Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A5V	11657	2021-05-04	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.65	0.0	0.09	13.54	0.02	0.000	2.30	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.7	0.005	0.83	0.0	0.05	14.30	0.01	0.000	5.73	0.43	1.2	98.8	0.0	1.51	0.43	0.68	0.84	6.61	21155	2275	30	0	85	1015	0	logfile
✔	6SHT	10205	2021-05-06	2019-08-08	2.73	2.88	2.78	2.8	0.015	1.55	0.0	0.07	17.80	0.01	0.000	10.21	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.003	0.55	0.0	0.04	19.45	0.00	0.000	4.95	2.52	1.7	97.7	0.6	5.29	1.75	0.72	0.85	2.62	37152	4176	24	0	48	1728	0	logfile
✔	6PUW	20483	2021-05-04	2019-07-18	2.9	3.21	2.93	3.1	0.019	0.79	0.0	0.13	19.96	0.00	0.000	7.60	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.002	0.54	0.0	0.04	20.93	0.00	0.000	9.74	0.82	2.8	97.2	0.0	0.80	0.88	0.69	0.90	4.30	11116	1170	28	72	10	312	0	logfile
✔	6PUZ	20485	2021-05-04	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.87	0.0	0.05	19.46	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.004	0.50	0.0	0.04	21.03	0.00	0.000	7.65	0.58	1.7	98.3	0.0	0.70	0.39	0.70	0.91	4.04	11702	1230	28	72	10	340	0	logfile
✔	6PUY	20484	2021-05-04	2019-07-18	2.8	3.15	2.88	3.1	0.015	0.97	0.0	0.06	19.53	0.01	0.000	4.31	0.19	3.0	97.0	0.0	-3.07	0.75	0.90	4.33	3.1	0.004	0.61	0.0	0.04	20.60	0.00	0.000	8.80	1.16	2.5	97.5	0.0	0.61	2.40	0.64	0.88	3.85	11784	1232	28	72	10	404	0	logfile
✔	6PUT	20481	2021-05-04	2019-07-18	2.9	3.22	2.97	3.2	0.007	0.83	0.0	0.05	19.07	0.01	0.000	5.03	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.004	0.55	0.0	0.04	19.82	0.00	0.000	7.57	0.81	1.9	98.1	0.0	0.79	0.88	0.66	0.89	4.22	10976	1170	28	68	8	308	0	logfile
✔	6NJo	9390	2021-05-04	2019-01-03	3.34	3.42	—	3.4	0.010	1.21	1.0	0.07	11.62	0.01	1.361	5.91	0.49	7.1	92.9	0.0	-4.27	0.80	0.83	3.46	3.4	0.006	0.79	0.0	0.05	14.79	0.01	0.064	10.32	0.29	6.5	93.5	0.0	-1.39	0.53	0.82	0.85	2.58	19090	2466	14	0	12	20	0	logfile
✔	6RZA	10060	2021-05-04	2019-06-13	4.5	4.56	4.30	4.5	0.044	2.30	16.0	0.17	17.51	0.01	2.089	9.29	6.90	4.4	94.9	0.6	-2.20	0.60	0.71	—	4.5	0.013	1.34	0.0	0.06	15.45	0.01	0.266	59.91	0.00	4.2	95.7	0.1	-1.79	2.40	0.60	0.72	—	14908	1867	9	2	6	0	0	logfile
✔	5SYE	8321	2021-05-09	2016-08-10	3.5	4.25	—	4.1	0.046	2.04	0.0	0.22	18.30	0.01	0.638	17.48	4.54	5.7	92.9	1.4	-0.47	0.50	0.66	1.38	4.1	0.008	1.36	1.0	0.08	18.44	0.01	0.314	47.15	0.42	5.6	94.1	0.3	-0.28	0.96	0.55	0.82	1.35	178464	22178	104	26	104	0	0	logfile
✔	6NJP	9391	2021-05-04	2019-01-03	3.29	3.37	—	3.3	0.009	1.18	0.0	0.07	11.57	0.01	1.276	6.16	0.67	6.4	93.6	0.0	-4.04	0.81	0.83	3.41	3.3	0.002	0.63	0.0	0.04	14.51	0.00	0.500	8.18	0.29	3.9	96.1	0.0	-0.64	1.17	0.81	0.84	2.27	19607	2530	15	0	12	21	0	logfile
✔	6QUS	4643	2021-05-04	2019-02-28	3.7	3.90	—	3.9	0.044	1.76	0.0	0.14	12.26	0.01	2.027	5.57	0.13	6.2	93.8	0.0	-4.88	0.77	0.82	2.90	3.9	0.007	1.15	0.0	0.05	16.17	0.01	0.569	27.09	0.45	4.8	95.2	0.1	-3.53	3.21	0.78	0.83	2.52	14715	1844	9	2	6	0	0	logfile
✔	6MLQ	9140	2021-05-03	2018-09-27	4.2	4.98	—	4.9	0.040	1.61	0.0	0.13	12.96	0.02	0.597	14.11	1.54	9.6	90.4	0.0	-4.37	0.74	0.77	—	4.9	0.008	1.11	0.0	0.06	14.11	0.01	0.673	51.25	0.00	9.4	90.6	0.0	-3.79	0.98	0.73	0.77	—	9197	1164	6	1	5	0	0	logfile
✔	6TUP	10593	2021-05-05	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.5	0.034	2.29	0.0	0.20	26.66	0.01	0.685	106.74	1.62	3.4	96.6	0.0	-3.10	9.78	0.57	0.63	0.14	22400	2300	100	300	0	0	0	logfile
✔	5ND4	3622	2021-05-03	2017-03-07	4.4	5.55	—	5.5	0.039	1.93	11.0	0.24	21.74	0.01	1.678	25.87	15.57	14.5	77.1	8.3	-4.90	0.37	0.37	—	5.5	0.009	1.42	1.0	0.07	16.38	0.01	0.780	56.92	0.20	10.8	88.5	0.7	-3.62	1.95	0.47	0.64	—	9435	1175	6	1	6	0	0	logfile
✔	6ZPi	11340	2021-05-03	2020-07-08	4.5	4.63	—	4.4	0.039	1.69	3.0	0.12	15.44	0.01	1.667	13.68	0.00	4.6	95.4	0.0	-0.24	0.77	0.52	—	4.4	0.007	1.12	0.0	0.05	14.78	0.01	0.790	38.54	0.00	4.7	95.3	0.0	-0.38	0.97	0.83	0.74	—	9412	1184	6	1	5	0	0	logfile
✔	6ZP7	11337	2021-05-05	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.00	0.008	15.90	0.52	3.0	97.0	0.0	-0.93	0.64	0.59	1.49	3.7	0.005	0.74	0.0	0.11	15.35	0.00	0.794	12.58	0.28	4.4	95.6	0.0	-0.14	1.40	0.82	0.83	2.13	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2021-05-05	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.00	0.012	14.01	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.006	0.75	0.0	0.11	15.04	0.00	0.795	11.55	0.44	4.3	95.7	0.0	0.13	0.72	0.83	0.84	2.04	23615	2861	33	0	92	0	0	logfile
✔	5M5C	3444	2021-05-04	2016-10-21	4.8	5.57	—	5.4	0.044	1.73	0.0	0.13	11.63	0.01	2.060	7.99	0.06	4.2	95.8	0.0	-3.24	0.79	0.80	—	5.4	0.007	1.12	0.0	0.05	13.10	0.01	0.840	35.88	0.06	4.1	95.9	0.0	-2.35	0.91	0.79	0.79	—	14608	1826	11	2	6	8	0	logfile
✔	7LJR	23400	2021-05-05	2021-01-30	3.66	3.92	—	3.7	0.013	1.83	9.0	0.10	13.96	0.01	2.509	0.23	1.12	9.2	90.0	0.8	-1.91	0.69	0.65	1.95	3.7	0.008	0.90	0.0	0.05	14.93	0.01	0.873	12.99	0.03	6.7	93.2	0.1	-0.84	1.27	0.77	0.77	1.44	26291	3378	5	0	0	0	0	logfile
✔	5SYF	8322	2021-05-09	2016-08-11	3.5	4.01	—	4.0	0.045	2.00	26.0	0.16	16.60	0.01	0.392	16.56	3.37	4.9	94.7	0.4	-0.39	0.56	0.76	1.19	4.0	0.007	1.17	1.0	0.05	17.74	0.01	0.877	27.38	0.18	4.4	95.5	0.1	0.09	0.84	0.56	0.80	1.26	177268	22152	104	26	78	0	0	logfile

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