Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LMo	4074	2023-04-20	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.49	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.76	0.0	0.04	16.78	0.01	0.968	35.61	0.00	9.3	90.2	0.5	-1.75	2.17	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	8H77	34519	2023-04-23	2022-10-19	3.2	2.74	3.17	3.1	0.005	0.84	0.0	0.05	15.36	0.00	1.365	13.60	0.12	5.1	94.9	0.0	-1.57	0.59	0.67	2.51	3.1	0.004	0.66	0.0	0.04	17.53	0.00	0.978	10.16	0.29	4.2	95.8	0.0	-0.93	0.69	0.69	0.77	2.13	15726	1930	8	0	4	0	0	logfile
✔	7UiM	26549	2023-04-23	2022-03-29	3.1	4.12	3.81	3.6	0.005	0.87	0.0	0.04	18.46	0.01	1.903	9.02	0.00	3.7	96.3	0.0	-1.28	0.67	0.47	0.98	3.6	0.006	0.82	0.0	0.04	19.55	0.01	0.997	36.04	1.47	6.3	93.4	0.3	-0.97	2.81	0.79	0.76	0.73	14772	387	3	541	15	0	0	logfile
✔	6TZ1	20586	2023-04-23	2019-08-09	3.4	3.44	—	3.4	0.008	0.92	0.0	0.05	10.16	0.01	2.207	4.35	0.47	5.1	94.9	0.0	-3.92	0.54	0.85	3.95	3.4	0.003	0.59	0.0	0.04	14.53	0.00	1.013	6.52	0.47	3.8	96.2	0.0	-0.27	1.25	0.53	0.87	3.17	14212	1709	5	23	1	0	0	logfile
✔	5T62	8362	2023-04-27	2016-09-01	3.3	3.38	—	3.4	0.007	1.13	5.0	0.09	17.39	0.01	1.390	1.88	6.32	8.1	89.7	2.2	-4.03	0.68	0.78	3.21	3.3	0.005	0.70	0.0	0.04	16.51	0.01	1.018	5.75	0.60	6.9	92.4	0.6	-1.76	0.71	0.81	0.88	2.51	131766	7061	57	3483	438	6	0	logfile
✔	8E5L	27914	2023-04-25	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.68	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.002	0.65	0.0	0.04	12.02	0.00	1.046	16.48	0.00	2.4	97.6	0.0	0.49	1.33	0.89	0.83	—	20058	2502	13	9	18	0	0	logfile
✔	6VQT	21356	2023-04-21	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.32	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.1	0.003	0.74	0.0	0.04	16.60	0.00	1.052	9.77	0.32	3.0	97.0	0.0	2.30	1.06	0.77	0.84	1.48	9144	1168	4	0	6	0	0	logfile
✔	7T76	25735	2023-04-24	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	10.62	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.003	0.70	0.0	0.05	12.69	0.00	1.066	11.99	0.00	5.1	94.9	0.0	-0.35	1.89	0.81	0.81	—	16587	1934	42	0	104	0	0	logfile
✔	8EW3	28641	2023-04-22	2022-10-21	2.65159	3.20	2.63	3.0	0.003	0.45	0.0	0.04	10.09	0.00	2.260	2.58	0.16	1.7	98.3	0.0	1.12	0.78	0.90	4.36	3.0	0.003	0.57	0.0	0.04	13.31	0.00	1.077	6.08	0.56	1.8	98.2	0.0	1.38	1.18	0.75	0.89	3.39	11902	1540	9	0	5	0	0	logfile
✔	7TQD	26066	2023-04-20	2022-01-26	2.9	3.57	2.94	3.4	0.003	0.52	0.0	0.04	11.72	0.00	1.960	3.21	0.00	2.0	98.0	0.0	0.95	0.80	0.82	3.99	3.4	0.003	0.57	0.0	0.04	14.86	0.00	1.081	4.43	1.21	1.8	98.2	0.0	0.97	2.47	0.81	0.83	3.66	8690	1096	3	0	5	0	0	logfile
✔	7ZC6	14622	2023-04-22	2022-03-25	4.27	4.35	4.17	4.3	0.014	1.95	12.0	2.55	19.20	0.01	2.098	12.11	10.79	6.1	93.1	0.8	-1.59	0.66	0.74	—	4.3	0.020	3.91	0.0	0.76	14.97	0.00	1.087	12.35	0.00	4.2	95.8	0.0	-0.82	0.73	0.68	0.77	—	11428	1513	11	0	12	0	0	logfile
✔	7To3	26028	2023-04-23	2022-01-22	2.74	3.49	2.83	3.3	0.002	0.54	0.0	0.04	11.67	0.00	2.062	3.20	0.00	1.9	98.1	0.0	0.85	0.83	0.85	3.77	3.3	0.003	0.60	0.0	0.04	13.99	0.00	1.099	4.47	1.10	1.9	98.1	0.0	0.83	1.34	0.82	0.85	4.02	14764	1850	6	0	10	0	0	logfile
✔	7T23	25610	2023-04-26	2021-12-02	4.2	4.50	—	4.2	0.004	1.43	0.0	0.04	9.48	0.00	1.991	5.08	1.51	2.3	97.5	0.2	1.97	0.82	0.73	—	4.2	0.003	1.07	0.0	0.04	11.88	0.00	1.100	17.03	0.04	3.0	96.8	0.2	0.47	0.96	0.83	0.77	—	23507	2954	14	13	15	0	0	logfile
✔	7QGU	13959	2023-04-28	2021-12-10	4.75	7.20	—	5.6	0.010	1.50	1.0	0.04	15.78	0.02	1.064	11.45	0.26	6.6	91.0	2.3	-1.82	0.70	0.57	—	5.5	0.009	1.09	0.0	0.05	20.48	0.01	1.102	77.49	0.00	10.9	88.3	0.8	-1.78	2.90	0.82	0.84	—	135606	5791	54	4656	0	0	0	logfile
✔	5o9G	3765	2023-04-25	2017-06-19	4.8	5.07	4.71	10.4	0.003	0.48	0.0	0.03	22.47	0.00	2.194	7.39	0.36	9.1	90.8	0.1	-4.25	0.51	0.13	—	4.8	0.004	0.80	0.0	0.04	24.58	0.01	1.106	18.06	0.00	4.4	95.5	0.1	-1.54	2.61	0.86	0.77	—	19681	1610	11	324	2	0	0	logfile
✔	7RPW	24624	2023-04-21	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.19	0.00	1.756	18.05	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.003	0.66	0.0	0.04	18.63	0.00	1.110	15.84	0.00	7.5	92.4	0.1	-3.06	3.75	0.77	0.67	—	10594	1179	10	62	5	0	0	logfile
✔	6KPJ	0748	2023-04-22	2019-08-15	2.56	3.82	—	3.3	0.014	0.94	0.0	0.06	12.22	0.00	1.218	8.38	0.00	6.7	93.3	0.0	-4.33	0.85	0.86	3.83	3.3	0.005	0.73	1.0	0.13	14.32	0.00	1.110	6.83	0.50	3.1	96.9	0.0	0.92	0.69	0.85	0.87	3.62	62845	3936	24	0	48	0	31225	logfile
✔	8EVU	28637	2023-04-22	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.09	0.00	2.279	2.29	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.006	0.58	0.0	0.04	13.31	0.00	1.114	4.50	0.88	2.5	97.5	0.0	1.40	0.42	0.76	0.91	3.89	11902	1540	9	0	5	0	0	logfile
✔	7NSH	12567	2023-04-22	2021-03-07	3.2	3.39	3.12	3.3	0.003	0.53	0.0	0.05	15.69	0.00	1.187	7.76	0.02	4.2	95.8	0.1	0.71	0.80	0.84	2.70	3.3	0.002	0.55	0.0	0.04	16.92	0.00	1.115	8.46	0.33	4.0	96.0	0.0	0.81	0.52	0.79	0.89	2.50	112448	9643	79	1611	229	2	0	logfile
✔	7N0C	24103	2023-04-20	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	13.78	0.01	2.180	6.79	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.003	0.63	0.0	0.04	14.78	0.00	1.116	12.44	0.36	5.0	95.0	0.0	-1.35	0.48	0.72	0.80	1.96	6088	644	6	49	7	1	0	logfile

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