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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5TAZ | 8390 | 2022-05-14 | 2016-09-10 | 4.3 | 4.46 | 4.85 | 4.3 | 0.004 | 0.86 | 4.0 | 0.05 | 9.92 | 0.01 | 1.373 | 4.90 | 0.58 | 10.2 | 89.6 | 0.2 | -5.04 | 0.74 | 0.73 | — | 4.3 | 0.008 | 0.92 | 2.0 | 0.04 | 12.16 | 0.01 | 0.886 | 20.48 | 0.00 | 12.5 | 87.3 | 0.2 | -2.18 | 0.83 | 0.75 | 0.77 | — | 121276 | 13500 | 12 | 0 | 3712 | 0 | 0 | logfile |
✔ | 6GEJ | 4395 | 2022-05-17 | 2018-04-26 | 3.6 | 3.77 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 18.57 | 0.00 | 1.491 | 9.16 | 3.93 | 4.6 | 95.4 | 0.0 | -2.70 | 0.82 | 0.77 | 0.98 | 3.7 | 0.005 | 0.84 | 0.0 | 0.04 | 20.68 | 0.01 | 0.891 | 11.32 | 0.40 | 4.8 | 95.2 | 0.0 | -0.31 | 0.84 | 0.84 | 0.80 | 1.01 | 43702 | 4683 | 29 | 308 | 151 | 0 | 0 | logfile |
✔ | 7ACR | 11718 | 2022-05-23 | 2020-09-11 | 3.44 | 3.72 | 3.11 | 2.6 | 0.003 | 0.69 | 21.0 | 0.04 | 15.49 | 0.02 | 0.444 | 14.10 | 1.77 | 5.3 | 94.3 | 0.4 | -1.02 | 0.87 | 0.78 | 1.12 | 2.5 | 0.006 | 0.81 | 0.0 | 0.04 | 17.40 | 0.01 | 0.908 | 23.52 | 0.81 | 9.0 | 90.9 | 0.1 | -2.06 | 1.64 | 0.89 | 0.85 | 1.23 | 151668 | 5858 | 66 | 4920 | 214 | 0 | 0 | logfile |
✔ | 6T59 | 10380 | 2022-05-18 | 2019-10-15 | 3.11 | 3.19 | 3.02 | 7.3 | 0.011 | 0.83 | 0.0 | 0.05 | 17.10 | 0.00 | 1.148 | 10.88 | 0.76 | 8.9 | 91.0 | 0.1 | -5.04 | 0.22 | 0.01 | 0.07 | 3.1 | 0.006 | 0.97 | 0.0 | 0.05 | 19.44 | 0.01 | 0.922 | 26.27 | 0.78 | 9.6 | 90.4 | 0.0 | -2.67 | 2.07 | 0.59 | 0.59 | 0.42 | 143047 | 7383 | 64 | 3890 | 225 | 0 | 0 | logfile |
✔ | 6Q97 | 4476 | 2022-05-25 | 2018-12-17 | 3.9 | 3.69 | — | 20.0 | 0.011 | 1.20 | 0.0 | 0.16 | 18.93 | 0.02 | 1.320 | 7.03 | 0.38 | 10.1 | 89.8 | 0.1 | -5.34 | 0.15 | 0.01 | 0.22 | 3.6 | 0.008 | 1.00 | 0.0 | 0.05 | 20.31 | 0.01 | 0.925 | 23.65 | 0.12 | 10.6 | 89.4 | 0.0 | -3.47 | 2.14 | 0.26 | 0.21 | 0.31 | 156609 | 6124 | 72 | 5051 | 441 | 2 | 0 | logfile |
✔ | 6PJ6 | 20353 | 2022-05-24 | 2019-06-27 | 2.2 | 2.48 | — | 2.5 | 0.011 | 1.07 | 14.0 | 0.06 | 15.16 | 0.02 | 1.227 | 5.32 | 2.25 | 5.6 | 94.4 | 0.1 | -2.65 | 0.62 | 0.85 | 4.58 | 2.5 | 0.006 | 0.72 | 0.0 | 0.04 | 15.73 | 0.01 | 0.931 | 7.61 | 2.47 | 5.6 | 94.3 | 0.0 | -0.99 | 1.30 | 0.63 | 0.86 | 4.35 | 154542 | 3356 | 67 | 3016 | 187 | 3897 | 59624 | logfile |
✔ | 7ACJ | 11717 | 2022-05-23 | 2020-09-11 | 3.2 | 3.44 | 3.22 | 3.1 | 0.003 | 0.64 | 19.0 | 0.03 | 15.46 | 0.02 | 0.852 | 13.36 | 0.61 | 5.1 | 94.7 | 0.2 | -0.99 | 0.85 | 0.81 | 1.87 | 3.1 | 0.006 | 0.77 | 0.0 | 0.04 | 17.01 | 0.01 | 0.953 | 17.63 | 0.69 | 8.4 | 91.6 | 0.1 | -1.46 | 1.23 | 0.88 | 0.87 | 1.96 | 151803 | 5864 | 64 | 4920 | 310 | 0 | 0 | logfile |
✔ | 7LVK | 23539 | 2022-05-23 | 2021-02-25 | 2.2 | 2.31 | — | 2.4 | 0.009 | 0.93 | 8.0 | 0.06 | 14.61 | 0.02 | 1.324 | 2.50 | 0.81 | 5.1 | 94.8 | 0.2 | -2.34 | 0.64 | 0.86 | 5.37 | 2.4 | 0.006 | 0.72 | 0.0 | 0.04 | 15.08 | 0.01 | 0.971 | 5.80 | 2.00 | 4.7 | 95.2 | 0.1 | -0.37 | 0.97 | 0.67 | 0.88 | 5.15 | 151436 | 3222 | 63 | 3015 | 182 | 2716 | 58704 | logfile |
✔ | 5WE4 | 8814 | 2022-05-25 | 2017-07-07 | 3.1 | 3.04 | 3.02 | 3.0 | 0.008 | 1.16 | 3.0 | 0.10 | 17.51 | 0.02 | 1.575 | 3.80 | 3.52 | 9.8 | 87.9 | 2.3 | -4.03 | 0.78 | 0.81 | 2.62 | 3.0 | 0.009 | 0.94 | 0.0 | 0.05 | 17.15 | 0.01 | 0.977 | 12.76 | 0.99 | 9.2 | 90.2 | 0.6 | -2.13 | 3.97 | 0.83 | 0.82 | 2.48 | 155067 | 6324 | 117 | 4802 | 1620 | 996 | 0 | logfile |
✔ | 5GAD | 8000 | 2022-05-17 | 2015-11-24 | 3.7 | 4.17 | — | 3.9 | 0.009 | 1.11 | 1.0 | 0.05 | 15.93 | 0.01 | 1.737 | 9.28 | 10.34 | 3.5 | 96.5 | 0.1 | -3.19 | 0.77 | 0.79 | 1.52 | 3.9 | 0.007 | 0.67 | 0.0 | 0.03 | 15.21 | 0.01 | 0.987 | 18.22 | 0.58 | 3.8 | 96.1 | 0.1 | -0.19 | 1.60 | 0.81 | 0.88 | 1.37 | 98006 | 4087 | 49 | 3049 | 507 | 0 | 0 | logfile |
✔ | 6i0Y | 0322 | 2022-05-16 | 2018-10-26 | 3.2 | 4.80 | — | 4.7 | 0.010 | 1.49 | 8.0 | 0.07 | 15.55 | 0.01 | 0.682 | 13.08 | 11.41 | 16.0 | 77.5 | 6.5 | -5.00 | 0.59 | 0.58 | 0.26 | 4.7 | 0.005 | 0.83 | 0.0 | 0.04 | 16.07 | 0.01 | 0.990 | 21.89 | 1.57 | 13.8 | 84.2 | 2.0 | -2.85 | 1.60 | 0.59 | 0.70 | 0.58 | 93619 | 3551 | 48 | 3049 | 144 | 439 | 0 | logfile |
✔ | 5UYP | 8619 | 2022-05-24 | 2017-02-24 | 3.9 | 4.42 | 4.29 | 3.6 | 0.007 | 1.07 | 0.0 | 0.09 | 13.92 | 0.01 | 1.318 | 13.13 | 1.57 | 14.3 | 82.6 | 3.1 | -5.15 | 0.87 | 0.79 | 0.53 | 3.6 | 0.006 | 0.84 | 0.0 | 0.04 | 17.28 | 0.01 | 0.996 | 36.52 | 1.14 | 14.6 | 85.2 | 0.2 | -3.39 | 0.80 | 0.87 | 0.83 | 0.41 | 153780 | 6476 | 63 | 4811 | 1 | 0 | 0 | logfile |
✔ | 7NSH | 12567 | 2022-05-13 | 2021-03-07 | 3.2 | 3.39 | 3.12 | 3.3 | 0.003 | 0.53 | 0.0 | 0.05 | 15.69 | 0.00 | 1.187 | 7.82 | 0.02 | 4.2 | 95.8 | 0.1 | 0.71 | 0.80 | 0.84 | 2.70 | 3.3 | 0.004 | 0.69 | 0.0 | 0.04 | 17.05 | 0.01 | 0.999 | 10.50 | 0.25 | 5.0 | 94.9 | 0.0 | 0.45 | 1.20 | 0.79 | 0.89 | 2.66 | 112448 | 9643 | 79 | 1611 | 229 | 2 | 0 | logfile |
✔ | 6VQT | 21356 | 2022-05-13 | 2020-02-05 | 3.03 | 4.54 | 3.09 | 4.1 | 0.009 | 1.15 | 0.0 | 0.06 | 16.32 | 0.01 | 1.733 | 10.43 | 4.94 | 2.7 | 97.3 | 0.0 | 1.39 | 0.78 | 0.80 | 1.43 | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 16.44 | 0.00 | 0.999 | 9.77 | 0.43 | 2.9 | 97.1 | 0.0 | 2.46 | 1.06 | 0.77 | 0.84 | 1.36 | 9144 | 1168 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 5GAG | 8003 | 2022-05-16 | 2015-11-26 | 3.8 | 3.95 | — | 3.8 | 0.007 | 1.04 | 1.0 | 0.05 | 15.71 | 0.00 | 1.789 | 8.25 | 9.03 | 3.0 | 96.9 | 0.1 | -3.35 | 0.79 | 0.90 | 1.98 | 3.8 | 0.006 | 0.68 | 0.0 | 0.04 | 15.28 | 0.01 | 1.000 | 16.28 | 0.83 | 4.3 | 95.6 | 0.1 | -0.56 | 0.70 | 0.78 | 0.88 | 1.97 | 94030 | 3598 | 46 | 3049 | 473 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2022-05-12 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 20.86 | 0.01 | 0.865 | 18.52 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.005 | 0.76 | 0.0 | 0.04 | 16.86 | 0.01 | 1.006 | 33.78 | 0.00 | 8.7 | 90.8 | 0.5 | -1.87 | 2.17 | 0.87 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 6FTJ | 4317 | 2022-05-23 | 2018-02-22 | 4.7 | 4.88 | — | 4.7 | 0.011 | 1.39 | 18.0 | 0.10 | 19.94 | 0.01 | 0.475 | 12.17 | 11.77 | 9.8 | 87.8 | 2.4 | -4.05 | 0.63 | 0.62 | — | 4.7 | 0.005 | 0.85 | 0.0 | 0.04 | 18.31 | 0.01 | 1.011 | 33.68 | 0.03 | 9.7 | 89.9 | 0.5 | -1.97 | 1.12 | 0.67 | 0.71 | — | 152111 | 8263 | 73 | 3938 | 461 | 0 | 0 | logfile |
✔ | 5o5J | 3748 | 2022-05-18 | 2017-06-02 | 3.45 | 3.51 | — | 3.4 | 0.008 | 1.20 | 0.0 | 0.05 | 17.48 | 0.01 | 1.740 | 9.43 | 11.65 | 5.4 | 94.5 | 0.1 | -3.62 | 0.65 | 0.87 | 1.42 | 3.4 | 0.008 | 0.76 | 0.0 | 0.04 | 16.67 | 0.01 | 1.011 | 13.99 | 0.50 | 4.2 | 95.7 | 0.1 | 0.28 | 0.66 | 0.64 | 0.84 | 1.54 | 52163 | 2406 | 28 | 1536 | 219 | 0 | 0 | logfile |
✔ | 5o9G | 3765 | 2022-05-14 | 2017-06-19 | 4.8 | 5.07 | 4.71 | 10.4 | 0.003 | 0.48 | 0.0 | 0.03 | 22.47 | 0.00 | 2.194 | 7.47 | 0.36 | 9.1 | 90.8 | 0.1 | -4.25 | 0.51 | 0.13 | — | 4.8 | 0.003 | 0.71 | 0.0 | 0.04 | 23.98 | 0.00 | 1.014 | 17.73 | 0.00 | 5.5 | 94.4 | 0.1 | -1.08 | 2.79 | 0.83 | 0.69 | — | 19681 | 1610 | 11 | 324 | 2 | 0 | 0 | logfile |
✔ | 6GEN | 4396 | 2022-05-17 | 2018-04-27 | 3.6 | 4.67 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 20.46 | 0.01 | 2.109 | 5.91 | 8.77 | 3.9 | 96.0 | 0.0 | -4.51 | 0.78 | 0.58 | -0.18 | 4.4 | 0.003 | 0.76 | 0.0 | 0.04 | 21.34 | 0.00 | 1.014 | 16.32 | 0.38 | 4.7 | 95.3 | 0.0 | -0.45 | 2.07 | 0.84 | 0.74 | 0.08 | 44481 | 4683 | 29 | 346 | 151 | 0 | 0 | logfile |