Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZP5	11336	2021-06-03	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.00	0.012	14.01	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.006	0.75	0.0	0.11	15.04	0.00	0.795	11.55	0.44	4.3	95.7	0.0	0.13	0.72	0.83	0.86	2.04	23615	2861	33	0	92	0	0	logfile
✔	5M5C	3444	2021-06-02	2016-10-21	4.8	5.57	—	5.4	0.044	1.73	0.0	0.13	11.63	0.01	2.060	7.99	0.06	4.2	95.8	0.0	-3.24	0.79	0.80	—	5.4	0.007	1.12	0.0	0.05	13.10	0.01	0.840	35.88	0.06	4.1	95.9	0.0	-2.35	0.91	0.80	0.80	—	14608	1826	11	2	6	8	0	logfile
✔	6WWN	21941	2021-06-02	2020-05-09	3.5	2.22	3.47	2.2	0.038	1.50	0.0	0.12	14.99	0.01	1.991	6.13	0.66	6.7	93.1	0.2	-3.70	0.54	0.74	3.19	2.2	0.006	0.90	0.0	0.06	16.18	0.01	0.853	14.76	0.19	5.6	94.4	0.1	-3.07	0.43	0.55	0.75	3.18	9784	1230	6	1	6	0	0	logfile
✔	7LJR	23400	2021-06-03	2021-01-30	3.66	3.92	—	3.7	0.013	1.83	9.0	0.10	13.96	0.01	2.509	0.23	1.12	9.2	90.0	0.8	-1.91	0.69	0.65	1.95	3.7	0.008	0.90	0.0	0.05	14.93	0.01	0.873	12.99	0.03	6.7	93.2	0.1	-0.84	1.27	0.77	0.77	1.44	26291	3378	5	0	0	0	0	logfile
✔	7JZV	22581	2021-06-02	2020-09-02	3.9	3.86	3.95	3.8	0.013	1.33	0.0	0.07	24.07	0.00	2.117	1.10	0.22	1.5	98.3	0.2	0.60	0.55	0.59	1.37	3.8	0.010	1.03	0.0	0.04	25.84	0.01	0.877	17.33	0.22	2.8	97.1	0.1	1.68	0.89	0.59	0.77	0.95	14339	1093	14	278	4	0	0	logfile
✔	5SYF	8322	2021-06-07	2016-08-11	3.5	4.01	—	4.0	0.045	2.00	26.0	0.16	16.60	0.01	0.392	16.56	3.37	4.9	94.7	0.4	-0.39	0.56	0.76	1.19	4.0	0.007	1.17	1.0	0.05	17.74	0.01	0.877	27.38	0.18	4.4	95.5	0.1	0.09	0.84	0.56	0.80	1.26	177268	22152	104	26	78	0	0	logfile
✔	6DZV	8940	2021-06-01	2018-07-05	4.2	4.78	4.79	4.8	0.038	1.27	0.0	0.21	9.36	0.01	2.088	3.61	0.00	3.8	96.2	0.0	-4.08	0.49	0.64	—	4.8	0.005	1.04	0.0	0.06	12.45	0.01	0.887	27.61	0.00	5.5	94.3	0.1	-2.53	1.16	0.52	0.67	—	6121	765	4	0	4	0	0	logfile
✔	6GEJ	4395	2021-06-05	2018-04-26	3.6	3.77	—	3.7	0.002	0.61	0.0	0.04	18.57	0.00	1.491	9.03	3.93	4.6	95.4	0.0	-2.70	0.82	0.77	0.98	3.7	0.004	0.67	0.0	0.04	20.08	0.00	0.890	10.24	0.25	4.3	95.7	0.0	0.06	0.88	0.83	0.80	0.90	43702	4683	29	308	151	0	0	logfile
✔	6GQB	0048	2021-06-02	2018-06-07	3.9	3.98	—	3.9	0.008	1.19	1.0	0.06	17.18	0.01	2.146	8.35	1.22	16.6	83.0	0.5	-5.75	0.81	0.75	1.46	3.9	0.008	0.87	1.0	0.05	17.50	0.01	0.913	20.94	0.36	15.7	84.0	0.3	-4.72	0.43	0.83	0.79	1.17	212143	12373	93	5362	10	0	0	logfile
✔	7NVX	12616	2021-06-03	2021-03-16	3.9	3.92	3.77	3.8	0.003	0.49	0.0	0.04	15.65	0.00	1.971	6.57	0.00	4.5	95.5	0.0	0.85	0.70	0.64	1.31	3.8	0.005	0.77	0.0	0.04	18.20	0.01	0.931	18.01	0.48	5.6	94.3	0.0	-0.67	1.45	0.72	0.67	1.25	23663	2796	18	50	35	0	0	logfile
✔	6NDY	0443	2021-06-02	2018-12-14	3.6	3.70	—	3.6	0.004	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.003	0.71	0.0	0.04	16.28	0.01	0.932	11.77	0.22	5.8	94.2	0.0	-0.05	1.45	0.79	0.81	0.99	12531	1596	11	0	20	0	0	logfile
✔	6LQU	0954	2021-06-06	2020-01-14	3.7	3.85	—	3.7	0.009	1.08	0.0	0.06	16.11	0.01	2.114	7.27	0.93	9.7	90.2	0.1	-4.24	0.74	0.66	1.48	3.7	0.006	0.80	0.0	0.04	16.62	0.01	0.936	16.96	0.15	8.5	91.5	0.0	-0.88	1.65	0.80	0.78	1.35	227765	25232	74	1940	64	0	0	logfile
✔	6WWH	21935	2021-06-02	2020-05-09	3.8	3.38	3.84	3.9	0.040	1.63	2.0	0.13	15.55	0.03	1.626	11.82	2.92	6.0	93.9	0.2	-3.03	0.67	0.80	2.20	3.9	0.008	1.20	0.0	0.06	17.84	0.01	0.965	38.43	0.71	5.1	94.9	0.0	-2.14	0.91	0.66	0.80	2.10	19685	2471	12	2	10	0	0	logfile
✔	6oo2	20142	2021-06-02	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	6.87	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.3	0.002	0.67	0.0	0.04	13.07	0.00	0.978	11.52	0.00	4.0	96.0	0.0	1.74	1.16	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile
✔	6PEK	20327	2021-06-02	2019-06-20	4.2	4.25	—	4.2	0.004	0.71	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.73	0.0	0.04	14.55	0.00	0.987	13.79	0.00	2.5	97.5	0.0	-0.06	1.46	0.72	0.77	—	11106	1405	11	0	13	0	0	logfile
✔	6Q97	4476	2021-06-06	2018-12-17	3.9	3.69	—	20.0	0.011	1.21	0.0	0.16	18.90	0.02	1.320	6.98	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.006	1.09	0.0	0.05	21.12	0.01	1.000	26.09	0.58	11.9	88.1	0.1	-3.43	2.83	0.33	0.28	0.27	156609	6124	72	5051	441	2	0	logfile
✔	6FTJ	4317	2021-06-05	2018-02-22	4.7	4.88	—	4.7	0.011	1.40	18.0	0.10	19.95	0.01	0.475	12.00	11.77	9.8	87.8	2.4	-4.06	0.63	0.62	—	4.7	0.008	1.12	0.0	0.05	19.65	0.01	1.008	54.11	0.03	14.3	85.2	0.5	-2.87	2.78	0.68	0.72	—	152111	8263	73	3938	461	0	0	logfile
✔	6PJ6	20353	2021-06-06	2019-06-27	2.2	2.48	—	2.5	0.011	1.06	14.0	0.06	15.16	0.02	1.227	5.23	2.25	5.6	94.4	0.1	-2.65	0.62	0.84	4.58	2.5	0.008	0.79	0.0	0.05	15.82	0.01	1.008	7.99	2.65	6.0	94.0	0.0	-1.12	1.31	0.64	0.86	4.49	154542	3356	67	3016	187	3897	59624	logfile
✔	6U9V	20702	2021-06-03	2019-09-09	2.9	3.06	—	3.1	0.009	0.83	0.0	0.08	14.68	0.00	2.090	2.46	0.57	4.9	95.1	0.0	-1.99	0.64	0.76	3.46	3.1	0.003	0.60	0.0	0.04	16.33	0.00	1.012	7.34	1.43	6.7	93.3	0.0	-0.63	1.29	0.66	0.81	3.47	26701	1680	6	3	51	0	12634	logfile
✔	7LVQ	23540	2021-06-02	2021-02-26	2.9	2.12	2.86	2.0	0.044	1.76	1.0	0.14	14.98	0.01	1.920	5.31	0.66	6.4	93.5	0.1	-3.20	0.55	0.77	4.09	2.0	0.008	1.10	0.0	0.06	16.58	0.01	1.032	16.08	0.66	5.5	94.5	0.0	-2.52	0.94	0.57	0.79	4.14	9767	1226	6	1	5	0	0	logfile

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