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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LYT | 23601 | 2023-04-23 | 2021-03-08 | 2.9 | 2.52 | 2.91 | 3.0 | 0.009 | 0.55 | 0.0 | 0.04 | 18.78 | 0.03 | 2.087 | 7.16 | 0.33 | 0.0 | 100.0 | 0.0 | -1.59 | 0.82 | 0.80 | 2.24 | 3.0 | 0.004 | 0.85 | 0.0 | 0.04 | 19.93 | 0.00 | 1.280 | 9.04 | 1.82 | 5.4 | 94.6 | 0.0 | -0.15 | 1.22 | 0.83 | 0.82 | 3.02 | 14354 | 712 | 5 | 92 | 6 | 0 | 6722 | logfile |
✔ | 6CM3 | 7516 | 2023-04-27 | 2018-03-02 | 3.54 | 3.68 | — | 3.6 | 0.010 | 1.08 | 0.0 | 0.07 | 9.44 | 0.01 | 2.044 | 4.95 | 0.11 | 9.1 | 90.9 | 0.0 | -4.10 | 0.77 | 0.82 | 2.58 | 3.6 | 0.004 | 0.81 | 2.0 | 0.05 | 15.25 | 0.00 | 1.291 | 12.22 | 0.53 | 6.3 | 93.7 | 0.0 | -1.57 | 1.53 | 0.77 | 0.83 | 2.31 | 25455 | 3177 | 39 | 0 | 90 | 0 | 0 | logfile |
✔ | 6QC5 | 4497 | 2023-04-23 | 2018-12-26 | 4.3 | 4.44 | 4.37 | 4.3 | 0.009 | 1.29 | 0.0 | 1.03 | 11.80 | 0.01 | 2.162 | 8.03 | 0.72 | 12.3 | 87.5 | 0.2 | -4.12 | 0.64 | 0.77 | — | 4.3 | 0.009 | 1.72 | 0.0 | 0.31 | 13.58 | 0.01 | 1.296 | 20.13 | 0.01 | 10.9 | 89.1 | 0.0 | -1.54 | 1.04 | 0.65 | 0.78 | — | 65691 | 8136 | 57 | 0 | 16 | 0 | 0 | logfile |
✔ | 6FTX | 4318 | 2023-04-25 | 2018-02-25 | 4.5 | 5.25 | — | 4.4 | 0.020 | 2.39 | 14.0 | 0.12 | 26.03 | 0.04 | 1.732 | 68.74 | 3.23 | 8.1 | 90.3 | 1.6 | -2.94 | 0.82 | 0.74 | — | 4.4 | 0.003 | 0.74 | 0.0 | 0.04 | 24.43 | 0.00 | 1.296 | 17.46 | 0.06 | 3.8 | 95.9 | 0.2 | -0.66 | 1.78 | 0.82 | 0.75 | — | 21049 | 1808 | 13 | 319 | 2 | 0 | 0 | logfile |
✔ | 7LAR | 23249 | 2023-04-24 | 2021-01-06 | 3.8 | 3.68 | — | 3.8 | 0.009 | 1.20 | 0.0 | 0.06 | 17.51 | 0.01 | 1.993 | 5.01 | 7.44 | 1.5 | 98.5 | 0.0 | -2.56 | 0.62 | 0.81 | 2.85 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 16.50 | 0.00 | 1.298 | 9.23 | 0.52 | 7.4 | 92.5 | 0.1 | -1.73 | 1.47 | 0.61 | 0.81 | 2.60 | 17714 | 1098 | 11 | 6 | 8 | 0 | 8697 | logfile |
✔ | 7LAS | 23250 | 2023-04-24 | 2021-01-06 | 4.4 | 4.09 | — | 4.1 | 0.009 | 1.37 | 0.0 | 0.06 | 18.99 | 0.01 | 1.386 | 5.56 | 7.55 | 1.5 | 98.5 | 0.0 | -2.56 | 0.60 | 0.75 | — | 4.1 | 0.004 | 0.71 | 0.0 | 0.04 | 16.21 | 0.00 | 1.298 | 12.87 | 0.00 | 7.8 | 92.1 | 0.1 | -1.67 | 1.77 | 0.62 | 0.78 | — | 18011 | 1098 | 12 | 24 | 8 | 0 | 8624 | logfile |
✔ | 6Yo0 | 10862 | 2023-04-20 | 2020-04-14 | 2.9 | 3.37 | 2.94 | 3.1 | 0.009 | 0.75 | 0.0 | 0.04 | 9.57 | 0.00 | 1.889 | 11.21 | 0.27 | 3.7 | 96.3 | 0.0 | -0.60 | 0.84 | 0.87 | 3.83 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 13.62 | 0.00 | 1.300 | 8.27 | 0.64 | 4.4 | 95.6 | 0.0 | 1.08 | 0.80 | 0.84 | 0.89 | 3.23 | 55780 | 3598 | 17 | 0 | 10 | 0 | 28102 | logfile |
✔ | 7LoK | 23465 | 2023-04-23 | 2021-02-10 | 3.9 | 4.11 | — | 4.0 | 0.007 | 1.14 | 1.0 | 0.07 | 13.63 | 0.01 | 1.226 | 14.88 | 0.39 | 11.9 | 88.0 | 0.2 | -5.60 | 0.76 | 0.77 | 2.26 | 4.0 | 0.003 | 0.74 | 0.0 | 0.05 | 15.11 | 0.00 | 1.312 | 9.53 | 0.31 | 6.2 | 93.7 | 0.1 | -2.65 | 1.24 | 0.77 | 0.81 | 1.80 | 14498 | 1999 | 19 | 0 | 32 | 0 | 0 | logfile |
✔ | 6LLY | 0915 | 2023-04-20 | 2019-12-24 | 2.8 | 2.92 | 2.72 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 12.24 | 0.00 | 2.043 | 6.20 | 0.12 | 3.1 | 96.9 | 0.0 | -4.03 | 0.66 | 0.79 | 2.62 | 2.9 | 0.002 | 0.56 | 0.0 | 0.04 | 15.35 | 0.00 | 1.313 | 7.93 | 1.51 | 3.0 | 97.0 | 0.0 | 0.10 | 0.49 | 0.64 | 0.80 | 1.86 | 7774 | 1006 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7NKU | 12448 | 2023-04-27 | 2021-02-19 | 3.4 | 3.03 | — | 3.1 | 0.008 | 0.94 | 0.0 | 0.05 | 14.98 | 0.01 | 1.986 | 17.36 | 0.00 | 9.2 | 90.8 | 0.0 | -0.63 | 0.74 | 0.77 | 1.90 | 3.1 | 0.004 | 0.81 | 0.0 | 0.04 | 17.70 | 0.01 | 1.318 | 17.14 | 0.56 | 7.3 | 92.7 | 0.0 | -0.05 | 0.69 | 0.73 | 0.79 | 1.22 | 25332 | 3252 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 6JT2 | 9885 | 2023-04-20 | 2019-04-08 | 3.8 | 3.88 | — | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 11.14 | 0.01 | 1.980 | 10.08 | 3.54 | 4.0 | 95.7 | 0.3 | -2.54 | 0.80 | 0.80 | 2.23 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 13.57 | 0.00 | 1.319 | 10.96 | 0.12 | 3.7 | 96.3 | 0.0 | -0.17 | 1.66 | 0.82 | 0.81 | 1.64 | 8191 | 1075 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6W98 | 21580 | 2023-04-21 | 2020-03-22 | 2.9 | 3.47 | 2.92 | 3.3 | 0.010 | 0.86 | 0.0 | 0.05 | 12.85 | 0.01 | 1.990 | 2.62 | 0.00 | 4.4 | 95.6 | 0.1 | -4.30 | 0.67 | 0.84 | 3.77 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 14.49 | 0.00 | 1.327 | 7.85 | 1.81 | 3.9 | 96.1 | 0.0 | -0.06 | 0.49 | 0.67 | 0.85 | 3.05 | 10317 | 1389 | 3 | 0 | 4 | 1 | 0 | logfile |
✔ | 6LN9 | 0928 | 2023-04-20 | 2019-12-28 | 3.4 | 3.61 | 3.06 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 12.32 | 0.00 | 2.075 | 7.70 | 0.00 | 4.1 | 95.9 | 0.0 | -3.36 | 0.63 | 0.73 | 1.41 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.72 | 0.00 | 1.333 | 10.18 | 0.00 | 4.3 | 95.7 | 0.0 | -0.24 | 0.52 | 0.62 | 0.75 | 1.21 | 7612 | 987 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 5MMJ | 3532 | 2023-04-20 | 2016-12-10 | 3.6 | 3.88 | — | 3.6 | 0.008 | 1.15 | 0.0 | 0.05 | 16.66 | 0.01 | 1.774 | 10.61 | 7.28 | 4.9 | 94.8 | 0.3 | -3.46 | 0.92 | 0.86 | 1.28 | 3.6 | 0.005 | 0.71 | 0.0 | 0.04 | 16.28 | 0.01 | 1.334 | 19.32 | 1.26 | 5.4 | 94.4 | 0.1 | -0.53 | 1.60 | 0.91 | 0.85 | 1.05 | 55315 | 2806 | 31 | 1484 | 359 | 0 | 0 | logfile |
✔ | 7LEZ | 23295 | 2023-04-28 | 2021-01-15 | 4.15 | 2.14 | 4.23 | 3.9 | 0.007 | 1.20 | 0.0 | 0.06 | 10.28 | 0.01 | 1.255 | 11.76 | 0.91 | 10.1 | 89.2 | 0.7 | -4.35 | 0.77 | 0.65 | — | 3.9 | 0.004 | 0.85 | 0.0 | 0.05 | 11.82 | 0.01 | 1.347 | 22.59 | 0.00 | 10.7 | 89.2 | 0.2 | -1.86 | 1.82 | 0.78 | 0.66 | — | 27794 | 3654 | 20 | 0 | 12 | 0 | 0 | logfile |
✔ | 7K0S | 22615 | 2023-04-22 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 13.91 | 0.00 | 2.069 | 9.69 | 0.95 | 7.8 | 92.0 | 0.2 | -0.12 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.18 | 225.0 | 0.13 | 17.01 | 0.02 | 1.355 | 135.88 | 0.00 | 44.3 | 52.4 | 3.3 | -7.51 | 2.27 | 0.84 | 0.82 | — | 115935 | 12896 | 8 | 0 | 3557 | 0 | 0 | logfile |
✔ | 8ADG | 15362 | 2023-04-26 | 2022-07-08 | 3.0 | 3.31 | 3.06 | 3.3 | 0.006 | 0.62 | 0.0 | 0.04 | 14.03 | 0.00 | 1.941 | 3.67 | 0.00 | 4.0 | 96.0 | 0.0 | 0.24 | 0.64 | 0.82 | 3.73 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 15.23 | 0.00 | 1.375 | 3.11 | 1.11 | 4.0 | 96.0 | 0.0 | 0.35 | 0.90 | 0.60 | 0.83 | 3.53 | 23183 | 1506 | 6 | 0 | 0 | 0 | 11375 | logfile |
✔ | 6LN8 | 0927 | 2023-04-20 | 2019-12-28 | 3.1 | 3.26 | 3.33 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 12.81 | 0.00 | 2.051 | 6.74 | 0.00 | 3.0 | 97.0 | 0.0 | -2.71 | 0.70 | 0.80 | 2.37 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 15.08 | 0.00 | 1.381 | 9.56 | 0.12 | 3.1 | 96.9 | 0.0 | 0.11 | 0.48 | 0.69 | 0.82 | 1.70 | 7739 | 1003 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6YJ4 | 10815 | 2023-04-23 | 2020-04-02 | 2.7 | 2.35 | 2.73 | 2.6 | 0.011 | 1.10 | 0.0 | 0.65 | 14.88 | 0.01 | 2.031 | 2.88 | 0.03 | 4.1 | 95.8 | 0.0 | -2.17 | 0.58 | 0.79 | 4.22 | 2.6 | 0.005 | 1.02 | 0.0 | 0.18 | 16.77 | 0.00 | 1.387 | 7.10 | 1.40 | 3.4 | 96.6 | 0.0 | 0.78 | 0.57 | 0.63 | 0.84 | 3.70 | 66311 | 8126 | 94 | 0 | 50 | 275 | 0 | logfile |
✔ | 7SLQ | 25198 | 2023-04-20 | 2021-10-24 | 3.7 | 3.95 | — | 3.9 | 0.011 | 1.16 | 1.0 | 0.06 | 14.97 | 0.01 | 2.144 | 6.53 | 1.35 | 3.7 | 96.3 | 0.0 | -2.83 | 0.74 | 0.70 | 2.35 | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 16.03 | 0.01 | 1.388 | 8.68 | 0.22 | 5.1 | 94.9 | 0.0 | 0.17 | 1.30 | 0.75 | 0.72 | 1.87 | 5451 | 559 | 4 | 50 | 1 | 0 | 0 | logfile |