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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PUT | 20481 | 2021-01-05 | 2019-07-18 | 2.9 | 3.22 | 2.97 | 3.2 | 0.007 | 0.83 | 0.0 | 0.05 | 19.07 | 0.01 | 0.000 | 5.03 | 0.20 | 2.5 | 97.5 | 0.0 | -3.43 | 0.73 | 0.90 | 4.56 | 3.2 | 0.002 | 0.50 | 0.0 | 0.04 | 17.74 | 0.00 | 0.000 | 7.95 | 0.00 | 2.2 | 97.8 | 0.0 | 1.27 | 0.91 | 0.66 | 0.87 | 4.04 | 10976 | 1170 | 28 | 68 | 8 | 308 | 0 | logfile |
✔ | 6PUY | 20484 | 2021-01-05 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.97 | 0.0 | 0.06 | 19.53 | 0.01 | 0.000 | 4.31 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | 3.1 | 0.003 | 0.61 | 0.0 | 0.04 | 18.46 | 0.00 | 0.000 | 7.32 | 0.00 | 2.8 | 97.2 | 0.0 | 0.66 | 3.97 | 0.66 | 0.87 | 4.08 | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✔ | 6PUW | 20483 | 2021-01-05 | 2019-07-18 | 2.9 | 3.21 | 2.93 | 3.1 | 0.005 | 0.61 | 0.0 | 0.04 | 19.86 | 0.00 | 0.000 | 7.60 | 0.20 | 2.1 | 97.9 | 0.0 | -2.24 | 0.74 | 0.90 | 4.70 | 3.1 | 0.004 | 0.49 | 0.0 | 0.04 | 19.17 | 0.00 | 0.000 | 7.36 | 0.00 | 2.8 | 97.2 | 0.0 | 0.48 | 0.89 | 0.69 | 0.88 | 4.44 | 11116 | 1170 | 28 | 72 | 10 | 312 | 0 | logfile |
✔ | 6PUZ | 20485 | 2021-01-05 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.87 | 0.0 | 0.05 | 19.46 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | 3.0 | 0.005 | 0.53 | 0.0 | 0.04 | 18.81 | 0.00 | 0.000 | 7.52 | 0.00 | 2.2 | 97.8 | 0.0 | 0.76 | 0.40 | 0.72 | 0.89 | 4.49 | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✔ | 6SHT | 10205 | 2021-01-07 | 2019-08-08 | 2.73 | 2.88 | 2.78 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 17.80 | 0.01 | 0.000 | 10.21 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | 2.8 | 0.005 | 0.63 | 0.0 | 0.04 | 15.72 | 0.00 | 0.000 | 5.06 | 0.62 | 1.7 | 97.7 | 0.6 | 4.76 | 1.76 | 0.71 | 0.83 | 3.21 | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✔ | 6NJo | 9390 | 2021-01-06 | 2019-01-03 | 3.34 | 3.42 | — | 3.4 | 0.010 | 1.21 | 1.0 | 0.07 | 11.62 | 0.01 | 1.361 | 5.91 | 0.49 | 7.1 | 92.9 | 0.0 | -4.27 | 0.80 | 0.83 | 3.46 | 3.4 | 0.005 | 0.77 | 0.0 | 0.05 | 13.22 | 0.01 | 0.037 | 9.93 | 0.00 | 5.8 | 94.2 | 0.0 | -1.51 | 0.52 | 0.81 | 0.82 | 2.87 | 19090 | 2466 | 14 | 0 | 12 | 20 | 0 | logfile |
✔ | 5V93 | 8645 | 2021-01-11 | 2017-03-22 | 4.0 | 4.15 | — | 4.0 | 0.010 | 1.09 | 3.0 | 0.05 | 10.71 | 0.01 | 1.951 | 4.65 | 0.00 | 10.1 | 89.2 | 0.7 | -2.37 | 0.83 | 0.74 | — | 4.0 | 0.005 | 0.79 | 2.0 | 0.04 | 12.08 | 0.01 | 0.454 | 24.01 | 0.02 | 8.3 | 91.4 | 0.3 | -1.92 | 0.54 | 0.85 | 0.77 | — | 143579 | 5327 | 52 | 4752 | 1 | 0 | 0 | logfile |
✔ | 5JUU | 6647 | 2021-01-12 | 2016-05-10 | 4.0 | 4.43 | — | 3.8 | 0.020 | 1.28 | 0.0 | 0.14 | 17.36 | 0.01 | 2.266 | 39.56 | 11.11 | 19.9 | 72.8 | 7.3 | -6.38 | 0.79 | 0.65 | — | 3.6 | 0.004 | 0.72 | 1.0 | 0.04 | 16.59 | 0.01 | 0.736 | 24.75 | 0.03 | 11.4 | 87.7 | 0.9 | -2.67 | 1.10 | 0.85 | 0.78 | — | 215045 | 12374 | 84 | 5566 | 2 | 0 | 0 | logfile |
✔ | 6NJP | 9391 | 2021-01-06 | 2019-01-03 | 3.29 | 3.37 | — | 3.3 | 0.009 | 1.18 | 0.0 | 0.07 | 11.57 | 0.01 | 1.276 | 6.16 | 0.67 | 6.4 | 93.6 | 0.0 | -4.04 | 0.81 | 0.83 | 3.41 | 3.3 | 0.002 | 0.65 | 0.0 | 0.04 | 12.67 | 0.00 | 0.748 | 8.30 | 0.00 | 4.5 | 95.5 | 0.0 | -0.79 | 1.18 | 0.82 | 0.82 | 2.67 | 19607 | 2530 | 15 | 0 | 12 | 21 | 0 | logfile |
✔ | 6ZP7 | 11337 | 2021-01-06 | 2020-07-08 | 3.3 | 4.01 | 3.43 | 3.7 | 0.012 | 0.83 | 0.0 | 0.16 | 13.52 | 0.00 | 0.008 | 15.90 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.64 | 0.59 | 1.49 | 3.7 | 0.003 | 0.67 | 0.0 | 0.11 | 13.30 | 0.00 | 0.792 | 9.93 | 0.04 | 3.9 | 96.1 | 0.0 | 0.12 | 1.74 | 0.81 | 0.82 | 2.21 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 6ZP5 | 11336 | 2021-01-06 | 2020-07-08 | 3.1 | 3.90 | 3.32 | 3.6 | 0.012 | 0.83 | 0.0 | 0.15 | 13.52 | 0.00 | 0.012 | 14.01 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.67 | 0.64 | 2.54 | 3.6 | 0.007 | 0.75 | 0.0 | 0.11 | 13.26 | 0.00 | 0.796 | 12.15 | 0.00 | 4.5 | 95.5 | 0.0 | -0.11 | 0.74 | 0.83 | 0.84 | 2.50 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 6GEJ | 4395 | 2021-01-07 | 2018-04-26 | 3.6 | 3.77 | — | 3.7 | 0.002 | 0.61 | 0.0 | 0.04 | 18.57 | 0.00 | 1.491 | 9.03 | 3.93 | 4.6 | 95.4 | 0.0 | -2.70 | 0.82 | 0.77 | 0.98 | 3.7 | 0.004 | 0.69 | 0.0 | 0.04 | 19.04 | 0.00 | 0.835 | 11.21 | 0.00 | 5.4 | 94.6 | 0.1 | -0.57 | 1.44 | 0.84 | 0.80 | 1.29 | 43702 | 4683 | 29 | 308 | 151 | 0 | 0 | logfile |
✔ | 6AP1 | 8887 | 2021-01-06 | 2017-08-16 | 3.2 | 3.26 | — | 3.3 | 0.016 | 1.66 | 2.0 | 0.09 | 14.24 | 0.01 | 1.198 | 23.89 | 3.62 | 10.9 | 87.0 | 2.1 | -4.53 | 0.62 | 0.58 | 1.49 | 3.2 | 0.003 | 0.74 | 0.0 | 0.04 | 14.00 | 0.01 | 0.916 | 9.34 | 0.00 | 6.6 | 93.3 | 0.1 | 0.58 | 1.52 | 0.67 | 0.65 | 1.30 | 18838 | 2404 | 24 | 0 | 14 | 0 | 0 | logfile |
✔ | 6oo2 | 20142 | 2021-01-06 | 2019-04-22 | 4.4 | 4.52 | — | 3.5 | 0.007 | 1.14 | 1.0 | 0.07 | 13.96 | 0.01 | 2.037 | 6.87 | 0.00 | 7.1 | 92.3 | 0.6 | -3.55 | 0.75 | 0.61 | — | 2.5 | 0.003 | 0.67 | 0.0 | 0.04 | 12.95 | 0.00 | 0.947 | 12.49 | 0.00 | 4.3 | 95.7 | 0.0 | 1.96 | 1.11 | 0.86 | 0.80 | — | 16691 | 2436 | 24 | 0 | 19 | 0 | 0 | logfile |
✔ | 6GEN | 4396 | 2021-01-07 | 2018-04-27 | 3.6 | 4.67 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.04 | 20.46 | 0.01 | 2.109 | 5.88 | 8.77 | 3.9 | 96.0 | 0.0 | -4.51 | 0.78 | 0.59 | -0.18 | 4.5 | 0.005 | 0.78 | 0.0 | 0.04 | 19.60 | 0.00 | 0.950 | 20.86 | 0.03 | 6.3 | 93.7 | 0.0 | -0.77 | 1.97 | 0.86 | 0.77 | 0.38 | 44481 | 4683 | 29 | 346 | 151 | 0 | 0 | logfile |
✔ | 6NDY | 0443 | 2021-01-05 | 2018-12-14 | 3.6 | 3.70 | — | 3.6 | 0.004 | 0.89 | 0.0 | 0.05 | 14.71 | 0.01 | 2.037 | 4.67 | 0.00 | 5.9 | 94.1 | 0.0 | -3.78 | 0.66 | 0.54 | 0.23 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 14.02 | 0.00 | 0.957 | 10.49 | 0.07 | 5.1 | 94.9 | 0.0 | -0.01 | 1.42 | 0.79 | 0.80 | 1.41 | 12531 | 1596 | 11 | 0 | 20 | 0 | 0 | logfile |
✔ | 6TUP | 10593 | 2021-01-06 | 2020-01-08 | 3.2 | 3.52 | — | 3.3 | 0.011 | 1.02 | 0.0 | 0.05 | 21.23 | 0.00 | 0.032 | 54.60 | 0.00 | 0.0 | 100.0 | 0.0 | -7.04 | 0.49 | 0.47 | 1.19 | 3.3 | 0.025 | 1.99 | 0.0 | 0.19 | 25.49 | 0.01 | 0.963 | 94.99 | 0.00 | 2.9 | 97.1 | 0.0 | -3.02 | 8.44 | 0.56 | 0.60 | -0.04 | 22400 | 2300 | 100 | 300 | 0 | 0 | 0 | logfile |
✔ | 6TD5 | 10463 | 2021-01-07 | 2019-11-07 | 3.2 | 3.25 | 3.20 | 3.2 | 0.006 | 0.97 | 0.0 | 0.05 | 10.05 | 0.01 | 2.109 | 4.59 | 0.15 | 4.4 | 95.6 | 0.0 | -4.67 | 0.75 | 0.83 | 3.66 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 13.79 | 0.00 | 0.970 | 8.67 | 0.04 | 3.6 | 96.4 | 0.0 | 0.02 | 1.16 | 0.77 | 0.84 | 2.95 | 49408 | 6360 | 34 | 0 | 8 | 0 | 0 | logfile |
✔ | 6U9V | 20702 | 2021-01-06 | 2019-09-09 | 2.9 | 3.06 | — | 3.1 | 0.009 | 0.83 | 0.0 | 0.08 | 14.68 | 0.00 | 2.090 | 2.46 | 0.57 | 4.9 | 95.1 | 0.0 | -1.99 | 0.64 | 0.76 | 3.46 | 3.1 | 0.004 | 0.62 | 0.0 | 0.04 | 13.93 | 0.00 | 0.977 | 7.41 | 0.14 | 7.2 | 92.8 | 0.0 | -0.96 | 1.68 | 0.66 | 0.79 | 3.57 | 26701 | 1680 | 6 | 3 | 51 | 0 | 12634 | logfile |
✔ | 6YDP | 10778 | 2021-01-15 | 2020-03-20 | 3.0 | 3.11 | 3.00 | 3.1 | 0.002 | 0.50 | 0.0 | 0.03 | 15.87 | 0.00 | 1.147 | 8.21 | 1.48 | 3.7 | 96.2 | 0.0 | -2.35 | 0.75 | 0.78 | 1.93 | 3.1 | 0.006 | 0.72 | 0.0 | 0.04 | 15.37 | 0.01 | 0.980 | 10.35 | 0.03 | 5.3 | 94.7 | 0.0 | -0.20 | 0.65 | 0.77 | 0.81 | 2.65 | 179513 | 15179 | 122 | 2648 | 339 | 5 | 0 | logfile |