Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5A9Z	6396	2022-07-10	2015-07-23	4.7	4.83	—	4.7	0.013	1.89	26.0	0.14	23.31	0.03	0.000	199.55	29.15	25.1	49.6	25.2	-7.73	0.81	0.65	—	4.7	0.006	1.00	0.0	0.05	19.23	0.01	0.000	40.34	0.22	21.3	76.3	2.3	-4.29	2.90	0.87	0.81	—	150547	6671	58	4527	131	0	0	logfile
✔	6SHT	10205	2022-07-07	2019-08-08	2.73	2.88	2.78	2.8	0.015	1.55	0.0	0.07	17.80	0.01	0.000	10.21	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.004	0.57	0.0	0.04	19.60	0.00	0.000	5.46	2.24	1.4	98.3	0.3	5.07	1.76	0.72	0.84	2.18	37152	4176	24	0	48	1728	0	logfile
✔	6PUT	20481	2022-07-03	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.82	0.0	0.05	19.07	0.01	0.000	5.22	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.005	0.58	0.0	0.04	20.73	0.00	0.000	8.58	1.21	1.7	98.3	0.0	0.61	0.88	0.65	0.89	4.26	10976	1170	28	68	8	308	0	logfile
✔	6NJo	9390	2022-07-04	2019-01-03	3.34	3.42	—	3.4	0.010	1.20	1.0	0.07	11.62	0.01	1.361	5.91	0.49	7.1	92.9	0.0	-4.27	0.80	0.83	3.46	3.4	0.003	0.68	0.0	0.04	14.74	0.00	0.155	8.95	0.29	4.8	95.2	0.0	-0.97	0.53	0.82	0.83	2.25	19090	2466	14	0	12	20	0	logfile
✔	6NJP	9391	2022-07-04	2019-01-03	3.29	3.37	—	3.3	0.009	1.17	0.0	0.07	11.57	0.01	1.276	6.18	0.67	6.4	93.6	0.0	-4.04	0.81	0.83	3.41	3.3	0.003	0.70	0.0	0.05	14.73	0.00	0.613	9.44	0.48	4.8	95.2	0.0	-1.19	1.15	0.83	0.85	2.70	19607	2530	15	0	12	21	0	logfile
✔	7BSV	30168	2022-07-03	2020-03-31	3.0	3.16	—	3.1	0.005	1.15	0.0	0.05	17.62	0.01	1.809	30.67	6.19	7.6	92.2	0.2	-6.02	0.61	0.86	4.20	3.1	0.003	0.89	0.0	0.04	18.05	0.00	0.760	9.90	3.34	5.2	94.8	0.0	-1.17	0.99	0.64	0.88	3.54	9339	1139	6	0	8	4	0	logfile
✔	6AP1	8887	2022-07-04	2017-08-16	3.2	3.26	—	3.3	0.016	1.66	2.0	0.09	14.24	0.01	1.198	24.29	3.62	10.9	87.0	2.1	-4.53	0.62	0.58	1.49	3.2	0.010	1.07	1.0	0.04	16.75	0.01	0.785	12.30	0.15	6.5	93.2	0.3	-0.35	2.36	0.68	0.66	1.23	18838	2404	24	0	14	0	0	logfile
✔	6ZP5	11336	2022-07-05	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.01	0.012	14.24	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.004	0.75	0.0	0.11	14.99	0.00	0.787	10.27	0.40	3.6	96.4	0.0	0.24	0.66	0.82	0.84	2.27	23615	2861	33	0	92	0	0	logfile
✔	6ZP7	11337	2022-07-05	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.01	0.008	16.13	0.52	3.0	97.0	0.0	-0.93	0.64	0.59	1.49	3.7	0.003	0.75	0.0	0.11	15.23	0.00	0.791	10.44	0.28	3.5	96.5	0.0	0.07	1.33	0.81	0.83	2.09	23615	2861	33	0	92	0	0	logfile
✔	6J51	0676	2022-07-08	2019-01-10	4.2	4.46	—	3.0	0.009	1.21	3.0	0.07	18.81	0.01	1.661	7.48	0.74	4.3	95.0	0.7	-1.68	0.74	0.62	—	3.0	0.005	0.75	0.0	0.04	19.15	0.00	0.867	15.02	0.00	3.8	96.1	0.1	0.65	1.73	0.82	0.77	—	47661	5122	36	337	11	0	0	logfile
✔	6oo2	20142	2022-07-04	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	7.03	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.5	0.004	0.74	0.0	0.04	12.97	0.00	0.867	17.94	0.00	5.8	94.2	0.0	1.38	1.01	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile
✔	6NDY	0443	2022-07-03	2018-12-14	3.6	3.70	—	3.6	0.005	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.004	0.76	0.0	0.04	16.50	0.01	0.877	12.25	0.30	6.1	93.9	0.0	-0.02	1.29	0.79	0.80	0.66	12531	1596	11	0	20	0	0	logfile
✔	7NVX	12616	2022-07-05	2021-03-16	3.9	3.92	3.77	3.8	0.003	0.49	0.0	0.04	15.65	0.00	1.971	6.69	0.00	4.5	95.5	0.0	0.85	0.70	0.64	1.31	3.8	0.009	0.99	2.0	0.04	18.09	0.01	0.878	20.76	0.32	4.5	95.4	0.0	-0.54	0.89	0.71	0.66	1.15	23663	2796	18	50	35	0	0	logfile
✔	7TDH	25829	2022-07-04	2021-12-31	4.0	4.95	4.67	4.5	0.003	0.77	0.0	0.04	13.63	0.00	2.254	4.69	0.00	5.1	94.9	0.0	-1.74	0.84	0.67	—	4.5	0.030	2.64	75.0	0.11	19.60	0.02	0.880	152.93	3.43	43.5	54.9	1.6	-7.27	2.44	0.88	0.83	—	117532	13060	8	0	3616	0	0	logfile
✔	7TDK	25832	2022-07-04	2021-12-31	3.8	4.07	3.86	3.8	0.004	0.87	0.0	0.04	15.75	0.01	2.210	5.03	0.46	5.7	94.1	0.1	-0.20	0.85	0.77	1.07	3.8	0.051	3.21	82.0	0.14	20.00	0.02	0.886	99.70	3.23	38.3	59.1	2.6	-7.46	2.33	0.89	0.86	1.21	117136	12936	8	0	3616	0	0	logfile
✔	6GEJ	4395	2022-07-07	2018-04-26	3.6	3.77	—	3.7	0.003	0.62	0.0	0.04	18.57	0.00	1.491	9.16	3.93	4.6	95.4	0.0	-2.70	0.82	0.77	0.98	3.7	0.005	0.84	0.0	0.04	20.68	0.01	0.891	11.32	0.40	4.8	95.2	0.0	-0.31	0.84	0.84	0.80	1.01	43702	4683	29	308	151	0	0	logfile
✔	7QWS	14193	2022-07-06	2022-01-25	3.4	3.09	—	7.2	0.002	0.46	0.0	0.03	14.64	0.00	2.011	9.49	1.65	3.7	96.3	0.0	0.47	0.23	0.02	-0.02	3.0	0.008	1.22	3.0	0.06	19.93	0.01	0.959	37.21	0.73	12.5	87.4	0.1	-3.55	1.98	0.49	0.54	0.44	137913	7047	55	3769	126	0	0	logfile
✔	6FTJ	4317	2022-07-10	2018-02-22	4.7	4.88	—	4.7	0.011	1.39	18.0	0.10	19.94	0.01	0.475	12.17	11.77	9.8	87.8	2.4	-4.05	0.63	0.62	—	4.7	0.006	0.96	0.0	0.05	18.77	0.01	0.965	41.39	0.04	10.9	88.6	0.5	-2.42	1.17	0.67	0.71	—	152111	8263	73	3938	461	0	0	logfile
✔	6T59	10380	2022-07-07	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	17.10	0.00	1.148	10.88	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.006	1.03	4.0	0.05	19.37	0.01	0.984	28.80	0.63	9.2	90.7	0.1	-2.66	1.99	0.57	0.55	0.42	143047	7383	64	3890	225	0	0	logfile
✔	5GAD	8000	2022-07-06	2015-11-24	3.7	4.17	—	3.9	0.009	1.11	1.0	0.05	15.93	0.01	1.737	9.28	10.34	3.5	96.5	0.1	-3.19	0.77	0.79	1.52	3.9	0.007	0.67	0.0	0.03	15.21	0.01	0.987	18.22	0.58	3.8	96.1	0.1	-0.19	1.60	0.81	0.88	1.37	98006	4087	49	3049	507	0	0	logfile

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