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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5LMo | 4074 | 2023-04-20 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 20.86 | 0.01 | 0.865 | 18.49 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.005 | 0.76 | 0.0 | 0.04 | 16.78 | 0.01 | 0.968 | 35.61 | 0.00 | 9.3 | 90.2 | 0.5 | -1.75 | 2.17 | 0.87 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 8H77 | 34519 | 2023-04-23 | 2022-10-19 | 3.2 | 2.74 | 3.17 | 3.1 | 0.005 | 0.84 | 0.0 | 0.05 | 15.36 | 0.00 | 1.365 | 13.60 | 0.12 | 5.1 | 94.9 | 0.0 | -1.57 | 0.59 | 0.67 | 2.51 | 3.1 | 0.004 | 0.66 | 0.0 | 0.04 | 17.53 | 0.00 | 0.978 | 10.16 | 0.29 | 4.2 | 95.8 | 0.0 | -0.93 | 0.69 | 0.69 | 0.77 | 2.13 | 15726 | 1930 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7UiM | 26549 | 2023-04-23 | 2022-03-29 | 3.1 | 4.12 | 3.81 | 3.6 | 0.005 | 0.87 | 0.0 | 0.04 | 18.46 | 0.01 | 1.903 | 9.02 | 0.00 | 3.7 | 96.3 | 0.0 | -1.28 | 0.67 | 0.47 | 0.98 | 3.6 | 0.006 | 0.82 | 0.0 | 0.04 | 19.55 | 0.01 | 0.997 | 36.04 | 1.47 | 6.3 | 93.4 | 0.3 | -0.97 | 2.81 | 0.79 | 0.76 | 0.73 | 14772 | 387 | 3 | 541 | 15 | 0 | 0 | logfile |
✔ | 6TZ1 | 20586 | 2023-04-23 | 2019-08-09 | 3.4 | 3.44 | — | 3.4 | 0.008 | 0.92 | 0.0 | 0.05 | 10.16 | 0.01 | 2.207 | 4.35 | 0.47 | 5.1 | 94.9 | 0.0 | -3.92 | 0.54 | 0.85 | 3.95 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 14.53 | 0.00 | 1.013 | 6.52 | 0.47 | 3.8 | 96.2 | 0.0 | -0.27 | 1.25 | 0.53 | 0.87 | 3.17 | 14212 | 1709 | 5 | 23 | 1 | 0 | 0 | logfile |
✔ | 5T62 | 8362 | 2023-04-27 | 2016-09-01 | 3.3 | 3.38 | — | 3.4 | 0.007 | 1.13 | 5.0 | 0.09 | 17.39 | 0.01 | 1.390 | 1.88 | 6.32 | 8.1 | 89.7 | 2.2 | -4.03 | 0.68 | 0.78 | 3.21 | 3.3 | 0.005 | 0.70 | 0.0 | 0.04 | 16.51 | 0.01 | 1.018 | 5.75 | 0.60 | 6.9 | 92.4 | 0.6 | -1.76 | 0.71 | 0.81 | 0.88 | 2.51 | 131766 | 7061 | 57 | 3483 | 438 | 6 | 0 | logfile |
✔ | 8E5L | 27914 | 2023-04-25 | 2022-08-22 | 4.2 | 8.91 | 5.82 | 7.6 | 0.003 | 0.64 | 0.0 | 0.04 | 11.68 | 0.00 | 1.299 | 26.62 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.63 | 0.37 | — | 7.5 | 0.002 | 0.65 | 0.0 | 0.04 | 12.02 | 0.00 | 1.046 | 16.48 | 0.00 | 2.4 | 97.6 | 0.0 | 0.49 | 1.33 | 0.89 | 0.83 | — | 20058 | 2502 | 13 | 9 | 18 | 0 | 0 | logfile |
✔ | 6VQT | 21356 | 2023-04-21 | 2020-02-05 | 3.03 | 4.54 | 3.09 | 4.1 | 0.009 | 1.15 | 0.0 | 0.06 | 16.32 | 0.01 | 1.733 | 10.32 | 4.94 | 2.7 | 97.3 | 0.0 | 1.39 | 0.78 | 0.80 | 1.43 | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 16.60 | 0.00 | 1.052 | 9.77 | 0.32 | 3.0 | 97.0 | 0.0 | 2.30 | 1.06 | 0.77 | 0.84 | 1.48 | 9144 | 1168 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7T76 | 25735 | 2023-04-24 | 2021-12-14 | 4.43 | 4.68 | 4.39 | 4.5 | 0.022 | 1.97 | 2.0 | 0.14 | 10.62 | 0.02 | 0.530 | 1.29 | 0.77 | 3.4 | 96.4 | 0.3 | 0.31 | 0.81 | 0.80 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.05 | 12.69 | 0.00 | 1.066 | 11.99 | 0.00 | 5.1 | 94.9 | 0.0 | -0.35 | 1.89 | 0.81 | 0.81 | — | 16587 | 1934 | 42 | 0 | 104 | 0 | 0 | logfile |
✔ | 8EW3 | 28641 | 2023-04-22 | 2022-10-21 | 2.65159 | 3.20 | 2.63 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 10.09 | 0.00 | 2.260 | 2.58 | 0.16 | 1.7 | 98.3 | 0.0 | 1.12 | 0.78 | 0.90 | 4.36 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 13.31 | 0.00 | 1.077 | 6.08 | 0.56 | 1.8 | 98.2 | 0.0 | 1.38 | 1.18 | 0.75 | 0.89 | 3.39 | 11902 | 1540 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 7TQD | 26066 | 2023-04-20 | 2022-01-26 | 2.9 | 3.57 | 2.94 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 11.72 | 0.00 | 1.960 | 3.21 | 0.00 | 2.0 | 98.0 | 0.0 | 0.95 | 0.80 | 0.82 | 3.99 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 14.86 | 0.00 | 1.081 | 4.43 | 1.21 | 1.8 | 98.2 | 0.0 | 0.97 | 2.47 | 0.81 | 0.83 | 3.66 | 8690 | 1096 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 7ZC6 | 14622 | 2023-04-22 | 2022-03-25 | 4.27 | 4.35 | 4.17 | 4.3 | 0.014 | 1.95 | 12.0 | 2.55 | 19.20 | 0.01 | 2.098 | 12.11 | 10.79 | 6.1 | 93.1 | 0.8 | -1.59 | 0.66 | 0.74 | — | 4.3 | 0.020 | 3.91 | 0.0 | 0.76 | 14.97 | 0.00 | 1.087 | 12.35 | 0.00 | 4.2 | 95.8 | 0.0 | -0.82 | 0.73 | 0.68 | 0.77 | — | 11428 | 1513 | 11 | 0 | 12 | 0 | 0 | logfile |
✔ | 7To3 | 26028 | 2023-04-23 | 2022-01-22 | 2.74 | 3.49 | 2.83 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 11.67 | 0.00 | 2.062 | 3.20 | 0.00 | 1.9 | 98.1 | 0.0 | 0.85 | 0.83 | 0.85 | 3.77 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 13.99 | 0.00 | 1.099 | 4.47 | 1.10 | 1.9 | 98.1 | 0.0 | 0.83 | 1.34 | 0.82 | 0.85 | 4.02 | 14764 | 1850 | 6 | 0 | 10 | 0 | 0 | logfile |
✔ | 7T23 | 25610 | 2023-04-26 | 2021-12-02 | 4.2 | 4.50 | — | 4.2 | 0.004 | 1.43 | 0.0 | 0.04 | 9.48 | 0.00 | 1.991 | 5.08 | 1.51 | 2.3 | 97.5 | 0.2 | 1.97 | 0.82 | 0.73 | — | 4.2 | 0.003 | 1.07 | 0.0 | 0.04 | 11.88 | 0.00 | 1.100 | 17.03 | 0.04 | 3.0 | 96.8 | 0.2 | 0.47 | 0.96 | 0.83 | 0.77 | — | 23507 | 2954 | 14 | 13 | 15 | 0 | 0 | logfile |
✔ | 7QGU | 13959 | 2023-04-28 | 2021-12-10 | 4.75 | 7.20 | — | 5.6 | 0.010 | 1.50 | 1.0 | 0.04 | 15.78 | 0.02 | 1.064 | 11.45 | 0.26 | 6.6 | 91.0 | 2.3 | -1.82 | 0.70 | 0.57 | — | 5.5 | 0.009 | 1.09 | 0.0 | 0.05 | 20.48 | 0.01 | 1.102 | 77.49 | 0.00 | 10.9 | 88.3 | 0.8 | -1.78 | 2.90 | 0.82 | 0.84 | — | 135606 | 5791 | 54 | 4656 | 0 | 0 | 0 | logfile |
✔ | 5o9G | 3765 | 2023-04-25 | 2017-06-19 | 4.8 | 5.07 | 4.71 | 10.4 | 0.003 | 0.48 | 0.0 | 0.03 | 22.47 | 0.00 | 2.194 | 7.39 | 0.36 | 9.1 | 90.8 | 0.1 | -4.25 | 0.51 | 0.13 | — | 4.8 | 0.004 | 0.80 | 0.0 | 0.04 | 24.58 | 0.01 | 1.106 | 18.06 | 0.00 | 4.4 | 95.5 | 0.1 | -1.54 | 2.61 | 0.86 | 0.77 | — | 19681 | 1610 | 11 | 324 | 2 | 0 | 0 | logfile |
✔ | 7RPW | 24624 | 2023-04-21 | 2021-08-04 | 4.38 | 4.64 | — | 4.4 | 0.003 | 0.57 | 0.0 | 0.04 | 19.19 | 0.00 | 1.756 | 18.05 | 9.97 | 11.3 | 88.6 | 0.1 | -2.82 | 0.77 | 0.68 | — | 4.4 | 0.003 | 0.66 | 0.0 | 0.04 | 18.63 | 0.00 | 1.110 | 15.84 | 0.00 | 7.5 | 92.4 | 0.1 | -3.06 | 3.75 | 0.77 | 0.67 | — | 10594 | 1179 | 10 | 62 | 5 | 0 | 0 | logfile |
✔ | 6KPJ | 0748 | 2023-04-22 | 2019-08-15 | 2.56 | 3.82 | — | 3.3 | 0.014 | 0.94 | 0.0 | 0.06 | 12.22 | 0.00 | 1.218 | 8.38 | 0.00 | 6.7 | 93.3 | 0.0 | -4.33 | 0.85 | 0.86 | 3.83 | 3.3 | 0.005 | 0.73 | 1.0 | 0.13 | 14.32 | 0.00 | 1.110 | 6.83 | 0.50 | 3.1 | 96.9 | 0.0 | 0.92 | 0.69 | 0.85 | 0.87 | 3.62 | 62845 | 3936 | 24 | 0 | 48 | 0 | 31225 | logfile |
✔ | 8EVU | 28637 | 2023-04-22 | 2022-10-20 | 2.5804 | 3.19 | 2.52 | 2.9 | 0.003 | 0.44 | 0.0 | 0.04 | 10.09 | 0.00 | 2.279 | 2.29 | 0.08 | 1.3 | 98.7 | 0.0 | 1.17 | 0.78 | 0.92 | 4.78 | 2.9 | 0.006 | 0.58 | 0.0 | 0.04 | 13.31 | 0.00 | 1.114 | 4.50 | 0.88 | 2.5 | 97.5 | 0.0 | 1.40 | 0.42 | 0.76 | 0.91 | 3.89 | 11902 | 1540 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 7NSH | 12567 | 2023-04-22 | 2021-03-07 | 3.2 | 3.39 | 3.12 | 3.3 | 0.003 | 0.53 | 0.0 | 0.05 | 15.69 | 0.00 | 1.187 | 7.76 | 0.02 | 4.2 | 95.8 | 0.1 | 0.71 | 0.80 | 0.84 | 2.70 | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 16.92 | 0.00 | 1.115 | 8.46 | 0.33 | 4.0 | 96.0 | 0.0 | 0.81 | 0.52 | 0.79 | 0.89 | 2.50 | 112448 | 9643 | 79 | 1611 | 229 | 2 | 0 | logfile |
✔ | 7N0C | 24103 | 2023-04-20 | 2021-05-25 | 3.4 | 3.71 | — | 3.7 | 0.009 | 1.00 | 0.0 | 0.05 | 13.78 | 0.01 | 2.180 | 6.79 | 0.00 | 1.3 | 98.7 | 0.0 | -3.80 | 0.72 | 0.80 | 2.48 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 14.78 | 0.00 | 1.116 | 12.44 | 0.36 | 5.0 | 95.0 | 0.0 | -1.35 | 0.48 | 0.72 | 0.80 | 1.96 | 6088 | 644 | 6 | 49 | 7 | 1 | 0 | logfile |