Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FYY	4328	2022-05-17	2018-03-12	3.02	3.15	3.09	3.1	0.008	1.34	57.0	0.11	20.67	0.02	0.817	7.50	10.74	8.2	89.1	2.7	-1.95	0.63	0.83	1.68	3.1	0.006	0.80	0.0	0.04	19.40	0.01	1.074	16.67	0.34	6.9	92.4	0.7	-0.34	1.43	0.64	0.80	1.56	104316	8066	54	1886	200	0	0	logfile
✔	3J92	2832	2022-05-19	2014-12-02	3.6	3.74	—	3.7	0.010	1.59	52.0	0.11	21.53	0.01	1.186	15.82	18.87	11.1	85.7	3.2	-3.22	0.79	0.74	0.42	3.7	0.008	0.86	0.0	0.04	18.89	0.01	1.077	16.31	0.29	7.5	91.9	0.6	-1.59	1.00	0.86	0.86	1.65	146386	7246	65	4013	593	0	0	logfile
✔	5GAF	8002	2022-05-17	2015-11-25	4.3	4.42	—	4.3	0.007	1.09	1.0	0.05	15.95	0.01	1.266	8.96	11.04	3.5	96.4	0.1	-3.28	0.63	0.64	—	4.3	0.005	0.72	0.0	0.04	14.87	0.01	1.078	19.95	0.10	4.5	95.4	0.2	-0.99	1.32	0.71	0.84	—	96182	3889	47	3049	452	0	0	logfile
✔	5WFS	8829	2022-05-25	2017-07-12	3.0	3.09	3.13	3.0	0.008	1.18	2.0	0.10	18.12	0.02	1.324	4.25	3.10	9.3	88.2	2.4	-4.11	0.73	0.77	2.42	3.0	0.006	0.84	0.0	0.04	17.51	0.01	1.080	12.75	3.60	8.3	91.1	0.5	-1.91	0.63	0.83	0.84	2.24	155100	6324	114	4802	1479	1175	0	logfile
✔	6ZMW	11302	2022-05-14	2020-07-04	3.7	3.79	3.57	3.7	0.008	1.24	0.0	0.06	16.23	0.02	1.291	7.28	2.46	6.4	93.3	0.2	-2.63	0.70	0.65	1.27	3.7	0.007	0.85	1.0	0.04	16.93	0.01	1.083	18.31	0.25	5.9	94.0	0.1	-1.17	1.34	0.73	0.74	1.36	118155	11116	62	1822	91	0	0	logfile
✔	7NVN	12607	2022-05-14	2021-03-15	3.0	3.12	2.93	3.1	0.004	0.62	0.0	0.04	14.51	0.00	1.909	8.81	1.66	3.2	96.7	0.1	-2.07	0.64	0.77	2.98	3.1	0.005	0.71	0.0	0.04	17.00	0.00	1.088	10.81	2.33	3.3	96.7	0.0	0.64	0.53	0.73	0.85	2.86	69139	8970	51	0	48	19	0	logfile
✔	6ZXF	11519	2022-05-16	2020-07-29	3.7	3.68	3.69	3.5	0.010	0.98	0.0	0.05	16.80	0.01	1.937	8.55	0.65	8.5	91.5	0.0	-3.70	0.87	0.81	1.63	3.4	0.003	0.65	0.0	0.04	16.80	0.00	1.090	14.63	0.69	5.0	95.0	0.0	-0.98	0.59	0.87	0.82	1.45	80133	5758	41	1656	6	0	0	logfile
✔	7BoE	12240	2022-05-18	2021-01-25	2.9	3.08	2.98	2.9	0.008	0.78	3.0	0.05	14.41	0.02	1.885	6.98	0.66	2.3	97.7	0.0	-1.12	0.77	0.78	2.22	2.9	0.006	0.74	0.0	0.04	15.74	0.01	1.090	14.96	2.78	3.3	96.7	0.0	-0.16	0.73	0.83	0.88	2.12	51969	2400	23	1534	153	0	0	logfile
✔	6FTi	4316	2022-05-24	2018-02-22	4.2	4.31	—	4.2	0.011	1.38	18.0	0.10	19.92	0.01	0.284	12.10	11.77	9.7	87.9	2.4	-4.07	0.61	0.61	—	4.2	0.006	0.90	1.0	0.04	17.87	0.01	1.092	27.38	0.04	8.8	90.7	0.6	-1.71	0.94	0.63	0.66	—	153850	8349	75	4014	399	0	0	logfile
✔	5iQR	8107	2022-05-24	2016-03-11	3.0	3.10	3.03	3.1	0.008	1.25	41.0	0.10	17.19	0.02	0.899	7.55	6.07	7.5	91.0	1.5	-2.52	0.76	0.81	1.93	3.0	0.006	0.84	1.0	0.04	16.85	0.01	1.093	16.86	3.60	5.9	93.8	0.2	-1.10	1.64	0.82	0.87	1.98	154519	6570	74	4794	303	2	0	logfile
✔	5GAH	8004	2022-05-16	2015-11-26	3.8	3.97	—	3.9	0.008	1.10	0.0	0.05	15.97	0.01	1.737	8.39	11.31	3.3	96.7	0.1	-3.33	0.73	0.85	1.12	3.9	0.006	0.69	0.0	0.04	15.40	0.01	1.093	15.00	1.03	4.4	95.4	0.1	-0.90	1.16	0.74	0.87	1.51	94027	3595	46	3049	473	0	0	logfile
✔	6LSR	0963	2022-05-18	2020-01-20	3.13	3.20	—	3.1	0.014	1.21	2.0	0.06	17.04	0.03	1.256	4.48	1.18	7.5	92.2	0.2	-3.92	0.80	0.83	3.18	3.1	0.004	0.81	0.0	0.04	17.13	0.01	1.094	8.73	0.28	6.6	93.4	0.0	-1.30	1.12	0.80	0.83	2.76	141172	7581	57	3757	246	7	0	logfile
✔	6i9R	4434	2022-05-17	2018-11-25	3.9	4.02	3.89	4.0	0.005	0.62	0.0	0.05	13.42	0.01	1.512	3.67	0.01	3.8	96.1	0.0	-3.40	0.79	0.81	1.34	3.9	0.006	0.73	0.0	0.04	16.26	0.01	1.095	15.33	0.73	4.6	95.4	0.0	-0.34	1.74	0.82	0.86	1.52	100274	8198	62	1562	139	0	0	logfile
✔	6TUP	10593	2022-05-15	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.6	0.039	2.56	0.0	0.24	27.07	0.01	1.098	116.88	1.25	3.2	96.8	0.0	-2.76	8.49	0.55	0.60	-0.09	22400	2300	100	300	0	0	0	logfile
✔	7RPW	24624	2022-05-13	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.19	0.00	1.756	18.15	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.003	0.67	0.0	0.04	18.59	0.00	1.099	14.58	0.00	8.3	91.6	0.1	-3.11	3.75	0.76	0.66	—	10594	1179	10	62	5	0	0	logfile
✔	7N0C	24103	2022-05-12	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	13.78	0.01	2.180	6.87	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.003	0.64	0.0	0.04	14.71	0.00	1.109	12.01	0.36	5.5	94.5	0.0	-1.49	0.49	0.71	0.79	1.79	6088	644	6	49	7	1	0	logfile
✔	7NWT	12635	2022-05-22	2021-03-17	2.66	2.63	—	2.6	0.011	0.84	0.0	0.05	14.15	0.02	1.145	4.95	2.95	2.6	97.4	0.0	-2.35	0.85	0.88	4.38	2.7	0.003	0.66	0.0	0.04	15.21	0.01	1.109	7.29	2.74	3.3	96.7	0.0	0.04	0.28	0.86	0.86	3.54	149932	6355	74	4641	439	2	0	logfile
✔	5XYM	6789	2022-05-16	2017-07-09	3.08	3.42	—	3.4	0.006	1.01	7.0	0.10	16.02	0.00	1.297	4.10	2.56	7.8	89.6	2.5	-3.59	0.66	0.78	3.19	3.4	0.004	0.64	1.0	0.03	15.42	0.01	1.114	8.19	0.12	7.8	91.2	1.1	-1.59	1.41	0.77	0.85	2.41	84069	3122	32	2781	146	0	0	logfile
✔	6B6H	7059	2022-05-15	2017-10-02	3.9	4.15	—	3.7	0.008	0.96	0.0	0.05	15.91	0.01	1.944	6.27	0.03	8.9	91.0	0.2	-4.47	0.71	0.48	1.58	3.8	0.004	0.68	0.0	0.04	17.37	0.00	1.117	14.17	0.28	9.5	90.5	0.0	-1.77	1.53	0.84	0.65	1.45	72070	4188	15	178	6	0	35400	logfile
✔	7EN1	31199	2022-05-17	2021-04-15	3.47	3.85	3.42	3.6	0.013	1.97	7.0	0.10	15.04	0.02	1.796	1.12	1.72	5.2	94.6	0.3	-2.33	0.86	0.77	2.39	3.6	0.004	0.66	0.0	0.04	15.14	0.00	1.119	14.32	0.00	5.2	94.8	0.0	-0.25	0.79	0.86	0.79	2.10	40862	2656	4	0	8	0	20419	logfile

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