Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KTP	23025	2022-12-12	2020-11-24	4.8	4.79	—	4.6	0.005	0.73	0.0	0.05	11.99	0.00	2.221	2.32	0.00	4.5	95.5	0.0	-4.13	0.71	0.69	—	4.6	0.003	0.67	0.0	0.04	12.94	0.00	1.227	15.05	0.00	4.7	95.3	0.0	-0.99	2.61	0.75	0.77	—	12008	1544	5	0	7	0	0	logfile
✔	6U8Q	20689	2022-12-14	2019-09-05	4.67	4.92	—	4.6	0.021	0.88	0.0	0.05	18.69	0.01	1.972	7.41	4.07	3.8	96.1	0.2	-3.92	0.76	0.63	—	4.6	0.003	0.67	0.0	0.04	18.03	0.00	1.231	15.09	0.00	3.7	96.3	0.0	-1.00	1.07	0.79	0.71	—	21129	2442	18	96	6	0	0	logfile
✔	7oH5	12894	2022-12-12	2021-05-09	2.9	3.43	2.96	3.3	0.005	1.14	0.0	0.04	10.39	0.00	1.656	5.09	1.19	4.6	95.4	0.0	-4.15	0.65	0.75	3.22	3.4	0.003	0.83	0.0	0.04	14.69	0.00	1.231	7.42	1.91	4.2	95.7	0.1	-0.67	2.18	0.68	0.78	2.61	11603	1419	8	0	14	2	0	logfile
✔	7FEP	31559	2022-12-20	2021-07-21	3.1	3.61	—	3.5	0.015	1.26	0.0	0.11	14.37	0.00	2.396	4.95	2.53	9.6	89.9	0.5	-5.30	0.47	0.64	3.66	3.5	0.005	1.45	13.0	0.25	16.18	0.00	1.233	8.00	0.09	9.0	90.4	0.5	-1.87	1.30	0.71	0.85	3.48	40381	2730	28	0	14	0	19353	logfile
✔	8E5P	27917	2022-12-14	2022-08-22	4.4	9.89	6.01	8.2	0.003	0.64	0.0	0.04	11.32	0.00	1.299	26.66	1.63	1.3	98.4	0.3	-0.83	0.61	0.33	—	8.2	0.003	0.70	0.0	0.04	11.72	0.00	1.238	20.66	0.00	3.3	96.7	0.0	0.78	1.54	0.85	0.77	—	20038	2502	13	8	18	0	0	logfile
✔	5VZL	8749	2022-12-13	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.76	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.003	0.68	0.0	0.04	15.78	0.00	1.238	14.34	0.50	5.8	94.2	0.0	-1.59	1.27	0.39	0.19	0.68	13915	1451	3	115	1	0	0	logfile
✔	7AK5	11810	2022-12-13	2020-09-29	3.17	2.97	3.17	3.1	0.005	0.73	0.0	1.04	15.11	0.00	1.865	8.32	0.01	5.9	94.0	0.0	-3.68	0.66	0.82	3.16	3.1	0.009	1.61	0.0	0.31	16.53	0.00	1.243	9.30	0.30	4.3	95.7	0.0	0.38	1.48	0.68	0.86	2.64	65895	8069	64	0	28	0	0	logfile
✔	6X5i	22051	2022-12-11	2020-05-26	4.3	4.27	—	4.0	0.060	2.85	210.0	0.16	31.34	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.010	1.52	210.0	0.14	25.91	0.00	1.249	62.11	0.00	0.0	0.0	0.0	—	3.32	0.68	0.73	—	4480	70	70	0	280	0	0	logfile
✔	7X7N	33042	2022-12-15	2022-03-10	4.47	4.03	4.49	4.2	0.013	1.04	6.0	0.06	14.74	0.01	1.956	29.19	0.52	19.6	80.3	0.1	-5.63	0.73	0.77	—	4.1	0.004	0.74	6.0	0.05	14.22	0.00	1.263	13.86	0.00	9.2	90.8	0.0	-2.59	0.76	0.72	0.77	—	26493	3314	12	0	45	0	0	logfile
✔	7LYT	23601	2022-12-13	2021-03-08	2.9	2.52	2.91	3.0	0.014	0.55	0.0	0.04	18.87	0.03	2.087	7.23	0.33	0.0	100.0	0.0	-1.59	0.82	0.80	2.24	3.0	0.004	0.84	0.0	0.04	19.82	0.00	1.265	8.55	1.65	5.6	94.4	0.0	0.02	1.22	0.83	0.82	3.02	14354	712	5	92	6	0	6722	logfile
✔	6QCT	4512	2022-12-14	2018-12-30	3.2	3.59	—	3.2	0.008	0.77	0.0	0.05	14.84	0.01	2.075	4.30	5.87	5.0	95.0	0.0	-3.92	0.90	0.84	3.03	3.2	0.005	0.62	0.0	0.04	15.48	0.00	1.265	8.69	0.37	3.9	96.1	0.0	-0.18	1.96	0.92	0.89	2.69	18266	2186	8	38	3	0	0	logfile
✔	6ZLQ	11272	2022-12-18	2020-07-01	3.3	3.41	—	3.3	0.009	0.74	0.0	0.04	17.49	0.00	0.983	16.27	8.48	3.6	96.4	0.0	-3.01	0.81	0.83	1.76	3.3	0.003	0.60	0.0	0.03	18.12	0.00	1.273	15.03	0.85	0.9	99.1	0.0	3.36	0.70	0.80	0.84	1.08	33823	4185	38	0	16	0	0	logfile
✔	6RH3	4882	2022-12-15	2019-04-18	3.6	3.97	—	3.9	0.013	1.04	0.0	0.06	12.34	0.01	1.044	13.66	0.11	13.4	86.4	0.3	-4.23	0.79	0.85	2.97	3.9	0.003	0.63	0.0	0.04	16.02	0.00	1.278	9.78	0.26	6.2	93.7	0.0	-0.68	1.34	0.78	0.84	1.58	26300	3207	9	58	4	0	0	logfile
✔	5o9G	3765	2022-12-14	2017-06-19	4.8	5.07	4.71	10.4	0.003	0.48	0.0	0.03	22.47	0.00	2.194	7.47	0.36	9.1	90.8	0.1	-4.25	0.51	0.13	—	4.8	0.004	0.75	0.0	0.04	24.23	0.00	1.283	21.14	0.00	5.0	94.9	0.1	-1.25	2.84	0.84	0.72	—	19681	1610	11	324	2	0	0	logfile
✔	7LEZ	23295	2022-12-15	2021-01-15	4.15	2.14	4.23	3.9	0.007	1.20	0.0	0.06	10.28	0.01	1.255	12.12	0.91	10.1	89.2	0.7	-4.35	0.77	0.65	—	3.9	0.005	0.88	0.0	0.05	11.87	0.01	1.284	23.62	0.00	11.7	88.2	0.2	-1.92	1.81	0.78	0.67	—	27794	3654	20	0	12	0	0	logfile
✔	7NKU	12448	2022-12-15	2021-02-19	3.4	3.03	—	3.1	0.008	0.94	0.0	0.05	14.98	0.01	1.986	17.36	0.00	9.2	90.8	0.0	-0.63	0.74	0.77	1.90	3.1	0.004	0.83	1.0	0.04	17.74	0.01	1.286	16.79	0.63	7.6	92.4	0.0	-0.07	0.69	0.73	0.79	1.17	25332	3252	12	0	18	0	0	logfile
✔	6FTX	4318	2022-12-14	2018-02-25	4.5	5.25	—	4.4	0.020	2.39	14.0	0.12	26.03	0.04	1.732	68.81	3.23	8.1	90.3	1.6	-2.94	0.82	0.74	—	4.4	0.004	0.77	0.0	0.04	24.74	0.00	1.295	19.23	0.06	4.1	95.7	0.2	-1.04	1.80	0.82	0.75	—	21049	1808	13	319	2	0	0	logfile
✔	7LAS	23250	2022-12-14	2021-01-06	4.4	4.09	—	4.1	0.009	1.36	0.0	0.06	18.99	0.01	1.386	5.67	7.55	1.5	98.5	0.0	-2.56	0.60	0.75	—	4.1	0.003	0.69	0.0	0.04	16.28	0.00	1.298	11.94	0.00	7.1	92.9	0.0	-1.45	1.74	0.62	0.77	—	18011	1098	12	24	8	0	8624	logfile
✔	7LAR	23249	2022-12-13	2021-01-06	3.8	3.68	—	3.8	0.009	1.20	0.0	0.06	17.51	0.01	1.993	5.12	7.44	1.5	98.5	0.0	-2.56	0.62	0.81	2.85	3.8	0.002	0.67	0.0	0.04	16.30	0.00	1.298	8.95	0.52	6.5	93.5	0.0	-1.34	1.48	0.62	0.81	2.57	17714	1098	11	6	8	0	8697	logfile
✔	3JAP	3048	2022-12-17	2015-06-18	4.9	5.03	5.08	5.0	0.007	1.39	79.0	0.11	22.42	0.01	1.307	9.55	13.17	10.9	85.8	3.4	-1.68	0.68	0.69	—	4.9	0.003	0.75	0.0	0.04	18.86	0.01	1.298	21.68	0.03	9.5	89.6	0.8	-1.51	2.18	0.71	0.80	—	98333	7272	53	1869	255	0	0	logfile

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