Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SLQ	25198	2023-08-09	2021-10-24	3.7	3.95	—	3.9	0.011	1.16	1.0	0.06	14.97	0.01	2.144	6.53	1.35	3.7	96.3	0.0	-2.83	0.74	0.70	2.35	3.9	0.002	0.58	0.0	0.04	16.03	0.01	1.388	8.68	0.22	5.1	94.9	0.0	0.17	1.30	0.75	0.72	1.87	5451	559	4	50	1	0	0	logfile
✔	7oP8	13014	2023-08-10	2021-05-31	3.5	3.85	—	3.8	0.004	0.86	0.0	0.05	14.44	0.01	1.950	6.41	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	3.8	0.003	0.63	0.0	0.04	16.12	0.00	1.389	10.40	0.21	6.2	93.8	0.0	-0.75	1.73	0.66	0.78	0.83	8872	1118	1	0	2	0	0	logfile
✔	3JCD	6549	2023-08-31	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.63	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.005	1.16	0.0	0.06	20.49	0.01	1.400	48.65	0.88	15.2	83.4	1.3	-4.28	2.51	0.71	0.42	0.16	147815	5982	57	4715	0	0	0	logfile
✔	6FKi	4272	2023-08-24	2018-01-24	4.3	4.39	4.31	4.3	0.015	1.42	28.0	0.09	11.86	0.01	0.201	58.71	0.15	3.9	96.0	0.1	-0.17	0.63	0.65	—	4.3	0.007	0.94	9.0	0.06	13.87	0.01	1.403	24.57	0.05	4.3	95.6	0.1	-0.38	1.28	0.69	0.78	—	39231	5201	31	0	10	0	0	logfile
✔	6XH8	22185	2023-08-13	2020-06-18	4.1	4.25	—	3.9	0.012	1.12	0.0	0.06	14.73	0.01	2.006	9.71	0.27	13.7	86.2	0.1	-4.93	0.82	0.73	—	3.9	0.003	0.64	0.0	0.04	15.25	0.00	1.412	12.88	0.03	8.0	91.9	0.1	-2.13	1.27	0.81	0.75	—	65970	3951	14	110	5	0	32621	logfile
✔	8oo7	17006	2023-08-25	2023-04-04	2.8	1.96	—	2.8	0.004	0.95	0.0	0.05	18.16	0.01	1.779	3.33	0.00	2.3	97.7	0.0	-1.13	0.82	0.81	3.75	2.8	0.004	0.69	0.0	0.04	20.54	0.00	1.413	8.72	1.59	2.2	97.8	0.0	0.63	1.38	0.84	0.83	2.97	41024	4693	26	226	11	0	0	logfile
✔	6oiG	20077	2023-08-17	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.69	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.010	1.00	6.0	0.05	18.66	0.01	1.416	32.12	0.74	13.7	86.2	0.1	-2.80	3.10	0.89	0.86	0.08	129140	6757	48	3522	116	0	0	logfile
✔	8D96	27256	2023-08-11	2022-06-09	3.35	4.21	3.32	3.9	0.002	0.58	0.0	0.04	17.10	0.00	1.836	7.87	0.11	2.5	97.3	0.2	2.00	0.89	0.85	1.96	3.8	0.002	0.48	0.0	0.04	17.33	0.00	1.431	5.89	0.32	2.7	97.1	0.2	1.92	0.41	0.90	0.88	1.95	9203	1056	6	30	4	0	0	logfile
✔	6T0V	10360	2023-08-15	2019-10-03	3.02	3.10	3.02	3.1	0.009	0.87	0.0	0.05	15.79	0.01	1.859	6.70	7.38	4.9	95.1	0.0	-3.31	0.66	0.83	3.33	3.1	0.002	0.54	0.0	0.04	16.58	0.00	1.433	9.25	0.31	3.0	97.0	0.0	0.10	0.63	0.66	0.84	2.65	18604	2190	8	43	8	0	0	logfile
✔	6JYL	9718	2023-08-14	2019-04-26	3.37	4.00	—	3.4	0.008	0.85	0.0	0.05	24.45	0.01	2.086	2.75	0.28	4.8	95.0	0.2	-3.67	0.90	0.87	2.92	3.4	0.003	0.58	0.0	0.03	24.61	0.00	1.434	7.64	0.19	4.1	95.9	0.0	0.80	0.55	0.90	0.88	1.97	16136	1265	11	292	3	0	0	logfile
✔	6HDD	0204	2023-08-19	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✔	7L06	23095	2023-08-17	2020-12-11	3.3	3.96	—	3.6	0.014	1.65	2.0	0.15	12.73	0.02	1.189	3.42	0.87	3.8	96.2	0.0	-0.59	0.81	0.73	1.86	3.6	0.003	0.61	0.0	0.04	14.28	0.00	1.439	7.83	0.12	4.6	95.4	0.0	-0.20	0.91	0.84	0.80	1.99	71940	4636	28	0	77	0	35068	logfile
✔	7o6Y	12741	2023-08-12	2021-04-12	3.4	3.51	3.37	3.4	0.009	1.09	11.0	0.10	15.47	0.01	1.892	15.31	0.65	3.5	96.4	0.1	-0.16	0.68	0.83	2.82	3.4	0.004	0.65	0.0	0.04	16.47	0.00	1.441	10.50	0.47	3.6	96.4	0.0	0.44	1.03	0.71	0.85	2.46	64866	7927	67	0	49	0	0	logfile
✔	7Q4D	13803	2023-08-16	2021-10-30	3.78	4.08	3.81	3.9	0.008	1.01	0.0	0.06	13.70	0.01	1.859	4.92	0.00	2.5	97.5	0.0	-1.89	0.83	0.80	3.21	3.9	0.002	0.58	0.0	0.03	15.64	0.00	1.443	8.30	0.19	2.6	97.4	0.0	1.38	1.31	0.82	0.79	1.68	20098	1216	18	0	58	0	9462	logfile
✔	7Q3Y	13797	2023-08-16	2021-10-29	4.34	4.62	4.39	4.4	0.007	0.90	0.0	0.05	13.63	0.01	1.969	5.69	0.19	3.2	96.8	0.0	-1.33	0.84	0.78	—	4.4	0.004	0.61	0.0	0.04	13.84	0.00	1.445	10.99	0.10	4.1	95.9	0.0	1.21	1.39	0.84	0.78	—	19627	1201	11	0	37	1	9386	logfile
✔	8GYX	34379	2023-08-09	2022-09-24	3.7	3.91	3.72	3.9	0.007	1.36	0.0	0.07	15.99	0.01	2.208	6.07	0.30	0.8	99.2	0.0	1.06	0.50	0.76	2.38	3.9	0.004	0.67	0.0	0.04	15.90	0.00	1.447	11.17	0.60	2.1	97.9	0.0	2.78	1.28	0.53	0.79	2.23	6118	760	4	0	6	0	0	logfile
✔	7CWT	30487	2023-08-16	2020-08-31	3.7	3.88	—	3.7	0.009	1.18	16.0	0.11	11.08	0.01	1.257	28.32	1.43	6.9	92.5	0.6	-2.94	0.58	0.48	1.06	3.7	0.005	0.73	0.0	0.04	14.05	0.00	1.450	14.14	0.28	10.5	89.2	0.3	-2.51	1.90	0.65	0.64	1.40	70024	4584	18	0	14	0	34386	logfile
✔	6QC2	4494	2023-08-24	2018-12-26	4.2	4.29	4.30	4.2	0.009	1.24	1.0	0.85	11.81	0.01	1.942	7.58	0.57	11.4	88.5	0.1	-3.91	0.69	0.76	—	4.2	0.007	1.47	0.0	0.26	13.50	0.01	1.452	17.01	0.04	9.5	90.4	0.0	-1.17	0.98	0.70	0.78	—	96938	12000	83	0	93	0	0	logfile
✔	7QTL	14144	2023-08-15	2022-01-14	2.48	2.85	2.48	2.5	0.007	0.66	0.0	0.04	17.25	0.01	1.988	8.61	3.98	2.4	97.6	0.0	-1.53	0.89	0.86	4.27	2.5	0.002	0.55	0.0	0.04	17.21	0.00	1.460	7.67	2.04	1.9	98.1	0.0	0.95	4.18	0.91	0.90	3.84	18397	2152	14	44	4	120	0	logfile
✔	6XLJ	22245	2023-08-23	2020-06-28	2.7	3.34	—	3.2	0.014	1.03	1.0	0.07	17.16	0.01	1.853	8.54	0.16	1.7	98.3	0.0	-3.00	0.75	0.81	2.68	3.2	0.004	0.62	0.0	0.04	18.48	0.00	1.461	9.70	2.14	3.1	96.9	0.0	-0.19	0.50	0.70	0.76	2.13	35902	4221	17	111	13	0	0	logfile

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