Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RYQ	24745	2022-11-29	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.37	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.77	0.0	0.04	14.07	0.00	2.218	15.93	0.00	6.6	93.4	0.0	-0.30	1.23	0.85	0.77	—	4332	527	1	0	0	0	0	logfile
✔	7RSQ	24677	2022-11-29	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.51	0.0	0.03	15.35	0.00	2.389	2.76	0.00	2.6	97.4	0.0	2.59	1.83	0.63	0.70	1.77	3970	246	1	0	0	0	1958	logfile
✔	7P65	13218	2022-11-29	2021-07-15	2.7	2.87	2.60	2.8	0.004	0.63	0.0	0.05	12.60	0.00	2.381	2.48	0.00	2.8	97.2	0.0	-2.90	0.55	0.86	5.81	2.8	0.007	0.70	0.0	0.05	15.71	0.00	2.309	5.67	1.26	3.3	96.7	0.0	-2.84	0.47	0.48	0.88	5.48	4145	550	5	0	0	0	0	logfile
✔	7N8i	24237	2022-11-29	2021-06-14	3.0	3.22	3.02	3.2	0.011	1.22	0.0	0.07	10.84	0.01	2.309	0.85	0.26	1.6	98.4	0.0	1.04	0.75	0.87	5.46	3.2	0.008	0.71	0.0	0.05	14.99	0.00	2.096	5.10	1.29	2.8	97.2	0.0	1.02	1.00	0.75	0.91	5.65	3600	445	3	0	5	0	0	logfile
✔	7P6A	13223	2022-11-29	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✔	7R7N	24299	2022-11-29	2021-06-25	3.95	4.08	3.93	4.1	0.010	1.24	0.0	0.07	9.44	0.00	2.553	0.78	0.45	3.2	96.8	0.0	0.00	0.81	0.77	3.23	4.0	0.005	0.77	0.0	0.05	14.14	0.00	2.272	10.85	0.90	4.6	95.4	0.0	-1.14	1.31	0.84	0.81	2.42	2790	391	4	0	3	0	0	logfile
✔	7N9A	24253	2022-11-29	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.003	0.70	0.0	0.04	15.29	0.00	2.157	13.87	1.55	2.9	97.1	0.0	-1.08	0.56	0.73	0.70	2.14	2431	312	2	0	0	0	0	logfile
✔	7ABK	11698	2022-11-29	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.66	0.0	0.03	19.91	0.00	2.304	7.87	0.00	2.1	97.9	0.0	5.18	1.55	0.28	0.85	1.35	1574	196	1	0	0	0	0	logfile
✔	7F62	31470	2022-11-29	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.89	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	4.1	0.003	0.66	0.0	0.04	15.35	0.00	2.242	11.10	0.55	9.8	90.2	0.0	-1.83	1.44	0.69	0.77	1.00	3321	427	3	0	0	0	0	logfile
✔	7P16	13157	2022-11-29	2021-07-01	4.3	4.40	3.53	4.3	0.004	0.73	0.0	0.04	15.07	0.00	2.178	7.56	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.003	0.71	0.0	0.04	14.24	0.00	2.164	11.96	0.00	3.4	96.6	0.0	0.67	1.45	0.64	0.77	—	3621	444	3	0	1	0	0	logfile
✔	7P14	13155	2022-11-29	2021-07-01	3.66	3.82	3.50	3.8	0.004	0.64	0.0	0.04	16.56	0.00	2.295	7.45	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	3.8	0.003	0.59	0.0	0.04	16.52	0.00	2.253	9.93	0.76	3.6	96.4	0.0	2.50	0.43	0.61	0.78	1.61	3796	454	3	0	3	0	0	logfile
✔	7P6B	13224	2022-11-29	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.006	0.70	0.0	0.05	17.13	0.00	2.107	8.18	0.65	4.7	95.3	0.0	-2.26	0.86	0.49	0.88	6.83	4060	540	5	0	0	0	0	logfile
✔	7E3C	30979	2022-11-29	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.81	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.003	0.74	0.0	0.05	14.07	0.00	2.129	15.48	0.00	11.6	88.4	0.0	-2.98	1.56	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✔	7E3B	30978	2022-11-29	2021-02-08	4.2	4.05	—	4.0	0.006	0.81	0.0	0.05	13.26	0.00	2.241	16.63	0.00	8.2	91.8	0.0	-2.04	0.74	0.84	—	4.0	0.004	0.70	0.0	0.05	13.25	0.00	2.242	14.15	0.00	7.0	93.0	0.0	-1.24	0.40	0.74	0.83	—	3299	421	4	0	1	0	0	logfile
✔	7E39	30977	2022-11-29	2021-02-08	3.7	3.11	—	2.9	0.005	0.76	0.0	0.05	14.34	0.01	2.130	15.98	0.00	10.1	89.9	0.0	-3.52	0.50	0.74	2.30	2.9	0.003	0.65	0.0	0.05	15.89	0.00	2.161	11.51	0.00	6.2	93.8	0.0	-2.43	0.42	0.50	0.74	2.23	3074	414	4	0	1	0	0	logfile
✔	7F63	31471	2022-11-29	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.60	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.003	0.79	0.0	0.05	15.84	0.00	2.142	15.49	0.54	10.0	89.5	0.5	-2.58	1.48	0.65	0.70	1.33	3375	429	3	0	0	0	0	logfile
✔	7LC9	23270	2022-11-29	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.009	0.92	0.0	0.05	16.86	0.00	1.984	46.70	2.65	14.8	85.2	0.0	-3.60	0.67	0.70	0.81	0.10	3497	525	12	0	0	0	0	logfile
✔	7P6D	13226	2022-11-29	2021-07-15	3.3	3.43	3.17	3.5	0.003	0.66	0.0	0.05	11.41	0.00	2.575	2.25	0.00	2.7	97.3	0.0	-2.54	0.55	0.77	3.72	3.5	0.009	0.80	0.0	0.06	13.82	0.00	2.022	7.32	0.81	13.6	86.0	0.4	-3.19	2.42	0.47	0.83	4.68	4340	575	5	0	0	0	0	logfile
✔	7P66	13219	2022-11-29	2021-07-15	3.0	3.09	2.70	3.2	0.004	0.66	0.0	0.06	12.13	0.00	2.388	4.21	0.00	3.8	96.2	0.0	-2.50	0.48	0.82	4.06	3.2	0.005	0.62	0.0	0.05	15.20	0.00	2.173	6.37	1.72	5.5	94.5	0.0	-2.92	1.34	0.48	0.84	4.29	4060	540	5	0	0	0	0	logfile
✔	7M62	23687	2022-11-29	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile

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