Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GYW	34378	2023-09-28	2022-09-24	3.9	3.93	3.77	4.0	0.008	1.46	0.0	0.08	15.18	0.02	2.008	6.48	0.30	0.8	99.2	0.0	1.24	0.46	0.73	1.92	3.9	0.003	0.67	0.0	0.04	16.46	0.00	1.170	13.03	1.21	1.7	98.3	0.0	2.64	1.27	0.50	0.76	0.83	6076	760	4	0	6	0	0	logfile
✔	7N0C	24103	2023-09-28	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	13.78	0.01	2.180	6.79	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.002	0.57	0.0	0.04	14.64	0.00	1.187	9.74	0.18	4.9	95.1	0.0	-1.13	0.49	0.72	0.81	1.59	6088	644	6	49	7	1	0	logfile
✔	7oH5	12894	2023-09-30	2021-05-09	2.9	3.43	2.96	3.3	0.006	1.14	0.0	0.04	10.55	0.00	1.656	5.05	1.19	4.6	95.4	0.0	-4.15	0.65	0.75	3.22	3.4	0.003	0.83	0.0	0.04	14.74	0.00	1.236	7.59	1.75	4.0	95.9	0.1	-0.60	2.18	0.68	0.78	2.52	11603	1419	8	0	14	2	0	logfile
✔	5MMJ	3532	2023-09-28	2016-12-10	3.6	3.88	—	3.6	0.008	1.15	0.0	0.05	16.66	0.01	1.774	10.61	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.006	0.73	0.0	0.04	16.62	0.01	1.240	20.90	0.79	6.1	93.8	0.1	-0.78	2.11	0.92	0.86	1.06	55315	2806	31	1484	359	0	0	logfile
✔	6K32	9907	2023-09-30	2019-05-16	3.2	3.73	—	3.8	0.009	1.22	1.0	0.07	11.49	0.01	1.345	10.22	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.004	0.78	0.0	0.05	16.38	0.00	1.254	13.10	0.77	5.7	94.2	0.0	-1.38	1.36	0.31	0.82	2.33	61364	7723	10	8	6	0	0	logfile
✔	6TA3	10421	2023-09-29	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.72	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.89	0.0	0.05	17.88	0.01	1.271	29.54	0.58	3.7	96.3	0.0	-0.37	2.45	0.78	0.74	0.54	9491	1201	6	0	5	0	0	logfile
✔	6Yo0	10862	2023-09-28	2020-04-14	2.9	3.37	2.94	3.1	0.009	0.75	0.0	0.04	9.57	0.00	1.889	11.21	0.27	3.7	96.3	0.0	-0.60	0.84	0.87	3.83	3.1	0.004	0.57	0.0	0.04	13.62	0.00	1.300	8.27	0.64	4.4	95.6	0.0	1.08	0.80	0.84	0.89	3.23	55780	3598	17	0	10	0	28102	logfile
✔	6LLY	0915	2023-09-28	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.60	0.0	0.04	12.24	0.00	2.043	6.20	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.002	0.56	0.0	0.04	15.35	0.00	1.313	7.93	1.51	3.0	97.0	0.0	0.10	0.49	0.64	0.80	1.86	7774	1006	1	0	2	0	0	logfile
✔	6JT2	9885	2023-09-28	2019-04-08	3.8	3.88	—	3.8	0.004	0.74	0.0	0.04	11.14	0.01	1.980	10.08	3.54	4.0	95.7	0.3	-2.54	0.80	0.80	2.23	3.8	0.003	0.69	0.0	0.04	13.57	0.00	1.319	10.96	0.12	3.7	96.3	0.0	-0.17	1.66	0.82	0.81	1.64	8191	1075	4	0	4	0	0	logfile
✔	6W98	21580	2023-09-30	2020-03-22	2.9	3.47	2.92	3.3	0.010	0.86	0.0	0.05	12.85	0.01	1.990	2.62	0.00	4.4	95.6	0.1	-4.30	0.67	0.84	3.77	3.3	0.003	0.65	0.0	0.04	14.49	0.00	1.327	7.85	1.81	3.9	96.1	0.0	-0.06	0.49	0.67	0.85	3.05	10317	1389	3	0	4	1	0	logfile
✔	6LN9	0928	2023-09-28	2019-12-28	3.4	3.61	3.06	3.6	0.003	0.54	0.0	0.04	12.32	0.00	2.075	7.70	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.003	0.60	0.0	0.04	14.72	0.00	1.333	10.18	0.00	4.3	95.7	0.0	-0.24	0.52	0.62	0.75	1.21	7612	987	1	0	2	0	0	logfile
✔	7SLQ	25198	2023-09-28	2021-10-24	3.7	3.95	—	3.9	0.011	1.16	1.0	0.06	14.97	0.01	2.144	6.53	1.35	3.7	96.3	0.0	-2.83	0.74	0.70	2.35	3.9	0.002	0.57	0.0	0.04	15.85	0.01	1.369	9.36	0.22	4.8	95.2	0.0	0.01	1.31	0.74	0.72	1.83	5451	559	4	50	1	0	0	logfile
✔	6LN8	0927	2023-09-28	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.003	0.54	0.0	0.04	15.08	0.00	1.381	9.56	0.12	3.1	96.9	0.0	0.11	0.48	0.69	0.82	1.70	7739	1003	1	0	2	0	0	logfile
✔	7oP8	13014	2023-09-29	2021-05-31	3.5	3.85	—	3.8	0.004	0.86	0.0	0.05	14.44	0.01	1.950	6.41	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	3.8	0.003	0.63	0.0	0.04	16.12	0.00	1.389	10.40	0.21	6.2	93.8	0.0	-0.75	1.73	0.66	0.78	0.83	8872	1118	1	0	2	0	0	logfile
✔	7NV0	12601	2023-09-30	2021-03-15	3.4	2.96	—	2.9	0.011	1.13	0.0	0.06	19.63	0.01	2.205	8.09	1.30	8.1	91.9	0.0	-4.56	0.60	0.68	2.36	2.9	0.003	0.69	0.0	0.04	20.62	0.00	1.431	12.52	0.54	2.8	97.2	0.0	-1.13	0.70	0.58	0.69	1.76	9928	1180	7	53	1	0	0	logfile
✔	8GYX	34379	2023-09-28	2022-09-24	3.7	3.91	3.72	3.9	0.007	1.36	0.0	0.07	15.99	0.01	2.208	6.07	0.30	0.8	99.2	0.0	1.06	0.50	0.76	2.38	3.9	0.004	0.67	0.0	0.04	15.90	0.00	1.447	11.17	0.60	2.1	97.9	0.0	2.78	1.28	0.53	0.79	2.23	6118	760	4	0	6	0	0	logfile
✔	8D96	27256	2023-09-29	2022-06-09	3.35	4.21	3.32	3.9	0.002	0.58	0.0	0.04	17.10	0.00	1.836	7.87	0.11	2.5	97.3	0.2	2.00	0.89	0.85	1.96	3.9	0.002	0.47	0.0	0.04	17.22	0.00	1.455	5.78	0.32	2.6	97.2	0.2	2.16	0.41	0.90	0.88	1.84	9203	1056	6	30	4	0	0	logfile
✔	7To1	26026	2023-09-28	2022-01-22	3.66	3.88	—	3.9	0.012	1.05	0.0	0.06	13.19	0.00	2.314	6.92	0.00	8.3	91.7	0.0	-2.28	0.73	0.81	1.82	3.9	0.003	0.66	0.0	0.04	15.32	0.00	1.464	9.92	0.00	6.7	93.3	0.0	-0.05	1.20	0.71	0.78	2.56	5601	635	3	21	2	0	0	logfile
✔	7YGA	33813	2023-09-29	2022-07-11	2.35	3.08	2.44	2.8	0.008	0.62	0.0	0.04	15.23	0.01	1.779	10.87	0.00	0.0	0.0	0.0	—	0.89	0.87	—	2.8	0.007	0.60	0.0	0.04	15.26	0.00	1.499	12.63	0.00	0.0	0.0	0.0	—	0.17	0.89	0.88	—	8692	0	3	407	8	0	0	logfile
✔	7UTD	26767	2023-09-28	2022-04-26	2.19	3.00	2.25	2.5	0.060	2.36	28.0	1.00	15.03	0.02	1.964	8.43	1.36	2.2	97.7	0.1	-0.03	0.71	0.61	3.58	2.6	0.005	1.93	0.0	0.08	15.64	0.00	1.523	16.31	1.27	2.9	97.1	0.0	0.37	1.33	0.88	0.85	3.78	54200	6908	36	0	64	0	0	logfile

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