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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6LN9 | 0928 | 2023-07-04 | 2019-12-28 | 3.4 | 3.61 | 3.06 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 12.32 | 0.00 | 2.075 | 7.70 | 0.00 | 4.1 | 95.9 | 0.0 | -3.36 | 0.63 | 0.73 | 1.41 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.72 | 0.00 | 1.333 | 10.18 | 0.00 | 4.3 | 95.7 | 0.0 | -0.24 | 0.52 | 0.62 | 0.75 | 1.21 | 7612 | 987 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 5MMJ | 3532 | 2023-07-04 | 2016-12-10 | 3.6 | 3.88 | — | 3.6 | 0.008 | 1.15 | 0.0 | 0.05 | 16.66 | 0.01 | 1.774 | 10.61 | 7.28 | 4.9 | 94.8 | 0.3 | -3.46 | 0.92 | 0.86 | 1.28 | 3.6 | 0.005 | 0.71 | 0.0 | 0.04 | 16.28 | 0.01 | 1.334 | 19.32 | 1.26 | 5.4 | 94.4 | 0.1 | -0.53 | 1.60 | 0.91 | 0.85 | 1.05 | 55315 | 2806 | 31 | 1484 | 359 | 0 | 0 | logfile |
✔ | 5Li0 | 4050 | 2023-07-16 | 2016-07-13 | 3.8 | 3.91 | — | 3.8 | 0.014 | 1.18 | 1.0 | 0.05 | 14.64 | 0.01 | 1.920 | 5.40 | 0.20 | 14.9 | 84.7 | 0.5 | -5.64 | 0.75 | 0.79 | 1.99 | 3.8 | 0.006 | 0.75 | 0.0 | 0.04 | 15.26 | 0.00 | 1.344 | 14.34 | 0.77 | 11.1 | 88.8 | 0.1 | -2.61 | 0.71 | 0.75 | 0.81 | 1.15 | 140825 | 5396 | 58 | 4575 | 41 | 162 | 0 | logfile |
✔ | 7LEZ | 23295 | 2023-07-13 | 2021-01-15 | 4.15 | 2.14 | 4.23 | 3.9 | 0.007 | 1.20 | 0.0 | 0.06 | 10.28 | 0.01 | 1.255 | 11.76 | 0.91 | 10.1 | 89.2 | 0.7 | -4.35 | 0.77 | 0.65 | — | 3.9 | 0.004 | 0.85 | 0.0 | 0.05 | 11.82 | 0.01 | 1.347 | 22.59 | 0.00 | 10.7 | 89.2 | 0.2 | -1.86 | 1.82 | 0.78 | 0.66 | — | 27794 | 3654 | 20 | 0 | 12 | 0 | 0 | logfile |
✔ | 7K0S | 22615 | 2023-07-06 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 13.91 | 0.00 | 2.069 | 9.69 | 0.95 | 7.8 | 92.0 | 0.2 | -0.12 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.18 | 225.0 | 0.13 | 17.01 | 0.02 | 1.355 | 135.88 | 0.00 | 44.3 | 52.4 | 3.3 | -7.51 | 2.27 | 0.84 | 0.82 | — | 115935 | 12896 | 8 | 0 | 3557 | 0 | 0 | logfile |
✔ | 7AM2 | 11821 | 2023-07-15 | 2020-10-07 | 3.4 | 3.52 | — | 3.4 | 0.009 | 0.95 | 43.0 | 0.07 | 20.01 | 0.01 | 1.157 | 23.90 | 8.65 | 15.0 | 84.3 | 0.7 | -5.47 | 0.64 | 0.76 | 1.98 | 3.4 | 0.007 | 0.82 | 1.0 | 0.05 | 19.90 | 0.01 | 1.363 | 20.07 | 0.72 | 12.6 | 87.2 | 0.2 | -3.08 | 1.82 | 0.64 | 0.78 | 1.80 | 139523 | 15384 | 80 | 839 | 42 | 0 | 0 | logfile |
✔ | 7LF1 | 23297 | 2023-07-16 | 2021-01-15 | 4.04 | 4.49 | 4.10 | 4.2 | 0.006 | 1.07 | 0.0 | 0.06 | 9.39 | 0.01 | 1.592 | 12.06 | 0.16 | 12.9 | 86.7 | 0.4 | -4.16 | 0.83 | 0.66 | — | 4.2 | 0.003 | 0.79 | 0.0 | 0.05 | 11.02 | 0.01 | 1.369 | 21.17 | 0.00 | 11.4 | 88.5 | 0.1 | -2.15 | 1.32 | 0.86 | 0.75 | — | 34518 | 4548 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 7LF2 | 23298 | 2023-07-15 | 2021-01-15 | 3.72 | 4.26 | 3.84 | 4.0 | 0.007 | 1.03 | 0.0 | 0.06 | 9.01 | 0.01 | 0.855 | 11.53 | 0.16 | 11.0 | 88.9 | 0.1 | -4.07 | 0.80 | 0.70 | 1.81 | 4.0 | 0.004 | 0.76 | 0.0 | 0.05 | 12.61 | 0.00 | 1.374 | 21.01 | 0.27 | 9.9 | 90.0 | 0.1 | -2.03 | 2.49 | 0.81 | 0.73 | 1.81 | 33798 | 4452 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 8ADG | 15362 | 2023-07-11 | 2022-07-08 | 3.0 | 3.31 | 3.06 | 3.3 | 0.006 | 0.62 | 0.0 | 0.04 | 14.03 | 0.00 | 1.941 | 3.67 | 0.00 | 4.0 | 96.0 | 0.0 | 0.24 | 0.64 | 0.82 | 3.73 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 15.23 | 0.00 | 1.375 | 3.11 | 1.11 | 4.0 | 96.0 | 0.0 | 0.35 | 0.90 | 0.60 | 0.83 | 3.53 | 23183 | 1506 | 6 | 0 | 0 | 0 | 11375 | logfile |
✔ | 6RiE | 4890 | 2023-07-19 | 2019-04-23 | 3.1 | 3.16 | 2.97 | 3.1 | 0.006 | 0.76 | 0.0 | 0.05 | 15.00 | 0.01 | 2.067 | 4.42 | 0.07 | 4.2 | 95.8 | 0.0 | -3.21 | 0.80 | 0.85 | 3.51 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 16.06 | 0.00 | 1.376 | 8.21 | 0.30 | 3.4 | 96.6 | 0.0 | -0.05 | 0.40 | 0.82 | 0.87 | 3.15 | 36583 | 4418 | 17 | 41 | 7 | 0 | 0 | logfile |
✔ | 6LN8 | 0927 | 2023-07-04 | 2019-12-28 | 3.1 | 3.26 | 3.33 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 12.81 | 0.00 | 2.051 | 6.74 | 0.00 | 3.0 | 97.0 | 0.0 | -2.71 | 0.70 | 0.80 | 2.37 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 15.08 | 0.00 | 1.381 | 9.56 | 0.12 | 3.1 | 96.9 | 0.0 | 0.11 | 0.48 | 0.69 | 0.82 | 1.70 | 7739 | 1003 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8ESW | 28581 | 2023-07-07 | 2022-10-15 | 3.3 | 3.67 | 3.46 | 3.7 | 0.006 | 1.01 | 0.0 | 1.05 | 16.05 | 0.01 | 1.932 | 5.33 | 0.63 | 3.0 | 97.0 | 0.0 | -2.36 | 0.74 | 0.83 | 2.53 | 3.6 | 0.008 | 1.59 | 0.0 | 0.31 | 16.59 | 0.00 | 1.384 | 8.96 | 0.26 | 2.8 | 97.2 | 0.0 | 0.85 | 0.36 | 0.75 | 0.87 | 2.27 | 66555 | 8036 | 64 | 0 | 76 | 0 | 0 | logfile |
✔ | 6YJ4 | 10815 | 2023-07-07 | 2020-04-02 | 2.7 | 2.35 | 2.73 | 2.6 | 0.011 | 1.10 | 0.0 | 0.65 | 14.88 | 0.01 | 2.031 | 2.88 | 0.03 | 4.1 | 95.8 | 0.0 | -2.17 | 0.58 | 0.79 | 4.22 | 2.6 | 0.005 | 1.02 | 0.0 | 0.18 | 16.77 | 0.00 | 1.387 | 7.10 | 1.40 | 3.4 | 96.6 | 0.0 | 0.78 | 0.57 | 0.63 | 0.84 | 3.70 | 66311 | 8126 | 94 | 0 | 50 | 275 | 0 | logfile |
✔ | 7SLQ | 25198 | 2023-07-03 | 2021-10-24 | 3.7 | 3.95 | — | 3.9 | 0.011 | 1.16 | 1.0 | 0.06 | 14.97 | 0.01 | 2.144 | 6.53 | 1.35 | 3.7 | 96.3 | 0.0 | -2.83 | 0.74 | 0.70 | 2.35 | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 16.03 | 0.01 | 1.388 | 8.68 | 0.22 | 5.1 | 94.9 | 0.0 | 0.17 | 1.30 | 0.75 | 0.72 | 1.87 | 5451 | 559 | 4 | 50 | 1 | 0 | 0 | logfile |
✔ | 7oP8 | 13014 | 2023-07-04 | 2021-05-31 | 3.5 | 3.85 | — | 3.8 | 0.004 | 0.86 | 0.0 | 0.05 | 14.44 | 0.01 | 1.950 | 6.41 | 0.00 | 5.6 | 94.4 | 0.0 | -1.73 | 0.66 | 0.77 | 1.18 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.12 | 0.00 | 1.389 | 10.40 | 0.21 | 6.2 | 93.8 | 0.0 | -0.75 | 1.73 | 0.66 | 0.78 | 0.83 | 8872 | 1118 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 3JCD | 6549 | 2023-07-22 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 14.69 | 0.00 | 1.289 | 14.63 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.005 | 1.16 | 0.0 | 0.06 | 20.49 | 0.01 | 1.400 | 48.65 | 0.88 | 15.2 | 83.4 | 1.3 | -4.28 | 2.51 | 0.71 | 0.42 | 0.16 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 6FKi | 4272 | 2023-07-17 | 2018-01-24 | 4.3 | 4.39 | 4.31 | 4.3 | 0.015 | 1.42 | 28.0 | 0.09 | 11.86 | 0.01 | 0.201 | 58.71 | 0.15 | 3.9 | 96.0 | 0.1 | -0.17 | 0.63 | 0.65 | — | 4.3 | 0.007 | 0.94 | 9.0 | 0.06 | 13.87 | 0.01 | 1.403 | 24.57 | 0.05 | 4.3 | 95.6 | 0.1 | -0.38 | 1.28 | 0.69 | 0.78 | — | 39231 | 5201 | 31 | 0 | 10 | 0 | 0 | logfile |
✔ | 6XH8 | 22185 | 2023-07-07 | 2020-06-18 | 4.1 | 4.25 | — | 3.9 | 0.012 | 1.12 | 0.0 | 0.06 | 14.73 | 0.01 | 2.006 | 9.71 | 0.27 | 13.7 | 86.2 | 0.1 | -4.93 | 0.82 | 0.73 | — | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 15.25 | 0.00 | 1.412 | 12.88 | 0.03 | 8.0 | 91.9 | 0.1 | -2.13 | 1.27 | 0.81 | 0.75 | — | 65970 | 3951 | 14 | 110 | 5 | 0 | 32621 | logfile |
✔ | 6oiG | 20077 | 2023-07-10 | 2019-04-09 | 3.8 | 5.08 | — | 5.0 | 0.011 | 1.45 | 2.0 | 0.07 | 19.62 | 0.01 | 0.087 | 53.69 | 1.20 | 15.9 | 83.9 | 0.2 | -5.09 | 0.77 | 0.48 | 0.04 | 4.9 | 0.010 | 1.00 | 6.0 | 0.05 | 18.66 | 0.01 | 1.416 | 32.12 | 0.74 | 13.7 | 86.2 | 0.1 | -2.80 | 3.10 | 0.89 | 0.86 | 0.08 | 129140 | 6757 | 48 | 3522 | 116 | 0 | 0 | logfile |
✔ | 7B5K | 12035 | 2023-07-23 | 2020-12-03 | 2.9 | 2.60 | 2.95 | 2.8 | 0.006 | 0.91 | 0.0 | 0.05 | 14.16 | 0.02 | 1.504 | 11.12 | 0.45 | 3.9 | 95.9 | 0.1 | -3.45 | 0.76 | 0.80 | 3.32 | 2.8 | 0.006 | 0.77 | 0.0 | 0.05 | 15.11 | 0.01 | 1.421 | 6.82 | 2.74 | 4.8 | 95.1 | 0.1 | -0.71 | 0.42 | 0.78 | 0.83 | 2.91 | 148576 | 5684 | 80 | 4790 | 362 | 854 | 0 | logfile |