Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CoZ	7545	2021-01-05	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.004	0.88	0.0	0.04	6.14	0.00	2.319	9.28	0.00	17.9	82.1	0.0	-2.45	1.69	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	3J4P	5681	2021-01-18	2013-09-10	4.8	5.14	—	5.0	0.013	1.80	0.0	0.09	16.32	0.01	1.415	77.35	8.64	11.8	83.9	4.3	-5.11	0.90	0.89	—	5.0	0.003	0.80	0.0	0.04	13.96	0.00	2.092	19.38	0.84	6.1	93.9	0.0	-2.22	0.81	0.90	0.87	—	254580	31020	60	0	180	60	0	logfile
✔	6oGZ	20060	2021-01-05	2019-04-03	3.6	3.85	—	3.8	0.008	0.90	0.0	0.06	15.78	0.01	2.244	5.40	0.17	4.2	95.8	0.0	-5.51	0.47	0.86	2.42	3.8	0.003	0.60	0.0	0.04	14.83	0.00	2.160	8.92	0.08	3.4	96.6	0.0	-1.97	1.44	0.46	0.85	2.32	74962	9081	14	35	2	0	0	logfile
✔	3JAD	6344	2021-01-05	2015-06-08	3.9	2.16	—	3.8	0.013	1.36	0.0	0.07	9.02	0.01	2.250	16.45	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	2.6	0.003	0.76	0.0	0.04	12.02	0.00	2.123	16.91	0.00	4.7	95.3	0.0	0.57	1.28	0.70	0.77	0.37	12705	1685	10	0	15	0	0	logfile
✔	5UF6	8574	2021-01-20	2017-01-03	2.8	2.89	—	3.0	0.013	1.62	0.0	0.11	17.15	0.01	1.437	22.40	8.39	5.0	93.8	1.2	-3.25	0.85	0.87	4.13	3.0	0.003	0.68	0.0	0.04	14.52	0.00	2.067	10.30	0.69	1.4	98.4	0.2	-0.68	0.59	0.83	0.85	3.81	261600	31020	60	0	60	3240	0	logfile
✔	6HRF	0260	2021-01-05	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.4	0.006	0.80	0.0	0.05	14.46	0.00	2.270	6.57	0.25	6.7	93.3	0.0	-3.47	3.76	0.37	0.77	3.84	3522	462	6	0	0	0	0	logfile
✔	6R25	4710	2021-01-06	2019-03-15	4.61	8.06	—	3.8	0.009	1.04	0.0	0.06	25.67	0.02	1.036	12.48	5.67	4.9	93.8	1.3	-2.97	0.74	0.45	—	3.9	0.006	0.70	0.0	0.04	26.20	0.00	1.948	23.73	0.00	3.5	96.4	0.1	0.84	1.59	0.89	0.73	—	18654	1544	16	294	4	314	0	logfile
✔	5ooE	3838	2021-01-05	2017-08-07	3.6	3.72	3.50	3.7	0.016	1.60	0.0	0.07	11.01	0.02	1.939	3.24	0.00	4.8	93.2	2.0	-1.39	0.68	0.85	2.69	3.7	0.003	0.63	0.0	0.04	13.43	0.00	2.065	9.27	0.00	3.3	96.7	0.0	0.75	2.67	0.68	0.85	2.85	14310	1810	10	0	10	0	0	logfile
✔	3JAF	6346	2021-01-05	2015-06-08	3.8	2.26	—	3.8	0.015	1.30	0.0	0.41	10.07	0.01	2.134	18.84	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.003	1.22	0.0	0.13	12.50	0.00	2.177	16.38	0.00	3.1	96.9	0.0	0.39	1.83	0.72	0.81	1.19	13865	1710	10	0	15	0	0	logfile
✔	6RZB	10061	2021-01-05	2019-06-13	4.1	4.19	3.09	4.2	0.014	1.87	5.0	0.12	17.68	0.01	2.096	9.24	5.37	4.2	95.5	0.3	-2.81	0.68	0.84	—	4.1	0.003	0.73	0.0	0.04	14.66	0.00	1.965	15.57	0.00	2.5	97.5	0.0	0.19	1.48	0.68	0.82	—	8001	1001	5	1	3	0	0	logfile
✔	5WFE	8827	2021-01-06	2017-07-11	3.64	4.04	—	3.8	0.004	0.66	0.0	0.04	22.67	0.00	1.891	14.72	0.09	4.6	95.3	0.1	-1.79	0.80	0.67	1.90	3.8	0.004	0.71	0.0	0.04	23.02	0.00	2.093	16.04	0.00	3.5	96.5	0.0	0.65	2.32	0.83	0.74	1.59	15523	1447	12	210	0	0	0	logfile
✔	6HKo	0238	2021-01-07	2018-09-07	3.42	3.56	—	3.5	0.006	0.90	0.0	0.06	11.99	0.01	1.761	5.28	0.14	5.6	94.4	0.0	-4.42	0.73	0.83	3.57	3.5	0.002	0.61	0.0	0.04	14.18	0.00	2.033	9.87	0.08	3.3	96.7	0.0	-0.60	1.30	0.73	0.84	2.80	34518	4154	23	73	8	0	0	logfile
✔	6HLR	0240	2021-01-07	2018-09-11	3.18	3.30	—	3.3	0.008	0.94	0.0	0.06	12.28	0.01	1.734	4.70	0.15	4.9	95.1	0.0	-4.37	0.70	0.84	4.14	3.2	0.005	0.69	0.0	0.05	14.45	0.00	1.996	9.35	0.00	4.2	95.8	0.0	-0.38	1.64	0.72	0.86	3.48	32370	3881	21	73	8	0	0	logfile
✔	6HLS	0241	2021-01-06	2018-09-11	3.21	3.27	—	3.3	0.007	0.95	0.0	0.06	10.21	0.01	2.231	5.17	0.32	5.4	94.6	0.0	-4.54	0.64	0.82	4.01	3.3	0.003	0.63	0.0	0.04	13.27	0.00	2.113	8.90	0.00	3.6	96.4	0.0	-0.72	1.27	0.65	0.83	3.20	30954	3896	17	0	7	0	0	logfile
✔	6HLQ	0239	2021-01-07	2018-09-11	3.18	3.18	—	3.2	0.006	0.89	0.0	0.06	12.12	0.01	1.742	5.16	0.09	4.6	95.4	0.0	-4.49	0.68	0.82	4.22	3.2	0.003	0.62	0.0	0.04	14.32	0.00	1.999	8.43	0.00	3.2	96.8	0.0	-0.48	0.71	0.69	0.84	3.67	32731	3926	22	73	9	0	0	logfile
✔	6EZN	4161	2021-01-06	2017-11-16	3.3	3.39	—	3.4	0.007	1.14	0.0	0.06	12.04	0.01	2.291	5.09	0.51	8.5	91.1	0.4	-4.93	0.64	0.70	3.69	3.4	0.004	0.66	0.0	0.04	13.19	0.00	2.165	8.50	0.06	7.5	92.4	0.1	-1.29	0.64	0.77	0.82	3.16	17008	2090	13	0	21	0	0	logfile
✔	6BX1	7302	2021-01-20	2017-12-15	3.25	3.31	—	3.4	0.009	1.00	120.0	0.07	10.33	0.01	0.683	20.60	1.07	3.9	95.9	0.2	-2.14	0.71	0.87	5.49	3.4	0.006	0.79	0.0	0.05	13.68	0.00	1.994	14.00	0.16	5.1	94.8	0.2	-2.04	1.94	0.71	0.87	4.58	261180	32400	60	0	0	0	0	logfile
✔	6R1U	4705	2021-01-06	2019-03-15	4.36	6.44	—	3.8	0.008	1.04	0.0	0.06	25.75	0.02	0.544	11.63	6.26	4.7	94.1	1.2	-2.99	0.73	0.45	—	3.9	0.003	0.64	0.0	0.04	25.52	0.00	2.050	13.52	0.00	2.6	97.4	0.1	0.94	1.26	0.89	0.77	—	18394	1550	14	294	4	0	0	logfile
✔	5ooF	3839	2021-01-05	2017-08-07	3.4	3.53	3.41	3.5	0.015	1.54	0.0	0.08	11.80	0.02	2.010	2.86	0.00	6.3	91.0	2.7	-1.40	0.71	0.85	2.69	3.5	0.007	0.79	0.0	0.05	13.83	0.00	2.004	8.67	0.00	4.3	95.1	0.5	-0.19	2.16	0.70	0.86	2.58	14640	1855	10	0	10	0	0	logfile
✔	6GC7	4382	2021-01-08	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.08	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.003	0.55	0.0	0.03	14.83	0.00	1.982	18.98	0.14	7.8	92.1	0.1	-1.43	1.70	0.91	0.86	—	54410	1738	17	1901	0	0	0	logfile

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