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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6FTi | 4316 | 2024-03-02 | 2018-02-22 | 4.2 | 4.31 | — | 4.2 | 0.011 | 1.38 | 18.0 | 0.10 | 25.55 | 0.01 | 0.284 | 12.03 | 11.77 | 9.7 | 87.9 | 2.4 | -4.07 | 0.61 | 0.61 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.04 | 24.07 | 0.01 | 1.148 | 24.17 | 0.06 | 8.2 | 91.2 | 0.5 | -1.60 | 1.00 | 0.63 | 0.66 | — | 153850 | 8349 | 76 | 4014 | 399 | 0 | 0 | logfile |
✔ | 6U2W | 20627 | 2024-03-15 | 2019-08-20 | 3.63 | 3.62 | 3.94 | 3.9 | 0.005 | 0.86 | 0.0 | 0.05 | 14.98 | 0.01 | 2.317 | 3.58 | 13.21 | 13.3 | 86.7 | 0.0 | -5.16 | 0.74 | 0.82 | 1.66 | 3.7 | 0.004 | 0.83 | 0.0 | 0.05 | 16.28 | 0.00 | 1.148 | 9.85 | 8.22 | 12.6 | 87.4 | 0.0 | -2.91 | 0.55 | 0.71 | 0.81 | 1.28 | 68448 | 8704 | 48 | 0 | 64 | 0 | 0 | logfile |
✔ | 7SFR | 25100 | 2024-03-20 | 2021-10-04 | 2.6 | 3.25 | 2.54 | 2.3 | 0.006 | 0.59 | 0.0 | 0.04 | 23.57 | 0.01 | 1.286 | 9.92 | 2.44 | 6.0 | 93.8 | 0.2 | -0.01 | 0.86 | 0.84 | 2.76 | 2.3 | 0.006 | 0.62 | 0.0 | 0.04 | 23.14 | 0.01 | 1.149 | 10.54 | 3.68 | 6.3 | 93.6 | 0.1 | 0.00 | 0.29 | 0.87 | 0.86 | 2.72 | 143665 | 5261 | 66 | 4752 | 454 | 0 | 0 | logfile |
✔ | 7YLW | 33919 | 2024-03-15 | 2022-07-27 | 3.39 | 2.63 | 3.52 | 3.0 | 0.008 | 1.04 | 31.0 | 0.07 | 11.34 | 0.01 | 1.306 | 5.69 | 1.53 | 4.1 | 95.5 | 0.4 | -3.65 | 0.69 | 0.68 | 0.71 | 3.0 | 0.004 | 0.77 | 0.0 | 0.04 | 16.65 | 0.00 | 1.155 | 14.09 | 4.29 | 4.7 | 95.3 | 0.0 | -0.10 | 0.95 | 0.77 | 0.78 | 1.37 | 70338 | 9105 | 49 | 0 | 47 | 14 | 0 | logfile |
✔ | 7N0C | 24103 | 2024-03-10 | 2021-05-25 | 3.4 | 3.71 | — | 3.7 | 0.009 | 1.00 | 0.0 | 0.05 | 16.67 | 0.01 | 2.180 | 6.79 | 0.00 | 1.3 | 98.7 | 0.0 | -3.80 | 0.72 | 0.80 | 2.48 | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 17.09 | 0.00 | 1.158 | 9.83 | 2.89 | 4.7 | 95.3 | 0.0 | -1.28 | 1.16 | 0.71 | 0.80 | 1.89 | 6088 | 644 | 6 | 49 | 7 | 1 | 0 | logfile |
✔ | 5GAH | 8004 | 2024-03-19 | 2015-11-26 | 3.8 | 3.97 | — | 3.9 | 0.008 | 1.10 | 0.0 | 0.05 | 23.75 | 0.01 | 1.737 | 8.30 | 11.31 | 3.3 | 96.7 | 0.1 | -3.33 | 0.73 | 0.85 | 1.12 | 3.9 | 0.006 | 0.67 | 0.0 | 0.04 | 22.93 | 0.01 | 1.161 | 14.34 | 6.31 | 4.3 | 95.6 | 0.1 | -0.67 | 1.15 | 0.74 | 0.87 | 1.44 | 94027 | 3595 | 46 | 3049 | 473 | 0 | 0 | logfile |
✔ | 8SHP | 40491 | 2024-03-15 | 2023-04-14 | 3.0 | 3.53 | 3.00 | 3.3 | 0.005 | 0.55 | 0.0 | 0.04 | 14.05 | 0.00 | 1.905 | 7.29 | 0.00 | 3.7 | 96.3 | 0.0 | 1.58 | 0.85 | 0.88 | 2.71 | 3.3 | 0.003 | 0.55 | 0.0 | 0.04 | 15.40 | 0.00 | 1.162 | 7.49 | 0.87 | 3.6 | 96.4 | 0.0 | 1.44 | 0.26 | 0.84 | 0.87 | 2.46 | 68049 | 8834 | 50 | 0 | 48 | 19 | 0 | logfile |
✔ | 7UPH | 26666 | 2024-03-19 | 2022-04-15 | 4.18 | 5.35 | 4.33 | 4.2 | 0.007 | 1.00 | 1.0 | 0.05 | 25.16 | 0.02 | 1.193 | 122.79 | 0.02 | 12.5 | 86.5 | 1.0 | -2.90 | 0.63 | 0.35 | — | 4.3 | 0.008 | 1.04 | 1.0 | 0.05 | 24.74 | 0.01 | 1.163 | 125.76 | 0.02 | 16.1 | 83.1 | 0.8 | -3.10 | 1.33 | 0.87 | 0.78 | — | 141080 | 5442 | 49 | 4556 | 0 | 0 | 625 | logfile |
✔ | 6TPQ | 10543 | 2024-03-19 | 2019-12-13 | 3.07 | 4.01 | — | 3.3 | 0.008 | 0.68 | 0.0 | 0.04 | 23.63 | 0.00 | 1.176 | 12.58 | 0.04 | 9.5 | 90.5 | 0.0 | -4.14 | 0.92 | 0.90 | 2.30 | 3.3 | 0.006 | 0.66 | 1.0 | 0.04 | 23.40 | 0.00 | 1.163 | 11.57 | 3.54 | 6.4 | 93.6 | 0.0 | -1.68 | 0.33 | 0.92 | 0.91 | 1.78 | 91728 | 3346 | 39 | 3047 | 222 | 0 | 0 | logfile |
✔ | 8SHo | 40490 | 2024-03-14 | 2023-04-14 | 3.0 | 3.47 | 3.07 | 3.3 | 0.006 | 0.57 | 0.0 | 0.04 | 14.70 | 0.00 | 1.924 | 7.41 | 0.01 | 3.8 | 96.2 | 0.0 | 1.54 | 0.83 | 0.88 | 2.71 | 3.3 | 0.005 | 0.61 | 0.0 | 0.04 | 15.62 | 0.00 | 1.165 | 7.90 | 0.94 | 4.1 | 95.9 | 0.0 | 1.23 | 1.08 | 0.83 | 0.89 | 2.51 | 67725 | 8791 | 50 | 0 | 48 | 19 | 0 | logfile |
✔ | 7QH7 | 13967 | 2024-03-18 | 2021-12-10 | 2.89 | 4.42 | — | 2.2 | 0.007 | 0.72 | 0.0 | 0.04 | 19.37 | 0.00 | 1.147 | 6.45 | 3.11 | 7.6 | 92.3 | 0.1 | -1.65 | 0.66 | 0.59 | 2.10 | 2.3 | 0.003 | 0.74 | 0.0 | 0.04 | 19.71 | 0.00 | 1.173 | 15.43 | 1.93 | 5.2 | 94.8 | 0.0 | -0.34 | 0.70 | 0.89 | 0.85 | 1.63 | 85397 | 7017 | 59 | 1312 | 53 | 14 | 0 | logfile |
✔ | 7NWT | 12635 | 2024-03-26 | 2021-03-17 | 2.66 | 2.63 | — | 2.6 | 0.011 | 0.84 | 0.0 | 0.05 | 22.59 | 0.02 | 1.145 | 4.87 | 2.95 | 2.6 | 97.4 | 0.0 | -2.35 | 0.85 | 0.88 | 4.38 | 2.7 | 0.002 | 0.59 | 0.0 | 0.03 | 22.65 | 0.01 | 1.177 | 7.32 | 3.20 | 2.8 | 97.2 | 0.0 | 0.27 | 0.30 | 0.87 | 0.88 | 3.41 | 149932 | 6355 | 74 | 4641 | 439 | 2 | 0 | logfile |
✔ | 7QV9 | 14171 | 2024-03-24 | 2022-01-20 | 3.5 | 3.56 | — | 3.5 | 0.021 | 2.21 | 183.0 | 0.13 | 14.79 | 0.01 | 1.898 | 37.15 | 10.34 | 8.2 | 90.5 | 1.3 | -2.97 | 0.78 | 0.71 | 1.18 | 3.4 | 0.003 | 0.75 | 0.0 | 0.04 | 16.63 | 0.00 | 1.180 | 11.66 | 2.85 | 7.9 | 92.0 | 0.1 | -1.36 | 1.81 | 0.78 | 0.71 | 1.10 | 41491 | 5245 | 19 | 72 | 9 | 0 | 0 | logfile |
✔ | 7EN1 | 31199 | 2024-03-24 | 2021-04-15 | 3.47 | 3.85 | 3.42 | 3.6 | 0.013 | 1.97 | 7.0 | 0.10 | 15.11 | 0.02 | 1.796 | 0.83 | 1.72 | 5.2 | 94.6 | 0.3 | -2.33 | 0.86 | 0.77 | 2.39 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 15.24 | 0.00 | 1.187 | 12.48 | 0.94 | 4.7 | 95.3 | 0.0 | 0.04 | 0.79 | 0.86 | 0.80 | 2.03 | 40862 | 2656 | 4 | 0 | 8 | 0 | 20419 | logfile |
✔ | 7KSo | 23021 | 2024-03-15 | 2020-11-23 | 3.9 | 4.08 | — | 4.0 | 0.004 | 0.73 | 1.0 | 0.05 | 11.73 | 0.00 | 2.151 | 3.83 | 0.29 | 4.7 | 95.3 | 0.0 | -3.99 | 0.68 | 0.74 | 1.12 | 4.0 | 0.004 | 0.70 | 0.0 | 0.05 | 15.60 | 0.00 | 1.190 | 12.41 | 2.95 | 5.7 | 94.3 | 0.0 | -1.25 | 1.52 | 0.73 | 0.81 | 1.66 | 13075 | 1690 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7FDG | 31542 | 2024-03-11 | 2021-07-16 | 3.69 | 4.43 | — | 4.3 | 0.007 | 0.85 | 0.0 | 0.05 | 16.00 | 0.01 | 2.061 | 23.62 | 0.29 | 7.4 | 92.6 | 0.0 | -3.38 | 0.59 | 0.78 | 1.13 | 4.3 | 0.007 | 1.19 | 0.0 | 0.05 | 17.48 | 0.01 | 1.193 | 24.33 | 3.20 | 4.8 | 95.2 | 0.0 | -0.33 | 0.71 | 0.57 | 0.75 | 1.29 | 6459 | 791 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 8iWS | 35778 | 2024-03-11 | 2023-03-31 | 3.42 | 3.63 | 3.46 | 3.7 | 0.003 | 0.65 | 2.0 | 0.04 | 16.82 | 0.00 | 1.757 | 7.59 | 0.92 | 4.4 | 95.6 | 0.0 | 2.06 | 0.67 | 0.75 | 1.15 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 17.70 | 0.00 | 1.194 | 10.77 | 3.27 | 5.4 | 94.6 | 0.0 | 0.47 | 0.68 | 0.71 | 0.84 | 2.02 | 6809 | 890 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 7S6C | 24868 | 2024-03-12 | 2021-09-13 | 3.1 | 3.69 | — | 3.3 | 0.005 | 0.74 | 0.0 | 0.04 | 14.16 | 0.01 | 2.068 | 4.24 | 0.00 | 4.0 | 96.0 | 0.0 | -0.30 | 0.82 | 0.76 | 2.85 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 14.95 | 0.00 | 1.196 | 8.99 | 0.60 | 4.2 | 95.8 | 0.0 | 0.08 | 0.33 | 0.84 | 0.80 | 2.88 | 47369 | 3190 | 10 | 0 | 2 | 0 | 23420 | logfile |
✔ | 8UCV | 42141 | 2024-03-17 | 2023-09-27 | 3.81 | 4.82 | 3.48 | 2.6 | 0.008 | 0.60 | 0.0 | 0.04 | 20.56 | 0.00 | 1.901 | 4.71 | 0.00 | 3.2 | 96.8 | 0.0 | 1.47 | 0.84 | 0.74 | 0.31 | 2.6 | 0.002 | 0.56 | 0.0 | 0.04 | 20.31 | 0.00 | 1.197 | 7.96 | 1.27 | 2.4 | 97.6 | 0.0 | 1.57 | 2.32 | 0.86 | 0.80 | 0.67 | 19076 | 1054 | 7 | 64 | 5 | 0 | 9226 | logfile |
✔ | 8G7U | 29824 | 2024-03-16 | 2023-02-17 | 4.0 | 4.17 | 3.95 | 4.0 | 0.009 | 0.95 | 0.0 | 0.06 | 17.29 | 0.01 | 2.056 | 8.67 | 0.61 | 7.2 | 92.8 | 0.0 | -3.99 | 0.78 | 0.75 | — | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 18.12 | 0.00 | 1.197 | 13.37 | 3.33 | 8.8 | 91.2 | 0.0 | -1.05 | 1.03 | 0.78 | 0.76 | — | 14229 | 1634 | 8 | 46 | 4 | 0 | 0 | logfile |