Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TA3	10421	2023-02-19	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.72	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.87	0.0	0.05	17.69	0.01	1.221	29.86	0.58	3.4	96.6	0.0	-0.26	2.45	0.78	0.74	0.35	9491	1201	6	0	5	0	0	logfile
✔	7oH5	12894	2023-02-20	2021-05-09	2.9	3.43	2.96	3.3	0.005	1.12	0.0	0.04	10.74	0.00	1.656	5.05	1.19	4.6	95.4	0.0	-4.15	0.65	0.75	3.22	3.4	0.003	0.84	0.0	0.04	14.59	0.00	1.227	7.77	1.59	4.4	95.5	0.1	-0.65	2.18	0.68	0.78	2.73	11603	1419	8	0	14	2	0	logfile
✔	5VZL	8749	2023-02-21	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.66	0.0	0.04	15.70	0.00	1.245	12.48	0.50	5.0	95.0	0.0	-1.31	1.26	0.38	0.19	0.61	13915	1451	3	115	1	0	0	logfile
✔	7X7N	33042	2023-02-25	2022-03-10	4.47	4.03	4.49	4.2	0.013	1.04	6.0	0.06	14.74	0.01	1.956	29.07	0.52	19.6	80.3	0.1	-5.63	0.73	0.77	—	4.1	0.004	0.78	6.0	0.05	14.24	0.00	1.262	15.16	0.00	10.0	90.0	0.0	-2.67	0.76	0.72	0.77	—	26493	3314	12	0	45	0	0	logfile
✔	8E5P	27917	2023-02-23	2022-08-22	4.4	9.89	6.01	8.2	0.003	0.64	0.0	0.04	11.32	0.00	1.299	26.66	1.63	1.3	98.4	0.3	-0.83	0.61	0.33	—	8.2	0.003	0.69	0.0	0.04	11.81	0.00	1.266	18.73	0.00	2.8	97.2	0.0	0.85	1.53	0.85	0.77	—	20038	2502	13	8	18	0	0	logfile
✔	7LYT	23601	2023-02-21	2021-03-08	2.9	2.52	2.91	3.0	0.009	0.55	0.0	0.04	18.78	0.03	2.087	7.16	0.33	0.0	100.0	0.0	-1.59	0.82	0.80	2.24	3.0	0.004	0.85	0.0	0.04	19.93	0.00	1.280	9.04	1.82	5.4	94.6	0.0	-0.15	1.22	0.83	0.82	3.02	14354	712	5	92	6	0	6722	logfile
✔	7LAR	23249	2023-02-22	2021-01-06	3.8	3.68	—	3.8	0.009	1.20	0.0	0.06	17.51	0.01	1.993	4.90	7.44	1.5	98.5	0.0	-2.56	0.62	0.81	2.85	3.8	0.003	0.68	0.0	0.04	16.33	0.00	1.298	9.23	0.52	8.5	91.5	0.0	-1.53	1.47	0.61	0.81	2.58	17714	1098	11	6	8	0	8697	logfile
✔	7LAS	23250	2023-02-22	2021-01-06	4.4	4.09	—	4.1	0.009	1.36	0.0	0.06	18.99	0.01	1.386	5.45	7.55	1.5	98.5	0.0	-2.56	0.60	0.75	—	4.1	0.003	0.71	0.0	0.04	16.31	0.00	1.299	12.60	0.10	7.1	92.9	0.0	-1.60	1.77	0.62	0.77	—	18011	1098	12	24	8	0	8624	logfile
✔	6Yo0	10862	2023-02-22	2020-04-14	2.9	3.37	2.94	3.1	0.009	0.75	0.0	0.04	9.57	0.00	1.889	11.21	0.27	3.7	96.3	0.0	-0.60	0.84	0.87	3.83	3.1	0.004	0.57	0.0	0.04	13.62	0.00	1.300	8.27	0.64	4.4	95.6	0.0	1.08	0.80	0.84	0.89	3.23	55780	3598	17	0	10	0	28102	logfile
✔	7LoK	23465	2023-02-21	2021-02-10	3.9	4.11	—	4.0	0.006	1.13	4.0	0.07	13.50	0.01	1.226	14.81	0.39	11.9	88.0	0.2	-5.60	0.76	0.77	2.26	4.0	0.003	0.72	3.0	0.04	15.11	0.00	1.315	9.07	0.23	6.5	93.4	0.1	-2.93	1.24	0.77	0.80	1.56	14498	1999	19	0	32	0	0	logfile
✔	6K32	9907	2023-02-23	2019-05-16	3.2	3.73	—	3.8	0.009	1.22	1.0	0.07	11.49	0.01	1.345	10.20	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.005	0.80	0.0	0.05	16.31	0.00	1.315	12.68	0.61	5.9	94.1	0.1	-1.36	1.63	0.31	0.82	2.34	61364	7723	10	8	6	0	0	logfile
✔	7NKU	12448	2023-02-25	2021-02-19	3.4	3.03	—	3.1	0.008	0.94	0.0	0.05	14.98	0.01	1.986	17.36	0.00	9.2	90.8	0.0	-0.63	0.74	0.77	1.90	3.1	0.004	0.81	0.0	0.04	17.70	0.01	1.318	17.14	0.56	7.3	92.7	0.0	-0.05	0.69	0.73	0.79	1.22	25332	3252	12	0	18	0	0	logfile
✔	6JT2	9885	2023-02-18	2019-04-08	3.8	3.88	—	3.8	0.004	0.74	0.0	0.04	11.14	0.01	1.980	10.08	3.54	4.0	95.7	0.3	-2.54	0.80	0.80	2.23	3.8	0.003	0.69	0.0	0.04	13.57	0.00	1.319	10.96	0.12	3.7	96.3	0.0	-0.17	1.66	0.82	0.81	1.64	8191	1075	4	0	4	0	0	logfile
✔	6W98	21580	2023-02-19	2020-03-22	2.9	3.47	2.92	3.3	0.010	0.86	0.0	0.05	12.85	0.01	1.990	2.57	0.00	4.4	95.6	0.1	-4.30	0.67	0.84	3.77	3.3	0.003	0.65	0.0	0.04	14.49	0.00	1.327	7.81	1.81	3.9	96.1	0.0	-0.06	0.49	0.67	0.85	3.05	10317	1389	3	0	4	1	0	logfile
✔	5MMJ	3532	2023-02-22	2016-12-10	3.6	3.88	—	3.6	0.008	1.15	0.0	0.05	16.66	0.01	1.774	10.61	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.005	0.71	0.0	0.04	16.28	0.01	1.334	19.31	1.26	5.4	94.4	0.1	-0.53	1.60	0.91	0.85	1.05	55315	2806	31	1484	359	0	0	logfile
✔	7LEZ	23295	2023-02-26	2021-01-15	4.15	2.14	4.23	3.9	0.007	1.20	0.0	0.06	10.28	0.01	1.255	11.69	0.91	10.1	89.2	0.7	-4.35	0.77	0.65	—	3.9	0.004	0.85	0.0	0.05	11.82	0.01	1.340	21.28	0.00	10.5	89.3	0.2	-2.00	1.82	0.78	0.66	—	27794	3654	20	0	12	0	0	logfile
✔	8ADG	15362	2023-02-24	2022-07-08	3.0	3.31	3.06	3.3	0.006	0.62	0.0	0.04	14.03	0.00	1.941	3.67	0.00	4.0	96.0	0.0	0.24	0.64	0.82	3.73	3.3	0.003	0.51	0.0	0.04	15.23	0.00	1.375	3.11	1.11	4.0	96.0	0.0	0.35	0.90	0.60	0.83	3.53	23183	1506	6	0	0	0	11375	logfile
✔	6YJ4	10815	2023-02-25	2020-04-02	2.7	2.35	2.73	2.6	0.011	1.10	0.0	0.65	14.92	0.01	2.031	2.88	0.03	4.1	95.8	0.0	-2.17	0.58	0.79	4.22	2.5	0.005	1.03	0.0	0.18	16.84	0.00	1.386	6.85	1.61	3.4	96.6	0.0	0.76	0.57	0.63	0.84	3.71	66311	8126	94	0	50	275	0	logfile
✔	7SLQ	25198	2023-02-17	2021-10-24	3.7	3.95	—	3.9	0.011	1.16	1.0	0.06	14.97	0.01	2.144	6.53	1.35	3.7	96.3	0.0	-2.83	0.74	0.70	2.35	3.9	0.002	0.58	0.0	0.04	16.03	0.01	1.388	8.68	0.22	5.1	94.9	0.0	0.17	1.30	0.75	0.72	1.87	5451	559	4	50	1	0	0	logfile
✔	6XH8	22185	2023-02-24	2020-06-18	4.1	4.25	—	3.9	0.012	1.12	0.0	0.06	14.73	0.01	2.006	9.71	0.27	13.7	86.2	0.1	-4.93	0.82	0.73	—	3.9	0.003	0.64	0.0	0.04	15.25	0.00	1.412	12.88	0.03	8.0	91.9	0.1	-2.13	1.27	0.81	0.74	—	65970	3951	14	110	5	0	32621	logfile

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