Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RE3	4840	2021-12-01	2019-04-12	3.3	3.43	3.47	3.4	0.012	1.02	0.0	0.06	14.02	0.01	1.994	5.93	0.43	4.9	94.9	0.2	-3.96	0.69	0.80	2.37	3.4	0.006	0.77	0.0	0.04	15.80	0.00	1.505	13.01	0.25	4.0	95.9	0.1	-0.20	1.22	0.71	0.85	1.86	53720	7099	37	0	11	0	0	logfile
✔	7AJQ	11806	2021-12-01	2020-09-29	4.0	3.67	4.30	4.2	0.002	0.55	0.0	0.03	13.10	0.00	2.208	12.84	0.00	3.5	96.5	0.0	-0.98	0.76	0.76	—	4.2	0.007	1.24	0.0	0.05	15.93	0.01	1.522	27.45	0.54	4.0	95.9	0.1	0.96	0.85	0.77	0.77	—	9210	1222	7	0	0	0	0	logfile
✔	7oDS	12846	2021-12-01	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.15	0.02	2.009	5.01	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.006	0.77	0.0	0.04	14.79	0.01	1.527	11.50	0.28	3.0	97.0	0.0	0.37	1.69	0.79	0.79	2.22	108339	9371	67	1487	132	0	0	logfile
✔	7LRS	23498	2021-12-01	2021-02-17	3.89	4.36	3.88	4.1	0.003	0.64	0.0	0.04	13.26	0.00	2.181	9.02	0.19	10.7	88.7	0.6	-2.85	0.87	0.79	2.13	4.1	0.008	1.31	0.0	0.05	15.80	0.00	1.535	18.03	0.37	12.2	87.0	0.8	-2.92	0.51	0.89	0.83	1.83	4912	625	5	0	8	0	0	logfile
✔	6SUF	10313	2021-12-01	2019-09-13	3.4	3.32	—	3.3	0.021	1.77	6.0	0.10	10.78	0.01	2.186	1.71	0.00	2.4	97.3	0.3	-0.46	0.80	0.80	2.93	3.3	0.007	0.84	4.0	0.04	14.93	0.00	1.536	13.42	0.14	4.0	96.0	0.0	0.36	1.31	0.81	0.81	2.72	108112	13607	6	0	0	0	0	logfile
✔	6SUE	10312	2021-12-01	2019-09-13	3.4	3.48	3.43	3.3	0.021	1.72	5.0	0.10	10.89	0.01	2.214	1.21	0.01	2.1	97.7	0.3	0.31	0.86	0.81	2.68	3.3	0.004	0.70	0.0	0.04	14.67	0.00	1.542	13.23	0.16	3.7	96.3	0.1	0.64	1.38	0.87	0.84	2.37	108270	13628	6	0	0	0	0	logfile
✔	6i1X	0326	2021-12-01	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.007	0.96	1.0	0.05	16.51	0.01	1.578	20.67	0.26	5.3	94.3	0.4	-1.42	1.04	0.65	0.60	0.73	54915	7290	15	0	0	0	0	logfile
✔	5X8R	6710	2021-12-01	2017-03-03	3.7	3.88	—	3.8	0.012	1.32	8.0	0.06	14.80	0.01	1.255	12.13	1.03	12.1	86.8	1.1	-4.16	0.77	0.74	1.22	3.7	0.008	0.90	0.0	0.04	16.23	0.01	1.588	25.60	0.35	12.7	86.8	0.4	-2.34	1.31	0.81	0.84	1.07	55412	2969	26	1480	0	0	0	logfile
✔	6RDR	4828	2021-12-01	2019-04-12	4.1	4.19	4.13	4.1	0.007	0.94	0.0	0.05	14.97	0.01	1.908	6.99	0.44	5.2	94.6	0.2	-4.22	0.67	0.74	—	4.1	0.006	0.82	2.0	0.04	14.05	0.00	1.591	15.26	0.02	4.7	95.2	0.1	-0.49	1.28	0.69	0.78	—	53748	7103	37	0	11	0	0	logfile
✔	7LQE	23483	2021-12-01	2021-02-13	3.4	3.06	—	3.4	0.008	0.86	0.0	0.05	20.97	0.00	1.410	23.12	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.149	5.54	281.0	0.38	25.48	0.02	1.592	131.83	6.94	59.7	38.5	1.7	-8.82	1.67	0.66	0.89	2.30	6120	576	72	0	0	0	0	logfile
✔	6VRL	21370	2021-12-01	2020-02-07	3.8	3.98	4.22	3.9	0.002	0.55	0.0	0.04	14.02	0.00	2.159	10.57	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	3.9	0.008	1.15	0.0	0.04	16.23	0.00	1.595	25.65	0.62	6.5	93.5	0.0	-1.12	0.74	0.50	0.70	1.36	6141	764	4	0	4	0	0	logfile
✔	7BZ2	30249	2021-12-01	2020-04-26	3.82	3.99	—	3.9	0.005	0.66	0.0	0.05	14.76	0.00	2.101	12.28	0.00	10.2	89.8	0.0	-6.04	0.73	0.79	2.10	3.9	0.016	1.60	2.0	0.05	16.98	0.00	1.601	12.63	0.41	4.9	94.9	0.1	-3.01	1.58	0.72	0.78	1.15	7393	978	5	0	1	0	0	logfile
✔	6SKK	10226	2021-12-02	2019-08-15	3.6	3.76	3.63	3.7	0.003	0.60	0.0	0.04	12.96	0.00	2.319	7.60	0.18	1.7	98.3	0.0	-1.14	0.70	0.75	1.70	3.7	0.014	1.15	0.0	0.04	17.00	0.01	1.614	15.82	0.36	2.8	97.2	0.0	0.92	0.70	0.71	0.77	1.53	10328	1320	6	0	0	0	0	logfile
✔	7oZP	13131	2021-12-01	2021-06-28	3.8	4.17	3.83	4.0	0.002	0.39	0.0	0.04	14.04	0.00	1.969	4.71	0.00	2.1	97.9	0.0	1.24	0.79	0.71	0.86	4.0	0.008	0.95	2.0	0.05	16.68	0.01	1.622	20.31	0.28	3.3	96.7	0.0	0.26	0.93	0.83	0.78	1.20	54330	6774	32	0	10	0	0	logfile
✔	6RDW	4833	2021-12-01	2019-04-12	3.8	3.78	—	3.8	0.010	1.05	0.0	0.06	15.03	0.01	2.050	6.71	0.55	5.8	94.0	0.2	-4.32	0.66	0.83	1.85	3.8	0.004	0.71	0.0	0.04	16.50	0.00	1.627	13.53	0.21	4.3	95.6	0.1	-0.40	0.56	0.66	0.83	1.23	53748	7103	37	0	11	0	0	logfile
✔	5LL6	4071	2021-12-01	2016-07-26	3.9	4.01	—	3.9	0.012	1.50	6.0	0.11	19.06	0.01	0.924	5.03	2.53	10.6	85.7	3.7	-3.86	0.69	0.82	1.20	3.9	0.005	0.82	0.0	0.04	18.75	0.01	1.640	19.02	0.42	10.9	88.1	1.0	-2.59	0.80	0.69	0.80	0.89	55262	3429	20	1325	5	0	0	logfile
✔	7LQF	23484	2021-12-01	2021-02-13	3.8	3.13	—	4.0	0.007	0.93	0.0	0.05	19.18	0.00	1.403	22.67	2.08	0.0	100.0	0.0	-4.77	0.60	0.78	4.63	3.2	0.152	6.73	277.0	0.41	26.00	0.03	1.649	212.94	6.25	66.0	28.9	5.1	-9.55	2.07	0.69	0.86	2.63	5440	512	64	0	0	0	0	logfile
✔	6RDU	4831	2021-12-01	2019-04-12	3.5	3.59	3.51	3.5	0.011	1.02	1.0	0.06	15.14	0.01	2.058	6.06	0.60	5.7	94.0	0.3	-4.05	0.64	0.75	1.85	3.5	0.007	0.83	1.0	0.04	16.66	0.01	1.673	12.53	0.09	4.3	95.6	0.1	-0.08	0.70	0.65	0.79	1.29	53748	7103	37	0	11	0	0	logfile
✔	6DZZ	8943	2021-12-01	2018-07-05	3.6	4.03	4.12	4.1	0.007	0.94	0.0	0.08	9.32	0.01	1.715	4.01	0.16	6.0	94.0	0.0	-5.28	0.42	0.68	1.52	4.1	0.015	1.56	1.0	0.04	15.15	0.01	1.679	17.59	0.47	5.9	94.1	0.0	-1.67	2.75	0.47	0.73	2.12	6141	768	4	0	4	0	0	logfile
✔	6VRA	21365	2021-12-01	2020-02-07	3.3	3.58	—	3.4	0.008	1.03	4.0	0.06	15.67	0.01	2.214	6.31	0.80	8.5	91.5	0.0	-3.93	0.84	0.85	2.53	3.4	0.009	1.02	4.0	0.04	16.26	0.00	1.684	11.80	0.00	5.6	94.4	0.0	-1.33	0.45	0.83	0.86	2.23	57744	7208	20	0	16	0	0	logfile

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