Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7E0F	30931	2022-11-29	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.06	0.00	2.487	5.37	0.00	9.2	90.8	0.0	-3.48	0.60	0.40	0.81	3.91	2022	294	6	0	0	0	0	logfile
✔	7DWV	30887	2022-11-29	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	17.63	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.73	0.0	0.05	17.17	0.00	2.189	19.08	0.00	23.2	76.8	0.0	-5.96	1.50	0.41	0.75	2.79	2064	258	6	0	0	0	0	logfile
✔	7DoU	30800	2022-11-29	2020-12-17	3.0	3.06	—	3.1	0.003	0.67	0.0	0.05	12.73	0.00	2.164	9.00	0.00	9.8	90.2	0.0	-1.42	0.47	0.82	2.63	3.1	0.005	0.74	0.0	0.05	18.53	0.00	2.211	10.04	2.83	8.5	91.5	0.0	-0.98	1.37	0.49	0.85	2.42	2841	372	3	0	0	0	0	logfile
✔	7P16	13157	2022-11-29	2021-07-01	4.3	4.40	3.53	4.3	0.004	0.73	0.0	0.04	15.07	0.00	2.178	7.56	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.003	0.71	0.0	0.04	14.24	0.00	2.164	11.96	0.00	3.4	96.6	0.0	0.67	1.45	0.64	0.77	—	3621	444	3	0	1	0	0	logfile
✔	7SK0	25168	2022-11-29	2021-10-19	3.33	3.63	2.74	3.6	0.009	1.04	0.0	0.06	14.22	0.01	2.005	3.11	0.44	4.3	95.7	0.0	0.35	0.47	0.66	1.21	3.6	0.004	0.76	0.0	0.04	15.88	0.00	2.177	14.34	0.00	2.2	97.8	0.0	1.88	0.59	0.50	0.70	1.92	4168	514	4	0	7	0	0	logfile
✔	7P6B	13224	2022-11-29	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.006	0.70	0.0	0.05	17.13	0.00	2.107	8.18	0.65	4.7	95.3	0.0	-2.26	0.86	0.49	0.88	6.83	4060	540	5	0	0	0	0	logfile
✔	7P9U	13266	2022-11-29	2021-07-28	3.7	3.88	3.67	3.8	0.003	0.68	0.0	0.04	14.10	0.00	2.188	11.55	0.00	6.8	92.8	0.4	1.01	0.51	0.75	1.02	3.8	0.003	0.77	0.0	0.04	16.23	0.00	2.129	13.05	0.93	6.4	93.2	0.4	0.32	0.42	0.52	0.76	1.01	3943	503	2	0	0	0	0	logfile
✔	7P6A	13223	2022-11-29	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✔	7RYQ	24745	2022-11-29	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.37	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.77	0.0	0.04	14.07	0.00	2.218	15.93	0.00	6.6	93.4	0.0	-0.30	1.23	0.85	0.77	—	4332	527	1	0	0	0	0	logfile
✔	7SoA	25264	2022-11-29	2021-10-29	3.1	3.33	3.14	3.3	0.010	1.26	0.0	0.08	10.28	0.01	2.194	1.20	0.24	2.0	98.0	0.0	0.99	0.68	0.84	4.69	3.3	0.004	0.59	0.0	0.04	13.33	0.00	2.221	4.12	0.73	2.8	97.2	0.0	0.92	0.57	0.68	0.90	4.89	3850	477	5	0	6	0	0	logfile
✔	7SoD	25267	2022-11-29	2021-10-29	3.2	3.43	3.21	3.4	0.011	1.22	0.0	0.07	9.29	0.01	2.129	0.53	0.49	2.4	97.6	0.0	1.01	0.70	0.86	5.20	3.4	0.005	0.60	0.0	0.05	12.91	0.00	2.283	3.87	0.25	3.7	96.3	0.0	0.95	1.54	0.71	0.91	5.36	3830	473	5	0	7	0	0	logfile
✔	7VV6	32139	2022-11-29	2021-11-04	3.3	3.47	—	3.5	0.010	1.38	0.0	0.07	19.04	0.01	2.291	4.89	10.37	5.2	94.8	0.0	-4.22	0.62	0.83	1.64	3.4	0.003	0.62	0.0	0.04	17.02	0.00	2.186	6.88	0.41	2.2	97.8	0.0	3.08	0.69	0.63	0.85	2.36	2227	271	1	0	2	0	0	logfile
✔	7VV4	32137	2022-11-29	2021-11-04	2.97	3.66	—	3.7	0.007	1.20	2.0	0.09	14.57	0.01	1.600	16.21	3.75	4.2	95.8	0.0	-0.53	0.64	0.78	2.05	3.7	0.003	0.71	0.0	0.04	16.91	0.00	2.171	10.81	1.67	1.9	97.7	0.4	2.21	0.61	0.59	0.77	1.02	2181	269	3	0	1	0	0	logfile
✔	7VV0	32133	2022-11-29	2021-11-04	3.5	3.69	—	3.7	0.010	1.49	1.0	0.09	14.09	0.01	2.007	11.04	2.93	4.5	95.5	0.0	-3.44	0.65	0.80	1.76	3.7	0.003	0.61	0.0	0.04	15.15	0.00	2.257	7.66	0.84	4.2	95.8	0.0	2.03	1.25	0.64	0.80	1.65	2175	268	2	0	1	0	0	logfile
✔	7RNN	24580	2022-11-29	2021-07-29	2.86	2.05	—	3.2	0.008	0.80	0.0	0.14	14.23	0.00	1.929	6.74	0.55	3.4	96.6	0.0	-1.11	0.50	0.76	5.00	3.2	0.003	0.61	0.0	0.04	16.00	0.00	2.273	5.55	1.37	1.7	98.3	0.0	0.60	0.96	0.49	0.87	4.12	4000	540	2	0	2	0	0	logfile
✔	7MDW	23782	2022-11-29	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.54	0.0	0.04	12.63	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.002	0.55	0.0	0.04	14.37	0.00	2.292	11.94	0.28	7.7	92.3	0.0	-2.34	0.98	0.54	0.46	1.66	3392	435	4	0	1	0	0	logfile
✔	7PY2	13708	2022-11-29	2021-10-08	2.59	2.64	1.53	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.004	0.86	0.0	0.05	18.18	0.00	2.155	2.93	4.00	5.2	94.8	0.0	-3.95	1.38	0.50	0.88	5.97	2152	316	4	0	0	0	0	logfile
✔	7SL9	25195	2022-11-29	2021-10-23	3.5	3.79	—	3.7	0.005	0.95	0.0	0.06	13.95	0.01	2.259	4.68	0.40	5.9	94.1	0.0	-6.01	0.64	0.82	2.99	3.7	0.003	0.80	0.0	0.04	15.47	0.00	2.140	13.71	1.01	5.2	94.8	0.0	-1.21	1.23	0.64	0.82	1.53	4712	619	3	0	1	0	0	logfile
✔	7E3B	30978	2022-11-29	2021-02-08	4.2	4.05	—	4.0	0.006	0.81	0.0	0.05	13.26	0.00	2.241	16.63	0.00	8.2	91.8	0.0	-2.04	0.74	0.84	—	4.0	0.004	0.70	0.0	0.05	13.25	0.00	2.242	14.15	0.00	7.0	93.0	0.0	-1.24	0.40	0.74	0.83	—	3299	421	4	0	1	0	0	logfile
✔	7U14	26277	2022-11-29	2022-02-19	4.5	4.22	—	4.6	0.006	0.90	0.0	0.06	18.13	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.006	0.96	0.0	0.07	15.68	0.00	2.175	21.37	0.00	14.8	85.2	0.0	-4.22	1.65	0.34	0.63	—	3456	405	6	0	12	0	0	logfile

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