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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8GYW | 34378 | 2023-09-28 | 2022-09-24 | 3.9 | 3.93 | 3.77 | 4.0 | 0.008 | 1.46 | 0.0 | 0.08 | 15.18 | 0.02 | 2.008 | 6.48 | 0.30 | 0.8 | 99.2 | 0.0 | 1.24 | 0.46 | 0.73 | 1.92 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 16.46 | 0.00 | 1.170 | 13.03 | 1.21 | 1.7 | 98.3 | 0.0 | 2.64 | 1.27 | 0.50 | 0.76 | 0.83 | 6076 | 760 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7N0C | 24103 | 2023-09-28 | 2021-05-25 | 3.4 | 3.71 | — | 3.7 | 0.009 | 1.00 | 0.0 | 0.05 | 13.78 | 0.01 | 2.180 | 6.79 | 0.00 | 1.3 | 98.7 | 0.0 | -3.80 | 0.72 | 0.80 | 2.48 | 3.7 | 0.002 | 0.57 | 0.0 | 0.04 | 14.64 | 0.00 | 1.187 | 9.74 | 0.18 | 4.9 | 95.1 | 0.0 | -1.13 | 0.49 | 0.72 | 0.81 | 1.59 | 6088 | 644 | 6 | 49 | 7 | 1 | 0 | logfile |
✔ | 7oH5 | 12894 | 2023-09-30 | 2021-05-09 | 2.9 | 3.43 | 2.96 | 3.3 | 0.006 | 1.14 | 0.0 | 0.04 | 10.55 | 0.00 | 1.656 | 5.05 | 1.19 | 4.6 | 95.4 | 0.0 | -4.15 | 0.65 | 0.75 | 3.22 | 3.4 | 0.003 | 0.83 | 0.0 | 0.04 | 14.74 | 0.00 | 1.236 | 7.59 | 1.75 | 4.0 | 95.9 | 0.1 | -0.60 | 2.18 | 0.68 | 0.78 | 2.52 | 11603 | 1419 | 8 | 0 | 14 | 2 | 0 | logfile |
✔ | 5MMJ | 3532 | 2023-09-28 | 2016-12-10 | 3.6 | 3.88 | — | 3.6 | 0.008 | 1.15 | 0.0 | 0.05 | 16.66 | 0.01 | 1.774 | 10.61 | 7.28 | 4.9 | 94.8 | 0.3 | -3.46 | 0.92 | 0.86 | 1.28 | 3.6 | 0.006 | 0.73 | 0.0 | 0.04 | 16.62 | 0.01 | 1.240 | 20.90 | 0.79 | 6.1 | 93.8 | 0.1 | -0.78 | 2.11 | 0.92 | 0.86 | 1.06 | 55315 | 2806 | 31 | 1484 | 359 | 0 | 0 | logfile |
✔ | 6K32 | 9907 | 2023-09-30 | 2019-05-16 | 3.2 | 3.73 | — | 3.8 | 0.009 | 1.22 | 1.0 | 0.07 | 11.49 | 0.01 | 1.345 | 10.22 | 1.25 | 6.3 | 93.3 | 0.3 | -4.88 | 0.28 | 0.72 | 1.49 | 3.7 | 0.004 | 0.78 | 0.0 | 0.05 | 16.38 | 0.00 | 1.254 | 13.10 | 0.77 | 5.7 | 94.2 | 0.0 | -1.38 | 1.36 | 0.31 | 0.82 | 2.33 | 61364 | 7723 | 10 | 8 | 6 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2023-09-29 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.76 | 0.01 | 0.317 | 210.72 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.004 | 0.89 | 0.0 | 0.05 | 17.88 | 0.01 | 1.271 | 29.54 | 0.58 | 3.7 | 96.3 | 0.0 | -0.37 | 2.45 | 0.78 | 0.74 | 0.54 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 6Yo0 | 10862 | 2023-09-28 | 2020-04-14 | 2.9 | 3.37 | 2.94 | 3.1 | 0.009 | 0.75 | 0.0 | 0.04 | 9.57 | 0.00 | 1.889 | 11.21 | 0.27 | 3.7 | 96.3 | 0.0 | -0.60 | 0.84 | 0.87 | 3.83 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 13.62 | 0.00 | 1.300 | 8.27 | 0.64 | 4.4 | 95.6 | 0.0 | 1.08 | 0.80 | 0.84 | 0.89 | 3.23 | 55780 | 3598 | 17 | 0 | 10 | 0 | 28102 | logfile |
✔ | 6LLY | 0915 | 2023-09-28 | 2019-12-24 | 2.8 | 2.92 | 2.72 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 12.24 | 0.00 | 2.043 | 6.20 | 0.12 | 3.1 | 96.9 | 0.0 | -4.03 | 0.66 | 0.79 | 2.62 | 2.9 | 0.002 | 0.56 | 0.0 | 0.04 | 15.35 | 0.00 | 1.313 | 7.93 | 1.51 | 3.0 | 97.0 | 0.0 | 0.10 | 0.49 | 0.64 | 0.80 | 1.86 | 7774 | 1006 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6JT2 | 9885 | 2023-09-28 | 2019-04-08 | 3.8 | 3.88 | — | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 11.14 | 0.01 | 1.980 | 10.08 | 3.54 | 4.0 | 95.7 | 0.3 | -2.54 | 0.80 | 0.80 | 2.23 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 13.57 | 0.00 | 1.319 | 10.96 | 0.12 | 3.7 | 96.3 | 0.0 | -0.17 | 1.66 | 0.82 | 0.81 | 1.64 | 8191 | 1075 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6W98 | 21580 | 2023-09-30 | 2020-03-22 | 2.9 | 3.47 | 2.92 | 3.3 | 0.010 | 0.86 | 0.0 | 0.05 | 12.85 | 0.01 | 1.990 | 2.62 | 0.00 | 4.4 | 95.6 | 0.1 | -4.30 | 0.67 | 0.84 | 3.77 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 14.49 | 0.00 | 1.327 | 7.85 | 1.81 | 3.9 | 96.1 | 0.0 | -0.06 | 0.49 | 0.67 | 0.85 | 3.05 | 10317 | 1389 | 3 | 0 | 4 | 1 | 0 | logfile |
✔ | 6LN9 | 0928 | 2023-09-28 | 2019-12-28 | 3.4 | 3.61 | 3.06 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 12.32 | 0.00 | 2.075 | 7.70 | 0.00 | 4.1 | 95.9 | 0.0 | -3.36 | 0.63 | 0.73 | 1.41 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.72 | 0.00 | 1.333 | 10.18 | 0.00 | 4.3 | 95.7 | 0.0 | -0.24 | 0.52 | 0.62 | 0.75 | 1.21 | 7612 | 987 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7SLQ | 25198 | 2023-09-28 | 2021-10-24 | 3.7 | 3.95 | — | 3.9 | 0.011 | 1.16 | 1.0 | 0.06 | 14.97 | 0.01 | 2.144 | 6.53 | 1.35 | 3.7 | 96.3 | 0.0 | -2.83 | 0.74 | 0.70 | 2.35 | 3.9 | 0.002 | 0.57 | 0.0 | 0.04 | 15.85 | 0.01 | 1.369 | 9.36 | 0.22 | 4.8 | 95.2 | 0.0 | 0.01 | 1.31 | 0.74 | 0.72 | 1.83 | 5451 | 559 | 4 | 50 | 1 | 0 | 0 | logfile |
✔ | 6LN8 | 0927 | 2023-09-28 | 2019-12-28 | 3.1 | 3.26 | 3.33 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 12.81 | 0.00 | 2.051 | 6.74 | 0.00 | 3.0 | 97.0 | 0.0 | -2.71 | 0.70 | 0.80 | 2.37 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 15.08 | 0.00 | 1.381 | 9.56 | 0.12 | 3.1 | 96.9 | 0.0 | 0.11 | 0.48 | 0.69 | 0.82 | 1.70 | 7739 | 1003 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7oP8 | 13014 | 2023-09-29 | 2021-05-31 | 3.5 | 3.85 | — | 3.8 | 0.004 | 0.86 | 0.0 | 0.05 | 14.44 | 0.01 | 1.950 | 6.41 | 0.00 | 5.6 | 94.4 | 0.0 | -1.73 | 0.66 | 0.77 | 1.18 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.12 | 0.00 | 1.389 | 10.40 | 0.21 | 6.2 | 93.8 | 0.0 | -0.75 | 1.73 | 0.66 | 0.78 | 0.83 | 8872 | 1118 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7NV0 | 12601 | 2023-09-30 | 2021-03-15 | 3.4 | 2.96 | — | 2.9 | 0.011 | 1.13 | 0.0 | 0.06 | 19.63 | 0.01 | 2.205 | 8.09 | 1.30 | 8.1 | 91.9 | 0.0 | -4.56 | 0.60 | 0.68 | 2.36 | 2.9 | 0.003 | 0.69 | 0.0 | 0.04 | 20.62 | 0.00 | 1.431 | 12.52 | 0.54 | 2.8 | 97.2 | 0.0 | -1.13 | 0.70 | 0.58 | 0.69 | 1.76 | 9928 | 1180 | 7 | 53 | 1 | 0 | 0 | logfile |
✔ | 8GYX | 34379 | 2023-09-28 | 2022-09-24 | 3.7 | 3.91 | 3.72 | 3.9 | 0.007 | 1.36 | 0.0 | 0.07 | 15.99 | 0.01 | 2.208 | 6.07 | 0.30 | 0.8 | 99.2 | 0.0 | 1.06 | 0.50 | 0.76 | 2.38 | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 15.90 | 0.00 | 1.447 | 11.17 | 0.60 | 2.1 | 97.9 | 0.0 | 2.78 | 1.28 | 0.53 | 0.79 | 2.23 | 6118 | 760 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8D96 | 27256 | 2023-09-29 | 2022-06-09 | 3.35 | 4.21 | 3.32 | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 17.10 | 0.00 | 1.836 | 7.87 | 0.11 | 2.5 | 97.3 | 0.2 | 2.00 | 0.89 | 0.85 | 1.96 | 3.9 | 0.002 | 0.47 | 0.0 | 0.04 | 17.22 | 0.00 | 1.455 | 5.78 | 0.32 | 2.6 | 97.2 | 0.2 | 2.16 | 0.41 | 0.90 | 0.88 | 1.84 | 9203 | 1056 | 6 | 30 | 4 | 0 | 0 | logfile |
✔ | 7To1 | 26026 | 2023-09-28 | 2022-01-22 | 3.66 | 3.88 | — | 3.9 | 0.012 | 1.05 | 0.0 | 0.06 | 13.19 | 0.00 | 2.314 | 6.92 | 0.00 | 8.3 | 91.7 | 0.0 | -2.28 | 0.73 | 0.81 | 1.82 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 15.32 | 0.00 | 1.464 | 9.92 | 0.00 | 6.7 | 93.3 | 0.0 | -0.05 | 1.20 | 0.71 | 0.78 | 2.56 | 5601 | 635 | 3 | 21 | 2 | 0 | 0 | logfile |
✔ | 7YGA | 33813 | 2023-09-29 | 2022-07-11 | 2.35 | 3.08 | 2.44 | 2.8 | 0.008 | 0.62 | 0.0 | 0.04 | 15.23 | 0.01 | 1.779 | 10.87 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.89 | 0.87 | — | 2.8 | 0.007 | 0.60 | 0.0 | 0.04 | 15.26 | 0.00 | 1.499 | 12.63 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.17 | 0.89 | 0.88 | — | 8692 | 0 | 3 | 407 | 8 | 0 | 0 | logfile |
✔ | 7UTD | 26767 | 2023-09-28 | 2022-04-26 | 2.19 | 3.00 | 2.25 | 2.5 | 0.060 | 2.36 | 28.0 | 1.00 | 15.03 | 0.02 | 1.964 | 8.43 | 1.36 | 2.2 | 97.7 | 0.1 | -0.03 | 0.71 | 0.61 | 3.58 | 2.6 | 0.005 | 1.93 | 0.0 | 0.08 | 15.64 | 0.00 | 1.523 | 16.31 | 1.27 | 2.9 | 97.1 | 0.0 | 0.37 | 1.33 | 0.88 | 0.85 | 3.78 | 54200 | 6908 | 36 | 0 | 64 | 0 | 0 | logfile |