.9	95.1	0.0	0.79	1.58	0.90	0.84	—	70784	4186	18	104	6	0	34688	logfile
✔	6ZP5	11336	2021-08-09	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.00	0.012	14.01	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.004	0.70	0.0	0.11	14.92	0.00	0.792	10.03	0.24	3.7	96.3	0.0	0.24	0.71	0.83	0.85	2.15	23615	2861	33	0	92	0	0	logfile
✔	6ZP7	11337	2021-08-09	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.00	0.008	15.90	0.52	3.0	97.0	0.0	-0.93	0.64	0.59	1.49	3.7	0.004	0.71	0.0	0.11	15.23	0.00	0.793	11.42	0.60	4.2	95.8	0.0	0.11	1.40	0.82	0.85	2.03	23615	2861	33	0	92	0	0	logfile
✔	5NCo	3617	2021-08-13	2017-03-06	4.8	5.02	—	4.8	0.007	1.08	0.0	0.05	15.62	0.00	1.168	8.50	9.43	3.1	96.8	0.1	-2.95	0.70	0.76	—	4.8	0.004	0.71	0.0	0.04	15.58	0.01	0.807	29.77	0.03	6.3	93.6	0.1	-0.45	1.77	0.71	0.84	—	101694	4738	43	3112	46	0	0	logfile
✔	5JUL	8177	2021-08-08	2016-05-10	4.4	4.41	—	4.3	0.012	1.51	16.0	0.06	10.59	0.01	1.568	32.86	0.18	16.6	80.8	2.5	-4.96	0.67	0.54	—	4.3	0.009	1.11	3.0	0.05	13.05	0.00	0.879	18.31	0.02	12.8	86.2	1.0	-3.44	2.16	0.69	0.58	—	161200	19728	32	0	16	0	0	logfile
✔	6AP1	8887	2021-08-08	2017-08-16	3.2	3.26	—	3.3	0.016	1.66	2.0	0.09	14.24	0.01	1.198	23.89	3.62	10.9	87.0	2.1	-4.53	0.62	0.58	1.49	3.2	0.009	1.00	1.0	0.04	16.50	0.01	0.913	12.09	0.10	5.7	94.0	0.3	-0.15	2.37	0.73	0.74	1.09	18838	2404	24	0	14	0	0	logfile
✔	6NDY	0443	2021-08-08	2018-12-14	3.6	3.70	—	3.6	0.004	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.003	0.72	0.0	0.04	16.26	0.01	0.940	11.65	0.59	6.1	93.9	0.0	0.08	1.44	0.79	0.80	0.93	12531	1596	11	0	20	0	0	logfile
✔	6PEK	20327	2021-08-08	2019-06-20	4.2	4.25	—	4.2	0.004	0.71	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.74	0.0	0.04	14.45	0.00	0.958	15.58	0.00	3.2	96.8	0.0	-0.07	1.47	0.72	0.77	—	11106	1405	11	0	13	0	0	logfile
✔	7NVX	12616	2021-08-09	2021-03-16	3.9	3.92	3.77	3.8	0.003	0.49	0.0	0.04	15.65	0.00	1.971	6.57	0.00	4.5	95.5	0.0	0.85	0.70	0.64	1.31	3.8	0.006	0.87	0.0	0.04	18.41	0.01	0.962	19.50	0.40	5.1	94.9	0.0	-0.62	0.94	0.71	0.66	1.29	23663	2796	18	50	35	0	0	logfile
✔	6GEJ	4395	2021-08-11	2018-04-26	3.6	3.77	—	3.7	0.002	0.61	0.0	0.04	18.57	0.00	1.491	9.03	3.93	4.6	95.4	0.0	-2.70	0.82	0.77	0.98	3.7	0.004	0.69	0.0	0.04	20.48	0.00	0.964	10.02	0.23	4.3	95.7	0.0	0.13	0.87	0.83	0.79	0.93	43702	4683	29	308	151	0	0	logfile
✔	6oo2	20142	2021-08-08	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	6.87	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.5	0.003	0.68	0.0	0.04	13.15	0.00	0.967	12.84	0.00	4.4	95.6	0.0	1.63	1.13	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile
✔	6U9V	20702	2021-08-09	2019-09-09	2.9	3.06	—	3.1	0.009	0.83	0.0	0.08	15.25	0.00	2.090	2.46	0.57	4.9	95.1	0.0	-1.99	0.64	0.76	3.46	3.1	0.003	0.61	0.0	0.04	16.24	0.00	0.994	7.63	1.43	7.2	92.8	0.0	-0.64	1.65	0.66	0.81	3.55	26701	1680	6	3	51	0	12634	logfile

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