Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V6B	31741	2023-07-07	2021-08-20	3.3	2.81	3.21	3.3	0.012	1.65	3.0	0.09	13.69	0.01	2.312	6.55	5.01	4.3	95.7	0.0	-1.67	0.57	0.72	2.30	3.2	0.003	0.60	0.0	0.04	16.10	0.00	2.216	9.41	0.20	2.6	97.4	0.0	0.69	1.91	0.69	0.80	2.27	13633	1678	2	0	0	0	0	logfile
✔	6VQR	21355	2023-07-06	2020-02-05	2.78	3.29	—	3.3	0.013	0.97	2.0	0.06	16.45	0.00	2.021	15.78	8.21	8.3	91.7	0.0	-2.79	0.54	0.76	2.56	3.3	0.005	0.70	0.0	0.04	17.73	0.00	2.092	12.71	5.90	5.1	94.9	0.0	0.03	1.15	0.52	0.76	2.18	11254	1420	10	0	5	0	0	logfile
✔	7P7L	13239	2023-07-17	2021-07-19	3.0	2.79	—	2.8	0.005	0.79	0.0	1.47	14.80	0.01	2.203	6.09	1.30	2.5	97.5	0.0	-0.49	0.90	0.89	2.97	2.8	0.011	2.18	0.0	0.44	15.15	0.00	2.112	9.89	2.03	2.5	97.5	0.0	1.28	1.10	0.89	0.88	2.74	37587	4710	24	0	32	0	0	logfile
✔	6KLD	0707	2023-07-06	2019-07-30	3.58	3.66	—	3.6	0.003	0.63	0.0	0.04	14.00	0.00	2.199	8.12	0.00	9.2	90.7	0.1	-0.76	0.74	0.82	2.05	3.6	0.003	0.65	0.0	0.04	15.93	0.00	2.139	8.24	0.28	8.8	91.2	0.1	-0.02	0.43	0.72	0.81	1.42	12794	1617	1	0	2	0	0	logfile
✔	8H1C	34427	2023-07-09	2022-10-02	4.5	5.28	4.53	4.4	0.008	0.81	0.0	0.05	14.77	0.00	2.204	8.17	4.42	7.2	92.8	0.0	-3.24	0.87	0.77	—	4.4	0.002	0.63	0.0	0.04	13.05	0.00	2.138	9.47	0.06	3.8	96.2	0.0	-0.29	0.89	0.89	0.84	—	18483	1966	4	142	2	0	0	logfile
✔	8FLQ	29283	2023-07-05	2022-12-22	2.55	2.78	2.65	2.8	0.003	0.57	0.0	0.04	13.87	0.00	2.209	7.54	0.21	2.1	97.9	0.0	1.35	0.64	0.70	3.93	2.9	0.004	0.57	0.0	0.04	15.97	0.00	2.158	8.67	0.75	2.8	97.2	0.0	1.36	0.35	0.64	0.83	3.45	8992	1146	9	0	0	14	0	logfile
✔	8EWi	28646	2023-07-04	2022-10-23	3.5	2.81	3.63	2.1	0.003	0.53	0.0	0.04	12.21	0.00	2.153	14.61	5.25	5.7	94.2	0.1	-0.22	0.68	0.66	0.83	1.9	0.003	0.74	0.0	0.04	14.47	0.00	2.069	17.19	0.51	5.9	94.0	0.2	-0.30	0.52	0.68	0.65	0.65	55708	7100	8	0	12	0	0	logfile
✔	7TT5	26111	2023-07-07	2022-01-31	4.3	4.48	—	4.4	0.004	0.69	0.0	0.04	10.02	0.01	2.033	4.14	0.00	0.9	99.1	0.0	1.26	0.65	0.70	—	4.3	0.004	0.59	0.0	0.04	12.22	0.00	1.862	9.68	0.00	3.4	96.6	0.0	0.38	1.20	0.69	0.77	—	14255	928	5	0	0	0	6938	logfile
✔	6LN6	0925	2023-07-04	2019-12-28	2.9	3.03	2.87	3.0	0.005	0.64	0.0	0.04	11.98	0.00	2.035	6.53	0.00	2.0	98.0	0.0	-3.94	0.65	0.82	3.55	3.0	0.002	0.51	0.0	0.04	15.73	0.00	2.055	7.86	1.74	1.4	98.6	0.0	0.61	1.33	0.65	0.83	3.33	7836	1010	1	0	4	0	0	logfile
✔	8G9Y	29882	2023-07-08	2023-02-22	4.28	5.75	4.38	4.3	0.008	1.34	4.0	0.07	14.14	0.01	2.193	9.13	0.00	9.6	90.3	0.1	-4.83	0.87	0.84	—	4.3	0.003	0.73	0.0	0.04	13.30	0.00	2.145	15.98	0.00	7.7	92.3	0.0	-1.65	1.17	0.87	0.85	—	17135	1983	53	0	120	0	0	logfile
✔	8ioS	35622	2023-07-12	2023-03-13	2.5	3.18	2.60	3.1	0.003	0.54	0.0	0.05	12.87	0.00	2.195	4.04	0.00	2.9	97.1	0.0	0.45	0.83	0.87	3.69	3.0	0.003	0.56	0.0	0.05	14.27	0.00	2.143	4.75	0.79	4.2	95.8	0.0	0.39	0.26	0.81	0.86	3.79	25695	3189	15	0	54	0	0	logfile
✔	7P7K	13238	2023-07-16	2021-07-19	3.1	2.77	—	2.7	0.006	0.71	0.0	1.48	12.51	0.01	2.238	4.98	2.21	2.5	97.5	0.0	-0.42	0.90	0.89	3.67	2.6	0.012	2.21	0.0	0.45	14.23	0.00	2.064	8.59	0.29	2.4	97.6	0.0	1.24	1.15	0.90	0.88	3.32	36531	4630	23	0	23	0	0	logfile
✔	8iL3	35526	2023-07-04	2023-03-01	3.86	4.17	3.88	3.9	0.009	1.39	0.0	0.08	18.38	0.01	2.362	6.55	8.75	10.6	89.4	0.0	-5.16	0.80	0.71	1.53	3.9	0.004	0.70	0.0	0.04	17.51	0.00	2.132	15.26	0.17	8.2	91.8	0.0	-2.50	1.38	0.81	0.73	1.69	5172	665	3	0	0	0	0	logfile
✔	6WR4	21876	2023-07-06	2020-04-29	2.9	3.02	—	3.0	0.012	1.40	3.0	0.07	14.49	0.01	2.272	4.03	5.53	5.2	94.4	0.4	-6.12	0.65	0.71	3.52	3.0	0.003	0.72	0.0	0.04	15.92	0.00	2.131	8.10	1.28	5.3	94.7	0.0	-0.88	1.22	0.64	0.77	2.97	11934	1410	6	0	6	0	0	logfile
✔	6ZVP	11467	2023-07-07	2020-07-27	4.0	4.73	4.10	4.6	0.003	0.61	0.0	0.04	12.58	0.00	1.744	16.69	5.87	5.0	95.0	0.0	-0.21	0.72	0.60	—	4.5	0.004	0.76	0.0	0.05	15.31	0.00	1.959	26.73	0.72	5.6	94.4	0.0	-0.99	2.30	0.75	0.67	—	14552	1832	8	0	8	0	0	logfile
✔	6PDW	20318	2023-07-06	2019-06-19	3.1	3.42	—	3.3	0.005	0.81	1.0	0.05	10.94	0.01	1.792	39.31	0.74	10.7	89.3	0.1	-3.33	0.76	0.79	2.84	3.3	0.003	0.77	0.0	0.04	14.96	0.00	1.917	11.85	0.08	8.6	91.4	0.0	-0.80	1.74	0.76	0.81	1.96	11483	1450	10	0	21	0	0	logfile
✔	7VFE	31950	2023-07-06	2021-09-13	2.63	2.74	2.54	2.7	0.008	0.58	0.0	0.05	13.52	0.00	2.285	2.98	3.08	3.8	96.2	0.0	-0.79	0.84	0.89	5.29	2.7	0.003	0.55	0.0	0.05	16.07	0.00	2.254	3.78	2.46	2.0	98.0	0.0	0.41	1.14	0.81	0.89	4.84	12630	1587	3	0	0	0	0	logfile
✔	7FHN	31587	2023-07-09	2021-07-29	3.3	3.55	—	3.4	0.004	0.65	0.0	0.04	13.87	0.00	2.107	10.58	0.09	3.4	96.6	0.0	1.66	0.73	0.76	2.66	3.4	0.003	0.66	0.0	0.04	16.35	0.00	2.116	12.17	0.43	3.0	97.0	0.0	2.21	0.61	0.75	0.80	2.08	10648	1294	4	0	6	0	0	logfile
✔	6U5N	20650	2023-07-06	2019-08-28	3.2	3.32	—	3.3	0.006	0.76	0.0	0.05	14.13	0.01	1.907	2.80	0.15	4.8	95.2	0.0	-3.09	0.72	0.84	2.62	3.3	0.002	0.46	0.0	0.05	15.73	0.00	2.145	5.34	0.44	2.3	97.7	0.0	0.97	1.21	0.67	0.84	2.00	13262	1776	24	0	24	8	0	logfile
✔	8J3W	35967	2023-07-05	2023-04-18	3.07	3.28	3.11	3.3	0.004	0.68	0.0	0.04	13.92	0.00	1.891	16.07	0.00	3.8	96.2	0.0	-1.89	0.58	0.76	2.14	3.3	0.004	0.63	0.0	0.04	15.43	0.00	2.065	13.53	0.38	2.1	97.9	0.0	0.50	1.23	0.56	0.78	1.65	9739	1218	1	0	1	0	0	logfile

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