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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5A9Z | 6396 | 2022-07-10 | 2015-07-23 | 4.7 | 4.83 | — | 4.7 | 0.013 | 1.89 | 26.0 | 0.14 | 23.31 | 0.03 | 0.000 | 199.55 | 29.15 | 25.1 | 49.6 | 25.2 | -7.73 | 0.81 | 0.65 | — | 4.7 | 0.006 | 1.00 | 0.0 | 0.05 | 19.23 | 0.01 | 0.000 | 40.34 | 0.22 | 21.3 | 76.3 | 2.3 | -4.29 | 2.90 | 0.87 | 0.81 | — | 150547 | 6671 | 58 | 4527 | 131 | 0 | 0 | logfile |
✔ | 6SHT | 10205 | 2022-07-07 | 2019-08-08 | 2.73 | 2.88 | 2.78 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 17.80 | 0.01 | 0.000 | 10.21 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 19.60 | 0.00 | 0.000 | 5.46 | 2.24 | 1.4 | 98.3 | 0.3 | 5.07 | 1.76 | 0.72 | 0.84 | 2.18 | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✔ | 6PUT | 20481 | 2022-07-03 | 2019-07-18 | 2.9 | 3.22 | 2.96 | 3.2 | 0.007 | 0.82 | 0.0 | 0.05 | 19.07 | 0.01 | 0.000 | 5.22 | 0.20 | 2.5 | 97.5 | 0.0 | -3.43 | 0.73 | 0.90 | 4.56 | 3.2 | 0.005 | 0.58 | 0.0 | 0.04 | 20.73 | 0.00 | 0.000 | 8.58 | 1.21 | 1.7 | 98.3 | 0.0 | 0.61 | 0.88 | 0.65 | 0.89 | 4.26 | 10976 | 1170 | 28 | 68 | 8 | 308 | 0 | logfile |
✔ | 6NJo | 9390 | 2022-07-04 | 2019-01-03 | 3.34 | 3.42 | — | 3.4 | 0.010 | 1.20 | 1.0 | 0.07 | 11.62 | 0.01 | 1.361 | 5.91 | 0.49 | 7.1 | 92.9 | 0.0 | -4.27 | 0.80 | 0.83 | 3.46 | 3.4 | 0.003 | 0.68 | 0.0 | 0.04 | 14.74 | 0.00 | 0.155 | 8.95 | 0.29 | 4.8 | 95.2 | 0.0 | -0.97 | 0.53 | 0.82 | 0.83 | 2.25 | 19090 | 2466 | 14 | 0 | 12 | 20 | 0 | logfile |
✔ | 6NJP | 9391 | 2022-07-04 | 2019-01-03 | 3.29 | 3.37 | — | 3.3 | 0.009 | 1.17 | 0.0 | 0.07 | 11.57 | 0.01 | 1.276 | 6.18 | 0.67 | 6.4 | 93.6 | 0.0 | -4.04 | 0.81 | 0.83 | 3.41 | 3.3 | 0.003 | 0.70 | 0.0 | 0.05 | 14.73 | 0.00 | 0.613 | 9.44 | 0.48 | 4.8 | 95.2 | 0.0 | -1.19 | 1.15 | 0.83 | 0.85 | 2.70 | 19607 | 2530 | 15 | 0 | 12 | 21 | 0 | logfile |
✔ | 7BSV | 30168 | 2022-07-03 | 2020-03-31 | 3.0 | 3.16 | — | 3.1 | 0.005 | 1.15 | 0.0 | 0.05 | 17.62 | 0.01 | 1.809 | 30.67 | 6.19 | 7.6 | 92.2 | 0.2 | -6.02 | 0.61 | 0.86 | 4.20 | 3.1 | 0.003 | 0.89 | 0.0 | 0.04 | 18.05 | 0.00 | 0.760 | 9.90 | 3.34 | 5.2 | 94.8 | 0.0 | -1.17 | 0.99 | 0.64 | 0.88 | 3.54 | 9339 | 1139 | 6 | 0 | 8 | 4 | 0 | logfile |
✔ | 6AP1 | 8887 | 2022-07-04 | 2017-08-16 | 3.2 | 3.26 | — | 3.3 | 0.016 | 1.66 | 2.0 | 0.09 | 14.24 | 0.01 | 1.198 | 24.29 | 3.62 | 10.9 | 87.0 | 2.1 | -4.53 | 0.62 | 0.58 | 1.49 | 3.2 | 0.010 | 1.07 | 1.0 | 0.04 | 16.75 | 0.01 | 0.785 | 12.30 | 0.15 | 6.5 | 93.2 | 0.3 | -0.35 | 2.36 | 0.68 | 0.66 | 1.23 | 18838 | 2404 | 24 | 0 | 14 | 0 | 0 | logfile |
✔ | 6ZP5 | 11336 | 2022-07-05 | 2020-07-08 | 3.1 | 3.90 | 3.32 | 3.6 | 0.012 | 0.83 | 0.0 | 0.15 | 13.52 | 0.01 | 0.012 | 14.24 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.67 | 0.64 | 2.54 | 3.6 | 0.004 | 0.75 | 0.0 | 0.11 | 14.99 | 0.00 | 0.787 | 10.27 | 0.40 | 3.6 | 96.4 | 0.0 | 0.24 | 0.66 | 0.82 | 0.84 | 2.27 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 6ZP7 | 11337 | 2022-07-05 | 2020-07-08 | 3.3 | 4.01 | 3.43 | 3.7 | 0.012 | 0.83 | 0.0 | 0.16 | 13.52 | 0.01 | 0.008 | 16.13 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.64 | 0.59 | 1.49 | 3.7 | 0.003 | 0.75 | 0.0 | 0.11 | 15.23 | 0.00 | 0.791 | 10.44 | 0.28 | 3.5 | 96.5 | 0.0 | 0.07 | 1.33 | 0.81 | 0.83 | 2.09 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 6J51 | 0676 | 2022-07-08 | 2019-01-10 | 4.2 | 4.46 | — | 3.0 | 0.009 | 1.21 | 3.0 | 0.07 | 18.81 | 0.01 | 1.661 | 7.48 | 0.74 | 4.3 | 95.0 | 0.7 | -1.68 | 0.74 | 0.62 | — | 3.0 | 0.005 | 0.75 | 0.0 | 0.04 | 19.15 | 0.00 | 0.867 | 15.02 | 0.00 | 3.8 | 96.1 | 0.1 | 0.65 | 1.73 | 0.82 | 0.77 | — | 47661 | 5122 | 36 | 337 | 11 | 0 | 0 | logfile |
✔ | 6oo2 | 20142 | 2022-07-04 | 2019-04-22 | 4.4 | 4.52 | — | 3.5 | 0.007 | 1.14 | 1.0 | 0.07 | 13.96 | 0.01 | 2.037 | 7.03 | 0.00 | 7.1 | 92.3 | 0.6 | -3.55 | 0.75 | 0.61 | — | 2.5 | 0.004 | 0.74 | 0.0 | 0.04 | 12.97 | 0.00 | 0.867 | 17.94 | 0.00 | 5.8 | 94.2 | 0.0 | 1.38 | 1.01 | 0.86 | 0.80 | — | 16691 | 2436 | 24 | 0 | 19 | 0 | 0 | logfile |
✔ | 6NDY | 0443 | 2022-07-03 | 2018-12-14 | 3.6 | 3.70 | — | 3.6 | 0.005 | 0.89 | 0.0 | 0.05 | 14.71 | 0.01 | 2.037 | 4.67 | 0.00 | 5.9 | 94.1 | 0.0 | -3.78 | 0.66 | 0.54 | 0.23 | 3.6 | 0.004 | 0.76 | 0.0 | 0.04 | 16.50 | 0.01 | 0.877 | 12.25 | 0.30 | 6.1 | 93.9 | 0.0 | -0.02 | 1.29 | 0.79 | 0.80 | 0.66 | 12531 | 1596 | 11 | 0 | 20 | 0 | 0 | logfile |
✔ | 7NVX | 12616 | 2022-07-05 | 2021-03-16 | 3.9 | 3.92 | 3.77 | 3.8 | 0.003 | 0.49 | 0.0 | 0.04 | 15.65 | 0.00 | 1.971 | 6.69 | 0.00 | 4.5 | 95.5 | 0.0 | 0.85 | 0.70 | 0.64 | 1.31 | 3.8 | 0.009 | 0.99 | 2.0 | 0.04 | 18.09 | 0.01 | 0.878 | 20.76 | 0.32 | 4.5 | 95.4 | 0.0 | -0.54 | 0.89 | 0.71 | 0.66 | 1.15 | 23663 | 2796 | 18 | 50 | 35 | 0 | 0 | logfile |
✔ | 7TDH | 25829 | 2022-07-04 | 2021-12-31 | 4.0 | 4.95 | 4.67 | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.63 | 0.00 | 2.254 | 4.69 | 0.00 | 5.1 | 94.9 | 0.0 | -1.74 | 0.84 | 0.67 | — | 4.5 | 0.030 | 2.64 | 75.0 | 0.11 | 19.60 | 0.02 | 0.880 | 152.93 | 3.43 | 43.5 | 54.9 | 1.6 | -7.27 | 2.44 | 0.88 | 0.83 | — | 117532 | 13060 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 7TDK | 25832 | 2022-07-04 | 2021-12-31 | 3.8 | 4.07 | 3.86 | 3.8 | 0.004 | 0.87 | 0.0 | 0.04 | 15.75 | 0.01 | 2.210 | 5.03 | 0.46 | 5.7 | 94.1 | 0.1 | -0.20 | 0.85 | 0.77 | 1.07 | 3.8 | 0.051 | 3.21 | 82.0 | 0.14 | 20.00 | 0.02 | 0.886 | 99.70 | 3.23 | 38.3 | 59.1 | 2.6 | -7.46 | 2.33 | 0.89 | 0.86 | 1.21 | 117136 | 12936 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 6GEJ | 4395 | 2022-07-07 | 2018-04-26 | 3.6 | 3.77 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 18.57 | 0.00 | 1.491 | 9.16 | 3.93 | 4.6 | 95.4 | 0.0 | -2.70 | 0.82 | 0.77 | 0.98 | 3.7 | 0.005 | 0.84 | 0.0 | 0.04 | 20.68 | 0.01 | 0.891 | 11.32 | 0.40 | 4.8 | 95.2 | 0.0 | -0.31 | 0.84 | 0.84 | 0.80 | 1.01 | 43702 | 4683 | 29 | 308 | 151 | 0 | 0 | logfile |
✔ | 7QWS | 14193 | 2022-07-06 | 2022-01-25 | 3.4 | 3.09 | — | 7.2 | 0.002 | 0.46 | 0.0 | 0.03 | 14.64 | 0.00 | 2.011 | 9.49 | 1.65 | 3.7 | 96.3 | 0.0 | 0.47 | 0.23 | 0.02 | -0.02 | 3.0 | 0.008 | 1.22 | 3.0 | 0.06 | 19.93 | 0.01 | 0.959 | 37.21 | 0.73 | 12.5 | 87.4 | 0.1 | -3.55 | 1.98 | 0.49 | 0.54 | 0.44 | 137913 | 7047 | 55 | 3769 | 126 | 0 | 0 | logfile |
✔ | 6FTJ | 4317 | 2022-07-10 | 2018-02-22 | 4.7 | 4.88 | — | 4.7 | 0.011 | 1.39 | 18.0 | 0.10 | 19.94 | 0.01 | 0.475 | 12.17 | 11.77 | 9.8 | 87.8 | 2.4 | -4.05 | 0.63 | 0.62 | — | 4.7 | 0.006 | 0.96 | 0.0 | 0.05 | 18.77 | 0.01 | 0.965 | 41.39 | 0.04 | 10.9 | 88.6 | 0.5 | -2.42 | 1.17 | 0.67 | 0.71 | — | 152111 | 8263 | 73 | 3938 | 461 | 0 | 0 | logfile |
✔ | 6T59 | 10380 | 2022-07-07 | 2019-10-15 | 3.11 | 3.19 | 3.02 | 7.3 | 0.011 | 0.83 | 0.0 | 0.05 | 17.10 | 0.00 | 1.148 | 10.88 | 0.76 | 8.9 | 91.0 | 0.1 | -5.04 | 0.22 | 0.01 | 0.07 | 3.1 | 0.006 | 1.03 | 4.0 | 0.05 | 19.37 | 0.01 | 0.984 | 28.80 | 0.63 | 9.2 | 90.7 | 0.1 | -2.66 | 1.99 | 0.57 | 0.55 | 0.42 | 143047 | 7383 | 64 | 3890 | 225 | 0 | 0 | logfile |
✔ | 5GAD | 8000 | 2022-07-06 | 2015-11-24 | 3.7 | 4.17 | — | 3.9 | 0.009 | 1.11 | 1.0 | 0.05 | 15.93 | 0.01 | 1.737 | 9.28 | 10.34 | 3.5 | 96.5 | 0.1 | -3.19 | 0.77 | 0.79 | 1.52 | 3.9 | 0.007 | 0.67 | 0.0 | 0.03 | 15.21 | 0.01 | 0.987 | 18.22 | 0.58 | 3.8 | 96.1 | 0.1 | -0.19 | 1.60 | 0.81 | 0.88 | 1.37 | 98006 | 4087 | 49 | 3049 | 507 | 0 | 0 | logfile |