Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KPJ	0748	2023-07-06	2019-08-15	2.56	3.82	—	3.3	0.014	0.94	0.0	0.06	12.22	0.00	1.218	8.38	0.00	6.7	93.3	0.0	-4.33	0.85	0.86	3.83	3.3	0.005	0.73	1.0	0.13	14.32	0.00	1.110	6.83	0.50	3.1	96.9	0.0	0.92	0.69	0.85	0.87	3.62	62845	3936	24	0	48	0	31225	logfile
✔	6TPQ	10543	2023-07-16	2019-12-13	3.07	4.01	—	3.3	0.008	0.68	0.0	0.04	16.20	0.00	1.176	12.58	0.04	9.5	90.5	0.0	-4.14	0.92	0.90	2.30	3.3	0.006	0.66	0.0	0.04	16.32	0.00	1.112	12.42	0.83	7.8	92.2	0.0	-1.72	0.35	0.92	0.91	1.80	91728	3346	39	3047	222	0	0	logfile
✔	8EVU	28637	2023-07-06	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.09	0.00	2.279	2.29	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.006	0.58	0.0	0.04	13.31	0.00	1.114	4.50	0.88	2.5	97.5	0.0	1.40	0.42	0.76	0.91	3.89	11902	1540	9	0	5	0	0	logfile
✔	7NSH	12567	2023-07-05	2021-03-07	3.2	3.39	3.12	3.3	0.003	0.53	0.0	0.05	15.69	0.00	1.187	7.76	0.02	4.2	95.8	0.1	0.71	0.80	0.84	2.70	3.3	0.002	0.55	0.0	0.04	16.92	0.00	1.115	8.46	0.33	4.0	96.0	0.0	0.81	0.52	0.79	0.89	2.50	112448	9643	79	1611	229	2	0	logfile
✔	7N0C	24103	2023-07-04	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	13.78	0.01	2.180	6.79	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.003	0.63	0.0	0.04	14.78	0.00	1.116	12.44	0.36	5.0	95.0	0.0	-1.35	0.48	0.72	0.80	1.96	6088	644	6	49	7	1	0	logfile
✔	7XHA	33192	2023-07-05	2022-04-07	3.35	3.57	3.29	3.5	0.008	1.06	4.0	0.07	11.41	0.01	1.860	7.27	0.28	4.7	95.2	0.1	-3.53	0.69	0.78	2.40	3.5	0.003	0.62	0.0	0.04	15.15	0.00	1.117	8.85	0.19	3.7	96.3	0.0	0.52	1.24	0.72	0.82	2.12	10102	1270	5	0	3	0	0	logfile
✔	3J92	2832	2023-07-20	2014-12-02	3.6	3.74	—	3.7	0.010	1.59	52.0	0.11	21.53	0.01	1.186	15.75	18.87	11.1	85.7	3.2	-3.22	0.79	0.74	0.42	3.7	0.004	0.75	0.0	0.04	18.76	0.01	1.122	15.15	0.52	7.2	92.3	0.4	-1.51	1.12	0.86	0.86	1.69	146386	7246	65	4013	593	0	0	logfile
✔	7EN1	31199	2023-07-18	2021-04-15	3.47	3.85	3.42	3.6	0.013	1.97	7.0	0.10	15.10	0.02	1.796	0.83	1.72	5.2	94.6	0.3	-2.33	0.86	0.77	2.39	3.6	0.003	0.65	0.0	0.04	15.13	0.00	1.126	13.65	0.10	5.0	95.0	0.0	-0.21	0.80	0.86	0.79	2.02	40862	2656	4	0	8	0	20419	logfile
✔	6B6H	7059	2023-07-11	2017-10-02	3.9	4.15	—	3.7	0.008	0.96	0.0	0.05	15.91	0.01	1.944	6.23	0.03	8.9	91.0	0.2	-4.47	0.71	0.48	1.58	3.8	0.004	0.67	0.0	0.04	17.34	0.00	1.132	13.86	0.28	8.5	91.4	0.0	-1.79	1.53	0.84	0.64	1.47	72070	4188	15	178	6	0	35400	logfile
✔	6oAA	0666	2023-07-09	2019-03-15	4.1	4.22	4.19	4.2	0.006	1.06	1.0	0.05	16.65	0.01	1.317	13.46	0.34	8.3	91.5	0.3	-5.52	0.63	0.70	—	4.2	0.003	0.85	0.0	0.05	15.49	0.00	1.132	14.72	0.00	9.4	90.4	0.1	-2.19	0.88	0.66	0.75	—	19546	2494	10	0	14	0	0	logfile
✔	7oiG	12929	2023-07-19	2021-05-11	3.2	3.93	3.16	3.0	0.011	1.03	0.0	0.06	14.40	0.02	1.449	8.53	0.21	3.6	96.2	0.1	-3.86	0.88	0.85	2.63	3.0	0.005	0.73	0.0	0.04	15.28	0.01	1.135	15.25	0.81	4.0	96.0	0.0	-0.10	1.61	0.91	0.90	2.19	145136	5738	68	4651	402	0	0	logfile
✔	6ZoL	11322	2023-07-12	2020-07-07	2.8	3.00	2.78	2.9	0.003	0.55	0.0	0.04	14.47	0.00	1.309	4.02	1.49	3.0	97.0	0.0	0.69	0.75	0.87	3.29	3.0	0.003	0.57	0.0	0.04	16.43	0.00	1.136	5.15	2.57	3.1	96.9	0.0	0.64	3.08	0.76	0.88	2.77	25591	1944	22	472	59	0	0	logfile
✔	8G27	29678	2023-07-16	2023-02-03	3.3	3.75	3.55	3.7	0.003	0.59	7.0	0.07	14.86	0.00	1.501	5.09	0.05	5.2	94.6	0.2	0.80	0.68	0.83	1.69	3.7	0.003	0.61	6.0	0.07	15.49	0.00	1.139	4.86	0.05	5.9	93.9	0.2	0.70	1.02	0.69	0.86	1.89	34373	2157	9	3	21	2	16852	logfile
✔	3J9S	6272	2023-07-05	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.62	0.0	0.04	17.43	0.00	1.145	9.20	1.43	1.5	98.5	0.0	1.37	1.90	0.70	0.89	3.19	9813	1191	3	0	15	315	0	logfile
✔	7JMF	22392	2023-07-08	2020-07-31	4.5	5.06	—	4.7	0.005	0.98	0.0	0.05	10.23	0.01	1.373	8.08	0.36	11.2	88.6	0.2	-4.91	0.54	0.27	—	7.7	0.004	0.94	0.0	0.05	11.59	0.01	1.145	21.14	0.00	11.3	88.5	0.2	-3.66	1.53	0.76	0.56	—	120756	13500	12	0	3608	0	0	logfile
✔	7Y04	33537	2023-07-06	2022-06-03	3.5	4.03	—	4.0	0.004	0.76	0.0	0.04	15.69	0.00	2.217	6.36	0.75	4.7	95.3	0.0	-2.60	0.57	0.66	2.70	4.0	0.003	0.62	0.0	0.04	16.45	0.00	1.145	6.40	0.52	4.0	96.0	0.0	-1.50	1.57	0.63	0.73	2.32	12050	1475	7	0	4	0	0	logfile
✔	7NWT	12635	2023-07-26	2021-03-17	2.66	2.63	—	2.6	0.011	0.84	0.0	0.05	14.14	0.02	1.145	4.87	2.95	2.6	97.4	0.0	-2.35	0.85	0.88	4.38	2.7	0.002	0.65	0.0	0.04	15.17	0.01	1.149	8.11	2.80	3.2	96.8	0.0	0.13	0.28	0.87	0.88	3.51	149932	6355	74	4641	439	2	0	logfile
✔	6GYS	0096	2023-07-17	2018-07-01	4.4	5.08	—	4.4	0.008	1.12	0.0	0.06	15.13	0.01	0.873	14.94	0.56	10.8	89.1	0.1	-4.13	0.92	0.82	—	4.4	0.006	0.82	0.0	0.04	15.64	0.01	1.149	29.08	0.00	10.6	89.3	0.0	-1.57	1.29	0.93	0.83	—	38890	4441	16	104	8	0	0	logfile
✔	7BoH	12243	2023-07-20	2021-01-25	2.82	3.09	2.90	2.8	0.006	0.62	4.0	0.04	13.86	0.02	0.657	6.27	0.00	3.3	96.7	0.0	-1.47	0.82	0.80	2.52	2.8	0.007	0.74	0.0	0.04	15.09	0.01	1.151	13.60	2.33	4.1	95.9	0.0	-0.12	1.22	0.87	0.90	2.24	52154	2445	25	1527	157	0	0	logfile
✔	6QC3	4495	2023-07-17	2018-12-26	4.2	4.28	4.21	4.2	0.010	1.32	1.0	0.85	12.09	0.01	1.873	8.18	0.75	11.7	88.1	0.1	-3.94	0.67	0.75	—	4.2	0.008	1.49	0.0	0.26	13.53	0.01	1.159	18.23	0.10	10.5	89.5	0.0	-1.30	1.75	0.69	0.78	—	96897	12010	84	0	77	0	0	logfile

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