Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6U9V	20702	2021-09-05	2019-09-09	2.9	3.06	—	3.1	0.009	0.83	0.0	0.08	15.25	0.00	2.090	2.46	0.57	4.9	95.1	0.0	-1.99	0.64	0.76	3.46	3.1	0.003	0.61	0.0	0.04	16.24	0.00	0.994	7.63	1.43	7.2	92.8	0.0	-0.64	1.65	0.66	0.81	3.55	26701	1680	6	3	51	0	12634	logfile
✔	6NTS	0510	2021-09-03	2019-01-30	3.63	4.31	3.00	3.6	0.016	0.51	0.0	0.03	13.21	0.00	1.917	1.91	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.7	0.003	0.64	0.0	0.04	14.98	0.00	0.999	7.88	0.18	2.8	97.2	0.0	0.80	2.33	0.92	0.85	1.21	9956	1240	5	0	3	0	0	logfile
✔	6GiY	0008	2021-09-05	2018-05-15	4.3	4.14	—	4.0	0.007	1.18	0.0	0.06	10.19	0.01	2.232	6.17	0.29	12.7	87.1	0.3	-5.09	0.73	0.77	—	4.0	0.007	0.95	1.0	0.04	12.04	0.01	1.010	14.69	0.00	10.6	89.3	0.0	-1.87	0.98	0.73	0.76	—	28969	3649	9	0	0	0	0	logfile
✔	6TUP	10593	2021-09-04	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.6	0.032	2.22	0.0	0.21	26.94	0.01	1.011	99.23	1.25	2.0	98.0	0.0	-1.97	9.62	0.56	0.59	-0.04	22400	2300	100	300	0	0	0	logfile
✔	7NVX	12616	2021-09-04	2021-03-16	3.9	3.92	3.77	3.8	0.003	0.49	0.0	0.04	15.65	0.00	1.971	6.57	0.00	4.5	95.5	0.0	0.85	0.70	0.64	1.31	3.8	0.004	0.75	0.0	0.04	18.46	0.01	1.012	14.96	0.28	5.0	95.0	0.0	-0.65	0.96	0.71	0.66	0.97	23663	2796	18	50	35	0	0	logfile
✔	6TZ1	20586	2021-09-03	2019-08-09	3.4	3.44	—	3.4	0.008	0.95	0.0	0.05	10.10	0.01	2.207	4.35	0.47	5.1	94.9	0.0	-3.92	0.54	0.85	3.95	3.4	0.003	0.59	0.0	0.04	14.45	0.00	1.012	6.56	0.20	3.8	96.2	0.0	-0.16	1.25	0.54	0.87	3.09	14212	1709	5	23	1	0	0	logfile
✔	6GEN	4396	2021-09-06	2018-04-27	3.6	4.67	—	4.5	0.003	0.75	0.0	0.04	20.46	0.01	2.109	5.88	8.77	3.9	96.0	0.0	-4.51	0.78	0.59	-0.18	4.5	0.004	0.78	0.0	0.04	21.28	0.00	1.014	18.12	0.58	5.0	95.0	0.0	-0.45	1.47	0.84	0.74	0.09	44481	4683	29	346	151	0	0	logfile
✔	6PJ6	20353	2021-09-12	2019-06-27	2.2	2.48	—	2.5	0.011	1.07	14.0	0.06	15.16	0.02	1.227	5.23	2.25	5.6	94.4	0.1	-2.65	0.62	0.84	4.58	2.5	0.007	0.78	0.0	0.05	15.83	0.01	1.021	7.99	2.99	5.8	94.2	0.0	-1.06	1.30	0.64	0.86	4.41	154542	3356	67	3016	187	3897	59624	logfile
✔	7A5G	11642	2021-09-03	2020-08-21	4.33	3.50	4.16	3.5	0.008	1.16	2.0	0.06	17.97	0.01	1.222	7.14	0.96	9.4	90.3	0.3	-4.14	0.66	0.74	—	3.5	0.009	0.96	4.0	0.05	17.09	0.01	1.035	19.25	0.09	10.0	89.9	0.1	-1.88	0.73	0.66	0.73	—	170507	13843	114	2722	203	79	0	logfile
✔	6Q97	4476	2021-09-12	2018-12-17	3.9	3.69	—	20.0	0.011	1.20	0.0	0.16	18.93	0.02	1.320	6.98	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.006	0.96	2.0	0.05	20.64	0.01	1.041	22.12	0.12	9.7	90.3	0.0	-3.62	2.64	0.31	0.25	0.31	156609	6124	72	5051	441	2	0	logfile
✔	6KN8	0729	2021-09-03	2019-08-03	4.8	8.89	—	8.4	0.019	1.81	10.0	0.10	12.39	0.01	2.211	8.87	0.41	2.0	97.4	0.5	-0.24	0.74	0.43	—	8.4	0.076	4.53	940.0	0.26	14.49	0.02	1.047	220.72	0.24	9.1	83.4	7.5	-2.34	10.77	0.69	0.37	—	60966	7669	44	0	15	0	0	logfile
✔	6YDP	10778	2021-09-05	2020-03-20	3.0	3.11	3.00	3.1	0.002	0.50	0.0	0.03	15.87	0.00	1.147	8.21	1.48	3.7	96.2	0.0	-2.35	0.75	0.78	1.93	3.1	0.007	0.75	1.0	0.04	17.96	0.01	1.049	12.68	3.57	4.9	95.1	0.0	-0.37	1.57	0.80	0.88	2.15	179513	15179	122	2648	339	5	0	logfile
✔	7ACJ	11717	2021-09-11	2020-09-11	3.2	3.44	3.22	3.1	0.003	0.64	19.0	0.03	15.46	0.02	0.852	13.21	0.61	5.1	94.7	0.2	-0.99	0.85	0.81	1.87	3.1	0.007	0.80	0.0	0.04	17.29	0.01	1.051	19.08	0.94	9.4	90.5	0.1	-1.68	1.64	0.88	0.87	2.07	151803	5864	64	4920	310	0	0	logfile
✔	6QX9	4665	2021-09-06	2019-03-07	3.28	3.32	—	3.3	0.011	1.31	35.0	0.10	16.06	0.01	0.530	12.75	2.29	5.5	94.1	0.3	-3.26	0.46	0.51	1.71	3.3	0.007	0.82	4.0	0.04	16.73	0.01	1.054	16.29	0.11	4.7	95.3	0.0	-0.32	0.85	0.57	0.76	1.65	137494	15560	77	565	36	0	0	logfile
✔	6i0Y	0322	2021-09-06	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	12.64	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.006	0.87	0.0	0.04	16.53	0.01	1.055	23.86	1.60	14.4	83.6	2.0	-3.07	1.75	0.64	0.78	0.84	93619	3551	48	3049	144	439	0	logfile
✔	3JCD	6549	2021-09-09	2015-12-01	3.7	5.07	—	19.0	0.006	0.84	0.0	0.04	14.69	0.00	1.289	14.54	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.012	1.73	4.0	0.08	22.58	0.01	1.060	92.69	0.27	19.3	79.2	1.5	-4.64	3.41	0.76	0.52	0.22	147815	5982	57	4715	0	0	0	logfile
✔	6PEK	20327	2021-09-03	2019-06-20	4.2	4.25	—	4.2	0.004	0.71	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.73	0.0	0.04	14.26	0.00	1.061	13.75	0.00	2.6	97.4	0.0	-0.10	1.46	0.72	0.76	—	11106	1405	11	0	13	0	0	logfile
✔	6R6P	4737	2021-09-11	2019-03-27	3.1	3.17	—	3.1	0.003	0.80	0.0	0.04	15.36	0.01	1.319	5.06	0.17	5.8	94.1	0.1	-3.27	0.72	0.76	2.30	3.1	0.007	0.74	1.0	0.04	17.05	0.01	1.064	11.29	0.76	5.8	94.1	0.1	-0.60	1.31	0.78	0.86	2.54	218067	11673	98	5797	164	0	0	logfile
✔	6TJV	10513	2021-09-05	2019-11-27	3.2	3.36	—	3.3	0.009	1.26	6.0	0.08	15.70	0.02	1.299	17.83	1.46	11.4	88.0	0.6	-4.03	0.62	0.82	2.17	3.3	0.004	0.73	0.0	0.04	16.74	0.01	1.066	12.64	0.55	9.4	90.4	0.2	-0.69	0.51	0.66	0.84	1.59	33838	4274	26	0	15	1	0	logfile
✔	6oAA	0666	2021-09-04	2019-03-15	4.1	4.22	4.19	4.2	0.005	1.04	1.0	0.05	16.65	0.01	1.317	13.43	0.34	8.3	91.5	0.3	-5.52	0.63	0.70	—	4.2	0.004	0.85	0.0	0.05	15.34	0.00	1.073	14.31	0.00	10.0	89.9	0.1	-2.03	0.95	0.67	0.76	—	19546	2494	10	0	14	0	0	logfile

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