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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6TAR | 10425 | 2022-07-03 | 2019-10-30 | 2.8 | 2.81 | — | 3.7 | 0.005 | 0.91 | 0.0 | 0.06 | 14.53 | 0.01 | 2.319 | 5.38 | 0.69 | 8.5 | 91.5 | 0.0 | -3.91 | 0.62 | 0.81 | 1.84 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 17.35 | 0.00 | 2.247 | 6.14 | 3.75 | 7.8 | 92.2 | 0.0 | 0.03 | 0.64 | 0.64 | 0.84 | 1.80 | 6715 | 820 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BF8 | 7092 | 2022-07-04 | 2017-10-26 | 4.2 | 4.69 | 4.96 | 7.4 | 0.007 | 1.21 | 0.0 | 0.06 | 11.02 | 0.01 | 2.252 | 7.63 | 0.00 | 3.8 | 96.2 | 0.0 | -4.13 | 0.80 | 0.71 | — | 4.0 | 0.003 | 0.75 | 0.0 | 0.04 | 12.80 | 0.00 | 2.117 | 24.22 | 0.00 | 8.0 | 92.0 | 0.0 | -1.42 | 2.34 | 0.82 | 0.75 | — | 15412 | 1888 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5JUY | 8178 | 2022-07-05 | 2016-05-10 | 4.1 | 4.28 | — | 4.1 | 0.009 | 1.23 | 0.0 | 0.05 | 10.72 | 0.00 | 1.447 | 16.35 | 0.71 | 6.6 | 93.0 | 0.4 | -3.18 | 0.76 | 0.55 | — | 4.1 | 0.007 | 0.85 | 0.0 | 0.05 | 12.71 | 0.00 | 2.047 | 18.43 | 0.02 | 8.0 | 91.9 | 0.1 | -1.50 | 2.17 | 0.85 | 0.70 | — | 76058 | 9461 | 32 | 0 | 14 | 0 | 0 | logfile |
✔ | 6B70 | 7062 | 2022-07-05 | 2017-10-03 | 3.7 | 4.28 | 4.09 | 4.1 | 0.011 | 1.26 | 0.0 | 0.07 | 11.30 | 0.01 | 2.192 | 6.38 | 0.00 | 4.0 | 96.0 | 0.0 | -3.94 | 0.89 | 0.80 | 2.01 | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 14.50 | 0.00 | 2.201 | 12.78 | 0.12 | 5.5 | 94.5 | 0.0 | -0.61 | 0.77 | 0.89 | 0.81 | 1.42 | 22192 | 2783 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PTJ | 20471 | 2022-07-06 | 2019-07-15 | 3.8 | 4.13 | — | 4.0 | 0.008 | 1.12 | 1.0 | 0.06 | 14.87 | 0.01 | 2.011 | 6.49 | 0.39 | 10.6 | 89.2 | 0.2 | -5.32 | 0.86 | 0.82 | 1.71 | 4.0 | 0.005 | 0.76 | 0.0 | 0.05 | 16.27 | 0.00 | 2.092 | 10.10 | 0.63 | 9.8 | 90.2 | 0.0 | -2.23 | 0.76 | 0.86 | 0.82 | 1.40 | 34361 | 4280 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TLJ | 10516 | 2022-07-04 | 2019-12-02 | 3.8 | 4.18 | — | 4.0 | 0.008 | 0.89 | 0.0 | 0.04 | 15.17 | 0.00 | 2.042 | 21.94 | 0.18 | 8.5 | 91.2 | 0.2 | -3.19 | 0.86 | 0.78 | 0.60 | 4.0 | 0.005 | 0.82 | 0.0 | 0.04 | 16.93 | 0.00 | 2.041 | 21.12 | 0.51 | 8.1 | 91.8 | 0.1 | -0.15 | 2.01 | 0.86 | 0.78 | 0.53 | 72305 | 9200 | 23 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R3Q | 4719 | 2022-07-03 | 2019-03-20 | 3.4 | 3.77 | — | 3.5 | 0.011 | 1.24 | 0.0 | 0.07 | 12.61 | 0.01 | 2.080 | 6.09 | 0.58 | 6.7 | 93.3 | 0.0 | -3.70 | 0.79 | 0.81 | 2.86 | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 14.59 | 0.00 | 2.038 | 10.82 | 0.19 | 4.0 | 96.0 | 0.0 | 0.94 | 2.10 | 0.80 | 0.82 | 2.03 | 9529 | 1182 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 6P9Y | 20278 | 2022-07-03 | 2019-06-10 | 3.01 | 3.22 | 2.89 | 3.2 | 0.005 | 0.68 | 0.0 | 0.05 | 12.48 | 0.00 | 2.246 | 9.33 | 0.81 | 3.0 | 97.0 | 0.0 | -4.06 | 0.68 | 0.83 | 3.78 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.09 | 0.00 | 2.100 | 7.38 | 0.46 | 3.0 | 97.0 | 0.0 | -0.12 | 0.96 | 0.68 | 0.85 | 3.08 | 7994 | 998 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TTU | 10585 | 2022-07-03 | 2019-12-30 | 3.7 | 3.87 | 3.69 | 3.8 | 0.006 | 0.88 | 0.0 | 0.05 | 15.10 | 0.00 | 1.312 | 13.81 | 0.29 | 9.3 | 90.7 | 0.0 | -2.77 | 0.82 | 0.80 | 1.42 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 17.18 | 0.00 | 2.072 | 10.54 | 0.51 | 6.2 | 93.8 | 0.0 | -0.12 | 1.64 | 0.82 | 0.81 | 1.31 | 12746 | 1604 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 6CM3 | 7516 | 2022-07-05 | 2018-03-02 | 3.54 | 3.68 | — | 3.6 | 0.009 | 1.05 | 0.0 | 0.07 | 9.42 | 0.01 | 2.044 | 5.03 | 0.11 | 9.1 | 90.9 | 0.0 | -4.10 | 0.77 | 0.82 | 2.58 | 3.6 | 0.004 | 0.78 | 1.0 | 0.05 | 14.76 | 0.00 | 1.195 | 11.74 | 0.30 | 5.7 | 94.3 | 0.0 | -1.57 | 1.53 | 0.77 | 0.83 | 2.25 | 25455 | 3177 | 27 | 0 | 90 | 0 | 0 | logfile |
✔ | 6QLF | 4581 | 2022-07-04 | 2019-01-31 | 3.45 | 3.59 | — | 3.5 | 0.005 | 0.83 | 0.0 | 0.05 | 15.14 | 0.01 | 2.290 | 3.54 | 0.44 | 5.1 | 94.7 | 0.2 | -3.91 | 0.75 | 0.82 | 2.21 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.65 | 0.00 | 2.150 | 4.97 | 0.22 | 4.5 | 95.4 | 0.1 | 0.88 | 1.22 | 0.77 | 0.84 | 1.72 | 13501 | 1783 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LQi | 0946 | 2022-07-05 | 2020-01-13 | 4.5 | 4.59 | — | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.59 | 0.01 | 2.203 | 10.88 | 0.40 | 6.4 | 93.4 | 0.2 | -3.01 | 0.70 | 0.75 | — | 4.5 | 0.003 | 0.72 | 0.0 | 0.04 | 13.07 | 0.00 | 2.318 | 8.93 | 0.00 | 7.0 | 92.9 | 0.1 | -0.29 | 1.55 | 0.71 | 0.75 | — | 26934 | 3903 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Fo0 | 4286 | 2022-07-03 | 2018-02-05 | 4.1 | 4.16 | 2.43 | 4.1 | 0.012 | 0.96 | 0.0 | 0.05 | 8.97 | 0.01 | 2.040 | 5.64 | 0.00 | 10.2 | 89.8 | 0.1 | -4.55 | 0.72 | 0.79 | — | 4.1 | 0.004 | 0.61 | 0.0 | 0.04 | 12.47 | 0.00 | 1.919 | 11.06 | 0.00 | 7.1 | 92.9 | 0.0 | -1.14 | 2.41 | 0.74 | 0.81 | — | 61356 | 3910 | 24 | 0 | 8 | 0 | 30362 | logfile |
✔ | 6C26 | 7336 | 2022-07-04 | 2018-01-06 | 3.5 | 3.64 | — | 3.6 | 0.011 | 1.39 | 0.0 | 0.07 | 15.85 | 0.01 | 1.833 | 6.83 | 2.07 | 9.8 | 90.2 | 0.0 | -4.59 | 0.67 | 0.80 | 3.65 | 3.6 | 0.005 | 0.78 | 0.0 | 0.04 | 15.92 | 0.00 | 2.165 | 5.46 | 0.33 | 5.9 | 94.1 | 0.0 | -0.66 | 1.29 | 0.73 | 0.84 | 2.47 | 17188 | 2077 | 14 | 0 | 19 | 0 | 0 | logfile |
✔ | 4Ui9 | 2924 | 2022-07-04 | 2015-03-27 | 3.6 | 3.87 | — | 3.6 | 0.016 | 1.97 | 124.0 | 0.11 | 17.96 | 0.01 | 0.849 | 20.05 | 11.86 | 5.3 | 92.8 | 1.9 | -1.90 | 0.85 | 0.73 | 1.60 | 3.6 | 0.005 | 0.86 | 0.0 | 0.04 | 17.12 | 0.00 | 2.077 | 16.87 | 0.37 | 5.9 | 93.7 | 0.4 | 0.78 | 3.18 | 0.89 | 0.84 | 1.18 | 66453 | 8472 | 25 | 0 | 5 | 0 | 0 | logfile |
✔ | 6SWY | 10333 | 2022-07-04 | 2019-09-24 | 3.2 | 3.32 | 3.04 | 3.3 | 0.004 | 0.61 | 0.0 | 0.04 | 13.89 | 0.00 | 1.332 | 5.95 | 0.23 | 6.0 | 94.0 | 0.1 | -2.04 | 0.79 | 0.87 | 2.74 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 15.56 | 0.00 | 2.244 | 5.47 | 0.47 | 4.8 | 95.2 | 0.0 | 1.28 | 0.42 | 0.78 | 0.87 | 2.45 | 16060 | 1876 | 5 | 0 | 154 | 0 | 0 | logfile |
✔ | 6A6B | 6988 | 2022-07-03 | 2018-06-27 | 3.07 | 3.41 | 2.07 | 3.4 | 0.006 | 1.07 | 0.0 | 0.07 | 7.61 | 0.00 | 2.263 | 7.15 | 0.00 | 11.3 | 88.7 | 0.0 | -3.85 | 0.53 | 0.71 | 3.91 | 3.4 | 0.007 | 0.80 | 0.0 | 0.05 | 13.63 | 0.00 | 2.135 | 20.16 | 1.11 | 10.7 | 89.3 | 0.0 | -3.01 | 2.16 | 0.52 | 0.71 | 3.25 | 5256 | 756 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CiJ | 7480 | 2022-07-04 | 2018-02-24 | 3.9 | 4.19 | — | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 19.42 | 0.00 | 2.055 | 13.61 | 2.25 | 3.6 | 96.4 | 0.0 | -2.66 | 0.90 | 0.85 | 2.69 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 20.57 | 0.00 | 2.170 | 8.96 | 0.12 | 3.2 | 96.8 | 0.0 | -0.05 | 1.24 | 0.90 | 0.87 | 2.56 | 20413 | 2045 | 13 | 212 | 4 | 0 | 0 | logfile |
✔ | 5YW8 | 6848 | 2022-07-08 | 2017-11-29 | 4.4 | 4.51 | 4.37 | 4.4 | 0.005 | 0.80 | 4.0 | 0.05 | 13.59 | 0.01 | 2.030 | 19.14 | 8.11 | 4.4 | 95.1 | 0.4 | -2.46 | 0.64 | 0.70 | — | 4.3 | 0.003 | 0.73 | 0.0 | 0.04 | 12.82 | 0.00 | 2.164 | 13.88 | 0.00 | 4.5 | 95.5 | 0.1 | 0.64 | 3.93 | 0.65 | 0.75 | — | 50524 | 6520 | 16 | 0 | 8 | 0 | 0 | logfile |
✔ | 6TAS | 10426 | 2022-07-03 | 2019-10-30 | 2.75 | 2.69 | — | 3.8 | 0.006 | 0.87 | 4.0 | 0.06 | 14.84 | 0.01 | 2.094 | 12.76 | 0.11 | 7.7 | 92.3 | 0.0 | -1.28 | 0.53 | 0.75 | 2.28 | 2.7 | 0.003 | 0.61 | 0.0 | 0.04 | 17.90 | 0.00 | 2.159 | 6.26 | 2.84 | 5.1 | 94.9 | 0.0 | 0.90 | 0.57 | 0.59 | 0.81 | 2.25 | 8552 | 1044 | 10 | 0 | 2 | 0 | 0 | logfile |