Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LQi	23487	2021-12-01	2021-02-13	3.5	3.92	—	3.9	0.008	0.80	0.0	0.05	18.09	0.00	1.411	22.72	5.00	0.0	100.0	0.0	-3.42	0.62	0.79	4.80	3.8	0.051	3.56	11.0	0.15	22.77	0.01	1.796	118.79	3.83	51.0	48.5	0.5	-7.98	1.62	0.65	0.84	2.40	8500	800	100	0	0	0	0	logfile
✔	5LMN	4073	2021-12-01	2016-08-01	3.55	3.68	3.61	3.6	0.007	1.42	35.0	0.12	20.67	0.01	0.925	19.84	21.59	10.4	86.7	2.8	-2.30	0.79	0.88	1.35	3.6	0.007	0.80	0.0	0.04	17.32	0.01	1.796	22.04	1.28	8.4	91.4	0.2	-1.28	1.55	0.77	0.84	1.43	54149	2623	27	1534	129	0	0	logfile
✔	6Yo0	10862	2021-12-01	2020-04-14	2.9	3.37	2.94	3.1	0.009	0.75	0.0	0.04	9.57	0.00	1.889	11.21	0.27	3.7	96.3	0.0	-0.60	0.84	0.87	3.83	3.1	0.003	0.56	0.0	0.04	13.60	0.00	1.797	7.97	0.77	4.2	95.8	0.0	1.17	0.79	0.84	0.88	3.21	55780	3598	17	0	10	0	28102	logfile
✔	7D6V	30594	2021-12-01	2020-10-02	2.53	2.74	—	2.7	0.031	1.56	2.0	0.50	14.77	0.01	2.186	9.51	0.00	9.6	90.3	0.1	-0.92	0.76	0.88	4.90	2.7	0.013	1.22	1.0	0.06	16.25	0.01	1.800	7.67	1.55	7.9	92.0	0.1	-0.22	0.33	0.72	0.89	4.03	8793	1104	6	0	7	0	0	logfile
✔	6PQX	20455	2021-12-01	2019-07-10	4.6	4.84	—	4.7	0.006	0.99	0.0	0.06	23.23	0.01	2.222	15.96	2.35	5.2	94.1	0.6	-3.41	0.78	0.79	—	4.7	0.004	0.71	0.0	0.04	22.99	0.01	1.801	18.20	0.00	7.4	92.4	0.2	-1.80	0.73	0.78	0.77	—	10116	960	10	120	4	0	0	logfile
✔	6XMS	22262	2021-12-01	2020-06-30	3.4	4.03	3.50	3.8	0.006	0.66	0.0	0.04	12.68	0.00	1.862	6.08	0.00	4.6	95.4	0.0	-2.39	0.74	0.87	2.45	3.8	0.005	0.61	0.0	0.04	14.26	0.00	1.810	5.72	0.00	4.7	95.3	0.0	0.08	0.36	0.74	0.89	1.99	8389	1091	1	0	2	0	0	logfile
✔	7N72	24217	2021-12-01	2021-06-09	2.5	3.08	2.57	2.9	0.007	0.87	0.0	0.06	13.12	0.01	1.971	6.06	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.004	0.61	0.0	0.04	14.47	0.01	1.812	5.79	1.07	2.4	97.6	0.0	1.61	0.42	0.66	0.82	2.83	7705	1030	1	0	11	5	0	logfile
✔	5LMQ	4076	2021-12-01	2016-08-01	4.2	4.46	4.25	4.2	0.009	1.44	30.0	0.12	20.82	0.01	1.387	19.42	21.46	10.5	86.1	3.4	-2.56	0.80	0.76	—	4.2	0.005	0.76	0.0	0.04	16.78	0.01	1.816	30.88	0.05	9.1	90.4	0.5	-1.39	1.62	0.84	0.85	—	55841	2635	29	1612	66	0	0	logfile
✔	6ZoN	11325	2021-12-01	2020-07-07	3.0	3.06	—	2.7	0.010	1.05	0.0	0.06	16.88	0.01	2.199	7.74	0.53	6.3	93.7	0.0	-4.42	0.80	0.72	2.34	2.7	0.008	0.83	0.0	0.04	17.22	0.01	1.819	17.35	2.17	5.9	94.1	0.0	-1.53	0.47	0.77	0.69	1.92	109201	9169	51	1721	183	0	0	logfile
✔	5LMT	4079	2021-12-01	2016-08-01	4.15	4.33	4.20	4.2	0.008	1.43	21.0	0.12	20.74	0.01	1.290	18.77	22.35	11.9	84.8	3.3	-2.73	0.77	0.76	—	4.1	0.006	0.82	0.0	0.04	16.60	0.01	1.824	28.21	0.00	8.9	90.8	0.3	-1.60	0.89	0.80	0.83	—	55776	2622	31	1612	88	0	0	logfile
✔	7KNQ	22954	2021-12-01	2020-11-05	3.4	3.78	—	3.7	0.009	0.92	0.0	0.05	14.56	0.01	2.083	19.48	0.38	11.0	89.0	0.0	-2.88	0.73	0.76	2.09	3.7	0.005	0.86	0.0	0.04	16.05	0.01	1.831	13.30	0.35	5.8	94.2	0.1	-1.05	1.23	0.52	0.38	0.83	37066	4704	8	0	0	0	0	logfile
✔	6RDL	4822	2021-12-01	2019-04-12	3.7	3.82	3.81	3.8	0.006	0.91	0.0	0.06	14.09	0.01	2.103	6.37	0.44	4.9	94.9	0.2	-4.35	0.65	0.77	1.54	3.8	0.009	0.92	2.0	0.04	16.24	0.01	1.832	16.51	0.18	5.3	94.5	0.2	-1.13	1.25	0.67	0.81	1.14	53748	7103	37	0	11	0	0	logfile
✔	7P5M	13201	2021-12-01	2021-07-14	3.92	3.54	3.67	3.7	0.003	0.55	0.0	0.04	14.29	0.00	2.209	8.88	0.00	0.9	99.1	0.0	3.52	0.51	0.77	1.01	3.7	0.016	1.49	1.0	0.04	17.09	0.01	1.835	13.48	0.46	0.9	99.1	0.0	3.87	0.43	0.54	0.77	0.92	6204	788	8	0	12	0	0	logfile
✔	6WJ3	21687	2021-12-01	2020-04-11	3.9	4.46	4.05	4.2	0.009	0.50	0.0	0.04	12.83	0.00	2.210	8.22	0.00	4.7	95.2	0.1	-2.80	0.85	0.76	0.95	4.2	0.009	1.04	0.0	0.04	15.41	0.01	1.836	15.75	0.11	6.0	94.0	0.0	-0.67	1.72	0.86	0.78	1.14	8912	1168	10	1	1	0	0	logfile
✔	6RDQ	4827	2021-12-01	2019-04-12	4.0	3.99	—	3.9	0.007	0.94	0.0	0.05	14.97	0.01	1.908	6.99	0.44	5.2	94.6	0.2	-4.22	0.72	0.79	—	3.9	0.008	0.91	2.0	0.04	16.64	0.00	1.836	14.84	0.11	4.5	95.3	0.1	-0.90	0.59	0.72	0.81	—	53748	7103	37	0	11	0	0	logfile
✔	6RE8	4845	2021-12-01	2019-04-12	3.8	3.75	—	3.8	0.006	0.86	0.0	0.05	14.58	0.01	1.985	5.76	0.21	4.3	95.5	0.2	-4.12	0.67	0.81	1.73	3.7	0.007	0.80	1.0	0.04	16.24	0.00	1.842	11.92	0.50	4.3	95.6	0.1	-0.26	1.21	0.67	0.82	1.34	53720	7099	37	0	11	0	0	logfile
✔	7F63	31471	2021-12-01	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.45	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.020	1.84	1.0	0.05	16.36	0.01	1.844	26.56	0.27	11.6	87.9	0.5	-2.59	1.42	0.65	0.70	1.42	3375	429	3	0	0	0	0	logfile
✔	5H1C	9567	2021-12-01	2016-10-08	4.5	4.34	—	3.8	0.008	1.19	0.0	0.05	15.32	0.00	1.454	41.46	4.44	4.9	92.8	2.3	-2.37	0.52	0.66	—	3.8	0.004	0.67	0.0	0.04	15.24	0.00	1.851	12.78	0.00	4.8	94.2	1.0	0.82	0.78	0.59	0.83	—	7602	933	8	18	6	0	0	logfile
✔	6RDi	4819	2021-12-01	2019-04-12	3.2	3.30	3.21	3.2	0.010	1.01	1.0	0.06	14.11	0.01	2.025	5.61	0.34	5.0	94.8	0.2	-3.87	0.68	0.82	2.66	3.3	0.007	0.81	1.0	0.04	15.77	0.01	1.855	10.94	0.21	4.7	95.2	0.2	-0.19	1.62	0.71	0.85	2.20	53748	7103	37	0	11	0	0	logfile
✔	6X66	22071	2021-12-01	2020-05-27	4.2	6.75	—	8.4	0.016	1.73	27.0	0.08	14.04	0.01	2.162	21.73	0.38	12.3	87.7	0.0	-3.77	0.72	0.45	—	4.2	0.005	0.80	1.0	0.05	12.69	0.00	1.857	24.41	0.00	8.0	92.0	0.0	-2.10	2.52	0.78	0.69	—	109070	15548	117	0	0	0	0	logfile

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