Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KTP	23025	2022-07-03	2020-11-24	4.8	4.79	—	4.6	0.005	0.73	0.0	0.05	11.99	0.00	2.221	2.32	0.00	4.5	95.5	0.0	-4.13	0.71	0.69	—	4.6	0.003	0.69	0.0	0.04	12.97	0.00	1.174	18.09	0.00	5.0	95.0	0.0	-0.97	2.24	0.75	0.77	—	12008	1544	5	0	7	0	0	logfile
✔	6PEK	20327	2022-07-03	2019-06-20	4.2	4.25	—	4.2	0.005	0.73	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.73	0.0	0.04	14.72	0.00	1.181	13.26	0.00	2.3	97.7	0.0	-0.17	1.46	0.71	0.76	—	11106	1405	11	0	13	0	0	logfile
✔	6CM3	7516	2022-07-05	2018-03-02	3.54	3.68	—	3.6	0.009	1.05	0.0	0.07	9.42	0.01	2.044	5.03	0.11	9.1	90.9	0.0	-4.10	0.77	0.82	2.58	3.6	0.004	0.78	1.0	0.05	14.76	0.00	1.195	11.74	0.30	5.7	94.3	0.0	-1.57	1.53	0.77	0.83	2.25	25455	3177	27	0	90	0	0	logfile
✔	7LXT	23574	2022-07-08	2021-03-05	3.4	3.70	3.40	3.7	0.009	0.85	0.0	0.05	14.67	0.00	1.972	18.16	0.79	10.7	89.3	0.0	-2.90	0.75	0.82	2.36	3.7	0.008	0.86	2.0	0.04	16.40	0.00	1.208	14.81	0.07	7.7	92.3	0.0	-1.68	0.39	0.76	0.84	1.70	50536	6318	34	0	6	0	0	logfile
✔	7KSo	23021	2022-07-03	2020-11-23	3.9	4.08	—	4.0	0.004	0.73	1.0	0.05	11.73	0.00	2.151	3.99	0.29	4.7	95.3	0.0	-3.99	0.68	0.74	1.12	4.0	0.004	0.71	0.0	0.05	15.27	0.00	1.213	12.77	0.66	5.3	94.7	0.0	-1.42	0.80	0.73	0.81	1.55	13075	1690	8	0	8	0	0	logfile
✔	6GZQ	0101	2022-07-07	2018-07-04	3.28	3.72	—	3.6	0.017	1.33	0.0	0.06	17.34	0.01	1.769	5.59	0.58	15.1	84.4	0.5	-5.41	0.79	0.83	2.31	3.6	0.007	0.87	1.0	0.04	17.36	0.01	1.216	13.91	0.72	13.1	86.8	0.1	-3.60	0.64	0.79	0.83	1.63	144138	5820	53	4540	0	0	0	logfile
✔	3JAP	3048	2022-07-06	2015-06-18	4.9	5.03	5.08	5.0	0.007	1.39	79.0	0.11	22.42	0.01	1.307	9.55	13.17	10.9	85.8	3.4	-1.68	0.68	0.69	—	4.9	0.004	0.80	0.0	0.04	19.12	0.01	1.219	25.22	0.03	10.0	89.2	0.8	-1.85	2.20	0.72	0.80	—	98333	7272	53	1869	255	0	0	logfile
✔	5XLP	6731	2022-07-03	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.2	0.013	1.39	0.0	0.05	16.16	0.01	1.225	26.23	0.11	16.4	83.3	0.3	-4.10	2.32	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	5VZL	8749	2022-07-04	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.76	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.010	1.23	1.0	0.05	16.68	0.01	1.239	23.62	0.25	9.1	90.9	0.0	-2.51	2.13	0.41	0.22	0.62	13915	1451	3	115	1	0	0	logfile
✔	7WS3	32742	2022-07-06	2022-01-28	3.6	4.00	—	3.8	0.003	0.61	0.0	0.05	12.98	0.00	2.202	7.91	0.03	3.2	96.8	0.0	-0.92	0.80	0.76	2.72	3.8	0.007	0.86	0.0	0.05	15.12	0.01	1.240	11.37	0.12	4.6	95.4	0.0	-0.75	1.00	0.83	0.83	2.39	30215	3811	27	0	54	0	0	logfile
✔	5UYK	8615	2022-07-11	2017-02-24	3.9	4.36	4.13	3.8	0.008	1.03	0.0	0.09	13.52	0.01	2.162	11.57	0.88	11.8	86.4	1.7	-4.85	0.89	0.83	1.06	3.6	0.006	0.86	0.0	0.04	16.40	0.01	1.253	37.25	0.58	13.6	86.2	0.2	-3.09	2.71	0.90	0.85	0.83	154412	6563	60	4812	1	0	0	logfile
✔	7NVW	12615	2022-07-05	2021-03-16	4.3	4.32	4.26	4.2	0.002	0.45	0.0	0.04	15.45	0.00	1.971	6.79	0.00	4.4	95.6	0.0	0.80	0.71	0.66	—	4.2	0.008	0.89	1.0	0.05	15.84	0.01	1.253	22.36	0.00	4.7	95.3	0.0	-0.56	1.05	0.73	0.68	—	23647	2814	17	42	35	0	0	logfile
✔	7VEB	31945	2022-07-07	2021-09-08	4.2	4.27	—	4.2	0.011	1.38	0.0	0.05	13.75	0.00	2.165	8.08	0.74	2.6	97.4	0.0	0.70	0.82	0.85	—	4.2	0.009	1.05	0.0	0.04	15.22	0.01	1.262	26.18	0.00	2.8	97.1	0.1	0.83	2.10	0.81	0.82	—	35530	4537	51	0	36	0	0	logfile
✔	6LLY	0915	2022-07-03	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.60	0.0	0.04	12.24	0.00	2.043	6.33	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.002	0.57	0.0	0.04	15.50	0.00	1.263	8.82	1.75	2.9	97.1	0.0	-0.03	0.48	0.66	0.80	1.81	7774	1006	1	0	2	0	0	logfile
✔	6V6S	21073	2022-07-02	2019-12-05	4.3	3.91	—	3.8	0.006	0.75	1.0	0.05	13.81	0.00	2.102	10.56	0.63	5.0	94.9	0.1	-4.11	0.58	0.50	—	3.8	0.007	0.76	1.0	0.04	13.85	0.00	1.263	13.54	0.05	3.7	96.3	0.0	-0.16	1.00	0.56	0.53	—	106422	13155	53	14	721	0	0	logfile
✔	5NCo	3617	2022-07-06	2017-03-06	4.8	5.02	—	4.8	0.007	1.14	0.0	0.05	15.62	0.00	1.168	8.62	9.43	3.1	96.8	0.1	-2.95	0.70	0.76	—	4.8	0.003	0.65	0.0	0.03	14.99	0.00	1.276	21.79	0.00	4.3	95.6	0.1	-0.05	1.17	0.71	0.83	—	101694	4738	43	3112	46	0	0	logfile
✔	6ZLQ	11272	2022-07-06	2020-07-01	3.3	3.41	—	3.3	0.009	0.74	0.0	0.04	17.49	0.00	0.983	16.41	8.48	3.6	96.4	0.0	-3.01	0.81	0.83	1.76	3.3	0.003	0.60	0.0	0.03	18.08	0.00	1.283	15.19	1.05	0.8	99.2	0.0	3.29	0.69	0.80	0.83	1.13	33823	4185	38	0	16	0	0	logfile
✔	6JT2	9885	2022-07-03	2019-04-08	3.8	3.88	—	3.8	0.004	0.74	0.0	0.04	11.14	0.01	1.980	10.39	3.54	4.0	95.7	0.3	-2.54	0.80	0.80	2.23	3.8	0.003	0.69	0.0	0.04	13.63	0.01	1.284	10.39	0.12	3.5	96.5	0.0	-0.11	1.66	0.82	0.81	1.53	8191	1075	4	0	4	0	0	logfile
✔	7LEZ	23295	2022-07-05	2021-01-15	4.15	2.14	4.23	3.9	0.007	1.20	0.0	0.06	10.28	0.01	1.255	12.12	0.91	10.1	89.2	0.7	-4.35	0.77	0.65	—	3.9	0.004	0.85	0.0	0.05	11.75	0.01	1.288	23.07	0.00	11.6	88.2	0.2	-1.83	1.81	0.78	0.66	—	27794	3654	20	0	12	0	0	logfile
✔	6FTX	4318	2022-07-04	2018-02-25	4.5	5.25	—	4.4	0.020	2.39	14.0	0.12	26.03	0.04	1.732	68.81	3.23	8.1	90.3	1.6	-2.94	0.82	0.74	—	4.4	0.003	0.75	0.0	0.04	24.55	0.00	1.289	16.36	0.06	3.9	95.9	0.2	-0.87	1.80	0.82	0.75	—	21049	1808	13	319	2	0	0	logfile

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