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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NT7 | 0504 | 2023-12-07 | 2019-01-28 | 4.0 | 4.27 | — | 4.1 | 0.008 | 0.90 | 0.0 | 0.05 | 14.87 | 0.01 | 2.238 | 5.64 | 0.00 | 6.2 | 93.8 | 0.0 | -3.29 | 0.75 | 0.85 | — | 4.1 | 0.004 | 0.64 | 0.0 | 0.04 | 16.26 | 0.00 | 2.197 | 9.51 | 0.20 | 3.2 | 96.8 | 0.0 | 0.95 | 1.19 | 0.75 | 0.85 | — | 4729 | 588 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6VYM | 21464 | 2023-12-10 | 2020-02-27 | 3.7 | 3.94 | — | 3.9 | 0.006 | 0.88 | 0.0 | 0.06 | 14.09 | 0.01 | 2.339 | 6.48 | 0.00 | 7.1 | 92.9 | 0.0 | -4.56 | 0.76 | 0.82 | 2.15 | 3.9 | 0.003 | 0.70 | 0.0 | 0.05 | 16.12 | 0.00 | 2.186 | 11.66 | 0.76 | 6.3 | 93.7 | 0.0 | -0.08 | 1.18 | 0.74 | 0.81 | 1.99 | 13573 | 1778 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MX2 | 24070 | 2023-12-08 | 2021-05-18 | 3.64 | 3.96 | — | 4.0 | 0.008 | 1.06 | 0.0 | 0.04 | 15.72 | 0.01 | 2.021 | 6.23 | 0.40 | 4.1 | 95.9 | 0.0 | 1.47 | 0.76 | 0.86 | 1.86 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 15.73 | 0.00 | 2.208 | 4.76 | 0.00 | 4.1 | 95.8 | 0.1 | 1.56 | 0.28 | 0.75 | 0.86 | 1.68 | 6159 | 875 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7RB3 | 24393 | 2023-12-07 | 2021-07-05 | 3.1 | 3.16 | — | 3.2 | 0.008 | 1.17 | 1.0 | 0.05 | 16.70 | 0.01 | 2.021 | 8.07 | 1.30 | 3.0 | 97.0 | 0.0 | 1.44 | 0.79 | 0.85 | 2.33 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 16.41 | 0.00 | 2.162 | 4.57 | 0.78 | 2.3 | 97.7 | 0.0 | 1.87 | 0.31 | 0.79 | 0.85 | 2.08 | 5110 | 730 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7QE5 | 13930 | 2023-12-09 | 2021-12-01 | 4.7 | 4.93 | 4.36 | 4.7 | 0.013 | 2.06 | 17.0 | 0.11 | 14.37 | 0.02 | 2.209 | 6.87 | 1.14 | 4.8 | 95.0 | 0.3 | -2.59 | 0.65 | 0.66 | — | 4.8 | 0.003 | 0.66 | 0.0 | 0.04 | 13.43 | 0.00 | 2.006 | 12.70 | 0.00 | 4.8 | 95.1 | 0.1 | 0.16 | 1.13 | 0.65 | 0.69 | — | 11652 | 740 | 2 | 0 | 0 | 0 | 5932 | logfile |
✔ | 6W2T | 21530 | 2023-12-08 | 2020-03-08 | 3.36 | 3.35 | 3.39 | 3.3 | 0.012 | 1.53 | 3.0 | 0.09 | 21.42 | 0.00 | 1.933 | 5.07 | 1.45 | 11.4 | 87.1 | 1.5 | -4.58 | 0.68 | 0.73 | 1.93 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 21.54 | 0.00 | 2.094 | 11.79 | 0.47 | 8.1 | 91.9 | 0.0 | -1.47 | 1.23 | 0.77 | 0.78 | 1.51 | 109778 | 8254 | 46 | 2036 | 2 | 0 | 0 | logfile |
✔ | 7SQT | 25394 | 2023-12-07 | 2021-11-06 | 4.0 | 7.13 | 4.01 | 3.5 | 0.010 | 0.70 | 0.0 | 0.05 | 15.78 | 0.01 | 0.902 | 2.31 | 1.25 | 2.5 | 97.5 | 0.0 | 1.39 | 0.94 | 0.84 | — | 3.4 | 0.003 | 0.76 | 0.0 | 0.04 | 15.49 | 0.00 | 2.135 | 11.69 | 0.18 | 2.3 | 97.7 | 0.0 | 1.50 | 3.03 | 0.93 | 0.86 | — | 107136 | 13752 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VR1 | 32096 | 2023-12-09 | 2021-10-21 | 3.4 | 3.67 | — | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 13.99 | 0.00 | 2.253 | 7.05 | 0.00 | 5.8 | 94.2 | 0.0 | -0.76 | 0.68 | 0.84 | 1.98 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 15.71 | 0.00 | 2.229 | 8.30 | 0.30 | 5.9 | 94.1 | 0.0 | 0.75 | 0.35 | 0.69 | 0.85 | 1.55 | 9522 | 1196 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VGR | 31977 | 2023-12-10 | 2021-09-18 | 2.7 | 3.11 | — | 3.0 | 0.002 | 0.55 | 0.0 | 0.04 | 10.59 | 0.00 | 2.259 | 7.72 | 0.18 | 5.6 | 94.2 | 0.2 | -0.41 | 0.65 | 0.76 | 2.17 | 3.0 | 0.003 | 0.70 | 0.0 | 0.04 | 15.49 | 0.00 | 2.102 | 8.89 | 2.68 | 7.3 | 92.7 | 0.0 | 0.39 | 0.75 | 0.66 | 0.82 | 2.73 | 9872 | 1272 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZDZ | 14678 | 2023-12-09 | 2022-03-30 | 4.3 | 4.37 | 4.35 | 4.3 | 0.003 | 0.86 | 0.0 | 0.05 | 15.05 | 0.00 | 2.192 | 12.57 | 0.35 | 11.1 | 88.6 | 0.3 | -1.61 | 0.64 | 0.70 | — | 4.3 | 0.003 | 0.71 | 0.0 | 0.05 | 14.65 | 0.00 | 2.148 | 13.10 | 0.00 | 12.1 | 87.6 | 0.2 | -1.48 | 1.79 | 0.64 | 0.71 | — | 10369 | 1292 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6TZ2 | 20587 | 2023-12-10 | 2019-08-09 | 3.5 | 3.68 | — | 3.6 | 0.009 | 0.95 | 0.0 | 0.05 | 11.97 | 0.01 | 2.073 | 5.14 | 0.47 | 5.3 | 94.6 | 0.1 | -3.55 | 0.40 | 0.85 | 3.02 | 3.6 | 0.004 | 0.60 | 0.0 | 0.04 | 15.66 | 0.00 | 1.854 | 10.58 | 0.54 | 4.5 | 95.5 | 0.0 | -0.18 | 0.67 | 0.41 | 0.86 | 1.96 | 15608 | 1709 | 6 | 90 | 4 | 0 | 0 | logfile |
✔ | 8BX5 | 16308 | 2023-12-09 | 2022-12-07 | 4.2 | 4.41 | 4.00 | 4.3 | 0.003 | 0.78 | 1.0 | 0.06 | 14.22 | 0.01 | 2.218 | 14.11 | 0.63 | 3.9 | 96.1 | 0.0 | -0.69 | 0.60 | 0.73 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.05 | 13.29 | 0.00 | 2.179 | 15.73 | 0.24 | 4.2 | 95.7 | 0.1 | -0.65 | 2.12 | 0.64 | 0.76 | — | 12527 | 1630 | 13 | 0 | 4 | 4 | 0 | logfile |
✔ | 5K10 | 8192 | 2023-12-09 | 2016-05-17 | 3.8 | 4.74 | — | 3.8 | 0.009 | 0.93 | 0.0 | 0.06 | 12.22 | 0.02 | 2.138 | 33.42 | 0.30 | 6.9 | 92.6 | 0.5 | -4.07 | 0.80 | 0.57 | 0.98 | 3.8 | 0.004 | 0.84 | 0.0 | 0.04 | 16.04 | 0.00 | 2.197 | 24.77 | 0.15 | 3.7 | 96.0 | 0.3 | -0.14 | 1.89 | 0.92 | 0.86 | 1.02 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8WX3 | 37899 | 2023-12-08 | 2023-10-27 | 2.83 | 2.64 | 2.76 | 2.9 | 0.003 | 0.70 | 0.0 | 0.04 | 12.63 | 0.00 | 2.206 | 5.93 | 0.00 | 3.3 | 96.5 | 0.2 | 0.51 | 0.41 | 0.73 | 2.66 | 2.8 | 0.003 | 0.61 | 0.0 | 0.04 | 15.36 | 0.00 | 2.237 | 7.64 | 2.17 | 3.1 | 96.7 | 0.2 | 1.45 | 1.34 | 0.55 | 0.84 | 2.58 | 7498 | 974 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A06 | 15051 | 2023-12-07 | 2022-05-26 | 4.0 | 3.63 | 3.78 | 3.8 | 0.003 | 0.56 | 0.0 | 0.05 | 13.75 | 0.00 | 2.201 | 6.79 | 0.73 | 2.8 | 97.2 | 0.0 | -0.86 | 0.27 | 0.78 | — | 3.7 | 0.004 | 0.65 | 0.0 | 0.05 | 17.25 | 0.00 | 2.290 | 6.79 | 0.00 | 4.8 | 95.2 | 0.0 | -1.23 | 0.40 | 0.27 | 0.80 | — | 1185 | 147 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CYF | 30499 | 2023-12-09 | 2020-09-03 | 3.15 | 2.98 | — | 3.3 | 0.009 | 1.28 | 5.0 | 0.07 | 11.57 | 0.01 | 1.890 | 5.78 | 1.90 | 9.3 | 90.7 | 0.0 | -6.27 | 0.61 | 0.83 | 4.14 | 3.2 | 0.003 | 0.76 | 0.0 | 0.04 | 15.09 | 0.00 | 2.092 | 7.60 | 0.48 | 6.2 | 93.8 | 0.0 | -0.61 | 1.22 | 0.62 | 0.85 | 2.26 | 9996 | 1329 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7SAT | 24956 | 2023-12-08 | 2021-09-23 | 3.9 | 3.85 | 3.80 | 3.8 | 0.004 | 0.76 | 0.0 | 0.04 | 14.44 | 0.00 | 2.080 | 15.57 | 0.28 | 7.4 | 92.6 | 0.0 | 0.06 | 0.61 | 0.77 | 1.82 | 3.8 | 0.004 | 0.87 | 0.0 | 0.04 | 17.27 | 0.00 | 2.168 | 17.07 | 0.85 | 5.8 | 94.2 | 0.0 | 0.34 | 0.65 | 0.62 | 0.77 | 1.42 | 6581 | 822 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EiB | 31145 | 2023-12-08 | 2021-03-30 | 3.0 | 2.24 | — | 2.0 | 0.005 | 0.86 | 0.0 | 0.05 | 12.65 | 0.01 | 2.306 | 3.38 | 0.27 | 2.0 | 98.0 | 0.0 | -0.34 | 0.74 | 0.75 | 3.17 | 2.0 | 0.004 | 0.65 | 0.0 | 0.04 | 16.05 | 0.00 | 2.132 | 10.34 | 2.02 | 2.4 | 97.6 | 0.0 | 1.21 | 1.20 | 0.74 | 0.77 | 1.90 | 7204 | 928 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CH0 | 30367 | 2023-12-10 | 2020-07-03 | 3.7 | 3.78 | — | 3.8 | 0.008 | 1.11 | 0.0 | 0.06 | 16.22 | 0.01 | 1.910 | 4.94 | 6.24 | 10.7 | 89.0 | 0.2 | -6.21 | 0.64 | 0.83 | 2.02 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 15.92 | 0.00 | 2.136 | 7.38 | 0.18 | 7.3 | 92.7 | 0.0 | -2.26 | 1.67 | 0.66 | 0.83 | 1.62 | 15856 | 2092 | 14 | 0 | 2 | 0 | 0 | logfile |
✔ | 6MGV | 9112 | 2023-12-09 | 2018-09-15 | 3.1 | 3.21 | 3.10 | 3.2 | 0.018 | 1.44 | 0.0 | 0.08 | 9.73 | 0.01 | 2.082 | 2.85 | 0.00 | 3.4 | 96.5 | 0.2 | -0.38 | 0.70 | 0.83 | 4.59 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 13.88 | 0.00 | 2.001 | 6.53 | 0.19 | 3.7 | 96.3 | 0.0 | 1.68 | 2.12 | 0.66 | 0.83 | 2.77 | 10150 | 1268 | 2 | 0 | 0 | 0 | 0 | logfile |