Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E2i	27837	2023-11-21	2022-08-15	3.04	3.45	3.37	3.1	0.004	0.60	0.0	0.04	15.47	0.00	1.925	7.78	0.83	1.8	98.2	0.0	1.23	0.64	0.64	1.06	3.2	0.003	0.61	0.0	0.04	15.97	0.00	1.939	12.77	0.31	3.4	96.6	0.0	0.90	0.87	0.65	0.66	0.98	92676	5836	6	0	114	0	46502	logfile
✔	8F4N	28855	2023-11-16	2022-11-11	2.95	3.15	3.04	3.2	0.004	0.55	0.0	0.04	9.96	0.00	2.278	8.28	2.12	1.9	98.1	0.0	2.00	0.72	0.80	3.23	3.2	0.003	0.54	0.0	0.04	15.74	0.00	2.085	9.21	2.18	1.4	98.6	0.0	2.01	1.26	0.69	0.85	2.77	15574	2043	2	0	0	0	0	logfile
✔	7LKP	23409	2023-11-16	2021-02-02	3.27	3.86	—	3.8	0.006	0.99	0.0	0.53	16.73	0.01	1.954	19.44	0.60	5.7	94.3	0.1	-0.89	0.62	0.74	1.42	3.8	0.003	0.85	0.0	0.08	17.16	0.00	2.139	9.28	0.30	4.2	95.7	0.1	0.10	1.19	0.73	0.83	1.78	15789	1941	4	0	29	0	0	logfile
✔	6XCN	22128	2023-11-20	2020-06-08	3.66	3.89	—	3.7	0.011	0.93	0.0	0.05	14.04	0.00	2.117	15.06	1.08	10.2	89.8	0.0	-4.10	0.78	0.87	2.22	3.7	0.003	0.62	0.0	0.04	15.07	0.00	2.151	9.06	0.23	5.1	94.9	0.0	-0.94	1.01	0.77	0.86	1.61	28662	3636	27	0	60	0	0	logfile
✔	6KoU	0740	2023-11-15	2019-08-13	2.43	3.57	—	3.0	0.004	0.67	1.0	0.13	11.88	0.00	2.006	4.07	0.00	3.0	97.0	0.0	-4.12	0.85	0.88	4.03	3.1	0.004	0.73	2.0	0.13	13.99	0.00	2.051	6.52	0.22	3.7	96.3	0.0	0.93	1.08	0.85	0.89	3.84	62209	3936	24	0	24	0	31225	logfile
✔	8F56	28861	2023-11-16	2022-11-11	2.98	3.18	3.09	3.2	0.004	0.56	0.0	0.04	9.89	0.00	2.200	9.91	2.64	2.2	97.8	0.0	1.81	0.68	0.75	1.96	3.2	0.003	0.58	0.0	0.04	16.16	0.00	2.177	10.36	3.00	1.8	98.2	0.0	1.79	1.29	0.70	0.86	2.19	15631	2039	2	0	0	0	0	logfile
✔	7B7U	12087	2023-11-19	2020-12-11	2.8	3.48	2.70	3.0	0.002	0.59	0.0	0.04	13.41	0.00	2.012	10.30	0.07	4.8	95.2	0.0	0.52	0.85	0.83	2.14	3.1	0.004	0.73	0.0	0.05	15.90	0.00	1.952	14.11	1.74	5.7	94.3	0.0	0.35	0.53	0.86	0.86	2.15	25091	3106	17	0	36	0	0	logfile
✔	7R1F	14240	2023-11-17	2022-02-02	2.58	3.46	2.66	2.8	0.009	0.62	0.0	0.04	12.26	0.00	2.035	6.90	2.31	3.5	96.5	0.0	0.37	0.91	0.84	3.29	2.9	0.003	0.66	0.0	0.04	13.87	0.00	2.021	9.54	1.52	2.8	97.2	0.0	0.77	2.67	0.92	0.90	3.30	18372	2177	11	44	4	6	0	logfile
✔	7oJ5	12938	2023-11-21	2021-05-13	2.4	2.43	—	2.4	0.002	0.53	0.0	0.04	16.61	0.00	2.177	1.81	1.95	1.6	98.4	0.0	-0.94	0.76	0.87	3.97	2.4	0.005	0.88	0.0	0.05	16.82	0.00	2.107	2.91	1.30	3.3	96.7	0.0	0.56	0.34	0.78	0.89	4.57	35323	4416	72	0	48	931	0	logfile
✔	7K8W	22733	2023-11-19	2020-09-27	3.6	4.04	—	3.9	0.008	1.05	2.0	0.06	12.60	0.01	1.483	19.55	0.26	6.1	93.8	0.1	-1.54	0.73	0.74	1.34	3.9	0.003	0.69	0.0	0.05	14.58	0.00	2.068	12.58	0.51	5.2	94.8	0.0	-0.41	1.08	0.72	0.73	0.71	26499	3403	23	0	60	0	0	logfile
✔	7K8Z	22736	2023-11-19	2020-09-27	3.5	4.17	—	4.0	0.007	0.86	0.0	0.05	12.54	0.00	2.103	12.77	1.06	4.5	95.4	0.1	-0.73	0.78	0.78	2.11	4.0	0.003	0.66	0.0	0.05	14.10	0.00	2.182	10.22	0.30	4.0	96.0	0.0	0.02	0.58	0.77	0.77	1.56	26015	3335	25	0	69	0	0	logfile
✔	7UKF	26579	2023-11-14	2022-04-01	3.02	3.32	3.06	3.3	0.004	0.61	0.0	0.04	11.50	0.00	2.290	9.17	0.00	2.3	97.7	0.0	1.20	0.58	0.83	3.02	3.3	0.004	0.54	0.0	0.04	14.31	0.00	2.159	9.11	0.24	3.3	96.7	0.0	1.79	0.30	0.57	0.84	2.25	8005	1036	5	0	5	0	0	logfile
✔	7PMK	13537	2023-11-18	2021-09-02	3.2	3.87	—	3.5	0.007	0.94	1.0	0.05	14.19	0.01	1.956	0.40	0.32	2.5	97.4	0.0	-0.22	0.78	0.73	1.95	3.5	0.004	0.63	0.0	0.04	15.47	0.00	1.888	8.86	0.27	2.6	97.4	0.0	1.05	1.19	0.78	0.78	1.54	74697	9129	29	69	13	0	0	logfile
✔	7UKD	26577	2023-11-14	2022-04-01	2.88	3.39	3.14	3.3	0.004	0.62	0.0	0.04	12.08	0.00	2.195	9.18	0.00	1.9	98.1	0.0	1.30	0.58	0.83	2.72	3.3	0.004	0.60	0.0	0.04	14.98	0.00	2.137	8.31	1.54	2.8	97.2	0.0	2.07	0.91	0.55	0.84	2.54	8000	1036	5	0	4	0	0	logfile
✔	7TZF	26208	2023-11-15	2022-02-15	2.4	2.00	2.20	2.3	0.010	0.53	0.0	0.04	14.56	0.00	2.252	4.74	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.003	0.60	0.0	0.04	16.83	0.00	2.219	6.21	1.43	1.8	98.2	0.0	0.83	0.83	0.57	0.83	4.87	10342	1272	13	0	19	25	0	logfile
✔	7WK3	32557	2023-11-19	2022-01-08	3.4	2.86	—	3.4	0.004	0.56	0.0	0.04	7.18	0.00	1.998	3.79	0.00	3.6	96.3	0.0	-2.17	0.65	0.57	1.77	3.3	0.004	0.72	0.0	0.04	14.28	0.00	2.082	10.49	0.36	3.3	96.7	0.0	-0.16	1.11	0.79	0.79	1.77	24805	3162	3	0	0	0	0	logfile
✔	8SAR	40277	2023-11-17	2023-04-01	3.82	3.32	3.81	3.2	0.006	1.11	0.0	0.06	14.50	0.01	2.247	4.44	0.00	7.4	92.2	0.4	-2.28	0.62	0.73	1.75	3.2	0.003	0.70	0.0	0.05	16.46	0.00	2.122	10.32	0.23	9.3	90.4	0.2	-1.81	0.45	0.62	0.74	1.36	19963	2465	27	0	63	0	0	logfile
✔	7SN3	25210	2023-11-19	2021-10-27	3.1	3.31	—	3.2	0.009	1.11	4.0	0.07	13.91	0.01	1.922	5.26	0.10	0.4	99.3	0.3	-0.84	0.75	0.82	3.32	3.2	0.004	0.66	0.0	0.05	14.83	0.00	2.126	8.24	0.24	4.5	95.4	0.1	0.17	0.95	0.76	0.87	2.93	27447	3451	15	0	54	0	0	logfile
✔	7L8Y	23240	2023-11-16	2021-01-01	4.2	4.30	4.00	4.2	0.021	1.67	1.0	0.14	10.19	0.02	2.188	2.09	0.00	2.4	97.6	0.0	1.02	0.71	0.81	—	4.2	0.003	0.65	0.0	0.04	13.29	0.00	2.138	8.28	0.00	3.0	97.0	0.0	0.20	0.91	0.71	0.82	—	15903	1739	27	0	292	0	0	logfile
✔	7WK2	32556	2023-11-19	2022-01-08	3.1	2.76	—	3.3	0.006	0.84	0.0	0.05	8.84	0.01	1.531	3.68	0.22	3.9	95.9	0.2	-3.00	0.72	0.68	1.17	3.3	0.005	0.79	0.0	0.05	14.91	0.00	2.124	12.06	0.76	4.0	96.0	0.0	-0.56	1.64	0.81	0.80	2.30	24879	3171	3	0	0	0	0	logfile

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