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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GEJ | 4395 | 2024-03-24 | 2018-04-26 | 3.6 | 3.77 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 18.74 | 0.00 | 1.491 | 9.10 | 3.93 | 4.6 | 95.4 | 0.0 | -2.70 | 0.82 | 0.77 | 0.98 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 20.57 | 0.00 | 0.988 | 10.08 | 3.41 | 4.0 | 96.0 | 0.0 | 0.18 | 0.79 | 0.83 | 0.79 | 0.99 | 43702 | 4683 | 29 | 308 | 151 | 0 | 0 | logfile |
✔ | 6T59 | 10380 | 2024-03-20 | 2019-10-15 | 3.11 | 3.19 | 3.02 | 7.3 | 0.011 | 0.83 | 0.0 | 0.05 | 23.92 | 0.00 | 1.148 | 10.80 | 0.76 | 8.9 | 91.0 | 0.1 | -5.04 | 0.22 | 0.01 | 0.07 | 3.1 | 0.004 | 0.83 | 0.0 | 0.04 | 24.85 | 0.01 | 0.989 | 23.83 | 2.09 | 8.7 | 91.2 | 0.0 | -2.39 | 2.10 | 0.60 | 0.60 | 0.68 | 143047 | 7383 | 64 | 3890 | 225 | 0 | 0 | logfile |
✔ | 6FYY | 4328 | 2024-03-21 | 2018-03-12 | 3.02 | 3.15 | 3.09 | 3.1 | 0.008 | 1.34 | 57.0 | 0.11 | 24.45 | 0.02 | 0.817 | 7.39 | 10.74 | 8.2 | 89.1 | 2.7 | -1.95 | 0.63 | 0.83 | 1.68 | 3.1 | 0.006 | 0.81 | 0.0 | 0.04 | 23.32 | 0.01 | 0.994 | 15.15 | 5.66 | 7.3 | 92.0 | 0.7 | -0.35 | 1.41 | 0.66 | 0.84 | 1.73 | 104316 | 8066 | 54 | 1886 | 200 | 0 | 0 | logfile |
✔ | 6VQT | 21356 | 2024-03-14 | 2020-02-05 | 3.03 | 4.54 | 3.09 | 4.1 | 0.009 | 1.15 | 0.0 | 0.06 | 16.32 | 0.01 | 1.733 | 10.32 | 4.94 | 2.7 | 97.3 | 0.0 | 1.39 | 0.78 | 0.80 | 1.43 | 4.1 | 0.005 | 0.77 | 0.0 | 0.04 | 16.77 | 0.00 | 0.997 | 10.37 | 3.76 | 3.4 | 96.6 | 0.0 | 2.33 | 1.05 | 0.77 | 0.85 | 1.33 | 9144 | 1168 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7AC7 | 11713 | 2024-03-02 | 2020-09-10 | 3.08 | 3.25 | 3.06 | 3.1 | 0.003 | 0.56 | 5.0 | 0.03 | 23.02 | 0.02 | 1.183 | 10.07 | 0.66 | 3.1 | 96.7 | 0.2 | -0.42 | 0.80 | 0.83 | 2.85 | 3.1 | 0.006 | 0.67 | 0.0 | 0.04 | 23.10 | 0.01 | 0.998 | 8.72 | 3.99 | 4.0 | 95.9 | 0.1 | -0.18 | 0.58 | 0.84 | 0.90 | 2.70 | 154883 | 5975 | 71 | 5017 | 443 | 0 | 0 | logfile |
✔ | 6YSU | 10908 | 2024-03-23 | 2020-04-23 | 3.7 | 3.89 | 3.60 | 3.7 | 0.007 | 0.79 | 2.0 | 0.04 | 24.26 | 0.02 | 1.368 | 20.57 | 0.17 | 12.1 | 87.7 | 0.2 | -4.65 | 0.83 | 0.87 | 1.85 | 3.7 | 0.006 | 0.76 | 0.0 | 0.04 | 23.94 | 0.01 | 1.000 | 19.74 | 5.44 | 10.7 | 89.2 | 0.1 | -2.13 | 0.40 | 0.83 | 0.87 | 1.63 | 146399 | 6030 | 69 | 4645 | 358 | 0 | 0 | logfile |
✔ | 7LVK | 23539 | 2024-03-27 | 2021-02-25 | 2.2 | 2.31 | — | 2.4 | 0.009 | 0.92 | 8.0 | 0.06 | 23.30 | 0.02 | 1.324 | 2.41 | 0.81 | 5.1 | 94.8 | 0.2 | -2.34 | 0.64 | 0.86 | 5.37 | 2.4 | 0.004 | 0.66 | 0.0 | 0.04 | 23.38 | 0.01 | 1.004 | 5.80 | 2.34 | 4.8 | 95.1 | 0.1 | -0.29 | 0.96 | 0.67 | 0.88 | 5.08 | 151436 | 3222 | 63 | 3016 | 181 | 2716 | 58704 | logfile |
✔ | 6ZXF | 11519 | 2024-03-17 | 2020-07-29 | 3.7 | 3.68 | 3.69 | 3.5 | 0.010 | 0.98 | 0.0 | 0.05 | 22.23 | 0.01 | 1.937 | 8.48 | 0.65 | 8.5 | 91.5 | 0.0 | -3.70 | 0.87 | 0.81 | 1.63 | 3.4 | 0.004 | 0.68 | 0.0 | 0.04 | 22.24 | 0.00 | 1.004 | 16.01 | 4.32 | 6.1 | 93.9 | 0.0 | -1.19 | 0.56 | 0.88 | 0.82 | 1.40 | 80133 | 5758 | 41 | 1656 | 6 | 0 | 0 | logfile |
✔ | 5GAG | 8003 | 2024-03-19 | 2015-11-26 | 3.8 | 3.95 | — | 3.8 | 0.007 | 1.04 | 1.0 | 0.05 | 23.62 | 0.00 | 1.789 | 8.16 | 9.03 | 3.0 | 96.9 | 0.1 | -3.35 | 0.79 | 0.90 | 1.98 | 3.8 | 0.005 | 0.64 | 0.0 | 0.04 | 23.09 | 0.00 | 1.005 | 15.18 | 5.48 | 4.1 | 95.8 | 0.1 | -0.62 | 0.65 | 0.78 | 0.88 | 1.93 | 94030 | 3598 | 46 | 3049 | 473 | 0 | 0 | logfile |
✔ | 5T62 | 8362 | 2024-03-16 | 2016-09-01 | 3.3 | 3.38 | — | 3.4 | 0.007 | 1.13 | 5.0 | 0.09 | 22.91 | 0.01 | 1.390 | 1.88 | 6.32 | 8.1 | 89.7 | 2.2 | -4.03 | 0.68 | 0.78 | 3.21 | 3.3 | 0.008 | 0.80 | 0.0 | 0.05 | 22.26 | 0.01 | 1.006 | 5.56 | 4.30 | 7.5 | 91.8 | 0.6 | -1.68 | 0.68 | 0.81 | 0.87 | 2.67 | 131766 | 7061 | 57 | 3483 | 438 | 6 | 0 | logfile |
✔ | 8SHN | 40489 | 2024-03-13 | 2023-04-14 | 2.8 | 3.49 | 2.91 | 3.2 | 0.004 | 0.53 | 0.0 | 0.04 | 13.80 | 0.00 | 1.936 | 7.01 | 0.00 | 3.0 | 97.0 | 0.0 | 1.72 | 0.86 | 0.89 | 2.67 | 3.3 | 0.005 | 0.60 | 0.0 | 0.04 | 15.06 | 0.00 | 1.012 | 7.23 | 0.70 | 3.6 | 96.4 | 0.0 | 1.37 | 0.26 | 0.83 | 0.87 | 2.57 | 66003 | 8578 | 49 | 0 | 48 | 19 | 0 | logfile |
✔ | 7T23 | 25610 | 2024-03-19 | 2021-12-02 | 4.2 | 4.50 | — | 4.2 | 0.004 | 1.43 | 0.0 | 0.04 | 9.48 | 0.00 | 1.991 | 5.08 | 1.51 | 2.3 | 97.5 | 0.2 | 1.97 | 0.82 | 0.73 | — | 4.2 | 0.004 | 1.10 | 0.0 | 0.04 | 12.10 | 0.00 | 1.015 | 22.28 | 0.00 | 4.3 | 95.5 | 0.2 | 0.06 | 0.97 | 0.84 | 0.78 | — | 23507 | 2954 | 14 | 13 | 15 | 0 | 0 | logfile |
✔ | 8H77 | 34519 | 2024-03-16 | 2022-10-19 | 3.2 | 2.74 | 3.17 | 3.1 | 0.005 | 0.84 | 0.0 | 0.05 | 15.36 | 0.00 | 1.365 | 13.60 | 0.12 | 5.1 | 94.9 | 0.0 | -1.57 | 0.59 | 0.67 | 2.51 | 3.1 | 0.003 | 0.62 | 0.0 | 0.04 | 17.52 | 0.00 | 1.017 | 9.81 | 2.37 | 3.7 | 96.3 | 0.0 | -0.56 | 0.65 | 0.69 | 0.76 | 2.18 | 15726 | 1930 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 8SHA | 40482 | 2024-03-14 | 2023-04-13 | 3.0 | 3.49 | 3.11 | 3.3 | 0.006 | 0.60 | 0.0 | 0.04 | 14.84 | 0.00 | 1.897 | 7.05 | 0.00 | 4.1 | 95.9 | 0.0 | 1.34 | 0.84 | 0.89 | 2.68 | 3.3 | 0.006 | 0.67 | 1.0 | 0.04 | 15.93 | 0.00 | 1.021 | 7.86 | 1.02 | 4.0 | 96.0 | 0.0 | 0.94 | 0.24 | 0.83 | 0.89 | 2.54 | 67155 | 8717 | 50 | 0 | 48 | 19 | 0 | logfile |
✔ | 5WE4 | 8814 | 2024-03-02 | 2017-07-07 | 3.1 | 3.04 | 3.02 | 3.0 | 0.008 | 1.14 | 3.0 | 0.10 | 24.21 | 0.02 | 1.575 | 3.75 | 3.52 | 9.8 | 87.9 | 2.3 | -4.03 | 0.78 | 0.81 | 2.62 | 3.0 | 0.005 | 0.78 | 0.0 | 0.04 | 23.77 | 0.01 | 1.021 | 11.61 | 5.67 | 8.3 | 91.2 | 0.5 | -1.85 | 3.97 | 0.84 | 0.83 | 2.36 | 155067 | 6324 | 117 | 4802 | 1620 | 996 | 0 | logfile |
✔ | 7SA4 | 24944 | 2024-03-26 | 2021-09-22 | 2.55 | 2.59 | — | 2.5 | 0.011 | 0.85 | 1.0 | 0.07 | 23.37 | 0.02 | 1.125 | 11.36 | 0.06 | 3.6 | 96.3 | 0.0 | -0.37 | 0.76 | 0.90 | 4.18 | 2.5 | 0.006 | 0.68 | 0.0 | 0.04 | 23.43 | 0.01 | 1.022 | 10.34 | 3.35 | 3.5 | 96.5 | 0.0 | 0.33 | 1.51 | 0.75 | 0.90 | 3.62 | 150065 | 6175 | 71 | 4724 | 441 | 2 | 0 | logfile |
✔ | 7NWW | 12636 | 2024-03-22 | 2021-03-17 | 3.05 | 3.83 | 3.02 | 2.9 | 0.010 | 0.97 | 0.0 | 0.06 | 22.83 | 0.02 | 1.667 | 7.33 | 0.49 | 3.6 | 96.3 | 0.2 | -3.85 | 0.89 | 0.86 | 3.17 | 3.0 | 0.006 | 0.74 | 0.0 | 0.04 | 22.90 | 0.01 | 1.023 | 14.47 | 2.90 | 3.9 | 96.1 | 0.0 | -0.13 | 2.45 | 0.92 | 0.91 | 2.72 | 145149 | 5738 | 67 | 4651 | 415 | 0 | 0 | logfile |
✔ | 7Y41 | 33599 | 2024-03-20 | 2022-06-13 | 4.1 | 4.02 | 3.07 | 3.4 | 0.004 | 0.63 | 0.0 | 0.03 | 24.41 | 0.01 | 1.204 | 15.20 | 0.00 | 4.4 | 95.6 | 0.0 | -0.39 | 0.87 | 0.86 | — | 3.4 | 0.005 | 0.63 | 0.0 | 0.04 | 23.73 | 0.00 | 1.023 | 14.66 | 0.04 | 4.8 | 95.2 | 0.0 | -0.45 | 1.47 | 0.88 | 0.87 | — | 97056 | 3529 | 46 | 3237 | 411 | 0 | 0 | logfile |
✔ | 7U0i | 26260 | 2024-03-17 | 2022-02-18 | 2.6 | 3.16 | — | 3.0 | 0.012 | 0.86 | 10.0 | 0.05 | 26.82 | 0.01 | 2.074 | 14.30 | 1.56 | 3.9 | 96.0 | 0.1 | 0.00 | 0.85 | 0.87 | 3.19 | 2.9 | 0.008 | 0.69 | 1.0 | 0.03 | 27.23 | 0.01 | 1.027 | 22.17 | 3.20 | 5.1 | 94.9 | 0.0 | 1.34 | 0.33 | 0.81 | 0.86 | 3.40 | 18108 | 1368 | 14 | 298 | 0 | 0 | 1220 | logfile |
✔ | 5GAD | 8000 | 2024-03-20 | 2015-11-24 | 3.7 | 4.17 | — | 3.9 | 0.009 | 1.11 | 1.0 | 0.05 | 23.56 | 0.01 | 1.737 | 9.19 | 10.34 | 3.5 | 96.5 | 0.1 | -3.19 | 0.77 | 0.79 | 1.52 | 3.9 | 0.007 | 0.69 | 0.0 | 0.04 | 22.83 | 0.00 | 1.027 | 19.32 | 4.12 | 4.0 | 95.9 | 0.1 | -0.26 | 1.60 | 0.81 | 0.88 | 1.51 | 98006 | 4087 | 49 | 3049 | 507 | 0 | 0 | logfile |