The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5o5J | 3748 | 2023-08-27 | 2017-06-02 | 3.45 | 3.51 | — | 3.4 | 0.008 | 1.20 | 0.0 | 0.05 | 17.48 | 0.01 | 1.740 | 9.43 | 11.65 | 5.4 | 94.5 | 0.1 | -3.62 | 0.65 | 0.87 | 1.42 | 3.4 | 0.004 | 0.63 | 0.0 | 0.03 | 16.47 | 0.00 | 1.027 | 12.61 | 1.00 | 4.6 | 95.3 | 0.1 | 0.34 | 0.68 | 0.64 | 0.85 | 1.49 | 52163 | 2406 | 28 | 1536 | 219 | 0 | 0 | logfile |
✔ | 5XYM | 6789 | 2023-08-21 | 2017-07-09 | 3.08 | 3.42 | — | 3.4 | 0.006 | 1.01 | 7.0 | 0.10 | 16.02 | 0.00 | 1.297 | 4.08 | 2.56 | 7.8 | 89.6 | 2.5 | -3.59 | 0.66 | 0.78 | 3.19 | 3.4 | 0.007 | 0.76 | 0.0 | 0.04 | 15.77 | 0.01 | 1.033 | 7.69 | 0.91 | 8.7 | 90.1 | 1.2 | -1.85 | 0.52 | 0.76 | 0.85 | 2.48 | 84069 | 3122 | 32 | 2781 | 146 | 0 | 0 | logfile |
✔ | 5GAD | 8000 | 2023-08-24 | 2015-11-24 | 3.7 | 4.17 | — | 3.9 | 0.009 | 1.11 | 1.0 | 0.05 | 15.93 | 0.01 | 1.737 | 9.19 | 10.34 | 3.5 | 96.5 | 0.1 | -3.19 | 0.77 | 0.79 | 1.52 | 3.9 | 0.008 | 0.70 | 0.0 | 0.04 | 15.17 | 0.01 | 1.037 | 20.35 | 0.82 | 4.2 | 95.7 | 0.1 | -0.22 | 2.14 | 0.81 | 0.88 | 1.33 | 98006 | 4087 | 49 | 3049 | 507 | 0 | 0 | logfile |
✔ | 5GAF | 8002 | 2023-08-23 | 2015-11-25 | 4.3 | 4.42 | — | 4.3 | 0.007 | 1.09 | 1.0 | 0.05 | 15.95 | 0.01 | 1.266 | 8.87 | 11.04 | 3.5 | 96.4 | 0.1 | -3.28 | 0.63 | 0.64 | — | 4.3 | 0.005 | 0.71 | 0.0 | 0.04 | 14.99 | 0.01 | 1.044 | 21.32 | 0.03 | 5.4 | 94.5 | 0.2 | -0.97 | 1.35 | 0.71 | 0.84 | — | 96182 | 3889 | 47 | 3049 | 452 | 0 | 0 | logfile |
✔ | 8E5L | 27914 | 2023-08-16 | 2022-08-22 | 4.2 | 8.91 | 5.82 | 7.6 | 0.003 | 0.64 | 0.0 | 0.04 | 11.68 | 0.00 | 1.299 | 26.62 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.63 | 0.37 | — | 7.5 | 0.002 | 0.65 | 0.0 | 0.04 | 12.02 | 0.00 | 1.046 | 16.48 | 0.00 | 2.4 | 97.6 | 0.0 | 0.49 | 1.33 | 0.89 | 0.83 | — | 20058 | 2502 | 13 | 9 | 18 | 0 | 0 | logfile |
✔ | 6VQT | 21356 | 2023-08-11 | 2020-02-05 | 3.03 | 4.54 | 3.09 | 4.1 | 0.009 | 1.15 | 0.0 | 0.06 | 16.32 | 0.01 | 1.733 | 10.32 | 4.94 | 2.7 | 97.3 | 0.0 | 1.39 | 0.78 | 0.80 | 1.43 | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 16.60 | 0.00 | 1.052 | 9.77 | 0.32 | 3.0 | 97.0 | 0.0 | 2.30 | 1.06 | 0.77 | 0.84 | 1.48 | 9144 | 1168 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6i9R | 4434 | 2023-08-25 | 2018-11-25 | 3.9 | 4.02 | 3.89 | 4.0 | 0.005 | 0.61 | 2.0 | 0.07 | 13.42 | 0.01 | 1.512 | 3.63 | 0.01 | 3.8 | 96.1 | 0.0 | -3.40 | 0.79 | 0.81 | 1.34 | 3.9 | 0.008 | 0.78 | 1.0 | 0.04 | 16.34 | 0.01 | 1.053 | 16.23 | 0.94 | 4.9 | 95.1 | 0.0 | -0.42 | 1.75 | 0.82 | 0.87 | 1.56 | 100274 | 8205 | 63 | 1562 | 139 | 0 | 0 | logfile |
✔ | 6ZXF | 11519 | 2023-08-20 | 2020-07-29 | 3.7 | 3.68 | 3.69 | 3.5 | 0.010 | 0.98 | 0.0 | 0.05 | 16.80 | 0.01 | 1.937 | 8.48 | 0.65 | 8.5 | 91.5 | 0.0 | -3.70 | 0.87 | 0.81 | 1.63 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.85 | 0.00 | 1.065 | 14.28 | 0.59 | 5.0 | 95.0 | 0.0 | -0.99 | 0.58 | 0.87 | 0.82 | 1.32 | 80133 | 5758 | 41 | 1656 | 6 | 0 | 0 | logfile |
✔ | 8DST | 27688 | 2023-08-09 | 2022-07-22 | 3.2 | 2.71 | 2.73 | 3.4 | 0.046 | 2.10 | 0.0 | 0.03 | 22.27 | 0.00 | 2.205 | 41.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.44 | 0.57 | — | 2.4 | 0.136 | 9.30 | 191.0 | 0.34 | 28.93 | 0.03 | 1.065 | 133.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.16 | 0.55 | 0.80 | — | 3078 | 0 | 54 | 0 | 270 | 0 | 0 | logfile |
✔ | 7T76 | 25735 | 2023-08-14 | 2021-12-14 | 4.43 | 4.68 | 4.39 | 4.5 | 0.022 | 1.97 | 2.0 | 0.14 | 10.62 | 0.02 | 0.530 | 1.29 | 0.77 | 3.4 | 96.4 | 0.3 | 0.31 | 0.81 | 0.80 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.05 | 12.69 | 0.00 | 1.066 | 11.99 | 0.00 | 5.1 | 94.9 | 0.0 | -0.35 | 1.89 | 0.81 | 0.81 | — | 16587 | 1934 | 42 | 0 | 104 | 0 | 0 | logfile |
✔ | 7o5H | 12736 | 2023-08-22 | 2021-04-08 | 3.1 | 2.93 | 3.04 | 2.8 | 0.002 | 0.33 | 0.0 | 0.03 | 12.30 | 0.00 | 1.262 | 5.88 | 0.98 | 2.1 | 97.9 | 0.0 | 1.09 | 0.86 | 0.83 | 1.84 | 2.8 | 0.006 | 0.66 | 0.0 | 0.04 | 14.74 | 0.01 | 1.068 | 13.97 | 0.56 | 3.6 | 96.4 | 0.0 | 0.01 | 1.48 | 0.87 | 0.85 | 1.32 | 34436 | 1730 | 22 | 964 | 167 | 0 | 0 | logfile |
✔ | 8HSJ | 34999 | 2023-08-15 | 2022-12-19 | 3.6 | 4.38 | 3.44 | 3.4 | 0.004 | 0.80 | 0.0 | 0.05 | 14.73 | 0.01 | 1.788 | 16.52 | 4.93 | 3.7 | 96.0 | 0.3 | -0.81 | 0.82 | 0.68 | 0.35 | 3.9 | 0.004 | 0.81 | 0.0 | 0.04 | 16.44 | 0.01 | 1.074 | 23.89 | 0.99 | 3.5 | 96.2 | 0.3 | -0.24 | 1.32 | 0.85 | 0.73 | 0.36 | 17244 | 2166 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 8EW3 | 28641 | 2023-08-12 | 2022-10-21 | 2.65159 | 3.20 | 2.63 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 10.09 | 0.00 | 2.260 | 2.58 | 0.16 | 1.7 | 98.3 | 0.0 | 1.12 | 0.78 | 0.90 | 4.36 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 13.31 | 0.00 | 1.077 | 6.08 | 0.56 | 1.8 | 98.2 | 0.0 | 1.38 | 1.18 | 0.75 | 0.89 | 3.39 | 11902 | 1540 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 7BoE | 12240 | 2023-08-27 | 2021-01-25 | 2.9 | 3.08 | 2.98 | 2.9 | 0.008 | 0.78 | 3.0 | 0.05 | 14.39 | 0.02 | 1.885 | 6.93 | 0.66 | 2.3 | 97.7 | 0.0 | -1.12 | 0.77 | 0.78 | 2.22 | 2.9 | 0.007 | 0.75 | 0.0 | 0.04 | 15.83 | 0.01 | 1.079 | 15.30 | 2.62 | 3.6 | 96.4 | 0.1 | -0.38 | 0.75 | 0.83 | 0.89 | 2.00 | 51969 | 2400 | 23 | 1534 | 153 | 0 | 0 | logfile |
✔ | 7TQD | 26066 | 2023-08-10 | 2022-01-26 | 2.9 | 3.57 | 2.94 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 11.72 | 0.00 | 1.960 | 3.21 | 0.00 | 2.0 | 98.0 | 0.0 | 0.95 | 0.80 | 0.82 | 3.99 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 14.86 | 0.00 | 1.081 | 4.43 | 1.21 | 1.8 | 98.2 | 0.0 | 0.97 | 2.47 | 0.81 | 0.83 | 3.66 | 8690 | 1096 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 8BPo | 16155 | 2023-08-25 | 2022-11-17 | 2.8 | 2.66 | 2.77 | 2.8 | 0.004 | 0.85 | 0.0 | 0.04 | 15.76 | 0.01 | 1.912 | 3.73 | 0.03 | 3.4 | 96.6 | 0.0 | -2.01 | 0.76 | 0.85 | 3.72 | 2.8 | 0.006 | 0.68 | 0.0 | 0.04 | 16.82 | 0.01 | 1.081 | 8.23 | 2.73 | 3.8 | 96.1 | 0.0 | -0.20 | 0.94 | 0.79 | 0.90 | 3.64 | 143326 | 7606 | 64 | 3814 | 246 | 0 | 0 | logfile |
✔ | 7ZC6 | 14622 | 2023-08-12 | 2022-03-25 | 4.27 | 4.35 | 4.17 | 4.3 | 0.014 | 1.95 | 12.0 | 2.55 | 19.20 | 0.01 | 2.098 | 12.11 | 10.79 | 6.1 | 93.1 | 0.8 | -1.59 | 0.66 | 0.74 | — | 4.3 | 0.020 | 3.91 | 0.0 | 0.76 | 14.97 | 0.00 | 1.087 | 12.35 | 0.00 | 4.2 | 95.8 | 0.0 | -0.82 | 0.73 | 0.68 | 0.77 | — | 11428 | 1513 | 11 | 0 | 12 | 0 | 0 | logfile |
✔ | 7To3 | 26028 | 2023-08-13 | 2022-01-22 | 2.74 | 3.49 | 2.83 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 11.67 | 0.00 | 2.062 | 3.20 | 0.00 | 1.9 | 98.1 | 0.0 | 0.85 | 0.83 | 0.85 | 3.77 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 13.99 | 0.00 | 1.099 | 4.47 | 1.10 | 1.9 | 98.1 | 0.0 | 0.83 | 1.34 | 0.82 | 0.85 | 4.02 | 14764 | 1850 | 6 | 0 | 10 | 0 | 0 | logfile |
✔ | 6ZJL | 11235 | 2023-08-23 | 2020-06-29 | 4.3 | 4.31 | — | 4.3 | 0.021 | 2.33 | 37.0 | 1.41 | 15.36 | 0.02 | 2.162 | 1.03 | 2.43 | 9.6 | 87.6 | 2.9 | -4.76 | 0.55 | 0.77 | — | 4.3 | 0.012 | 2.30 | 0.0 | 0.44 | 14.33 | 0.01 | 1.099 | 15.58 | 0.08 | 5.6 | 94.1 | 0.2 | -0.56 | 2.05 | 0.56 | 0.79 | — | 36057 | 4646 | 20 | 0 | 10 | 0 | 0 | logfile |
✔ | 7T23 | 25610 | 2023-08-17 | 2021-12-02 | 4.2 | 4.50 | — | 4.2 | 0.004 | 1.43 | 0.0 | 0.04 | 9.48 | 0.00 | 1.991 | 5.08 | 1.51 | 2.3 | 97.5 | 0.2 | 1.97 | 0.82 | 0.73 | — | 4.2 | 0.003 | 1.07 | 0.0 | 0.04 | 11.88 | 0.00 | 1.100 | 17.03 | 0.04 | 3.0 | 96.8 | 0.2 | 0.47 | 0.96 | 0.83 | 0.77 | — | 23507 | 2954 | 14 | 13 | 15 | 0 | 0 | logfile |