Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Mio	23858	2022-05-15	2021-04-17	3.48	3.47	—	3.4	0.011	1.32	0.0	0.05	17.55	0.01	2.363	4.23	0.34	4.3	95.7	0.0	-5.90	0.62	0.87	3.96	3.4	0.002	0.57	0.0	0.04	16.47	0.00	2.202	6.89	0.17	2.9	97.1	0.0	-0.76	0.60	0.65	0.88	2.72	22945	2636	8	0	29	0	0	logfile
✔	7P14	13155	2022-05-12	2021-07-01	3.66	3.82	3.50	3.8	0.004	0.64	0.0	0.04	16.56	0.00	2.295	7.45	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	3.8	0.010	1.29	0.0	0.04	16.81	0.00	2.211	10.58	0.25	4.1	95.9	0.0	2.57	1.37	0.61	0.79	1.52	3796	454	3	0	3	0	0	logfile
✔	7RB2	24392	2022-05-16	2021-07-05	3.27	3.28	—	3.2	0.008	0.74	0.0	0.05	14.45	0.00	2.075	7.81	0.33	5.1	94.9	0.0	-1.06	0.74	0.85	4.44	3.2	0.002	0.50	0.0	0.04	15.45	0.00	2.248	5.48	0.11	2.2	97.8	0.0	0.37	3.66	0.77	0.85	3.65	16386	2082	6	0	0	0	0	logfile
✔	6W8P	21577	2022-05-12	2020-03-21	3.6	4.05	—	4.0	0.004	0.76	0.0	0.04	18.04	0.00	2.236	15.49	10.89	10.4	89.6	0.0	-3.47	0.57	0.80	0.57	4.0	0.004	0.82	0.0	0.04	17.53	0.00	2.145	15.04	0.57	9.4	90.6	0.0	-0.35	2.10	0.57	0.79	0.70	6509	844	4	0	3	0	0	logfile
✔	6QFA	4542	2022-05-14	2019-01-09	2.49	2.59	2.43	2.6	0.005	0.75	0.0	0.06	10.73	0.01	1.973	5.44	0.00	1.8	98.2	0.0	-2.14	0.73	0.85	4.50	2.6	0.004	0.60	0.0	0.04	14.28	0.00	2.122	6.27	1.42	1.6	98.4	0.0	1.06	1.18	0.76	0.88	3.92	18755	2270	20	0	35	0	0	logfile
✔	7MR2	23954	2022-05-14	2021-05-07	4.3	4.72	—	4.5	0.003	0.75	0.0	0.05	14.96	0.01	2.257	5.86	0.00	5.1	94.9	0.0	-1.32	0.90	0.84	—	4.5	0.002	0.57	0.0	0.04	14.89	0.00	2.164	9.94	0.00	4.6	95.4	0.0	0.12	0.29	0.90	0.84	—	16671	2075	3	0	0	0	0	logfile
✔	7MR0	23952	2022-05-14	2021-05-07	3.7	4.10	—	4.0	0.003	0.81	0.0	0.05	15.13	0.01	2.284	4.19	0.44	5.8	94.2	0.0	-1.82	0.84	0.82	1.66	4.0	0.006	0.85	0.0	0.04	16.39	0.00	2.183	9.79	0.15	6.9	93.1	0.0	-0.39	0.34	0.85	0.83	1.76	19282	2400	3	0	0	0	0	logfile
✔	7MR1	23953	2022-05-14	2021-05-07	4.2	4.74	—	4.6	0.003	0.78	0.0	0.05	14.91	0.01	2.237	5.88	0.00	5.5	94.5	0.0	-1.78	0.85	0.84	—	4.6	0.003	0.63	0.0	0.04	14.81	0.00	2.187	11.35	0.00	6.1	93.9	0.0	-0.42	0.32	0.85	0.84	—	18473	2316	3	0	0	0	0	logfile
✔	7MR4	23956	2022-05-14	2021-05-07	4.5	4.68	—	4.5	0.004	0.86	0.0	0.05	16.97	0.01	2.014	7.27	0.00	5.4	94.6	0.0	-1.71	0.82	0.81	—	4.5	0.003	0.65	0.0	0.04	16.77	0.00	2.024	15.27	0.06	6.7	93.3	0.0	-0.39	0.53	0.82	0.83	—	17203	2057	5	33	0	0	0	logfile
✔	7MR3	23955	2022-05-15	2021-05-07	3.6	4.01	—	3.9	0.005	0.83	0.0	0.05	16.39	0.01	2.250	5.41	0.00	6.5	93.5	0.0	-1.62	0.83	0.82	1.78	3.9	0.003	0.60	0.0	0.04	17.80	0.00	2.195	9.47	0.21	6.3	93.7	0.0	0.14	0.29	0.83	0.83	1.50	23615	2854	5	40	0	0	0	logfile
✔	7EU8	31309	2022-05-14	2021-05-16	4.07	4.11	—	3.6	0.002	0.41	0.0	0.04	8.07	0.00	2.206	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.008	0.95	1.0	0.05	8.88	0.00	1.886	10.58	0.00	5.3	94.5	0.2	-0.12	1.36	0.79	0.69	—	18670	3010	8	0	8	0	0	logfile
✔	7EU7	31308	2022-05-14	2021-05-16	3.5	3.93	—	3.5	0.003	0.62	0.0	0.05	13.10	0.01	2.172	16.47	2.99	5.0	94.8	0.1	-0.02	0.83	0.83	2.68	3.4	0.002	0.53	0.0	0.04	13.49	0.00	2.183	7.75	0.00	4.7	95.3	0.0	0.13	0.30	0.84	0.85	2.39	21773	3134	8	0	25	0	0	logfile
✔	7LZi	23607	2022-05-13	2021-03-09	4.39	3.64	—	3.5	0.005	0.93	0.0	0.06	11.35	0.01	2.234	4.41	0.32	5.5	94.5	0.0	-4.68	0.74	0.74	—	3.5	0.005	0.78	0.0	0.05	13.45	0.00	2.101	18.06	0.00	6.3	93.7	0.0	-1.29	2.32	0.75	0.77	—	11782	1484	12	0	8	0	0	logfile
✔	7NJ0	12368	2022-05-13	2021-02-14	3.6	3.25	—	3.6	0.005	0.66	0.0	0.04	13.21	0.00	2.196	6.79	0.00	8.9	91.1	0.0	-2.82	0.74	0.83	2.02	3.6	0.009	1.04	1.0	0.04	15.84	0.00	1.777	10.50	0.13	4.8	95.1	0.1	-0.07	0.62	0.76	0.83	1.47	14330	1818	4	0	1	0	0	logfile
✔	7MoP	23925	2022-05-17	2021-05-03	3.3	3.06	3.23	3.2	0.006	0.80	0.0	0.05	14.72	0.01	2.120	6.16	1.33	2.8	97.2	0.0	-0.65	0.72	0.77	2.37	3.1	0.003	0.57	0.0	0.03	15.76	0.00	1.973	5.50	0.05	2.4	97.6	0.0	2.40	1.85	0.74	0.80	1.85	39049	2452	2	0	0	0	19681	logfile
✔	7Ki1	22883	2022-05-13	2020-10-22	2.5	2.57	2.46	2.6	0.008	0.93	0.0	0.06	15.54	0.00	2.257	8.66	0.28	3.5	96.5	0.0	-1.64	0.64	0.81	3.96	2.6	0.003	0.58	0.0	0.04	17.03	0.00	2.129	6.57	2.12	2.1	97.9	0.0	1.00	0.52	0.66	0.85	3.61	10265	1285	11	0	1	73	0	logfile
✔	7L7T	23218	2022-05-13	2020-12-30	3.7	4.14	3.63	3.9	0.022	1.65	0.0	0.15	10.10	0.01	2.419	0.49	0.00	1.2	98.8	0.0	0.98	0.85	0.85	2.90	3.9	0.003	0.59	0.0	0.04	13.43	0.00	2.233	6.68	0.19	2.5	97.5	0.0	1.32	0.74	0.85	0.84	2.35	15423	1770	39	0	102	0	0	logfile
✔	7L7U	23219	2022-05-13	2020-12-30	3.8	3.94	3.66	3.9	0.022	1.65	3.0	0.14	10.41	0.02	2.411	2.06	0.00	1.4	98.6	0.0	0.66	0.76	0.83	2.40	3.9	0.004	0.63	0.0	0.04	14.91	0.00	2.186	8.87	0.51	1.7	98.3	0.0	0.40	0.79	0.75	0.82	1.67	15258	1761	36	0	96	0	0	logfile
✔	7BZY	30263	2022-05-12	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.80	0.0	0.05	5.52	0.00	2.116	12.77	0.00	14.4	85.6	0.0	-2.69	1.26	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	7LYA	23590	2022-05-14	2021-03-06	2.91	3.17	2.99	3.2	0.007	0.67	0.0	0.04	27.51	0.00	1.325	3.67	0.16	2.5	97.5	0.0	-1.91	0.70	0.84	2.92	3.2	0.004	0.57	0.0	0.03	28.02	0.00	2.160	4.21	1.09	2.0	98.0	0.0	2.17	0.27	0.74	0.87	2.74	12098	767	10	293	0	0	0	logfile

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