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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5o5J | 3748 | 2022-12-22 | 2017-06-02 | 3.45 | 3.51 | — | 3.4 | 0.008 | 1.20 | 0.0 | 0.05 | 17.48 | 0.01 | 1.740 | 9.43 | 11.65 | 5.4 | 94.5 | 0.1 | -3.62 | 0.65 | 0.87 | 1.42 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 16.50 | 0.00 | 1.014 | 12.74 | 0.85 | 4.4 | 95.4 | 0.1 | 0.27 | 0.68 | 0.64 | 0.85 | 1.54 | 52163 | 2406 | 28 | 1536 | 219 | 0 | 0 | logfile |
✔ | 7UiM | 26549 | 2022-12-13 | 2022-03-29 | 3.1 | 4.12 | 3.81 | 3.6 | 0.005 | 0.87 | 0.0 | 0.04 | 18.46 | 0.01 | 1.903 | 9.06 | 0.00 | 3.7 | 96.3 | 0.0 | -1.28 | 0.67 | 0.47 | 0.98 | 3.6 | 0.005 | 0.75 | 0.0 | 0.04 | 19.49 | 0.00 | 1.021 | 31.13 | 0.29 | 6.3 | 93.4 | 0.3 | -1.03 | 2.98 | 0.79 | 0.76 | 0.71 | 14772 | 387 | 3 | 541 | 15 | 0 | 0 | logfile |
✔ | 6oAB | 20000 | 2022-12-14 | 2019-03-15 | 3.6 | 3.87 | 3.73 | 3.8 | 0.006 | 1.07 | 1.0 | 0.05 | 16.24 | 0.01 | 1.245 | 9.41 | 0.34 | 7.7 | 92.1 | 0.2 | -5.58 | 0.68 | 0.68 | 0.81 | 3.7 | 0.003 | 0.86 | 0.0 | 0.05 | 17.26 | 0.00 | 1.030 | 14.06 | 0.39 | 8.2 | 91.8 | 0.0 | -1.76 | 2.17 | 0.73 | 0.79 | 1.33 | 19690 | 2537 | 11 | 0 | 18 | 0 | 0 | logfile |
✔ | 6ZXF | 11519 | 2022-12-15 | 2020-07-29 | 3.7 | 3.68 | 3.69 | 3.5 | 0.010 | 0.98 | 0.0 | 0.05 | 16.80 | 0.01 | 1.937 | 8.55 | 0.65 | 8.5 | 91.5 | 0.0 | -3.70 | 0.87 | 0.81 | 1.63 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 16.91 | 0.00 | 1.039 | 14.84 | 0.59 | 5.6 | 94.4 | 0.0 | -1.07 | 0.57 | 0.87 | 0.82 | 1.39 | 80133 | 5758 | 41 | 1656 | 6 | 0 | 0 | logfile |
✔ | 6FYY | 4328 | 2022-12-19 | 2018-03-12 | 3.02 | 3.15 | 3.09 | 3.1 | 0.008 | 1.34 | 57.0 | 0.11 | 20.67 | 0.02 | 0.817 | 7.50 | 10.74 | 8.2 | 89.1 | 2.7 | -1.95 | 0.63 | 0.83 | 1.68 | 3.1 | 0.005 | 0.78 | 0.0 | 0.04 | 19.30 | 0.01 | 1.048 | 15.42 | 0.86 | 7.1 | 92.2 | 0.7 | -0.33 | 1.43 | 0.66 | 0.84 | 1.61 | 104316 | 8066 | 54 | 1886 | 200 | 0 | 0 | logfile |
✔ | 8EW3 | 28641 | 2022-12-12 | 2022-10-21 | 2.65159 | 3.20 | 2.63 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 10.09 | 0.00 | 2.260 | 3.12 | 0.16 | 1.7 | 98.3 | 0.0 | 1.12 | 0.78 | 0.90 | 4.36 | 3.0 | 0.004 | 0.57 | 0.0 | 0.04 | 13.47 | 0.00 | 1.068 | 6.12 | 0.96 | 2.4 | 97.6 | 0.0 | 1.33 | 1.18 | 0.75 | 0.90 | 3.48 | 11902 | 1540 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 7S0S | 24792 | 2022-12-17 | 2021-08-31 | 3.05 | 3.10 | — | 3.1 | 0.008 | 0.83 | 0.0 | 0.05 | 16.21 | 0.01 | 1.722 | 9.88 | 1.24 | 6.2 | 93.8 | 0.0 | -1.73 | 0.58 | 0.66 | 0.70 | 3.1 | 0.006 | 0.70 | 0.0 | 0.04 | 16.36 | 0.01 | 1.071 | 9.57 | 0.61 | 5.8 | 94.2 | 0.0 | -1.41 | 0.97 | 0.70 | 0.85 | 2.56 | 100057 | 3946 | 46 | 3236 | 407 | 0 | 0 | logfile |
✔ | 7o5H | 12736 | 2022-12-19 | 2021-04-08 | 3.1 | 2.93 | 3.04 | 2.8 | 0.002 | 0.33 | 0.0 | 0.03 | 12.30 | 0.00 | 1.262 | 5.95 | 0.98 | 2.1 | 97.9 | 0.0 | 1.09 | 0.86 | 0.83 | 1.84 | 2.8 | 0.006 | 0.67 | 0.0 | 0.04 | 14.61 | 0.01 | 1.074 | 13.60 | 0.42 | 3.8 | 96.2 | 0.0 | 0.27 | 1.48 | 0.87 | 0.85 | 1.30 | 34436 | 1730 | 22 | 964 | 167 | 0 | 0 | logfile |
✔ | 8E5L | 27914 | 2022-12-14 | 2022-08-22 | 4.2 | 8.91 | 5.82 | 7.6 | 0.003 | 0.64 | 0.0 | 0.04 | 11.68 | 0.00 | 1.299 | 26.62 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.63 | 0.37 | — | 7.5 | 0.004 | 0.78 | 0.0 | 0.04 | 12.09 | 0.00 | 1.079 | 28.99 | 0.00 | 3.5 | 96.5 | 0.0 | 0.34 | 1.26 | 0.89 | 0.84 | — | 20058 | 2502 | 13 | 9 | 18 | 0 | 0 | logfile |
✔ | 5GAF | 8002 | 2022-12-17 | 2015-11-25 | 4.3 | 4.42 | — | 4.3 | 0.007 | 1.09 | 1.0 | 0.05 | 15.95 | 0.01 | 1.266 | 8.96 | 11.04 | 3.5 | 96.4 | 0.1 | -3.28 | 0.63 | 0.64 | — | 4.3 | 0.004 | 0.65 | 0.0 | 0.03 | 14.91 | 0.00 | 1.080 | 19.19 | 0.00 | 4.6 | 95.3 | 0.1 | -0.98 | 1.99 | 0.71 | 0.84 | — | 96182 | 3889 | 47 | 3049 | 452 | 0 | 0 | logfile |
✔ | 6PEK | 20327 | 2022-12-12 | 2019-06-20 | 4.2 | 4.25 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.03 | 13.79 | 0.00 | 1.913 | 4.42 | 0.00 | 0.8 | 99.2 | 0.0 | -2.47 | 0.70 | 0.74 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 14.95 | 0.00 | 1.080 | 14.73 | 0.00 | 2.7 | 97.3 | 0.0 | -0.40 | 1.46 | 0.72 | 0.77 | — | 11106 | 1405 | 11 | 0 | 13 | 0 | 0 | logfile |
✔ | 3J9S | 6272 | 2022-12-13 | 2015-02-19 | 2.6 | 3.84 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.104 | 287.40 | 6.86 | 1.3 | 98.0 | 0.8 | 1.95 | 0.60 | 0.63 | 2.26 | 3.6 | 0.032 | 2.66 | 41.0 | 0.17 | 20.84 | 0.02 | 1.083 | 172.48 | 7.64 | 19.4 | 79.1 | 1.5 | -3.76 | 4.12 | 0.56 | 0.66 | 1.10 | 13084 | 1588 | 4 | 0 | 20 | 420 | 0 | logfile |
✔ | 6ZoJ | 11320 | 2022-12-15 | 2020-07-07 | 2.8 | 3.07 | — | 3.0 | 0.002 | 0.51 | 0.0 | 0.03 | 14.31 | 0.00 | 1.694 | 4.49 | 1.39 | 2.3 | 97.7 | 0.0 | 0.76 | 0.80 | 0.85 | 3.50 | 2.9 | 0.005 | 0.63 | 0.0 | 0.04 | 15.90 | 0.00 | 1.086 | 5.53 | 2.45 | 3.3 | 96.7 | 0.0 | 0.69 | 2.45 | 0.82 | 0.88 | 3.30 | 75783 | 4914 | 45 | 1704 | 169 | 0 | 0 | logfile |
✔ | 7S6C | 24868 | 2022-12-13 | 2021-09-13 | 3.1 | 3.69 | — | 3.3 | 0.005 | 0.74 | 0.0 | 0.04 | 13.96 | 0.00 | 2.068 | 4.32 | 0.00 | 4.0 | 96.0 | 0.0 | -0.30 | 0.82 | 0.76 | 2.85 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 14.76 | 0.00 | 1.086 | 9.01 | 0.04 | 3.9 | 96.1 | 0.0 | 0.13 | 0.34 | 0.84 | 0.80 | 2.88 | 47369 | 3190 | 10 | 0 | 2 | 0 | 23420 | logfile |
✔ | 7BoE | 12240 | 2022-12-22 | 2021-01-25 | 2.9 | 3.08 | 2.98 | 2.9 | 0.008 | 0.78 | 3.0 | 0.05 | 14.41 | 0.02 | 1.885 | 6.98 | 0.66 | 2.3 | 97.7 | 0.0 | -1.12 | 0.77 | 0.78 | 2.22 | 2.9 | 0.006 | 0.73 | 0.0 | 0.04 | 15.76 | 0.01 | 1.088 | 15.01 | 2.73 | 3.6 | 96.4 | 0.0 | -0.23 | 0.75 | 0.83 | 0.89 | 2.15 | 51969 | 2400 | 23 | 1534 | 153 | 0 | 0 | logfile |
✔ | 7NVN | 12607 | 2022-12-14 | 2021-03-15 | 3.0 | 3.12 | 2.93 | 3.1 | 0.004 | 0.62 | 0.0 | 0.04 | 14.51 | 0.00 | 1.909 | 8.81 | 1.66 | 3.2 | 96.7 | 0.1 | -2.07 | 0.64 | 0.77 | 2.98 | 3.1 | 0.003 | 0.64 | 0.0 | 0.04 | 16.96 | 0.00 | 1.097 | 10.23 | 2.65 | 3.3 | 96.7 | 0.0 | 0.70 | 1.19 | 0.74 | 0.85 | 2.89 | 69139 | 8970 | 51 | 0 | 48 | 19 | 0 | logfile |
✔ | 6TUP | 10593 | 2022-12-14 | 2020-01-08 | 3.2 | 3.52 | — | 3.3 | 0.011 | 1.02 | 0.0 | 0.05 | 21.23 | 0.00 | 0.032 | 54.60 | 0.00 | 0.0 | 100.0 | 0.0 | -7.04 | 0.49 | 0.47 | 1.19 | 3.4 | 0.039 | 2.56 | 0.0 | 0.24 | 27.07 | 0.01 | 1.098 | 116.88 | 1.25 | 3.2 | 96.8 | 0.0 | -2.76 | 8.49 | 0.54 | 0.59 | -0.09 | 22400 | 2300 | 100 | 300 | 0 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2022-12-11 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 20.86 | 0.01 | 0.865 | 18.52 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.04 | 16.56 | 0.01 | 1.105 | 28.92 | 0.00 | 7.7 | 91.8 | 0.5 | -1.66 | 2.16 | 0.87 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 8EVU | 28637 | 2022-12-12 | 2022-10-20 | 2.5804 | 3.19 | 2.52 | 2.9 | 0.003 | 0.44 | 0.0 | 0.04 | 10.09 | 0.00 | 2.279 | 2.75 | 0.08 | 1.3 | 98.7 | 0.0 | 1.17 | 0.78 | 0.92 | 4.78 | 2.9 | 0.004 | 0.54 | 0.0 | 0.04 | 13.46 | 0.00 | 1.105 | 4.75 | 0.56 | 2.4 | 97.6 | 0.0 | 1.43 | 0.42 | 0.76 | 0.91 | 3.98 | 11902 | 1540 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 7ZC6 | 14622 | 2022-12-12 | 2022-03-25 | 4.27 | 4.35 | 4.17 | 4.3 | 0.014 | 1.95 | 12.0 | 2.55 | 19.20 | 0.01 | 2.098 | 17.92 | 10.79 | 6.1 | 93.1 | 0.8 | -1.59 | 0.66 | 0.74 | — | 4.3 | 0.020 | 3.90 | 0.0 | 0.76 | 14.82 | 0.00 | 1.111 | 18.21 | 0.00 | 3.8 | 96.2 | 0.0 | -0.94 | 0.74 | 0.68 | 0.78 | — | 11428 | 1513 | 11 | 0 | 12 | 0 | 0 | logfile |