Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6LN9	0928	2023-07-04	2019-12-28	3.4	3.61	3.06	3.6	0.003	0.54	0.0	0.04	12.32	0.00	2.075	7.70	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.003	0.60	0.0	0.04	14.72	0.00	1.333	10.18	0.00	4.3	95.7	0.0	-0.24	0.52	0.62	0.75	1.21	7612	987	1	0	2	0	0	logfile
✔	5MMJ	3532	2023-07-04	2016-12-10	3.6	3.88	—	3.6	0.008	1.15	0.0	0.05	16.66	0.01	1.774	10.61	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.005	0.71	0.0	0.04	16.28	0.01	1.334	19.32	1.26	5.4	94.4	0.1	-0.53	1.60	0.91	0.85	1.05	55315	2806	31	1484	359	0	0	logfile
✔	5Li0	4050	2023-07-16	2016-07-13	3.8	3.91	—	3.8	0.014	1.18	1.0	0.05	14.64	0.01	1.920	5.40	0.20	14.9	84.7	0.5	-5.64	0.75	0.79	1.99	3.8	0.006	0.75	0.0	0.04	15.26	0.00	1.344	14.34	0.77	11.1	88.8	0.1	-2.61	0.71	0.75	0.81	1.15	140825	5396	58	4575	41	162	0	logfile
✔	7LEZ	23295	2023-07-13	2021-01-15	4.15	2.14	4.23	3.9	0.007	1.20	0.0	0.06	10.28	0.01	1.255	11.76	0.91	10.1	89.2	0.7	-4.35	0.77	0.65	—	3.9	0.004	0.85	0.0	0.05	11.82	0.01	1.347	22.59	0.00	10.7	89.2	0.2	-1.86	1.82	0.78	0.66	—	27794	3654	20	0	12	0	0	logfile
✔	7K0S	22615	2023-07-06	2020-09-05	4.5	4.73	4.68	4.6	0.003	0.64	2.0	0.04	13.91	0.00	2.069	9.69	0.95	7.8	92.0	0.2	-0.12	0.80	0.73	—	4.6	0.043	3.18	225.0	0.13	17.01	0.02	1.355	135.88	0.00	44.3	52.4	3.3	-7.51	2.27	0.84	0.82	—	115935	12896	8	0	3557	0	0	logfile
✔	7AM2	11821	2023-07-15	2020-10-07	3.4	3.52	—	3.4	0.009	0.95	43.0	0.07	20.01	0.01	1.157	23.90	8.65	15.0	84.3	0.7	-5.47	0.64	0.76	1.98	3.4	0.007	0.82	1.0	0.05	19.90	0.01	1.363	20.07	0.72	12.6	87.2	0.2	-3.08	1.82	0.64	0.78	1.80	139523	15384	80	839	42	0	0	logfile
✔	7LF1	23297	2023-07-16	2021-01-15	4.04	4.49	4.10	4.2	0.006	1.07	0.0	0.06	9.39	0.01	1.592	12.06	0.16	12.9	86.7	0.4	-4.16	0.83	0.66	—	4.2	0.003	0.79	0.0	0.05	11.02	0.01	1.369	21.17	0.00	11.4	88.5	0.1	-2.15	1.32	0.86	0.75	—	34518	4548	24	0	12	0	0	logfile
✔	7LF2	23298	2023-07-15	2021-01-15	3.72	4.26	3.84	4.0	0.007	1.03	0.0	0.06	9.01	0.01	0.855	11.53	0.16	11.0	88.9	0.1	-4.07	0.80	0.70	1.81	4.0	0.004	0.76	0.0	0.05	12.61	0.00	1.374	21.01	0.27	9.9	90.0	0.1	-2.03	2.49	0.81	0.73	1.81	33798	4452	24	0	12	0	0	logfile
✔	8ADG	15362	2023-07-11	2022-07-08	3.0	3.31	3.06	3.3	0.006	0.62	0.0	0.04	14.03	0.00	1.941	3.67	0.00	4.0	96.0	0.0	0.24	0.64	0.82	3.73	3.3	0.003	0.51	0.0	0.04	15.23	0.00	1.375	3.11	1.11	4.0	96.0	0.0	0.35	0.90	0.60	0.83	3.53	23183	1506	6	0	0	0	11375	logfile
✔	6RiE	4890	2023-07-19	2019-04-23	3.1	3.16	2.97	3.1	0.006	0.76	0.0	0.05	15.00	0.01	2.067	4.42	0.07	4.2	95.8	0.0	-3.21	0.80	0.85	3.51	3.1	0.004	0.57	0.0	0.04	16.06	0.00	1.376	8.21	0.30	3.4	96.6	0.0	-0.05	0.40	0.82	0.87	3.15	36583	4418	17	41	7	0	0	logfile
✔	6LN8	0927	2023-07-04	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.003	0.54	0.0	0.04	15.08	0.00	1.381	9.56	0.12	3.1	96.9	0.0	0.11	0.48	0.69	0.82	1.70	7739	1003	1	0	2	0	0	logfile
✔	8ESW	28581	2023-07-07	2022-10-15	3.3	3.67	3.46	3.7	0.006	1.01	0.0	1.05	16.05	0.01	1.932	5.33	0.63	3.0	97.0	0.0	-2.36	0.74	0.83	2.53	3.6	0.008	1.59	0.0	0.31	16.59	0.00	1.384	8.96	0.26	2.8	97.2	0.0	0.85	0.36	0.75	0.87	2.27	66555	8036	64	0	76	0	0	logfile
✔	6YJ4	10815	2023-07-07	2020-04-02	2.7	2.35	2.73	2.6	0.011	1.10	0.0	0.65	14.88	0.01	2.031	2.88	0.03	4.1	95.8	0.0	-2.17	0.58	0.79	4.22	2.6	0.005	1.02	0.0	0.18	16.77	0.00	1.387	7.10	1.40	3.4	96.6	0.0	0.78	0.57	0.63	0.84	3.70	66311	8126	94	0	50	275	0	logfile
✔	7SLQ	25198	2023-07-03	2021-10-24	3.7	3.95	—	3.9	0.011	1.16	1.0	0.06	14.97	0.01	2.144	6.53	1.35	3.7	96.3	0.0	-2.83	0.74	0.70	2.35	3.9	0.002	0.58	0.0	0.04	16.03	0.01	1.388	8.68	0.22	5.1	94.9	0.0	0.17	1.30	0.75	0.72	1.87	5451	559	4	50	1	0	0	logfile
✔	7oP8	13014	2023-07-04	2021-05-31	3.5	3.85	—	3.8	0.004	0.86	0.0	0.05	14.44	0.01	1.950	6.41	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	3.8	0.003	0.63	0.0	0.04	16.12	0.00	1.389	10.40	0.21	6.2	93.8	0.0	-0.75	1.73	0.66	0.78	0.83	8872	1118	1	0	2	0	0	logfile
✔	3JCD	6549	2023-07-22	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.63	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.005	1.16	0.0	0.06	20.49	0.01	1.400	48.65	0.88	15.2	83.4	1.3	-4.28	2.51	0.71	0.42	0.16	147815	5982	57	4715	0	0	0	logfile
✔	6FKi	4272	2023-07-17	2018-01-24	4.3	4.39	4.31	4.3	0.015	1.42	28.0	0.09	11.86	0.01	0.201	58.71	0.15	3.9	96.0	0.1	-0.17	0.63	0.65	—	4.3	0.007	0.94	9.0	0.06	13.87	0.01	1.403	24.57	0.05	4.3	95.6	0.1	-0.38	1.28	0.69	0.78	—	39231	5201	31	0	10	0	0	logfile
✔	6XH8	22185	2023-07-07	2020-06-18	4.1	4.25	—	3.9	0.012	1.12	0.0	0.06	14.73	0.01	2.006	9.71	0.27	13.7	86.2	0.1	-4.93	0.82	0.73	—	3.9	0.003	0.64	0.0	0.04	15.25	0.00	1.412	12.88	0.03	8.0	91.9	0.1	-2.13	1.27	0.81	0.75	—	65970	3951	14	110	5	0	32621	logfile
✔	6oiG	20077	2023-07-10	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.69	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.010	1.00	6.0	0.05	18.66	0.01	1.416	32.12	0.74	13.7	86.2	0.1	-2.80	3.10	0.89	0.86	0.08	129140	6757	48	3522	116	0	0	logfile
✔	7B5K	12035	2023-07-23	2020-12-03	2.9	2.60	2.95	2.8	0.006	0.91	0.0	0.05	14.16	0.02	1.504	11.12	0.45	3.9	95.9	0.1	-3.45	0.76	0.80	3.32	2.8	0.006	0.77	0.0	0.05	15.11	0.01	1.421	6.82	2.74	4.8	95.1	0.1	-0.71	0.42	0.78	0.83	2.91	148576	5684	80	4790	362	854	0	logfile

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