Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QQ5	4618	2021-08-08	2019-02-17	3.9	3.85	—	3.8	0.007	1.07	0.0	0.06	14.96	0.01	1.792	4.89	0.00	8.7	91.3	0.0	-6.09	0.71	0.84	3.00	3.8	0.011	1.13	1.0	0.04	16.23	0.00	2.039	8.13	0.35	6.9	93.1	0.0	-1.83	0.49	0.73	0.82	2.24	11829	1476	4	0	8	0	0	logfile
✔	6iUG	9734	2021-08-08	2018-11-28	3.9	3.96	—	3.8	0.005	0.90	0.0	0.05	10.73	0.01	2.105	7.69	0.96	8.4	91.6	0.0	-3.83	0.72	0.83	1.84	3.8	0.004	0.79	0.0	0.05	14.35	0.00	1.942	16.93	0.26	8.8	91.2	0.0	-0.98	1.34	0.72	0.84	1.64	14585	1855	10	0	10	0	0	logfile
✔	6i00	0320	2021-08-09	2018-10-24	3.4	3.52	—	3.5	0.010	1.58	25.0	0.11	11.84	0.02	2.285	6.97	2.72	16.2	83.0	0.7	-5.33	0.58	0.91	4.26	3.5	0.005	0.75	0.0	0.05	15.44	0.00	2.200	7.10	0.64	12.4	87.3	0.4	-2.52	4.31	0.59	0.89	2.80	26712	3468	12	0	0	0	0	logfile
✔	6H5Q	0141	2021-08-11	2018-07-25	3.3	3.43	—	3.4	0.010	1.14	0.0	0.06	11.79	0.01	1.628	11.70	1.54	4.0	96.0	0.0	-4.31	0.46	0.87	4.00	3.4	0.003	0.67	0.0	0.04	15.05	0.00	2.181	10.93	0.51	3.7	96.3	0.0	0.60	0.65	0.50	0.88	2.46	46650	5715	30	90	0	0	0	logfile
✔	6E10	8951	2021-08-08	2018-07-08	4.16	4.27	—	4.2	0.008	1.16	11.0	0.07	10.73	0.01	1.063	10.25	1.07	5.8	93.8	0.4	-4.45	0.79	0.72	—	4.1	0.003	0.69	0.0	0.04	12.92	0.00	2.116	14.22	0.02	5.9	94.0	0.1	-0.47	1.52	0.82	0.79	—	57352	6823	34	0	359	0	0	logfile
✔	6N9Y	0383	2021-08-07	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	4.80	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.71	0.0	0.04	15.77	0.00	2.172	12.94	0.21	7.5	92.5	0.0	-1.13	1.78	0.40	0.79	—	4527	552	1	0	0	0	0	logfile
✔	5Hi9	6580	2021-08-09	2016-01-11	4.4	4.53	—	4.4	0.009	1.47	20.0	0.09	13.13	0.01	2.033	23.32	0.93	7.7	91.4	0.8	-4.25	0.73	0.73	—	4.4	0.003	0.82	0.0	0.04	13.59	0.00	2.101	17.75	0.05	7.6	92.4	0.0	-1.32	2.50	0.76	0.77	—	19636	2408	4	0	0	0	0	logfile
✔	6MCC	9067	2021-08-08	2018-08-31	3.9	4.31	—	4.2	0.006	1.04	0.0	0.15	14.86	0.01	2.290	5.94	1.08	8.5	91.5	0.0	-4.52	0.79	0.81	1.44	4.2	0.004	0.71	0.0	0.04	15.85	0.00	2.074	11.21	0.50	4.2	95.8	0.0	-1.31	0.75	0.80	0.80	1.24	14175	1494	3	115	1	0	0	logfile
✔	6HU7	0273	2021-08-07	2018-10-05	2.8	2.82	2.83	2.9	0.008	0.78	0.0	0.05	9.81	0.01	2.130	10.36	0.36	2.7	96.8	0.5	-3.47	0.49	0.84	4.61	2.9	0.003	0.62	0.0	0.04	15.55	0.00	2.181	9.54	1.82	2.4	97.3	0.3	2.75	1.61	0.53	0.86	3.75	4890	609	7	0	0	0	0	logfile
✔	5YQ7	6828	2021-08-09	2017-11-05	4.1	4.39	—	4.3	0.021	3.62	0.0	0.05	19.01	0.01	1.542	19.78	0.14	14.6	85.2	0.2	-4.34	0.63	0.77	—	4.3	0.005	2.22	0.0	0.04	17.15	0.00	1.843	12.39	0.07	12.9	87.1	0.0	-1.28	1.43	0.64	0.78	—	20009	2107	68	0	120	0	0	logfile
✔	6ACH	9592	2021-08-09	2018-07-26	3.2	3.31	—	3.3	0.068	1.82	0.0	0.07	12.66	0.01	1.393	2.80	1.03	7.2	92.8	0.0	-3.92	0.74	0.81	4.44	3.3	0.005	0.73	0.0	0.05	15.17	0.00	2.200	6.13	1.16	4.5	95.5	0.0	0.01	1.89	0.77	0.88	3.63	23240	2912	16	0	8	0	0	logfile
✔	5K11	8193	2021-08-08	2016-05-17	3.8	4.50	—	3.8	0.012	1.23	0.0	0.06	12.12	0.01	2.061	28.74	0.30	6.1	93.4	0.5	-4.89	0.80	0.59	1.53	3.8	0.004	0.88	0.0	0.05	15.12	0.00	2.190	19.53	0.00	3.6	96.3	0.1	0.10	1.44	0.90	0.84	1.19	6338	794	4	0	2	0	0	logfile
✔	5TV4	8469	2021-08-07	2016-11-08	4.2	4.13	—	4.0	0.007	1.26	0.0	0.06	12.31	0.01	1.511	45.35	0.48	13.1	86.2	0.7	-5.82	0.48	0.57	—	4.0	0.003	0.71	0.0	0.04	10.14	0.00	2.169	7.01	0.00	4.1	95.9	0.0	1.10	0.95	0.53	0.65	—	6548	1140	4	0	17	0	0	logfile
✔	6ACF	9590	2021-08-09	2018-07-26	3.0	3.14	—	3.1	0.008	0.95	0.0	0.06	10.12	0.01	2.280	3.14	0.68	5.0	95.0	0.0	-3.31	0.64	0.78	3.80	3.1	0.003	0.56	0.0	0.04	15.24	0.00	2.115	7.03	1.90	3.6	96.4	0.0	0.67	1.83	0.66	0.85	2.20	23144	2936	8	0	0	0	0	logfile
✔	6R91	4765	2021-08-11	2019-04-02	4.1	5.15	—	5.0	0.006	1.02	0.0	0.05	23.74	0.01	2.021	3.52	0.65	4.6	95.0	0.5	-0.83	0.64	0.52	—	5.0	0.004	0.71	0.0	0.04	24.01	0.00	1.794	17.29	0.00	8.2	91.7	0.1	-1.85	2.06	0.68	0.60	—	40540	1969	12	288	2	0	19063	logfile
✔	6CU7	7618	2021-08-07	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.4	0.003	0.67	0.0	0.05	14.26	0.00	2.181	15.38	0.48	14.5	85.5	0.0	-4.70	2.56	0.38	0.72	1.43	4140	600	10	0	0	0	0	logfile
✔	6CU8	7619	2021-08-07	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.3	0.005	0.79	0.0	0.06	12.77	0.00	2.126	17.71	0.97	19.2	80.8	0.0	-3.55	2.57	0.44	0.74	2.25	2880	410	10	0	0	0	0	logfile
✔	6DMW	7967	2021-08-09	2018-06-05	4.4	4.49	—	4.4	0.006	1.02	0.0	0.05	11.36	0.01	2.253	6.61	0.18	4.0	96.0	0.0	-3.38	0.59	0.66	—	4.4	0.003	0.71	0.0	0.04	13.14	0.00	2.139	9.08	0.00	3.7	96.3	0.0	0.55	0.98	0.72	0.85	—	20546	2562	6	0	3	0	0	logfile
✔	5WPQ	8881	2021-08-08	2017-08-07	3.64	3.71	—	3.7	0.005	0.96	0.0	0.05	11.37	0.01	2.310	2.00	0.49	5.9	94.1	0.0	-4.69	0.58	0.79	2.64	3.7	0.002	0.66	0.0	0.04	15.88	0.00	2.231	6.96	0.43	4.8	95.2	0.0	1.23	0.94	0.59	0.79	1.11	14889	1816	8	0	9	0	0	logfile
✔	6NT7	0504	2021-08-07	2019-01-28	4.0	4.27	—	4.1	0.008	0.91	0.0	0.05	14.13	0.01	2.238	5.64	0.00	6.2	93.8	0.0	-3.29	0.75	0.85	—	4.1	0.004	0.69	0.0	0.04	15.90	0.00	2.243	9.72	0.20	4.1	95.9	0.0	0.75	1.47	0.76	0.85	—	4729	588	3	0	1	0	0	logfile

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