Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KA4	22758	2021-08-08	2020-09-29	2.8	2.81	—	2.8	0.005	0.90	0.0	0.05	14.17	0.01	2.372	4.23	3.96	3.2	96.8	0.0	-2.20	0.77	0.82	2.71	2.9	0.003	0.57	0.0	0.04	15.90	0.00	2.159	9.73	2.61	3.4	96.6	0.0	1.64	1.43	0.78	0.83	1.49	10472	1372	4	0	0	0	0	logfile
✔	6X2N	22012	2021-08-10	2020-05-20	3.9	4.07	—	3.9	0.009	1.21	1.0	0.07	17.28	0.01	2.024	10.27	0.28	8.2	91.6	0.3	-2.89	0.76	0.77	0.56	3.9	0.004	0.73	0.0	0.04	18.27	0.00	2.002	17.03	0.52	7.5	92.5	0.0	-1.15	1.91	0.76	0.77	0.40	36079	4316	11	113	4	0	0	logfile
✔	7KEC	22838	2021-08-09	2020-10-10	3.84	4.76	—	3.9	0.013	1.80	0.0	0.09	14.29	0.02	2.280	0.74	2.39	9.0	89.9	1.0	-2.05	0.74	0.62	0.75	3.9	0.004	0.69	0.0	0.04	14.25	0.00	2.130	15.30	0.18	5.9	94.0	0.1	-0.75	0.67	0.86	0.80	0.86	22337	2875	18	0	57	0	0	logfile
✔	6YRG	10889	2021-08-09	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.13	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.9	0.011	1.28	4.0	0.04	13.36	0.00	2.135	15.85	0.00	8.8	91.1	0.1	-1.02	3.39	0.73	0.46	—	21992	2736	4	0	0	0	0	logfile
✔	7KEB	22837	2021-08-09	2020-10-10	3.48	4.20	—	3.8	0.013	1.80	4.0	0.10	13.02	0.02	2.421	0.83	0.13	9.1	90.3	0.6	-2.03	0.76	0.69	1.35	3.8	0.004	0.67	0.0	0.04	14.06	0.00	2.111	11.74	0.27	5.9	94.0	0.0	-0.32	1.64	0.83	0.77	1.39	22365	2875	18	0	59	0	0	logfile
✔	7KDK	22825	2021-08-09	2020-10-08	2.8	3.18	—	3.1	0.013	1.77	8.0	0.10	12.82	0.01	2.490	0.30	0.12	5.2	94.7	0.1	-0.98	0.75	0.77	3.89	3.1	0.003	0.61	0.0	0.04	15.16	0.00	2.155	6.14	1.37	2.9	97.1	0.0	0.35	1.25	0.76	0.82	3.22	23688	2916	21	0	63	0	0	logfile
✔	7CA3	30323	2021-08-09	2020-06-08	4.5	4.65	—	4.5	0.022	1.33	4.0	0.34	15.90	0.01	1.348	20.31	1.01	15.2	84.2	0.6	-4.98	0.62	0.69	—	4.5	0.003	0.89	1.0	0.12	13.82	0.00	1.938	19.46	0.00	10.0	89.9	0.1	-1.72	0.90	0.65	0.81	—	19862	1350	4	0	4	0	9307	logfile
✔	6PM4	20386	2021-08-08	2019-07-01	4.0	5.19	—	4.0	0.007	0.93	0.0	0.05	10.16	0.01	2.236	7.65	0.00	9.9	90.1	0.0	-4.33	0.76	0.85	—	3.8	0.003	0.81	0.0	0.04	12.63	0.00	2.201	18.71	0.27	6.0	94.0	0.0	-0.83	1.23	0.77	0.86	—	14055	1735	15	0	15	0	0	logfile
✔	7KDL	22826	2021-08-09	2020-10-08	2.96	3.49	—	3.4	0.013	1.75	2.0	0.10	12.25	0.01	1.479	0.09	0.27	6.1	93.6	0.3	-0.99	0.78	0.78	3.84	3.4	0.003	0.64	0.0	0.04	14.22	0.00	2.159	6.96	1.33	3.5	96.5	0.0	0.26	1.24	0.80	0.82	3.30	22365	2875	18	0	59	0	0	logfile
✔	7KDH	22822	2021-08-09	2020-10-08	3.33	3.92	—	3.8	0.013	1.76	3.0	0.19	13.00	0.01	1.454	0.43	0.56	7.3	92.3	0.4	-1.28	0.80	0.78	3.08	3.7	0.005	0.64	0.0	0.04	13.89	0.00	2.160	6.85	0.13	5.3	94.7	0.0	0.11	0.63	0.83	0.83	2.54	22698	2891	6	0	58	0	0	logfile
✔	7KE9	22835	2021-08-09	2020-10-10	3.08	3.62	—	3.5	0.013	1.73	0.0	0.09	12.05	0.01	2.491	0.11	0.04	5.8	94.0	0.2	-0.81	0.80	0.80	4.06	3.5	0.003	0.58	0.0	0.04	13.64	0.00	2.238	6.25	0.04	3.4	96.6	0.0	0.46	1.23	0.80	0.84	3.20	22365	2875	18	0	59	0	0	logfile
✔	7KEA	22836	2021-08-09	2020-10-10	3.33	3.98	—	3.8	0.013	1.82	6.0	0.09	13.63	0.01	1.103	0.37	1.24	7.2	92.4	0.4	-1.82	0.81	0.76	2.96	3.7	0.003	0.61	0.0	0.04	14.10	0.00	2.117	7.52	0.13	3.1	96.9	0.0	0.23	1.27	0.82	0.80	2.19	22351	2875	18	0	58	0	0	logfile
✔	7KE6	22832	2021-08-09	2020-10-10	3.1	3.68	—	3.6	0.013	1.75	4.0	0.10	13.65	0.01	2.558	0.15	1.02	6.5	93.2	0.3	-1.42	0.78	0.77	3.34	3.5	0.004	0.64	0.0	0.04	14.66	0.00	2.126	6.31	0.12	4.2	95.8	0.0	0.22	1.28	0.78	0.82	2.61	23688	2916	21	0	63	0	0	logfile
✔	7KE4	22831	2021-08-09	2020-10-10	3.21	3.83	—	3.6	0.013	1.77	8.0	0.10	13.76	0.01	2.519	0.13	1.06	6.7	92.9	0.4	-1.54	0.77	0.73	2.97	3.6	0.004	0.66	0.0	0.04	14.58	0.00	2.142	9.07	0.24	5.2	94.8	0.0	-0.26	1.31	0.82	0.82	2.26	23684	2916	21	0	63	0	0	logfile
✔	7KE8	22834	2021-08-09	2020-10-10	3.26	3.87	—	3.7	0.013	1.75	5.0	0.10	13.51	0.01	1.879	0.41	1.06	6.8	92.9	0.3	-1.50	0.78	0.75	3.20	3.7	0.003	0.62	0.0	0.04	14.39	0.00	2.099	7.10	0.20	4.1	95.9	0.0	0.03	1.28	0.82	0.83	2.45	23684	2916	21	0	63	0	0	logfile
✔	7L1V	23119	2021-08-07	2020-12-15	3.0	3.37	—	3.3	0.008	1.06	0.0	0.06	12.85	0.01	2.306	3.23	0.30	2.8	97.2	0.0	-2.91	0.71	0.86	4.16	3.3	0.005	0.68	0.0	0.04	15.62	0.00	2.215	7.26	2.02	2.7	97.3	0.0	0.38	0.95	0.73	0.88	3.34	9606	1253	7	0	1	0	0	logfile
✔	7KDi	22823	2021-08-09	2020-10-08	3.26	3.83	—	3.7	0.013	1.69	2.0	0.09	12.53	0.01	2.522	0.15	0.27	6.1	93.8	0.1	-0.76	0.79	0.78	3.13	3.7	0.004	0.64	0.0	0.04	14.03	0.00	2.142	6.46	0.12	4.3	95.6	0.0	0.28	0.68	0.82	0.84	2.62	23688	2916	21	0	63	0	0	logfile
✔	7K24	22642	2021-08-08	2020-09-08	2.9	3.02	2.70	3.0	0.005	0.77	0.0	0.05	18.36	0.01	2.240	10.55	12.54	7.6	91.8	0.6	-3.66	0.53	0.85	3.11	3.0	0.003	0.61	0.0	0.04	17.65	0.00	2.191	9.71	3.60	7.7	92.3	0.0	-1.06	1.66	0.51	0.86	2.88	13750	1765	5	0	0	0	0	logfile
✔	7KDJ	22824	2021-08-09	2020-10-08	3.49	4.11	—	3.8	0.012	1.68	1.0	0.09	12.17	0.01	1.477	0.23	0.49	6.4	93.2	0.4	-0.75	0.80	0.79	2.84	3.8	0.003	0.59	0.0	0.04	13.36	0.00	2.193	5.95	0.13	3.5	96.5	0.0	0.67	1.21	0.84	0.85	2.15	22365	2875	18	0	59	0	0	logfile
✔	7BYM	30245	2021-08-08	2020-04-23	3.1	3.49	—	3.6	0.009	1.28	0.0	0.05	19.14	0.01	1.997	22.83	8.67	1.4	98.4	0.2	-0.33	0.46	0.48	1.34	3.6	0.003	0.57	0.0	0.03	17.15	0.00	2.167	8.90	0.06	1.2	98.8	0.0	2.76	0.98	0.58	0.77	1.46	16411	2000	16	0	11	4	0	logfile

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