Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PR5	20457	2023-04-21	2019-07-10	3.3	3.71	—	3.6	0.008	0.78	0.0	0.05	22.82	0.00	1.963	13.80	0.71	1.4	98.3	0.3	-3.27	0.76	0.82	2.68	3.6	0.004	0.62	0.0	0.04	23.49	0.00	1.510	10.60	0.24	5.2	94.8	0.0	0.55	1.15	0.75	0.82	2.45	10194	960	10	124	6	0	0	logfile
✔	7UTD	26767	2023-04-20	2022-04-26	2.19	3.00	2.25	2.5	0.060	2.36	28.0	1.00	15.03	0.02	1.964	8.43	1.36	2.2	97.7	0.1	-0.03	0.71	0.61	3.58	2.6	0.005	1.93	0.0	0.08	15.64	0.00	1.523	16.31	1.27	2.9	97.1	0.0	0.37	1.33	0.88	0.85	3.78	54200	6908	36	0	64	0	0	logfile
✔	7oQY	13034	2023-04-28	2021-06-04	2.61	2.96	2.55	2.9	0.020	0.88	0.0	0.20	13.68	0.00	1.842	4.99	0.00	2.9	97.1	0.0	-0.33	0.67	0.82	3.68	2.9	0.005	0.81	0.0	0.05	16.31	0.00	1.531	4.92	1.06	3.0	97.0	0.0	-0.38	0.30	0.66	0.84	3.47	28032	3535	20	0	10	0	0	logfile
✔	7W7W	32350	2023-04-20	2021-12-06	3.2	2.98	3.22	3.2	0.003	1.16	0.0	0.04	13.44	0.00	2.051	8.21	0.00	2.9	97.1	0.0	0.82	0.59	0.74	2.05	3.2	0.002	0.84	0.0	0.04	15.74	0.00	1.537	8.97	0.23	3.9	96.1	0.0	0.72	0.38	0.58	0.75	1.99	7870	1018	1	0	2	0	0	logfile
✔	7ZDM	14658	2023-04-24	2022-03-29	3.44	3.47	—	3.4	0.006	0.85	1.0	1.03	16.68	0.01	2.195	5.31	0.35	3.8	96.2	0.0	-0.65	0.92	0.89	2.24	3.4	0.009	1.58	0.0	0.31	16.78	0.00	1.551	8.96	0.40	4.1	95.8	0.0	0.60	0.29	0.91	0.88	2.22	67086	8227	64	0	32	0	0	logfile
✔	7ET1	31294	2023-04-25	2021-05-12	2.6	3.09	2.69	3.0	0.007	1.25	0.0	0.05	17.15	0.01	1.936	9.51	0.19	2.7	97.3	0.0	0.57	0.76	0.87	2.95	3.0	0.003	0.77	0.0	0.04	17.12	0.00	1.558	6.57	1.13	1.8	98.2	0.0	1.43	1.02	0.73	0.90	3.05	10015	1249	5	0	14	1	0	logfile
✔	8CVo	27011	2023-04-24	2022-05-18	2.95	3.30	2.96	3.1	0.022	1.08	0.0	0.08	14.96	0.02	2.075	11.01	1.47	5.6	93.7	0.8	0.16	0.83	0.87	2.93	3.1	0.009	1.09	0.0	0.05	16.20	0.01	1.572	13.77	4.55	6.4	93.2	0.3	0.13	1.17	0.84	0.89	2.29	17421	931	11	471	14	0	0	logfile
✔	7TDK	25832	2023-04-23	2021-12-31	3.8	4.07	3.85	3.8	0.004	0.87	0.0	0.04	15.75	0.01	2.210	4.97	0.46	5.7	94.1	0.1	-0.20	0.85	0.77	1.07	3.8	0.051	3.21	71.0	0.14	19.99	0.02	1.573	100.23	3.61	38.4	59.1	2.5	-7.48	2.34	0.89	0.86	1.15	117136	12936	8	0	3616	0	0	logfile
✔	6J3Z	9776	2023-04-28	2019-01-07	3.6	3.78	—	3.6	0.019	1.82	4.0	0.15	17.99	0.01	1.392	13.61	0.28	4.3	95.7	0.0	-5.08	0.80	0.81	3.43	3.6	0.004	0.71	0.0	0.04	17.15	0.00	1.596	14.19	0.59	3.4	96.6	0.0	-0.05	0.75	0.80	0.82	2.53	74619	6984	97	0	978	0	0	logfile
✔	6BWi	7299	2023-04-26	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.09	0.01	1.745	22.56	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.99	124.0	0.27	21.79	0.03	1.600	112.56	5.62	43.9	49.5	6.5	-8.57	2.58	0.80	0.86	2.01	23491	2484	8	0	813	0	0	logfile
✔	6CNo	7539	2023-04-23	2018-03-08	4.7	4.91	—	4.8	0.006	1.03	0.0	0.05	9.24	0.01	1.936	5.57	0.26	3.5	96.5	0.0	-2.70	0.64	0.79	—	4.8	0.033	0.98	0.0	0.05	13.13	0.01	1.609	36.91	0.00	3.0	97.0	0.0	0.18	1.30	0.64	0.79	—	15428	2024	12	0	12	0	0	logfile
✔	7UUR	26801	2023-04-22	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	3.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.007	2.49	0.0	0.07	14.70	0.01	1.611	10.87	0.29	2.1	97.9	0.0	0.19	0.27	0.77	0.88	7.79	13683	1668	12	0	18	603	0	logfile
✔	6T24	10366	2023-04-23	2019-10-07	3.7	3.44	3.63	3.6	0.049	3.18	0.0	0.23	14.36	0.01	2.104	2.74	0.00	0.5	99.5	0.0	0.74	0.68	0.80	2.64	3.5	0.003	1.54	0.0	0.04	17.29	0.00	1.619	16.29	0.32	1.4	98.6	0.0	0.89	1.42	0.69	0.82	2.30	14910	1855	10	0	20	0	0	logfile
✔	6DVZ	8921	2023-04-25	2018-06-25	4.24	4.48	—	4.4	0.008	1.27	0.0	0.06	12.54	0.01	2.265	5.74	0.18	16.6	82.6	0.8	-5.86	0.70	0.80	—	4.4	0.003	0.81	0.0	0.04	13.96	0.00	1.621	12.77	0.00	13.5	86.1	0.4	-2.24	0.88	0.70	0.80	—	20976	2572	8	0	12	0	0	logfile
✔	7ZAH	14580	2023-04-26	2022-03-22	2.7	3.02	2.71	2.8	0.017	0.83	0.0	0.05	14.11	0.06	1.407	3.78	1.24	3.4	96.6	0.0	-0.04	0.88	0.92	4.04	2.8	0.004	1.22	0.0	0.04	15.91	0.01	1.626	5.99	1.18	2.9	97.1	0.0	0.26	0.40	0.88	0.93	3.72	69366	4289	58	1596	70	379	0	logfile
✔	6ZQA	11357	2023-04-26	2020-07-09	4.4	4.48	—	4.4	0.006	1.11	1.0	0.06	14.62	0.01	1.928	5.28	0.00	9.3	90.4	0.3	-3.27	0.77	0.74	—	4.4	0.011	1.41	0.0	0.06	16.91	0.01	1.638	24.83	0.00	20.3	79.5	0.2	-3.96	1.34	0.76	0.75	—	125991	19047	63	1485	5	0	0	logfile
✔	6VFi	21173	2023-04-21	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.53	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	4.5	0.003	0.69	0.0	0.04	13.66	0.00	1.654	28.86	0.00	2.9	97.1	0.0	1.43	2.11	0.80	0.80	—	58488	7560	48	0	0	0	0	logfile
✔	7TDi	25830	2023-04-23	2021-12-31	3.3	3.81	3.62	3.6	0.005	0.81	0.0	0.04	16.22	0.01	2.159	4.24	0.85	4.4	95.5	0.1	-0.18	0.82	0.72	0.41	3.6	0.060	3.45	153.0	0.17	19.75	0.02	1.655	78.91	3.69	33.8	63.9	2.3	-7.06	1.45	0.89	0.87	1.83	117132	12936	8	0	3616	0	0	logfile
✔	6Z1U	11040	2023-04-23	2020-05-14	3.47	3.57	3.25	3.5	0.008	0.74	0.0	0.05	14.81	0.00	1.905	11.83	0.00	8.9	91.1	0.0	-1.62	0.68	0.83	2.33	3.5	0.006	0.58	0.0	0.04	15.72	0.00	1.662	9.48	0.06	6.5	93.5	0.0	-0.44	0.37	0.68	0.85	2.15	65073	4239	32	0	11	17	32803	logfile
✔	7PWG	13681	2023-04-20	2021-10-06	2.75	2.35	—	2.5	0.010	1.07	0.0	0.06	16.06	0.02	1.376	3.78	6.08	4.4	95.6	0.0	-2.19	0.76	0.88	4.64	2.5	0.007	0.93	0.0	0.05	16.61	0.01	1.664	4.15	3.60	3.8	96.2	0.0	-0.54	0.30	0.77	0.88	4.03	109151	5769	105	2722	294	4397	0	logfile

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