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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oPC | 13015 | 2024-03-13 | 2021-05-31 | 3.0 | 2.99 | — | 2.9 | 0.017 | 1.03 | 1.0 | 0.08 | 14.54 | 0.01 | 1.898 | 5.28 | 0.05 | 5.8 | 94.1 | 0.1 | -2.03 | 0.70 | 0.77 | 3.60 | 2.9 | 0.004 | 0.68 | 0.0 | 0.04 | 16.97 | 0.00 | 1.922 | 10.24 | 2.06 | 3.9 | 96.1 | 0.0 | 0.25 | 0.61 | 0.72 | 0.82 | 3.25 | 64223 | 9104 | 34 | 103 | 49 | 0 | 0 | logfile |
✔ | 7QD4 | 13906 | 2024-03-17 | 2021-11-26 | 2.9 | 3.11 | 2.96 | 3.0 | 0.004 | 0.82 | 0.0 | 0.05 | 22.06 | 0.01 | 2.227 | 3.43 | 0.00 | 2.2 | 97.8 | 0.0 | -0.77 | 0.74 | 0.74 | 2.94 | 3.0 | 0.004 | 0.57 | 0.0 | 0.04 | 23.10 | 0.00 | 2.176 | 8.99 | 1.42 | 3.1 | 96.9 | 0.0 | 1.91 | 0.87 | 0.79 | 0.83 | 2.16 | 19118 | 1816 | 6 | 216 | 0 | 0 | 0 | logfile |
✔ | 7FDE | 31541 | 2024-03-24 | 2021-07-16 | 3.8 | 4.32 | — | 3.9 | 0.002 | 0.52 | 0.0 | 0.04 | 12.57 | 0.00 | 1.886 | 10.22 | 0.00 | 6.2 | 93.8 | 0.0 | -0.28 | 0.86 | 0.83 | 1.17 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 15.07 | 0.00 | 2.110 | 10.76 | 1.56 | 4.9 | 95.1 | 0.0 | -0.09 | 1.28 | 0.87 | 0.86 | 1.20 | 39557 | 5045 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LS6 | 23503 | 2024-03-25 | 2021-02-17 | 3.17 | 3.85 | 3.29 | 3.8 | 0.003 | 0.55 | 0.0 | 0.04 | 13.12 | 0.00 | 1.979 | 5.77 | 0.00 | 2.1 | 97.9 | 0.0 | 0.90 | 0.77 | 0.79 | 2.76 | 3.8 | 0.003 | 0.53 | 0.0 | 0.04 | 14.52 | 0.00 | 1.910 | 6.93 | 1.17 | 2.4 | 97.6 | 0.0 | 0.95 | 0.40 | 0.76 | 0.81 | 2.45 | 50103 | 3210 | 15 | 0 | 0 | 0 | 25006 | logfile |
✔ | 7NiW | 12367 | 2024-03-15 | 2021-02-14 | 3.8 | 3.54 | — | 3.7 | 0.015 | 1.29 | 0.0 | 0.07 | 17.10 | 0.01 | 2.078 | 27.93 | 2.44 | 15.5 | 84.3 | 0.2 | -5.23 | 0.66 | 0.80 | 1.64 | 3.8 | 0.004 | 0.97 | 1.0 | 0.04 | 16.82 | 0.00 | 2.069 | 11.02 | 4.13 | 4.3 | 95.7 | 0.1 | -0.70 | 1.29 | 0.63 | 0.75 | 1.09 | 12477 | 1585 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 7X0T | 32924 | 2024-03-15 | 2022-02-22 | 3.3 | 3.58 | — | 3.6 | 0.010 | 1.31 | 3.0 | 0.09 | 15.65 | 0.01 | 2.217 | 7.12 | 1.87 | 9.9 | 89.8 | 0.2 | -5.80 | 0.64 | 0.81 | 2.49 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 16.31 | 0.00 | 2.106 | 7.03 | 1.03 | 6.0 | 94.0 | 0.0 | -3.62 | 0.95 | 0.60 | 0.81 | 1.53 | 10189 | 1266 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7MJS | 23883 | 2024-03-10 | 2021-04-20 | 3.03 | 3.31 | 3.09 | 3.2 | 0.005 | 0.94 | 1.0 | 0.06 | 13.97 | 0.01 | 2.228 | 8.63 | 0.00 | 4.7 | 95.3 | 0.0 | -3.02 | 0.63 | 0.83 | 3.58 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 15.36 | 0.00 | 2.193 | 8.91 | 3.04 | 3.9 | 96.1 | 0.0 | 0.30 | 0.37 | 0.63 | 0.84 | 2.85 | 5536 | 703 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 6XH7 | 22184 | 2024-03-13 | 2020-06-18 | 3.9 | 4.03 | — | 3.8 | 0.010 | 1.02 | 0.0 | 0.06 | 14.39 | 0.01 | 2.030 | 7.59 | 0.12 | 11.4 | 88.5 | 0.1 | -4.65 | 0.80 | 0.75 | 1.46 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 15.94 | 0.00 | 1.956 | 10.82 | 1.29 | 6.7 | 93.2 | 0.1 | -1.07 | 0.88 | 0.80 | 0.78 | 1.39 | 66008 | 3971 | 13 | 102 | 4 | 0 | 32688 | logfile |
✔ | 7UZB | 26885 | 2024-03-11 | 2022-05-08 | 4.1 | 4.79 | 4.12 | 4.2 | 0.003 | 0.60 | 0.0 | 0.04 | 14.48 | 0.00 | 2.037 | 14.67 | 0.00 | 3.6 | 96.4 | 0.0 | 0.43 | 0.90 | 0.81 | — | 4.2 | 0.002 | 0.56 | 0.0 | 0.04 | 12.73 | 0.00 | 2.103 | 12.72 | 0.00 | 3.7 | 96.3 | 0.0 | 0.13 | 0.94 | 0.90 | 0.80 | — | 8392 | 1077 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8DXQ | 27773 | 2024-03-15 | 2022-08-02 | 3.8 | 4.02 | 3.81 | 3.9 | 0.002 | 0.52 | 0.0 | 0.04 | 4.66 | 0.00 | 2.301 | 1.14 | 0.00 | 10.1 | 89.9 | 0.0 | 0.26 | 0.65 | 0.71 | — | 3.9 | 0.004 | 0.64 | 0.0 | 0.04 | 5.26 | 0.00 | 2.238 | 1.07 | 0.00 | 12.2 | 87.7 | 0.0 | 0.18 | 0.28 | 0.64 | 0.69 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZKA | 11242 | 2024-03-24 | 2020-06-30 | 2.5 | 2.55 | — | 2.5 | 0.009 | 1.02 | 0.0 | 0.16 | 13.83 | 0.01 | 2.189 | 4.53 | 0.07 | 2.5 | 97.5 | 0.0 | -2.18 | 0.74 | 0.91 | 6.10 | 2.5 | 0.003 | 0.59 | 0.0 | 0.04 | 16.19 | 0.00 | 2.073 | 8.93 | 1.79 | 2.0 | 98.0 | 0.0 | 1.81 | 1.10 | 0.75 | 0.91 | 5.19 | 40800 | 4694 | 74 | 0 | 28 | 1293 | 0 | logfile |
✔ | 7MXP | 24075 | 2024-03-21 | 2021-05-19 | 4.46 | 8.21 | — | 4.5 | 0.010 | 1.47 | 7.0 | 0.08 | 16.72 | 0.01 | 2.280 | 7.97 | 0.23 | 8.5 | 91.3 | 0.2 | -3.74 | 0.89 | 0.80 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.05 | 13.41 | 0.00 | 2.111 | 20.69 | 0.00 | 8.7 | 91.3 | 0.0 | -2.06 | 1.18 | 0.89 | 0.82 | — | 31664 | 3967 | 19 | 0 | 61 | 0 | 0 | logfile |
✔ | 6V6S | 21073 | 2024-03-10 | 2019-12-05 | 4.3 | 3.91 | — | 3.8 | 0.006 | 0.75 | 1.0 | 0.05 | 13.81 | 0.00 | 2.102 | 10.50 | 0.63 | 5.0 | 94.9 | 0.1 | -4.11 | 0.58 | 0.50 | — | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 13.93 | 0.00 | 2.101 | 9.84 | 0.03 | 3.2 | 96.7 | 0.0 | -0.18 | 1.12 | 0.58 | 0.55 | — | 106422 | 13155 | 53 | 14 | 721 | 0 | 0 | logfile |
✔ | 7ENG | 31210 | 2024-03-10 | 2021-04-16 | 3.59 | 3.86 | — | 3.8 | 0.007 | 0.83 | 0.0 | 0.05 | 17.37 | 0.00 | 2.204 | 14.32 | 0.36 | 7.4 | 92.6 | 0.0 | -2.69 | 0.55 | 0.79 | 2.68 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 15.74 | 0.00 | 2.154 | 11.23 | 2.72 | 5.5 | 94.5 | 0.0 | -1.90 | 1.61 | 0.52 | 0.75 | 1.96 | 4954 | 640 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7S60 | 24845 | 2024-03-18 | 2021-09-12 | 3.7 | 4.13 | — | 4.0 | 0.009 | 1.42 | 3.0 | 0.07 | 16.09 | 0.01 | 2.157 | 3.93 | 1.35 | 5.3 | 94.6 | 0.1 | -5.53 | 0.65 | 0.83 | 1.27 | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 16.79 | 0.00 | 1.974 | 12.21 | 2.57 | 5.2 | 94.7 | 0.0 | 0.20 | 0.58 | 0.65 | 0.84 | 0.87 | 21086 | 2679 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 7XDK | 33150 | 2024-03-23 | 2022-03-27 | 3.2 | 3.46 | 3.27 | 3.4 | 0.004 | 0.57 | 0.0 | 0.05 | 13.49 | 0.00 | 2.200 | 6.88 | 0.12 | 4.0 | 96.0 | 0.0 | -0.52 | 0.77 | 0.82 | 2.56 | 3.4 | 0.003 | 0.66 | 1.0 | 0.05 | 14.89 | 0.00 | 2.049 | 8.75 | 1.83 | 4.5 | 95.5 | 0.0 | -0.36 | 0.34 | 0.78 | 0.86 | 2.31 | 39000 | 4995 | 30 | 0 | 36 | 0 | 0 | logfile |
✔ | 7oXP | 13103 | 2024-03-17 | 2021-06-22 | 2.7 | 2.77 | 2.57 | 2.8 | 0.003 | 0.59 | 0.0 | 0.04 | 13.63 | 0.00 | 2.120 | 8.06 | 0.00 | 2.2 | 97.8 | 0.0 | 0.08 | 0.71 | 0.86 | 3.21 | 2.8 | 0.004 | 0.61 | 0.0 | 0.04 | 17.73 | 0.00 | 2.106 | 7.69 | 2.39 | 4.1 | 95.9 | 0.0 | 0.61 | 0.42 | 0.72 | 0.89 | 2.23 | 18730 | 2300 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RJA | 4901 | 2024-03-18 | 2019-04-26 | 3.0 | 3.11 | — | 3.1 | 0.005 | 0.86 | 0.0 | 0.05 | 17.28 | 0.01 | 2.314 | 2.75 | 0.23 | 5.8 | 94.2 | 0.0 | -3.51 | 0.64 | 0.81 | 2.74 | 3.1 | 0.003 | 0.53 | 0.0 | 0.04 | 18.09 | 0.00 | 2.201 | 7.60 | 2.77 | 3.9 | 96.1 | 0.0 | 0.06 | 0.47 | 0.66 | 0.85 | 2.28 | 20372 | 1996 | 8 | 194 | 0 | 0 | 0 | logfile |
✔ | 7UDS | 26458 | 2024-03-17 | 2022-03-20 | 3.1 | 2.25 | 3.26 | 1.5 | 0.005 | 0.74 | 0.0 | 0.05 | 17.29 | 0.00 | 2.015 | 10.59 | 0.00 | 4.8 | 95.2 | 0.0 | -0.23 | 0.73 | 0.69 | 2.60 | 1.5 | 0.003 | 0.65 | 0.0 | 0.04 | 15.40 | 0.00 | 2.114 | 10.50 | 2.98 | 4.0 | 96.0 | 0.0 | -0.21 | 1.13 | 0.74 | 0.71 | 2.36 | 17032 | 2094 | 32 | 0 | 53 | 0 | 0 | logfile |
✔ | 7SEF | 25067 | 2024-03-17 | 2021-09-30 | 3.55 | 4.41 | 3.51 | 3.5 | 0.005 | 0.67 | 0.0 | 0.04 | 10.54 | 0.00 | 2.266 | 3.73 | 0.00 | 6.2 | 93.8 | 0.0 | -2.07 | 0.90 | 0.85 | 1.80 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 11.92 | 0.00 | 2.245 | 11.37 | 1.21 | 4.7 | 95.3 | 0.0 | -1.06 | 2.68 | 0.91 | 0.88 | 2.84 | 17154 | 2256 | 6 | 0 | 0 | 0 | 0 | logfile |