Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DHM	27436	2023-11-15	2022-06-27	2.73	3.45	2.74	3.3	0.006	0.76	0.0	0.04	12.98	0.01	2.002	5.25	0.65	1.7	98.3	0.0	0.74	0.71	0.83	3.56	3.2	0.003	0.56	0.0	0.04	14.07	0.00	1.964	3.96	0.65	1.7	98.3	0.0	3.60	1.22	0.63	0.87	3.06	11698	734	6	0	5	91	5900	logfile
✔	7XHo	33197	2023-11-18	2022-04-09	3.29	3.57	3.30	3.5	0.004	0.91	2.0	0.05	17.66	0.00	1.860	19.54	0.78	6.7	93.0	0.3	-2.33	0.74	0.72	1.32	3.5	0.004	0.82	0.0	0.04	18.06	0.00	2.166	20.50	0.48	8.0	91.9	0.1	-1.03	1.38	0.76	0.78	1.37	22243	2876	17	0	0	0	0	logfile
✔	6T0U	10359	2023-11-16	2019-10-03	3.12	3.20	3.13	3.2	0.005	0.68	0.0	0.05	14.30	0.01	2.273	3.95	5.25	3.4	96.6	0.0	-3.41	0.68	0.86	3.55	3.2	0.003	0.52	0.0	0.04	15.65	0.00	2.119	7.98	0.13	3.5	96.5	0.0	0.33	0.59	0.68	0.87	2.92	14176	1695	4	23	0	0	0	logfile
✔	6iYC	9751	2023-11-15	2018-12-14	2.6	2.84	—	2.9	0.011	1.20	0.0	0.07	11.41	0.01	2.053	3.52	0.88	7.5	92.3	0.2	-3.74	0.71	0.85	3.81	2.8	0.003	0.74	0.0	0.05	15.90	0.00	2.094	7.72	2.37	5.5	94.4	0.1	0.17	1.29	0.71	0.87	2.73	11037	1355	14	0	26	0	0	logfile
✔	7CN1	30413	2023-11-13	2020-07-29	3.7	3.74	—	3.7	0.008	0.78	0.0	0.05	13.72	0.00	2.147	16.07	0.32	10.2	89.8	0.0	-3.65	0.47	0.79	1.71	3.7	0.002	0.60	0.0	0.04	15.22	0.00	2.206	8.47	0.32	5.1	94.9	0.0	0.32	0.61	0.48	0.75	1.56	6290	822	6	0	3	0	0	logfile
✔	7WHK	32503	2023-11-20	2021-12-30	3.01	2.59	—	3.1	0.004	0.70	1.0	0.05	11.56	0.01	2.208	7.01	6.30	5.6	94.1	0.3	-3.45	0.78	0.76	2.28	3.0	0.003	0.74	0.0	0.05	14.08	0.00	2.041	11.38	0.41	6.3	93.6	0.0	-1.41	0.71	0.79	0.82	2.57	29150	3697	11	0	28	0	0	logfile
✔	7YTD	34086	2023-11-18	2022-08-14	3.71	4.26	3.90	4.0	0.005	0.96	12.0	0.08	14.78	0.01	1.188	29.57	4.37	8.6	90.5	0.9	-1.91	0.77	0.76	1.47	4.0	0.004	0.78	0.0	0.05	15.77	0.00	2.049	18.76	0.53	7.6	92.4	0.0	-1.35	0.67	0.78	0.79	1.52	21693	2777	25	0	10	0	0	logfile
✔	7TW2	26148	2023-11-15	2022-02-06	4.8	4.73	—	3.9	0.003	0.75	0.0	0.04	13.68	0.01	2.177	9.73	0.07	2.2	97.8	0.0	-1.27	0.66	0.72	—	3.8	0.003	0.70	0.0	0.04	13.78	0.00	2.110	14.59	0.00	3.2	96.8	0.0	1.34	1.65	0.67	0.76	—	12838	1619	4	0	2	0	0	logfile
✔	7RMH	24570	2023-11-14	2021-07-27	3.1	4.02	3.03	3.9	0.012	0.75	0.0	0.05	13.42	0.01	2.290	2.56	0.00	4.1	95.9	0.0	-1.32	0.74	0.80	2.69	3.9	0.003	0.59	0.0	0.04	15.00	0.00	2.190	5.12	0.14	3.4	96.5	0.1	0.50	0.53	0.69	0.82	2.43	7434	986	6	0	1	0	0	logfile
✔	7UN6	26614	2023-11-14	2022-04-09	3.3	3.43	3.19	3.6	0.004	0.60	0.0	0.04	13.87	0.00	1.879	11.49	0.00	5.0	95.0	0.0	-0.89	0.49	0.57	2.11	3.6	0.003	0.64	0.0	0.04	16.12	0.00	2.100	11.27	0.20	5.0	95.0	0.0	-0.07	0.70	0.57	0.70	1.64	9042	1118	3	0	0	0	0	logfile
✔	7VHJ	31996	2023-11-19	2021-09-22	4.2	4.29	—	4.2	0.004	0.65	0.0	0.04	13.11	0.00	2.109	15.60	0.07	8.2	91.8	0.0	-3.85	0.76	0.79	—	4.2	0.004	0.67	0.0	0.04	13.43	0.00	2.034	14.92	0.00	7.7	92.3	0.0	-1.62	0.56	0.76	0.79	—	25353	3257	3	0	0	0	0	logfile
✔	7MLU	23910	2023-11-18	2021-04-29	4.1	5.27	—	4.2	0.004	0.88	0.0	0.05	9.48	0.01	2.271	7.00	0.21	6.4	93.6	0.0	-4.41	0.72	0.65	—	4.2	0.003	0.75	0.0	0.04	11.77	0.00	2.148	19.54	0.00	6.7	93.3	0.0	-1.63	1.32	0.75	0.78	—	21886	2746	20	0	5	0	0	logfile
✔	6LVD	0990	2023-11-19	2020-02-02	3.2	3.35	3.22	3.3	0.009	0.93	0.0	0.06	9.36	0.01	2.223	3.32	0.31	6.1	93.9	0.0	-3.48	0.80	0.87	4.98	3.3	0.004	0.59	0.0	0.04	13.44	0.00	2.087	7.39	0.10	4.6	95.4	0.0	-0.81	0.58	0.79	0.88	3.77	27628	3464	8	0	0	0	0	logfile
✔	7Y5T	33624	2023-11-15	2022-06-17	2.9	2.28	2.95	3.0	0.007	1.02	0.0	0.19	10.73	0.01	2.265	3.95	0.18	5.1	94.9	0.0	-3.37	0.64	0.84	4.18	3.0	0.003	0.73	0.0	0.07	15.35	0.00	2.192	6.16	1.77	4.4	95.6	0.0	0.75	2.26	0.66	0.86	3.10	10844	1314	13	0	27	0	0	logfile
✔	8HiK	34819	2023-11-14	2022-11-20	3.72	2.46	3.76	3.2	0.005	0.82	0.0	0.05	9.44	0.01	2.282	4.81	0.00	5.3	94.7	0.0	-3.54	0.66	0.63	1.53	2.2	0.005	0.78	0.0	0.04	14.64	0.00	2.107	18.03	0.56	7.5	92.5	0.0	-1.02	0.81	0.69	0.67	1.60	8238	1055	5	0	1	0	0	logfile
✔	8EFo	28086	2023-11-15	2022-09-08	2.8	2.69	2.95	3.0	0.004	0.85	0.0	0.06	8.02	0.01	2.241	5.81	0.00	1.5	98.5	0.0	-0.93	0.59	0.76	3.19	2.9	0.002	0.60	0.0	0.04	15.13	0.00	2.153	10.65	2.30	1.8	98.2	0.0	1.38	2.46	0.59	0.81	2.77	11708	1441	9	0	12	0	0	logfile
✔	8DTi	27699	2023-11-14	2022-07-25	3.8	3.87	—	3.8	0.006	0.66	0.0	0.04	13.31	0.00	2.196	4.70	0.00	2.9	97.1	0.0	1.82	0.81	0.76	2.21	3.8	0.002	0.55	0.0	0.04	15.22	0.00	2.204	8.20	0.43	2.3	97.7	0.0	1.89	0.40	0.82	0.79	2.07	9455	1258	4	0	2	0	0	logfile
✔	6VBV	21145	2023-11-20	2019-12-19	3.5	3.57	3.40	3.5	0.004	0.71	6.0	0.05	15.13	0.00	2.070	12.79	0.72	7.2	92.7	0.1	-3.09	0.67	0.77	2.13	3.5	0.003	0.68	0.0	0.04	16.92	0.00	2.108	11.84	0.34	6.5	93.5	0.0	-0.88	2.56	0.70	0.79	1.77	31676	4000	11	0	3	0	0	logfile
✔	7WHM	32504	2023-11-14	2021-12-31	2.7	2.86	—	2.8	0.006	0.64	0.0	0.05	13.85	0.00	2.155	6.30	0.00	3.1	96.9	0.0	0.15	0.43	0.87	4.68	2.8	0.003	0.51	0.0	0.04	15.95	0.00	2.260	5.62	0.56	2.3	97.7	0.0	1.45	1.11	0.40	0.84	3.69	9650	1214	1	0	0	0	0	logfile
✔	8HDo	34676	2023-11-14	2022-11-05	2.87	2.99	2.95	3.2	0.004	0.61	0.0	0.04	14.07	0.00	2.069	9.59	0.12	1.5	98.5	0.0	-1.31	0.63	0.77	1.80	3.2	0.003	0.57	0.0	0.04	15.87	0.00	2.140	10.02	3.11	2.5	97.5	0.0	0.97	1.03	0.65	0.85	2.74	8277	1028	5	0	8	0	0	logfile

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