Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MRW	9214	2021-08-09	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.39	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.010	0.88	2.0	0.03	12.02	0.00	2.102	6.81	0.03	2.1	97.9	0.0	6.08	0.67	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	6oT0	20190	2021-08-08	2019-05-02	3.84	4.10	—	4.4	0.015	1.46	0.0	0.17	14.78	0.01	2.191	3.15	0.79	6.3	93.7	0.0	-3.15	0.53	0.75	0.80	4.4	0.003	0.93	0.0	0.07	16.50	0.00	2.171	16.94	0.62	5.2	94.8	0.0	-1.52	1.37	0.56	0.77	0.66	10572	1345	7	0	1	0	0	logfile
✔	6Q2R	20578	2021-08-10	2019-08-08	4.3	4.92	—	4.6	0.004	0.81	0.0	0.05	8.41	0.01	1.384	4.78	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	4.6	0.004	0.74	0.0	0.04	11.58	0.00	2.019	20.71	0.00	7.3	92.7	0.0	-1.64	2.78	0.75	0.73	—	30392	3800	16	0	40	0	0	logfile
✔	6oHY	20074	2021-08-08	2019-04-08	4.1	4.28	4.05	4.2	0.006	0.98	0.0	0.06	11.07	0.01	2.288	4.35	0.40	10.5	88.9	0.5	-3.30	0.79	0.79	—	4.2	0.003	0.67	0.0	0.05	12.61	0.00	2.180	8.67	0.00	8.9	91.0	0.1	-1.48	1.29	0.80	0.80	—	15192	1701	12	0	126	0	0	logfile
✔	6NE3	9356	2021-08-08	2018-12-16	3.9	3.77	—	3.7	0.008	0.95	0.0	0.05	28.16	0.01	2.287	6.25	0.48	6.9	93.1	0.0	-3.61	0.74	0.71	0.90	3.6	0.003	0.67	0.0	0.04	27.57	0.00	2.170	12.78	0.38	6.1	93.9	0.0	-0.18	0.57	0.80	0.81	0.91	16336	1245	11	312	1	0	0	logfile
✔	6oER	20035	2021-08-09	2019-03-27	3.29	3.60	—	3.4	0.007	0.78	0.0	0.05	19.70	0.01	1.709	13.61	0.30	9.5	90.3	0.2	-4.65	0.85	0.84	3.60	3.3	0.004	0.69	0.0	0.04	20.33	0.00	2.214	10.46	0.06	4.8	95.1	0.1	-0.75	1.94	0.86	0.85	2.53	19482	1952	11	206	6	0	0	logfile
✔	6PYH	20524	2021-08-08	2019-07-29	4.3	4.52	—	4.3	0.016	1.05	0.0	0.05	14.64	0.01	2.079	28.13	0.55	18.1	81.6	0.2	-5.21	0.84	0.83	—	4.3	0.003	0.63	0.0	0.04	13.69	0.00	2.167	12.81	0.00	8.0	92.0	0.0	-2.18	0.68	0.83	0.81	—	13187	1648	3	0	0	0	0	logfile
✔	6MRT	9212	2021-08-08	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.39	0.00	2.218	3.12	1.36	0.4	99.6	0.0	5.29	3.08	0.73	0.86	2.53	26868	3420	12	0	0	0	0	logfile
✔	6PUU	20482	2021-08-11	2019-07-18	3.7	4.09	—	3.7	0.006	1.08	0.0	0.05	14.45	0.01	2.302	4.98	1.13	5.4	94.4	0.2	-3.50	0.75	0.83	1.62	3.7	0.002	0.65	0.0	0.04	14.95	0.00	2.192	6.74	0.09	5.0	95.0	0.1	0.41	0.50	0.75	0.84	1.21	38492	5236	8	0	8	0	0	logfile
✔	6PUS	20480	2021-08-11	2019-07-18	3.7	4.57	—	3.8	0.011	1.14	0.0	0.06	14.53	0.01	2.208	8.80	1.64	7.9	91.6	0.5	-3.61	0.75	0.84	1.56	3.8	0.002	0.60	0.0	0.04	14.57	0.00	2.162	9.50	0.35	6.0	93.9	0.1	0.16	0.42	0.75	0.84	1.56	37380	5224	8	0	12	0	0	logfile
✔	6PUR	20479	2021-08-11	2019-07-18	4.4	5.34	—	4.1	0.011	1.10	0.0	0.06	14.66	0.01	2.255	9.64	1.66	7.9	91.6	0.5	-3.61	0.74	0.81	—	4.1	0.003	0.64	0.0	0.04	13.14	0.00	2.182	11.75	0.00	7.1	92.9	0.0	0.45	0.63	0.75	0.84	—	37268	5224	8	0	8	0	0	logfile
✔	6ACD	9589	2021-08-09	2018-07-26	3.9	4.22	—	4.0	0.007	1.05	0.0	0.06	9.72	0.01	1.629	8.02	0.25	14.3	85.1	0.5	-4.47	0.79	0.77	1.25	4.0	0.003	0.74	0.0	0.05	13.80	0.00	2.117	15.36	0.36	11.3	88.4	0.3	-2.25	1.62	0.79	0.77	1.12	24845	3187	3	0	0	0	0	logfile
✔	6oEN	20031	2021-08-09	2019-03-27	4.3	4.59	—	4.3	0.006	0.95	0.0	0.05	23.37	0.01	2.208	8.61	3.61	7.1	92.9	0.0	-3.86	0.85	0.83	—	4.3	0.004	0.67	0.0	0.04	21.98	0.00	2.104	16.27	0.00	7.4	92.6	0.0	-0.84	2.53	0.86	0.83	—	19649	1998	12	206	3	0	0	logfile
✔	6PUo	20478	2021-08-11	2019-07-18	3.3	3.94	—	3.6	0.007	0.90	0.0	0.05	13.53	0.01	2.305	5.30	0.35	7.4	92.5	0.2	-3.47	0.74	0.80	2.49	3.5	0.005	0.68	0.0	0.04	14.31	0.00	2.232	7.17	0.38	7.0	92.9	0.1	0.23	1.07	0.79	0.88	2.49	37804	5208	4	0	0	0	0	logfile
✔	6oEP	20033	2021-08-08	2019-03-27	3.7	3.92	—	3.7	0.008	0.99	0.0	0.06	22.40	0.01	2.147	6.54	0.55	7.6	92.1	0.3	-4.10	0.83	0.84	2.54	3.7	0.003	0.66	0.0	0.04	22.42	0.00	2.133	10.43	0.31	5.0	95.0	0.1	-0.55	0.58	0.82	0.83	1.97	19198	1908	11	206	5	0	0	logfile
✔	6MZJ	9303	2021-08-08	2018-11-05	4.8	5.06	—	4.4	0.014	1.51	0.0	0.08	8.06	0.00	2.352	0.86	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	4.5	0.005	0.82	0.0	0.05	7.49	0.00	2.205	7.24	0.00	8.5	91.4	0.1	-2.08	2.27	0.77	0.82	—	12653	2088	10	0	149	0	0	logfile
✔	6oEo	20032	2021-08-09	2019-03-27	3.69	4.00	—	3.8	0.005	0.72	0.0	0.05	21.45	0.00	1.892	14.16	0.12	8.2	91.7	0.2	-4.21	0.84	0.84	2.52	3.8	0.003	0.67	0.0	0.04	21.66	0.00	2.148	11.20	0.12	5.8	94.1	0.1	-0.76	0.49	0.84	0.83	2.38	19516	1970	11	206	6	0	0	logfile
✔	6QG2	4545	2021-08-11	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.66	7.64	13.2	83.4	3.4	-1.88	0.58	0.38	—	4.5	0.003	0.73	0.0	0.04	15.40	0.00	2.141	15.42	0.00	9.3	90.1	0.6	-1.91	1.14	0.70	0.57	—	38664	4961	16	0	0	0	0	logfile
✔	6MRU	9213	2021-08-08	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.48	0.0	0.03	13.33	0.00	2.202	3.21	0.06	1.2	98.8	0.0	5.39	3.90	0.76	0.86	1.88	29107	3705	13	0	0	0	0	logfile
✔	4UQ8	2676	2021-08-10	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.51	0.0	0.41	5.90	0.00	2.133	43.68	0.00	0.0	0.0	0.0	—	2.30	0.62	0.84	—	28647	33	54	0	5686	0	0	logfile

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