Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5o5J	3748	2022-12-22	2017-06-02	3.45	3.51	—	3.4	0.008	1.20	0.0	0.05	17.48	0.01	1.740	9.43	11.65	5.4	94.5	0.1	-3.62	0.65	0.87	1.42	3.4	0.004	0.64	0.0	0.04	16.50	0.00	1.014	12.74	0.85	4.4	95.4	0.1	0.27	0.68	0.64	0.85	1.54	52163	2406	28	1536	219	0	0	logfile
✔	7UiM	26549	2022-12-13	2022-03-29	3.1	4.12	3.81	3.6	0.005	0.87	0.0	0.04	18.46	0.01	1.903	9.06	0.00	3.7	96.3	0.0	-1.28	0.67	0.47	0.98	3.6	0.005	0.75	0.0	0.04	19.49	0.00	1.021	31.13	0.29	6.3	93.4	0.3	-1.03	2.98	0.79	0.76	0.71	14772	387	3	541	15	0	0	logfile
✔	6oAB	20000	2022-12-14	2019-03-15	3.6	3.87	3.73	3.8	0.006	1.07	1.0	0.05	16.24	0.01	1.245	9.41	0.34	7.7	92.1	0.2	-5.58	0.68	0.68	0.81	3.7	0.003	0.86	0.0	0.05	17.26	0.00	1.030	14.06	0.39	8.2	91.8	0.0	-1.76	2.17	0.73	0.79	1.33	19690	2537	11	0	18	0	0	logfile
✔	6ZXF	11519	2022-12-15	2020-07-29	3.7	3.68	3.69	3.5	0.010	0.98	0.0	0.05	16.80	0.01	1.937	8.55	0.65	8.5	91.5	0.0	-3.70	0.87	0.81	1.63	3.4	0.004	0.65	0.0	0.04	16.91	0.00	1.039	14.84	0.59	5.6	94.4	0.0	-1.07	0.57	0.87	0.82	1.39	80133	5758	41	1656	6	0	0	logfile
✔	6FYY	4328	2022-12-19	2018-03-12	3.02	3.15	3.09	3.1	0.008	1.34	57.0	0.11	20.67	0.02	0.817	7.50	10.74	8.2	89.1	2.7	-1.95	0.63	0.83	1.68	3.1	0.005	0.78	0.0	0.04	19.30	0.01	1.048	15.42	0.86	7.1	92.2	0.7	-0.33	1.43	0.66	0.84	1.61	104316	8066	54	1886	200	0	0	logfile
✔	8EW3	28641	2022-12-12	2022-10-21	2.65159	3.20	2.63	3.0	0.003	0.45	0.0	0.04	10.09	0.00	2.260	3.12	0.16	1.7	98.3	0.0	1.12	0.78	0.90	4.36	3.0	0.004	0.57	0.0	0.04	13.47	0.00	1.068	6.12	0.96	2.4	97.6	0.0	1.33	1.18	0.75	0.90	3.48	11902	1540	9	0	5	0	0	logfile
✔	7S0S	24792	2022-12-17	2021-08-31	3.05	3.10	—	3.1	0.008	0.83	0.0	0.05	16.21	0.01	1.722	9.88	1.24	6.2	93.8	0.0	-1.73	0.58	0.66	0.70	3.1	0.006	0.70	0.0	0.04	16.36	0.01	1.071	9.57	0.61	5.8	94.2	0.0	-1.41	0.97	0.70	0.85	2.56	100057	3946	46	3236	407	0	0	logfile
✔	7o5H	12736	2022-12-19	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	12.30	0.00	1.262	5.95	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.67	0.0	0.04	14.61	0.01	1.074	13.60	0.42	3.8	96.2	0.0	0.27	1.48	0.87	0.85	1.30	34436	1730	22	964	167	0	0	logfile
✔	8E5L	27914	2022-12-14	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.68	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.004	0.78	0.0	0.04	12.09	0.00	1.079	28.99	0.00	3.5	96.5	0.0	0.34	1.26	0.89	0.84	—	20058	2502	13	9	18	0	0	logfile
✔	5GAF	8002	2022-12-17	2015-11-25	4.3	4.42	—	4.3	0.007	1.09	1.0	0.05	15.95	0.01	1.266	8.96	11.04	3.5	96.4	0.1	-3.28	0.63	0.64	—	4.3	0.004	0.65	0.0	0.03	14.91	0.00	1.080	19.19	0.00	4.6	95.3	0.1	-0.98	1.99	0.71	0.84	—	96182	3889	47	3049	452	0	0	logfile
✔	6PEK	20327	2022-12-12	2019-06-20	4.2	4.25	—	4.2	0.005	0.73	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.75	0.0	0.04	14.95	0.00	1.080	14.73	0.00	2.7	97.3	0.0	-0.40	1.46	0.72	0.77	—	11106	1405	11	0	13	0	0	logfile
✔	3J9S	6272	2022-12-13	2015-02-19	2.6	3.84	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.104	287.40	6.86	1.3	98.0	0.8	1.95	0.60	0.63	2.26	3.6	0.032	2.66	41.0	0.17	20.84	0.02	1.083	172.48	7.64	19.4	79.1	1.5	-3.76	4.12	0.56	0.66	1.10	13084	1588	4	0	20	420	0	logfile
✔	6ZoJ	11320	2022-12-15	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	14.31	0.00	1.694	4.49	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.005	0.63	0.0	0.04	15.90	0.00	1.086	5.53	2.45	3.3	96.7	0.0	0.69	2.45	0.82	0.88	3.30	75783	4914	45	1704	169	0	0	logfile
✔	7S6C	24868	2022-12-13	2021-09-13	3.1	3.69	—	3.3	0.005	0.74	0.0	0.04	13.96	0.00	2.068	4.32	0.00	4.0	96.0	0.0	-0.30	0.82	0.76	2.85	3.3	0.003	0.51	0.0	0.04	14.76	0.00	1.086	9.01	0.04	3.9	96.1	0.0	0.13	0.34	0.84	0.80	2.88	47369	3190	10	0	2	0	23420	logfile
✔	7BoE	12240	2022-12-22	2021-01-25	2.9	3.08	2.98	2.9	0.008	0.78	3.0	0.05	14.41	0.02	1.885	6.98	0.66	2.3	97.7	0.0	-1.12	0.77	0.78	2.22	2.9	0.006	0.73	0.0	0.04	15.76	0.01	1.088	15.01	2.73	3.6	96.4	0.0	-0.23	0.75	0.83	0.89	2.15	51969	2400	23	1534	153	0	0	logfile
✔	7NVN	12607	2022-12-14	2021-03-15	3.0	3.12	2.93	3.1	0.004	0.62	0.0	0.04	14.51	0.00	1.909	8.81	1.66	3.2	96.7	0.1	-2.07	0.64	0.77	2.98	3.1	0.003	0.64	0.0	0.04	16.96	0.00	1.097	10.23	2.65	3.3	96.7	0.0	0.70	1.19	0.74	0.85	2.89	69139	8970	51	0	48	19	0	logfile
✔	6TUP	10593	2022-12-14	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.4	0.039	2.56	0.0	0.24	27.07	0.01	1.098	116.88	1.25	3.2	96.8	0.0	-2.76	8.49	0.54	0.59	-0.09	22400	2300	100	300	0	0	0	logfile
✔	5LMo	4074	2022-12-11	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.52	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.004	0.71	0.0	0.04	16.56	0.01	1.105	28.92	0.00	7.7	91.8	0.5	-1.66	2.16	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	8EVU	28637	2022-12-12	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.09	0.00	2.279	2.75	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.004	0.54	0.0	0.04	13.46	0.00	1.105	4.75	0.56	2.4	97.6	0.0	1.43	0.42	0.76	0.91	3.98	11902	1540	9	0	5	0	0	logfile
✔	7ZC6	14622	2022-12-12	2022-03-25	4.27	4.35	4.17	4.3	0.014	1.95	12.0	2.55	19.20	0.01	2.098	17.92	10.79	6.1	93.1	0.8	-1.59	0.66	0.74	—	4.3	0.020	3.90	0.0	0.76	14.82	0.00	1.111	18.21	0.00	3.8	96.2	0.0	-0.94	0.74	0.68	0.78	—	11428	1513	11	0	12	0	0	logfile

• ← previous
• Page 2 of 443
• next →