Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JZY	22584	2022-04-07	2020-09-02	3.6	3.61	—	3.6	0.009	0.96	0.0	0.05	16.34	0.01	2.236	5.56	0.85	7.0	93.0	0.0	-3.78	0.81	0.85	2.54	3.5	0.006	0.89	1.0	0.04	17.32	0.00	1.653	12.31	0.09	5.9	94.1	0.0	-0.96	0.49	0.81	0.84	2.12	24539	3024	12	61	0	0	0	logfile
✔	7PE9	13349	2022-04-08	2021-08-09	3.7	4.12	—	3.9	0.003	0.55	0.0	0.04	14.29	0.00	2.250	6.21	1.33	3.7	96.3	0.0	-0.63	0.81	0.81	1.47	3.9	0.007	0.80	1.0	0.04	15.68	0.00	2.166	9.35	0.10	3.7	96.3	0.0	0.73	1.72	0.82	0.83	1.04	31076	4043	8	0	3	0	0	logfile
✔	7VH1	31983	2022-04-05	2021-09-20	4.2	4.15	—	4.0	0.009	1.32	0.0	0.07	12.24	0.01	2.222	5.93	0.74	11.9	87.8	0.2	-5.32	0.79	0.75	—	4.0	0.003	0.74	0.0	0.04	12.70	0.00	2.140	10.71	0.00	8.8	91.2	0.0	-1.93	3.32	0.79	0.75	—	13156	1661	2	0	2	0	0	logfile
✔	7LG6	23312	2022-04-07	2021-01-19	3.28	3.65	3.42	3.6	0.022	1.77	0.0	0.13	10.12	0.01	2.421	0.61	0.33	3.6	95.7	0.7	0.39	0.76	0.84	3.99	3.5	0.004	0.68	0.0	0.04	13.86	0.00	2.127	6.97	0.22	6.6	93.2	0.2	0.24	1.27	0.73	0.84	3.09	26550	3153	66	0	135	0	0	logfile
✔	7EG4	31105	2022-04-05	2021-03-24	3.2	3.21	—	3.3	0.012	1.11	0.0	0.04	14.65	0.00	1.920	16.83	0.12	12.9	87.1	0.0	-3.12	0.78	0.84	3.02	3.3	0.005	0.73	0.0	0.04	15.92	0.00	1.953	7.71	0.24	9.5	90.5	0.0	-0.31	0.49	0.77	0.84	2.47	15258	1878	8	0	8	0	0	logfile
✔	7VH3	31985	2022-04-05	2021-09-20	3.6	3.70	—	3.7	0.005	1.09	0.0	0.06	11.49	0.01	2.257	7.95	0.90	8.5	91.0	0.4	-4.84	0.68	0.69	1.85	3.6	0.012	1.01	1.0	0.04	15.37	0.00	2.179	13.86	0.28	8.1	91.8	0.1	-1.27	1.65	0.70	0.73	1.34	12749	1612	1	0	0	0	0	logfile
✔	7PEC	13352	2022-04-08	2021-08-09	4.24	4.75	—	4.4	0.002	0.49	0.0	0.04	14.50	0.00	2.238	5.33	4.99	4.6	95.4	0.0	-1.94	0.73	0.78	—	4.4	0.003	0.67	0.0	0.04	13.43	0.00	2.088	13.53	0.00	3.3	96.7	0.1	0.43	0.93	0.74	0.79	—	30911	3822	5	0	57	0	0	logfile
✔	7E3L	30983	2022-04-08	2021-02-09	3.6	4.10	—	3.6	0.006	0.87	4.0	0.05	13.31	0.01	2.193	9.04	0.32	8.9	91.0	0.1	-2.95	0.68	0.53	2.26	3.7	0.003	0.65	0.0	0.04	14.71	0.00	2.012	9.54	0.06	4.4	95.6	0.0	-0.32	0.76	0.85	0.86	2.09	32639	4266	12	0	20	0	0	logfile
✔	7FD8	31536	2022-04-05	2021-07-16	3.8	3.98	3.73	3.6	0.008	1.41	2.0	0.11	11.94	0.00	2.327	5.06	0.61	8.6	91.3	0.1	-2.25	0.73	0.82	2.28	3.6	0.003	0.65	0.0	0.04	13.67	0.00	2.145	12.10	0.15	4.9	95.1	0.0	0.08	0.61	0.73	0.84	2.07	12152	1528	4	0	6	0	0	logfile
✔	7M1Q	23618	2022-04-05	2021-03-14	2.92	3.52	—	3.3	0.003	0.94	0.0	0.04	13.55	0.00	2.049	8.24	0.08	7.6	92.2	0.2	0.03	0.72	0.83	2.79	3.2	0.004	0.77	0.0	0.04	14.22	0.00	1.971	8.20	1.16	7.9	92.0	0.1	0.15	0.28	0.72	0.85	2.58	13780	1911	4	0	16	0	0	logfile
✔	7oTQ	13065	2022-04-07	2021-06-10	4.8	5.78	4.82	5.0	0.004	0.76	0.0	0.05	24.91	0.01	2.055	6.93	1.26	4.1	95.5	0.4	-1.44	0.84	0.78	—	5.0	0.004	0.66	0.0	0.04	24.93	0.00	1.986	14.28	0.00	3.3	96.5	0.2	0.47	1.50	0.85	0.78	—	29140	1214	11	298	0	0	13365	logfile
✔	7EG0	31103	2022-04-05	2021-03-23	3.4	3.09	—	3.3	0.015	1.13	0.0	0.05	14.94	0.00	1.975	20.60	0.12	13.9	86.0	0.1	-2.98	0.74	0.79	2.89	3.3	0.003	0.63	0.0	0.04	16.59	0.00	1.988	8.14	0.30	9.3	90.7	0.0	-0.20	2.08	0.77	0.82	2.70	15246	1878	8	0	8	0	0	logfile
✔	7PKP	13476	2022-04-06	2021-08-26	3.1	3.25	—	3.2	0.008	0.69	0.0	0.04	14.18	0.00	2.238	15.25	0.00	8.7	91.3	0.0	-4.06	0.76	0.83	2.79	3.2	0.004	0.54	0.0	0.04	16.10	0.00	2.301	7.67	0.09	6.8	93.2	0.0	-0.89	1.15	0.72	0.82	2.77	20360	2504	8	0	0	0	0	logfile
✔	7PKo	13474	2022-04-06	2021-08-26	3.9	4.01	—	3.9	0.004	0.66	0.0	0.04	14.59	0.00	2.205	10.80	0.00	7.5	92.5	0.0	-4.16	0.76	0.82	2.59	3.9	0.003	0.65	0.0	0.04	16.17	0.00	2.200	11.51	0.66	5.3	94.7	0.0	-0.75	0.64	0.75	0.81	2.23	20368	2504	8	0	0	0	0	logfile
✔	7MC0	23752	2022-04-04	2021-04-01	3.3	3.73	—	3.7	0.012	1.62	8.0	0.10	12.73	0.01	1.925	7.84	1.19	3.9	95.8	0.3	-0.86	0.65	0.81	2.48	3.7	0.003	0.62	0.0	0.04	14.66	0.00	2.209	5.84	0.13	3.9	96.1	0.0	0.90	1.05	0.65	0.82	2.10	7092	931	4	0	0	0	0	logfile
✔	7PE8	13348	2022-04-07	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.45	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.002	0.52	0.0	0.04	12.70	0.00	2.206	7.04	0.17	3.6	96.4	0.0	0.72	0.49	0.80	0.83	1.84	29291	3832	8	0	3	0	0	logfile
✔	7PEB	13351	2022-04-07	2021-08-09	3.67	4.11	—	3.9	0.002	0.52	0.0	0.04	13.94	0.00	2.245	4.50	2.69	5.1	94.9	0.1	-2.66	0.71	0.73	1.45	3.9	0.003	0.71	0.0	0.04	15.49	0.00	2.078	11.11	0.41	3.6	96.4	0.0	0.89	2.13	0.72	0.75	1.13	29140	3611	5	0	57	0	0	logfile
✔	7PEA	13350	2022-04-04	2021-08-09	4.07	4.50	—	4.2	0.002	0.47	0.0	0.04	14.27	0.00	2.239	3.97	4.24	4.7	95.3	0.0	-2.53	0.84	0.72	—	4.2	0.003	0.65	0.0	0.04	13.42	0.00	2.142	11.58	0.00	3.4	96.6	0.0	0.63	1.51	0.86	0.77	—	58252	7222	10	0	114	0	0	logfile
✔	7M65	23689	2022-04-04	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.005	0.96	0.0	0.05	12.00	0.00	2.126	25.73	0.00	17.3	82.7	0.0	-6.33	4.44	0.52	0.73	—	2025	275	10	0	5	0	0	logfile
✔	7M62	23687	2022-04-04	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile

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