Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5o5J	3748	2023-08-27	2017-06-02	3.45	3.51	—	3.4	0.008	1.20	0.0	0.05	17.48	0.01	1.740	9.43	11.65	5.4	94.5	0.1	-3.62	0.65	0.87	1.42	3.4	0.004	0.63	0.0	0.03	16.47	0.00	1.027	12.61	1.00	4.6	95.3	0.1	0.34	0.68	0.64	0.85	1.49	52163	2406	28	1536	219	0	0	logfile
✔	5XYM	6789	2023-08-21	2017-07-09	3.08	3.42	—	3.4	0.006	1.01	7.0	0.10	16.02	0.00	1.297	4.08	2.56	7.8	89.6	2.5	-3.59	0.66	0.78	3.19	3.4	0.007	0.76	0.0	0.04	15.77	0.01	1.033	7.69	0.91	8.7	90.1	1.2	-1.85	0.52	0.76	0.85	2.48	84069	3122	32	2781	146	0	0	logfile
✔	5GAD	8000	2023-08-24	2015-11-24	3.7	4.17	—	3.9	0.009	1.11	1.0	0.05	15.93	0.01	1.737	9.19	10.34	3.5	96.5	0.1	-3.19	0.77	0.79	1.52	3.9	0.008	0.70	0.0	0.04	15.17	0.01	1.037	20.35	0.82	4.2	95.7	0.1	-0.22	2.14	0.81	0.88	1.33	98006	4087	49	3049	507	0	0	logfile
✔	5GAF	8002	2023-08-23	2015-11-25	4.3	4.42	—	4.3	0.007	1.09	1.0	0.05	15.95	0.01	1.266	8.87	11.04	3.5	96.4	0.1	-3.28	0.63	0.64	—	4.3	0.005	0.71	0.0	0.04	14.99	0.01	1.044	21.32	0.03	5.4	94.5	0.2	-0.97	1.35	0.71	0.84	—	96182	3889	47	3049	452	0	0	logfile
✔	8E5L	27914	2023-08-16	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.68	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.002	0.65	0.0	0.04	12.02	0.00	1.046	16.48	0.00	2.4	97.6	0.0	0.49	1.33	0.89	0.83	—	20058	2502	13	9	18	0	0	logfile
✔	6VQT	21356	2023-08-11	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.32	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.1	0.003	0.74	0.0	0.04	16.60	0.00	1.052	9.77	0.32	3.0	97.0	0.0	2.30	1.06	0.77	0.84	1.48	9144	1168	4	0	6	0	0	logfile
✔	6i9R	4434	2023-08-25	2018-11-25	3.9	4.02	3.89	4.0	0.005	0.61	2.0	0.07	13.42	0.01	1.512	3.63	0.01	3.8	96.1	0.0	-3.40	0.79	0.81	1.34	3.9	0.008	0.78	1.0	0.04	16.34	0.01	1.053	16.23	0.94	4.9	95.1	0.0	-0.42	1.75	0.82	0.87	1.56	100274	8205	63	1562	139	0	0	logfile
✔	6ZXF	11519	2023-08-20	2020-07-29	3.7	3.68	3.69	3.5	0.010	0.98	0.0	0.05	16.80	0.01	1.937	8.48	0.65	8.5	91.5	0.0	-3.70	0.87	0.81	1.63	3.4	0.003	0.64	0.0	0.04	16.85	0.00	1.065	14.28	0.59	5.0	95.0	0.0	-0.99	0.58	0.87	0.82	1.32	80133	5758	41	1656	6	0	0	logfile
✔	8DST	27688	2023-08-09	2022-07-22	3.2	2.71	2.73	3.4	0.046	2.10	0.0	0.03	22.27	0.00	2.205	41.47	0.00	0.0	0.0	0.0	—	0.44	0.57	—	2.4	0.136	9.30	191.0	0.34	28.93	0.03	1.065	133.79	0.00	0.0	0.0	0.0	—	2.16	0.55	0.80	—	3078	0	54	0	270	0	0	logfile
✔	7T76	25735	2023-08-14	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	10.62	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.003	0.70	0.0	0.05	12.69	0.00	1.066	11.99	0.00	5.1	94.9	0.0	-0.35	1.89	0.81	0.81	—	16587	1934	42	0	104	0	0	logfile
✔	7o5H	12736	2023-08-22	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	12.30	0.00	1.262	5.88	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.66	0.0	0.04	14.74	0.01	1.068	13.97	0.56	3.6	96.4	0.0	0.01	1.48	0.87	0.85	1.32	34436	1730	22	964	167	0	0	logfile
✔	8HSJ	34999	2023-08-15	2022-12-19	3.6	4.38	3.44	3.4	0.004	0.80	0.0	0.05	14.73	0.01	1.788	16.52	4.93	3.7	96.0	0.3	-0.81	0.82	0.68	0.35	3.9	0.004	0.81	0.0	0.04	16.44	0.01	1.074	23.89	0.99	3.5	96.2	0.3	-0.24	1.32	0.85	0.73	0.36	17244	2166	12	0	18	0	0	logfile
✔	8EW3	28641	2023-08-12	2022-10-21	2.65159	3.20	2.63	3.0	0.003	0.45	0.0	0.04	10.09	0.00	2.260	2.58	0.16	1.7	98.3	0.0	1.12	0.78	0.90	4.36	3.0	0.003	0.57	0.0	0.04	13.31	0.00	1.077	6.08	0.56	1.8	98.2	0.0	1.38	1.18	0.75	0.89	3.39	11902	1540	9	0	5	0	0	logfile
✔	7BoE	12240	2023-08-27	2021-01-25	2.9	3.08	2.98	2.9	0.008	0.78	3.0	0.05	14.39	0.02	1.885	6.93	0.66	2.3	97.7	0.0	-1.12	0.77	0.78	2.22	2.9	0.007	0.75	0.0	0.04	15.83	0.01	1.079	15.30	2.62	3.6	96.4	0.1	-0.38	0.75	0.83	0.89	2.00	51969	2400	23	1534	153	0	0	logfile
✔	7TQD	26066	2023-08-10	2022-01-26	2.9	3.57	2.94	3.4	0.003	0.52	0.0	0.04	11.72	0.00	1.960	3.21	0.00	2.0	98.0	0.0	0.95	0.80	0.82	3.99	3.4	0.003	0.57	0.0	0.04	14.86	0.00	1.081	4.43	1.21	1.8	98.2	0.0	0.97	2.47	0.81	0.83	3.66	8690	1096	3	0	5	0	0	logfile
✔	8BPo	16155	2023-08-25	2022-11-17	2.8	2.66	2.77	2.8	0.004	0.85	0.0	0.04	15.76	0.01	1.912	3.73	0.03	3.4	96.6	0.0	-2.01	0.76	0.85	3.72	2.8	0.006	0.68	0.0	0.04	16.82	0.01	1.081	8.23	2.73	3.8	96.1	0.0	-0.20	0.94	0.79	0.90	3.64	143326	7606	64	3814	246	0	0	logfile
✔	7ZC6	14622	2023-08-12	2022-03-25	4.27	4.35	4.17	4.3	0.014	1.95	12.0	2.55	19.20	0.01	2.098	12.11	10.79	6.1	93.1	0.8	-1.59	0.66	0.74	—	4.3	0.020	3.91	0.0	0.76	14.97	0.00	1.087	12.35	0.00	4.2	95.8	0.0	-0.82	0.73	0.68	0.77	—	11428	1513	11	0	12	0	0	logfile
✔	7To3	26028	2023-08-13	2022-01-22	2.74	3.49	2.83	3.3	0.002	0.54	0.0	0.04	11.67	0.00	2.062	3.20	0.00	1.9	98.1	0.0	0.85	0.83	0.85	3.77	3.3	0.003	0.60	0.0	0.04	13.99	0.00	1.099	4.47	1.10	1.9	98.1	0.0	0.83	1.34	0.82	0.85	4.02	14764	1850	6	0	10	0	0	logfile
✔	6ZJL	11235	2023-08-23	2020-06-29	4.3	4.31	—	4.3	0.021	2.33	37.0	1.41	15.36	0.02	2.162	1.03	2.43	9.6	87.6	2.9	-4.76	0.55	0.77	—	4.3	0.012	2.30	0.0	0.44	14.33	0.01	1.099	15.58	0.08	5.6	94.1	0.2	-0.56	2.05	0.56	0.79	—	36057	4646	20	0	10	0	0	logfile
✔	7T23	25610	2023-08-17	2021-12-02	4.2	4.50	—	4.2	0.004	1.43	0.0	0.04	9.48	0.00	1.991	5.08	1.51	2.3	97.5	0.2	1.97	0.82	0.73	—	4.2	0.003	1.07	0.0	0.04	11.88	0.00	1.100	17.03	0.04	3.0	96.8	0.2	0.47	0.96	0.83	0.77	—	23507	2954	14	13	15	0	0	logfile

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