Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oiQ	16896	2023-11-15	2023-03-23	3.5	3.76	3.59	3.7	0.003	0.41	0.0	0.03	11.82	0.01	1.362	5.13	0.63	2.7	97.3	0.0	0.46	0.64	0.82	2.68	3.7	0.004	0.62	0.0	0.04	15.42	0.00	1.332	8.52	0.39	4.2	95.8	0.0	0.13	0.65	0.64	0.83	2.18	112981	9379	77	1718	238	0	0	logfile
✔	6LN9	0928	2023-11-14	2019-12-28	3.4	3.61	3.06	3.6	0.003	0.54	0.0	0.04	12.32	0.00	2.075	7.70	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.003	0.60	0.0	0.04	14.72	0.00	1.333	10.18	0.00	4.3	95.7	0.0	-0.24	0.52	0.62	0.75	1.21	7612	987	1	0	2	0	0	logfile
✔	7LEZ	23295	2023-11-19	2021-01-15	4.15	2.14	4.23	3.9	0.007	1.20	0.0	0.06	10.28	0.01	1.255	11.76	0.91	10.1	89.2	0.7	-4.35	0.77	0.65	—	3.9	0.004	0.85	0.0	0.05	11.82	0.01	1.347	22.59	0.00	10.7	89.2	0.2	-1.86	1.82	0.78	0.66	—	27794	3654	20	0	12	0	0	logfile
✔	7K0S	22615	2023-11-15	2020-09-05	4.5	4.73	4.68	4.6	0.003	0.64	2.0	0.04	13.91	0.00	2.069	9.69	0.95	7.8	92.0	0.2	-0.12	0.80	0.73	—	4.6	0.043	3.18	225.0	0.13	17.01	0.02	1.355	135.88	0.00	44.3	52.4	3.3	-7.51	2.27	0.84	0.82	—	115935	12896	8	0	3557	0	0	logfile
✔	7AM2	11821	2023-11-20	2020-10-07	3.4	3.52	—	3.4	0.009	0.95	43.0	0.07	20.01	0.01	1.157	23.90	8.65	15.0	84.3	0.7	-5.47	0.64	0.76	1.98	3.4	0.006	0.80	1.0	0.04	19.77	0.01	1.364	18.21	0.74	11.1	88.8	0.1	-2.70	1.83	0.64	0.78	1.71	139523	15384	80	839	42	0	0	logfile
✔	7LF1	23297	2023-11-21	2021-01-15	4.04	4.49	4.10	4.2	0.006	1.07	0.0	0.06	9.39	0.01	1.592	12.06	0.16	12.9	86.7	0.4	-4.16	0.83	0.66	—	4.2	0.003	0.79	0.0	0.05	11.02	0.01	1.369	21.17	0.00	11.4	88.5	0.1	-2.15	1.32	0.86	0.75	—	34518	4548	24	0	12	0	0	logfile
✔	7SLQ	25198	2023-11-13	2021-10-24	3.7	3.95	—	3.9	0.011	1.16	1.0	0.06	14.97	0.01	2.144	6.53	1.35	3.7	96.3	0.0	-2.83	0.74	0.70	2.35	3.9	0.002	0.57	0.0	0.04	15.85	0.01	1.369	9.36	0.22	4.8	95.2	0.0	0.01	1.31	0.74	0.72	1.83	5451	559	4	50	1	0	0	logfile
✔	7LF2	23298	2023-11-21	2021-01-15	3.72	4.26	3.84	4.0	0.007	1.03	0.0	0.06	9.01	0.01	0.855	11.53	0.16	11.0	88.9	0.1	-4.07	0.80	0.70	1.81	4.0	0.004	0.76	0.0	0.05	12.61	0.00	1.374	21.01	0.27	9.9	90.0	0.1	-2.03	2.49	0.81	0.73	1.81	33798	4452	24	0	12	0	0	logfile
✔	8ADG	15362	2023-11-18	2022-07-08	3.0	3.31	3.06	3.3	0.006	0.62	0.0	0.04	14.03	0.00	1.941	3.67	0.00	4.0	96.0	0.0	0.24	0.64	0.82	3.73	3.3	0.003	0.51	0.0	0.04	15.23	0.00	1.375	3.11	1.11	4.0	96.0	0.0	0.35	0.90	0.60	0.83	3.53	23183	1506	6	0	0	0	11375	logfile
✔	6LN8	0927	2023-11-14	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.003	0.54	0.0	0.04	15.08	0.00	1.381	9.56	0.12	3.1	96.9	0.0	0.11	0.48	0.69	0.82	1.70	7739	1003	1	0	2	0	0	logfile
✔	8ESW	28581	2023-11-16	2022-10-15	3.3	3.67	3.46	3.7	0.006	1.01	0.0	1.05	16.05	0.01	1.932	5.33	0.63	3.0	97.0	0.0	-2.36	0.74	0.83	2.53	3.6	0.008	1.59	0.0	0.31	16.59	0.00	1.384	8.96	0.26	2.8	97.2	0.0	0.85	0.36	0.75	0.87	2.27	66555	8036	64	0	76	0	0	logfile
✔	6YJ4	10815	2023-11-16	2020-04-02	2.7	2.35	2.73	2.6	0.011	1.10	0.0	0.65	14.88	0.01	2.031	2.88	0.03	4.1	95.8	0.0	-2.17	0.58	0.79	4.22	2.6	0.005	1.02	0.0	0.18	16.77	0.00	1.387	7.10	1.40	3.4	96.6	0.0	0.78	0.57	0.63	0.84	3.70	66311	8126	94	0	50	275	0	logfile
✔	7oP8	13014	2023-11-14	2021-05-31	3.5	3.85	—	3.8	0.004	0.86	0.0	0.05	14.44	0.01	1.950	6.41	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	3.8	0.003	0.63	0.0	0.04	16.12	0.00	1.389	10.40	0.21	6.2	93.8	0.0	-0.75	1.73	0.66	0.78	0.83	8872	1118	1	0	2	0	0	logfile
✔	6W98	21580	2023-11-15	2020-03-22	2.9	3.47	2.92	3.3	0.010	0.86	0.0	0.05	12.86	0.01	1.990	2.62	0.00	4.4	95.6	0.1	-4.30	0.67	0.84	3.77	3.3	0.002	0.64	0.0	0.04	14.47	0.00	1.406	7.56	1.43	3.4	96.6	0.0	-0.01	0.50	0.66	0.84	2.75	10317	1389	3	0	4	1	0	logfile
✔	6T0V	10360	2023-11-17	2019-10-03	3.02	3.10	3.02	3.1	0.009	0.87	0.0	0.05	15.92	0.01	1.859	6.70	7.38	4.9	95.1	0.0	-3.31	0.66	0.83	3.33	3.1	0.002	0.54	0.0	0.04	16.58	0.00	1.409	9.31	0.21	3.0	97.0	0.0	0.11	0.64	0.65	0.84	2.71	18604	2190	8	43	8	0	0	logfile
✔	7YZi	14388	2023-11-17	2022-02-20	3.83	4.67	3.78	4.2	0.009	1.67	2.0	0.09	18.28	0.04	1.618	25.57	11.24	4.9	94.2	0.8	-0.97	0.66	0.67	0.86	4.2	0.003	0.73	0.0	0.12	14.79	0.00	1.413	12.76	0.69	3.9	95.6	0.5	0.72	3.48	0.68	0.78	0.86	16891	1107	7	0	6	0	8375	logfile
✔	7NV0	12601	2023-11-14	2021-03-15	3.4	2.96	—	2.9	0.011	1.13	0.0	0.06	19.67	0.01	2.205	8.09	1.30	8.1	91.9	0.0	-4.56	0.60	0.68	2.36	2.9	0.004	0.70	0.0	0.04	20.69	0.00	1.418	12.21	0.33	4.1	95.9	0.0	-1.44	0.67	0.58	0.70	2.12	9928	1180	7	53	1	0	0	logfile
✔	7QTL	14144	2023-11-17	2022-01-14	2.48	2.85	2.48	2.5	0.007	0.66	0.0	0.04	17.34	0.01	1.988	8.61	3.98	2.4	97.6	0.0	-1.53	0.89	0.86	4.27	2.5	0.003	0.57	0.0	0.04	17.19	0.00	1.424	7.95	2.10	1.9	98.1	0.0	0.87	4.18	0.91	0.90	3.95	18397	2152	14	44	4	120	0	logfile
✔	6JYL	9718	2023-11-16	2019-04-26	3.37	4.00	—	3.4	0.008	0.85	0.0	0.05	24.45	0.01	2.086	2.75	0.28	4.8	95.0	0.2	-3.67	0.90	0.87	2.92	3.4	0.003	0.58	0.0	0.03	24.47	0.00	1.427	7.57	0.19	4.2	95.8	0.0	1.01	0.56	0.90	0.88	1.98	16136	1265	11	292	3	0	0	logfile
✔	6XH8	22185	2023-11-15	2020-06-18	4.1	4.25	—	3.9	0.012	1.12	0.0	0.06	14.73	0.01	2.006	9.71	0.27	13.7	86.2	0.1	-4.93	0.82	0.73	—	3.9	0.003	0.66	0.0	0.04	15.23	0.00	1.437	14.52	0.03	8.7	91.2	0.1	-2.48	1.27	0.82	0.75	—	65970	3951	14	110	5	0	32621	logfile

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