Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZS9	11390	2021-04-17	2020-07-15	4.0	3.45	—	3.4	0.010	0.61	0.0	0.04	13.37	0.00	1.774	5.03	0.02	4.6	95.3	0.0	-2.33	0.78	0.69	—	3.4	0.008	0.67	0.0	0.04	14.14	0.01	0.758	14.17	0.00	5.1	94.9	0.0	-0.85	1.35	0.79	0.70	—	313705	14223	109	2487	205	0	144591	logfile
✔	6ZSB	11392	2021-04-16	2020-07-15	4.5	3.85	—	3.7	0.010	0.60	0.0	0.05	13.43	0.01	1.156	5.41	0.03	4.9	95.1	0.0	-2.46	0.80	0.69	—	3.7	0.007	0.73	0.0	0.04	14.66	0.01	0.780	18.67	0.00	7.3	92.7	0.0	-1.10	1.77	0.82	0.74	—	311969	14029	108	2518	248	0	142935	logfile
✔	5ND4	3622	2021-04-01	2017-03-07	4.4	5.55	—	5.5	0.039	1.93	11.0	0.24	21.74	0.01	1.678	25.87	15.57	14.5	77.1	8.3	-4.90	0.37	0.37	—	5.5	0.009	1.42	1.0	0.07	16.38	0.01	0.780	56.92	0.20	10.8	88.5	0.7	-3.62	1.95	0.47	0.64	—	9435	1175	6	1	6	0	0	logfile
✔	6ZPi	11340	2021-04-01	2020-07-08	4.5	4.63	—	4.4	0.039	1.69	3.0	0.12	15.44	0.01	1.667	13.68	0.00	4.6	95.4	0.0	-0.24	0.77	0.52	—	4.4	0.007	1.12	0.0	0.05	14.78	0.01	0.790	38.54	0.00	4.7	95.3	0.0	-0.38	0.97	0.83	0.75	—	9412	1184	6	1	5	0	0	logfile
✔	6ZP7	11337	2021-04-03	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.00	0.008	15.90	0.52	3.0	97.0	0.0	-0.93	0.64	0.59	1.49	3.7	0.003	0.68	0.0	0.11	13.28	0.00	0.791	10.12	0.04	3.9	96.1	0.0	0.09	1.37	0.82	0.84	2.32	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2021-04-03	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.00	0.012	14.01	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.003	0.67	0.0	0.11	13.27	0.00	0.792	9.71	0.04	4.0	96.0	0.0	0.21	0.72	0.82	0.85	2.52	23615	2861	33	0	92	0	0	logfile
✔	7D76	30602	2021-04-01	2020-10-03	3.1	3.39	—	3.4	0.052	1.55	0.0	0.27	14.33	0.01	2.167	8.25	0.00	4.7	95.3	0.0	-2.55	0.65	0.81	3.21	3.4	0.005	0.97	0.0	0.07	14.75	0.01	0.803	20.60	0.14	4.5	95.5	0.0	-1.29	1.08	0.66	0.82	3.05	7015	874	6	0	7	0	0	logfile
✔	5M5C	3444	2021-04-02	2016-10-21	4.8	5.57	—	5.4	0.044	1.73	0.0	0.13	11.63	0.01	2.060	7.99	0.06	4.2	95.8	0.0	-3.24	0.79	0.80	—	5.4	0.007	1.12	0.0	0.05	13.10	0.01	0.840	35.88	0.06	4.1	95.9	0.0	-2.35	0.91	0.80	0.80	—	14608	1826	11	2	6	8	0	logfile
✔	6DZV	8940	2021-04-01	2018-07-05	4.2	4.78	4.79	4.8	0.038	1.27	0.0	0.21	9.36	0.01	2.088	3.61	0.00	3.8	96.2	0.0	-4.08	0.49	0.64	—	4.8	0.005	1.04	0.0	0.06	12.45	0.01	0.887	27.61	0.00	5.5	94.3	0.1	-2.53	1.16	0.52	0.67	—	6121	765	4	0	4	0	0	logfile
✔	7CKX	30393	2021-04-02	2020-07-20	3.54	3.65	—	3.6	0.036	1.04	0.0	0.14	13.53	0.00	2.160	12.70	2.09	3.2	96.8	0.0	-3.07	0.59	0.71	1.45	3.6	0.006	0.87	0.0	0.05	13.83	0.01	0.925	29.65	0.00	3.7	96.3	0.0	-2.23	0.67	0.59	0.71	1.44	8112	1035	5	0	2	0	0	logfile
✔	6GEJ	4395	2021-04-04	2018-04-26	3.6	3.77	—	3.7	0.002	0.61	0.0	0.04	18.57	0.00	1.491	9.03	3.93	4.6	95.4	0.0	-2.70	0.82	0.77	0.98	3.7	0.003	0.64	0.0	0.04	18.81	0.00	0.925	9.56	0.00	4.1	95.8	0.0	-0.05	1.42	0.83	0.79	1.13	43702	4683	29	308	151	0	0	logfile
✔	6NDY	0443	2021-04-02	2018-12-14	3.6	3.70	—	3.6	0.004	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.005	0.72	0.0	0.04	13.97	0.00	0.942	10.89	0.00	5.2	94.8	0.0	-0.18	1.43	0.79	0.80	1.44	12531	1596	11	0	20	0	0	logfile
✔	7KHR	22880	2021-04-05	2020-10-21	3.62	3.58	—	3.5	0.035	1.89	9.0	0.08	15.58	0.01	1.100	6.06	0.27	4.6	95.3	0.0	-6.01	0.71	0.86	2.61	3.5	0.005	0.99	0.0	0.05	14.93	0.01	0.952	12.25	0.00	4.6	95.4	0.0	-3.27	0.98	0.72	0.86	2.34	61913	8212	44	0	36	0	0	logfile
✔	6VQT	21356	2021-04-01	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.21	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.1	0.004	0.73	0.0	0.04	14.01	0.00	0.959	9.77	0.00	3.4	96.6	0.0	2.10	0.71	0.78	0.86	1.60	9144	1168	4	0	6	0	0	logfile
✔	6TUP	10593	2021-04-03	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.3	0.025	1.99	0.0	0.19	25.49	0.01	0.963	94.99	0.00	2.9	97.1	0.0	-3.02	8.44	0.57	0.62	-0.04	22400	2300	100	300	0	0	0	logfile
✔	6TD5	10463	2021-04-04	2019-11-07	3.2	3.25	3.20	3.2	0.006	0.97	0.0	0.05	10.05	0.01	2.109	4.59	0.15	4.4	95.6	0.0	-4.67	0.75	0.83	3.66	3.2	0.003	0.61	0.0	0.04	13.79	0.00	0.970	8.67	0.04	3.6	96.4	0.0	0.02	1.16	0.77	0.86	2.95	49408	6360	34	0	8	0	0	logfile
✔	6oo2	20142	2021-04-02	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	6.87	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.3	0.002	0.67	0.0	0.04	13.07	0.00	0.978	11.52	0.00	4.0	96.0	0.0	1.74	1.16	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile
✔	6U9V	20702	2021-04-03	2019-09-09	2.9	3.06	—	3.1	0.009	0.83	0.0	0.08	14.68	0.00	2.090	2.46	0.57	4.9	95.1	0.0	-1.99	0.64	0.76	3.46	3.1	0.003	0.61	0.0	0.04	13.98	0.00	0.983	7.34	0.14	7.2	92.8	0.0	-0.88	1.68	0.66	0.81	3.61	26701	1680	6	3	51	0	12634	logfile
✔	6PEK	20327	2021-04-01	2019-06-20	4.2	4.25	—	4.2	0.004	0.71	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.73	0.0	0.04	14.55	0.00	0.987	13.79	0.00	2.5	97.5	0.0	-0.06	1.46	0.72	0.77	—	11106	1405	11	0	13	0	0	logfile
✔	6PV7	20487	2021-04-02	2019-07-19	3.34	3.54	3.37	3.5	0.062	2.28	0.0	0.40	10.44	0.01	1.952	5.21	0.64	5.0	95.0	0.0	-2.91	0.75	0.83	3.22	3.5	0.006	1.27	0.0	0.11	12.70	0.01	0.991	19.17	0.00	4.6	95.4	0.0	-1.68	0.61	0.75	0.85	2.83	20048	2379	18	0	58	8	0	logfile

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