Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PUT	20481	2021-01-05	2019-07-18	2.9	3.22	2.97	3.2	0.007	0.83	0.0	0.05	19.07	0.01	0.000	5.03	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.002	0.50	0.0	0.04	17.74	0.00	0.000	7.95	0.00	2.2	97.8	0.0	1.27	0.91	0.66	0.87	4.04	10976	1170	28	68	8	308	0	logfile
✔	6PUY	20484	2021-01-05	2019-07-18	2.8	3.15	2.88	3.1	0.015	0.97	0.0	0.06	19.53	0.01	0.000	4.31	0.19	3.0	97.0	0.0	-3.07	0.75	0.90	4.33	3.1	0.003	0.61	0.0	0.04	18.46	0.00	0.000	7.32	0.00	2.8	97.2	0.0	0.66	3.97	0.66	0.87	4.08	11784	1232	28	72	10	404	0	logfile
✔	6PUW	20483	2021-01-05	2019-07-18	2.9	3.21	2.93	3.1	0.005	0.61	0.0	0.04	19.86	0.00	0.000	7.60	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.004	0.49	0.0	0.04	19.17	0.00	0.000	7.36	0.00	2.8	97.2	0.0	0.48	0.89	0.69	0.88	4.44	11116	1170	28	72	10	312	0	logfile
✔	6PUZ	20485	2021-01-05	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.87	0.0	0.05	19.46	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.005	0.53	0.0	0.04	18.81	0.00	0.000	7.52	0.00	2.2	97.8	0.0	0.76	0.40	0.72	0.89	4.49	11702	1230	28	72	10	340	0	logfile
✔	6SHT	10205	2021-01-07	2019-08-08	2.73	2.88	2.78	2.8	0.015	1.55	0.0	0.07	17.80	0.01	0.000	10.21	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.005	0.63	0.0	0.04	15.72	0.00	0.000	5.06	0.62	1.7	97.7	0.6	4.76	1.76	0.71	0.83	3.21	37152	4176	24	0	48	1728	0	logfile
✔	6NJo	9390	2021-01-06	2019-01-03	3.34	3.42	—	3.4	0.010	1.21	1.0	0.07	11.62	0.01	1.361	5.91	0.49	7.1	92.9	0.0	-4.27	0.80	0.83	3.46	3.4	0.005	0.77	0.0	0.05	13.22	0.01	0.037	9.93	0.00	5.8	94.2	0.0	-1.51	0.52	0.81	0.82	2.87	19090	2466	14	0	12	20	0	logfile
✔	5V93	8645	2021-01-11	2017-03-22	4.0	4.15	—	4.0	0.010	1.09	3.0	0.05	10.71	0.01	1.951	4.65	0.00	10.1	89.2	0.7	-2.37	0.83	0.74	—	4.0	0.005	0.79	2.0	0.04	12.08	0.01	0.454	24.01	0.02	8.3	91.4	0.3	-1.92	0.54	0.85	0.77	—	143579	5327	52	4752	1	0	0	logfile
✔	5JUU	6647	2021-01-12	2016-05-10	4.0	4.43	—	3.8	0.020	1.28	0.0	0.14	17.36	0.01	2.266	39.56	11.11	19.9	72.8	7.3	-6.38	0.79	0.65	—	3.6	0.004	0.72	1.0	0.04	16.59	0.01	0.736	24.75	0.03	11.4	87.7	0.9	-2.67	1.10	0.85	0.78	—	215045	12374	84	5566	2	0	0	logfile
✔	6NJP	9391	2021-01-06	2019-01-03	3.29	3.37	—	3.3	0.009	1.18	0.0	0.07	11.57	0.01	1.276	6.16	0.67	6.4	93.6	0.0	-4.04	0.81	0.83	3.41	3.3	0.002	0.65	0.0	0.04	12.67	0.00	0.748	8.30	0.00	4.5	95.5	0.0	-0.79	1.18	0.82	0.82	2.67	19607	2530	15	0	12	21	0	logfile
✔	6ZP7	11337	2021-01-06	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.00	0.008	15.90	0.52	3.0	97.0	0.0	-0.93	0.64	0.59	1.49	3.7	0.003	0.67	0.0	0.11	13.30	0.00	0.792	9.93	0.04	3.9	96.1	0.0	0.12	1.74	0.81	0.82	2.21	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2021-01-06	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.00	0.012	14.01	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.007	0.75	0.0	0.11	13.26	0.00	0.796	12.15	0.00	4.5	95.5	0.0	-0.11	0.74	0.83	0.84	2.50	23615	2861	33	0	92	0	0	logfile
✔	6GEJ	4395	2021-01-07	2018-04-26	3.6	3.77	—	3.7	0.002	0.61	0.0	0.04	18.57	0.00	1.491	9.03	3.93	4.6	95.4	0.0	-2.70	0.82	0.77	0.98	3.7	0.004	0.69	0.0	0.04	19.04	0.00	0.835	11.21	0.00	5.4	94.6	0.1	-0.57	1.44	0.84	0.80	1.29	43702	4683	29	308	151	0	0	logfile
✔	6AP1	8887	2021-01-06	2017-08-16	3.2	3.26	—	3.3	0.016	1.66	2.0	0.09	14.24	0.01	1.198	23.89	3.62	10.9	87.0	2.1	-4.53	0.62	0.58	1.49	3.2	0.003	0.74	0.0	0.04	14.00	0.01	0.916	9.34	0.00	6.6	93.3	0.1	0.58	1.52	0.67	0.65	1.30	18838	2404	24	0	14	0	0	logfile
✔	6oo2	20142	2021-01-06	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	6.87	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.5	0.003	0.67	0.0	0.04	12.95	0.00	0.947	12.49	0.00	4.3	95.7	0.0	1.96	1.11	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile
✔	6GEN	4396	2021-01-07	2018-04-27	3.6	4.67	—	4.5	0.003	0.75	0.0	0.04	20.46	0.01	2.109	5.88	8.77	3.9	96.0	0.0	-4.51	0.78	0.59	-0.18	4.5	0.005	0.78	0.0	0.04	19.60	0.00	0.950	20.86	0.03	6.3	93.7	0.0	-0.77	1.97	0.86	0.77	0.38	44481	4683	29	346	151	0	0	logfile
✔	6NDY	0443	2021-01-05	2018-12-14	3.6	3.70	—	3.6	0.004	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.003	0.68	0.0	0.04	14.02	0.00	0.957	10.49	0.07	5.1	94.9	0.0	-0.01	1.42	0.79	0.80	1.41	12531	1596	11	0	20	0	0	logfile
✔	6TUP	10593	2021-01-06	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.3	0.025	1.99	0.0	0.19	25.49	0.01	0.963	94.99	0.00	2.9	97.1	0.0	-3.02	8.44	0.56	0.60	-0.04	22400	2300	100	300	0	0	0	logfile
✔	6TD5	10463	2021-01-07	2019-11-07	3.2	3.25	3.20	3.2	0.006	0.97	0.0	0.05	10.05	0.01	2.109	4.59	0.15	4.4	95.6	0.0	-4.67	0.75	0.83	3.66	3.2	0.003	0.61	0.0	0.04	13.79	0.00	0.970	8.67	0.04	3.6	96.4	0.0	0.02	1.16	0.77	0.84	2.95	49408	6360	34	0	8	0	0	logfile
✔	6U9V	20702	2021-01-06	2019-09-09	2.9	3.06	—	3.1	0.009	0.83	0.0	0.08	14.68	0.00	2.090	2.46	0.57	4.9	95.1	0.0	-1.99	0.64	0.76	3.46	3.1	0.004	0.62	0.0	0.04	13.93	0.00	0.977	7.41	0.14	7.2	92.8	0.0	-0.96	1.68	0.66	0.79	3.57	26701	1680	6	3	51	0	12634	logfile
✔	6YDP	10778	2021-01-15	2020-03-20	3.0	3.11	3.00	3.1	0.002	0.50	0.0	0.03	15.87	0.00	1.147	8.21	1.48	3.7	96.2	0.0	-2.35	0.75	0.78	1.93	3.1	0.006	0.72	0.0	0.04	15.37	0.01	0.980	10.35	0.03	5.3	94.7	0.0	-0.20	0.65	0.77	0.81	2.65	179513	15179	122	2648	339	5	0	logfile

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