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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PUW | 20483 | 2023-02-20 | 2019-07-18 | 2.9 | 3.21 | 2.93 | 3.1 | 0.013 | 0.77 | 0.0 | 0.04 | 19.85 | 0.00 | 0.000 | 7.69 | 0.20 | 2.1 | 97.9 | 0.0 | -2.24 | 0.74 | 0.90 | 4.70 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 21.73 | 0.00 | 0.000 | 9.02 | 2.15 | 3.4 | 96.6 | 0.0 | 0.49 | 0.38 | 0.69 | 0.90 | 4.23 | 11116 | 1170 | 28 | 72 | 10 | 312 | 0 | logfile |
✔ | 6PUT | 20481 | 2023-02-19 | 2019-07-18 | 2.9 | 3.22 | 2.96 | 3.2 | 0.007 | 0.82 | 0.0 | 0.05 | 19.07 | 0.01 | 0.000 | 5.13 | 0.20 | 2.5 | 97.5 | 0.0 | -3.43 | 0.73 | 0.90 | 4.56 | 3.2 | 0.006 | 0.59 | 0.0 | 0.05 | 20.77 | 0.00 | 0.000 | 8.24 | 1.11 | 1.9 | 98.1 | 0.0 | 0.58 | 0.88 | 0.63 | 0.88 | 4.31 | 10976 | 1170 | 28 | 68 | 8 | 308 | 0 | logfile |
✔ | 6NJo | 9390 | 2023-02-23 | 2019-01-03 | 3.34 | 3.42 | — | 3.4 | 0.010 | 1.20 | 1.0 | 0.07 | 11.62 | 0.01 | 1.361 | 5.89 | 0.49 | 7.1 | 92.9 | 0.0 | -4.27 | 0.80 | 0.83 | 3.46 | 3.4 | 0.006 | 0.80 | 0.0 | 0.05 | 14.93 | 0.00 | 0.071 | 10.22 | 0.54 | 6.4 | 93.6 | 0.0 | -1.44 | 0.52 | 0.83 | 0.85 | 2.54 | 19090 | 2466 | 14 | 0 | 12 | 20 | 0 | logfile |
✔ | 6M1D | 30041 | 2023-02-24 | 2020-02-25 | 4.5 | 6.53 | — | 4.6 | 0.005 | 1.20 | 0.0 | 0.06 | 18.16 | 0.01 | 2.043 | 20.63 | 9.51 | 9.3 | 89.8 | 0.9 | -5.09 | 0.69 | 0.76 | — | 4.6 | 0.005 | 1.04 | 0.0 | 0.05 | 14.90 | 0.01 | 0.441 | 31.91 | 0.00 | 11.3 | 88.3 | 0.4 | -4.03 | 0.67 | 0.68 | 0.70 | — | 21776 | 2706 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NJP | 9391 | 2023-02-23 | 2019-01-03 | 3.29 | 3.37 | — | 3.3 | 0.009 | 1.17 | 0.0 | 0.07 | 11.57 | 0.01 | 1.276 | 6.11 | 0.67 | 6.4 | 93.6 | 0.0 | -4.04 | 0.81 | 0.83 | 3.41 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 14.63 | 0.00 | 0.782 | 8.81 | 0.33 | 4.0 | 96.0 | 0.0 | -0.93 | 1.16 | 0.82 | 0.85 | 2.58 | 19607 | 2530 | 15 | 0 | 12 | 21 | 0 | logfile |
✔ | 6ZP5 | 11336 | 2023-02-24 | 2020-07-08 | 3.1 | 3.90 | 3.32 | 3.6 | 0.012 | 0.83 | 0.0 | 0.15 | 13.52 | 0.01 | 0.012 | 14.22 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.67 | 0.64 | 2.54 | 3.6 | 0.003 | 0.73 | 0.0 | 0.11 | 15.06 | 0.00 | 0.789 | 9.67 | 0.28 | 3.5 | 96.5 | 0.0 | 0.24 | 0.67 | 0.82 | 0.84 | 2.09 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 6ZP7 | 11337 | 2023-02-24 | 2020-07-08 | 3.3 | 4.01 | 3.43 | 3.7 | 0.012 | 0.83 | 0.0 | 0.16 | 13.52 | 0.01 | 0.008 | 16.12 | 0.52 | 3.0 | 97.0 | 0.0 | -0.92 | 0.64 | 0.59 | 1.49 | 3.7 | 0.004 | 0.76 | 0.0 | 0.11 | 15.26 | 0.00 | 0.792 | 11.28 | 0.36 | 4.2 | 95.8 | 0.0 | 0.03 | 1.34 | 0.82 | 0.84 | 2.13 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 7BSV | 30168 | 2023-02-19 | 2020-03-31 | 3.0 | 3.16 | — | 3.1 | 0.005 | 1.15 | 0.0 | 0.05 | 17.62 | 0.01 | 1.809 | 30.62 | 6.19 | 7.6 | 92.2 | 0.2 | -6.02 | 0.61 | 0.86 | 4.20 | 3.1 | 0.003 | 0.89 | 0.0 | 0.04 | 17.95 | 0.00 | 0.841 | 9.58 | 3.15 | 5.9 | 94.1 | 0.0 | -1.17 | 1.00 | 0.63 | 0.88 | 3.63 | 9339 | 1139 | 6 | 0 | 8 | 4 | 0 | logfile |
✔ | 7NYX | 12657 | 2023-02-27 | 2021-03-23 | 4.6 | 7.95 | 4.57 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 17.28 | 0.00 | 1.844 | 11.21 | 0.00 | 3.4 | 96.6 | 0.0 | 1.74 | 0.88 | 0.79 | — | 3.2 | 0.004 | 0.59 | 0.0 | 0.04 | 17.03 | 0.00 | 0.850 | 17.45 | 0.00 | 5.3 | 94.7 | 0.0 | 0.67 | 0.56 | 0.90 | 0.83 | — | 70784 | 4186 | 18 | 104 | 6 | 0 | 34688 | logfile |
✔ | 6AP1 | 8887 | 2023-02-22 | 2017-08-16 | 3.2 | 3.26 | — | 3.3 | 0.016 | 1.66 | 2.0 | 0.09 | 14.24 | 0.01 | 1.198 | 24.32 | 3.62 | 10.9 | 87.0 | 2.1 | -4.53 | 0.62 | 0.58 | 1.49 | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 16.52 | 0.00 | 0.868 | 9.81 | 0.10 | 5.6 | 94.1 | 0.3 | 0.79 | 2.40 | 0.67 | 0.64 | 1.36 | 18838 | 2404 | 24 | 0 | 14 | 0 | 0 | logfile |
✔ | 6oo2 | 20142 | 2023-02-22 | 2019-04-22 | 4.4 | 4.52 | — | 3.5 | 0.007 | 1.14 | 1.0 | 0.07 | 13.96 | 0.01 | 2.037 | 7.03 | 0.00 | 7.1 | 92.3 | 0.6 | -3.55 | 0.75 | 0.61 | — | 2.4 | 0.003 | 0.70 | 0.0 | 0.04 | 13.05 | 0.00 | 0.883 | 14.96 | 0.07 | 4.7 | 95.3 | 0.0 | 1.49 | 1.05 | 0.86 | 0.80 | — | 16691 | 2436 | 24 | 0 | 19 | 0 | 0 | logfile |
✔ | 6NDY | 0443 | 2023-02-20 | 2018-12-14 | 3.6 | 3.70 | — | 3.6 | 0.005 | 0.89 | 0.0 | 0.05 | 14.71 | 0.01 | 2.037 | 4.67 | 0.00 | 5.9 | 94.1 | 0.0 | -3.78 | 0.66 | 0.54 | 0.23 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 16.31 | 0.00 | 0.894 | 11.65 | 0.52 | 5.9 | 94.1 | 0.0 | -0.22 | 1.30 | 0.79 | 0.80 | 0.84 | 12531 | 1596 | 11 | 0 | 20 | 0 | 0 | logfile |
✔ | 7NVX | 12616 | 2023-02-24 | 2021-03-16 | 3.9 | 3.92 | 3.77 | 3.8 | 0.003 | 0.49 | 0.0 | 0.04 | 15.65 | 0.00 | 1.971 | 6.61 | 0.00 | 4.5 | 95.5 | 0.0 | 0.85 | 0.70 | 0.64 | 1.31 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 18.10 | 0.00 | 0.904 | 15.82 | 0.32 | 5.1 | 94.8 | 0.0 | -0.66 | 0.93 | 0.72 | 0.67 | 1.17 | 23663 | 2796 | 18 | 50 | 35 | 0 | 0 | logfile |
✔ | 7PT7 | 13620 | 2023-02-26 | 2021-09-26 | 3.8 | 3.34 | — | 3.4 | 0.007 | 0.74 | 4.0 | 0.05 | 14.97 | 0.00 | 1.865 | 11.56 | 0.64 | 3.3 | 96.7 | 0.0 | 0.56 | 0.76 | 0.80 | 1.56 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 15.85 | 0.00 | 0.924 | 10.95 | 0.25 | 3.0 | 97.0 | 0.0 | 0.73 | 0.31 | 0.77 | 0.82 | 1.43 | 67420 | 8451 | 29 | 0 | 50 | 0 | 0 | logfile |
✔ | 7T76 | 25735 | 2023-02-22 | 2021-12-14 | 4.43 | 4.68 | 4.39 | 4.5 | 0.021 | 1.95 | 2.0 | 0.14 | 10.42 | 0.02 | 0.530 | 1.29 | 0.77 | 3.4 | 96.4 | 0.3 | 0.31 | 0.81 | 0.80 | — | 4.5 | 0.003 | 0.68 | 0.0 | 0.05 | 12.25 | 0.00 | 0.951 | 12.48 | 0.00 | 5.0 | 94.9 | 0.1 | -0.57 | 1.89 | 0.81 | 0.81 | — | 16587 | 1934 | 42 | 0 | 104 | 0 | 0 | logfile |
✔ | 7Qo1 | 14080 | 2023-02-21 | 2021-12-23 | 4.4 | 3.65 | 4.44 | 3.5 | 0.012 | 1.85 | 2.0 | 0.09 | 18.30 | 0.02 | 2.337 | 2.24 | 1.51 | 5.3 | 94.6 | 0.2 | -1.82 | 0.79 | 0.60 | — | 3.5 | 0.003 | 0.75 | 0.0 | 0.04 | 17.66 | 0.00 | 0.966 | 16.68 | 0.00 | 5.3 | 94.7 | 0.0 | -1.30 | 0.73 | 0.80 | 0.60 | — | 14179 | 1694 | 9 | 62 | 1 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2023-02-21 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 20.86 | 0.01 | 0.865 | 18.49 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.005 | 0.76 | 0.0 | 0.04 | 16.78 | 0.01 | 0.968 | 35.61 | 0.00 | 9.3 | 90.2 | 0.5 | -1.75 | 2.17 | 0.87 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 8H77 | 34519 | 2023-02-21 | 2022-10-19 | 3.2 | 2.74 | 3.17 | 3.1 | 0.005 | 0.84 | 0.0 | 0.05 | 15.36 | 0.00 | 1.365 | 13.57 | 0.12 | 5.1 | 94.9 | 0.0 | -1.57 | 0.59 | 0.67 | 2.51 | 3.1 | 0.004 | 0.66 | 0.0 | 0.04 | 17.53 | 0.00 | 0.978 | 10.13 | 0.29 | 4.2 | 95.8 | 0.0 | -0.93 | 0.69 | 0.69 | 0.77 | 2.13 | 15726 | 1930 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7UiM | 26549 | 2023-02-21 | 2022-03-29 | 3.1 | 4.12 | 3.81 | 3.6 | 0.005 | 0.87 | 0.0 | 0.04 | 18.46 | 0.01 | 1.903 | 9.02 | 0.00 | 3.7 | 96.3 | 0.0 | -1.28 | 0.67 | 0.47 | 0.98 | 3.6 | 0.006 | 0.82 | 0.0 | 0.04 | 19.55 | 0.01 | 0.997 | 36.04 | 1.47 | 6.3 | 93.4 | 0.3 | -0.97 | 2.81 | 0.79 | 0.76 | 0.73 | 14772 | 387 | 3 | 541 | 15 | 0 | 0 | logfile |
✔ | 6TZ1 | 20586 | 2023-02-21 | 2019-08-09 | 3.4 | 3.44 | — | 3.4 | 0.008 | 0.92 | 0.0 | 0.05 | 10.16 | 0.01 | 2.207 | 4.35 | 0.47 | 5.1 | 94.9 | 0.0 | -3.92 | 0.54 | 0.85 | 3.95 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 14.53 | 0.00 | 1.013 | 6.52 | 0.47 | 3.8 | 96.2 | 0.0 | -0.27 | 1.25 | 0.53 | 0.87 | 3.17 | 14212 | 1709 | 5 | 23 | 1 | 0 | 0 | logfile |