Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6K1H	9906	2022-07-03	2019-05-10	3.52	3.52	—	3.6	0.007	1.14	0.0	0.06	9.94	0.01	2.051	6.10	0.75	10.6	89.4	0.0	-6.37	0.60	0.77	2.05	3.5	0.005	0.83	0.0	0.04	15.20	0.00	2.057	14.03	0.83	9.5	90.5	0.0	-2.57	1.68	0.62	0.80	1.73	11556	1533	9	0	3	0	0	logfile
✔	6HXX	0297	2022-07-04	2018-10-18	3.4	3.76	3.51	3.7	0.008	1.14	0.0	0.07	12.31	0.01	1.586	8.35	0.28	8.1	91.9	0.0	-3.79	0.53	0.84	2.51	3.7	0.003	0.68	0.0	0.04	16.36	0.00	2.151	12.77	0.38	7.5	92.5	0.0	-0.23	1.27	0.56	0.86	2.05	65765	7840	70	175	0	0	0	logfile
✔	6QJH	4563	2022-07-02	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.31	0.78	2.85	1302	177	3	0	0	0	0	logfile
✔	6SEG	10155	2022-07-03	2019-07-30	3.1	3.19	—	3.2	0.006	0.86	0.0	0.05	27.88	0.01	2.283	3.10	0.00	1.3	98.7	0.0	-3.47	0.66	0.79	3.38	3.2	0.004	0.60	0.0	0.03	29.04	0.00	2.004	8.15	0.17	1.5	98.5	0.0	1.18	0.37	0.67	0.81	2.48	11689	728	10	290	0	0	0	logfile
✔	6DZP	8937	2022-07-06	2018-07-05	3.42	3.50	—	3.4	0.012	1.08	1.0	0.06	15.97	0.01	1.028	6.77	0.60	9.8	89.2	1.0	-4.67	0.79	0.82	3.24	3.4	0.005	0.62	0.0	0.03	15.87	0.00	2.045	8.79	0.53	5.1	94.8	0.1	-0.82	3.45	0.81	0.85	2.30	98097	3715	34	3237	0	0	0	logfile
✔	6N09	9313	2022-07-03	2018-11-06	3.5	3.67	—	3.6	0.009	0.86	0.0	0.06	9.20	0.01	2.233	6.30	0.20	3.7	96.3	0.0	-3.46	0.80	0.85	3.84	3.6	0.005	0.71	0.0	0.05	14.91	0.00	2.023	15.03	0.67	2.6	97.4	0.0	-0.15	3.19	0.80	0.86	3.10	60325	8162	60	0	0	0	0	logfile
✔	5T7V	8369	2022-07-05	2016-09-06	3.6	3.63	—	3.6	0.008	0.98	0.0	0.05	16.93	0.01	2.118	3.83	0.38	11.8	88.1	0.1	-5.19	0.74	0.75	3.17	3.6	0.008	0.75	0.0	0.04	17.20	0.00	1.891	9.84	0.18	10.3	89.7	0.0	-3.74	1.19	0.77	0.80	2.34	126001	4152	44	4375	17	0	0	logfile
✔	6RQL	4984	2022-07-08	2019-05-16	2.9	2.93	—	3.0	0.009	1.09	1.0	0.06	12.93	0.01	1.977	6.72	0.74	8.3	91.7	0.0	-4.74	0.60	0.67	2.47	2.9	0.004	0.69	0.0	0.04	17.16	0.00	2.124	10.61	3.45	6.3	93.7	0.0	-0.91	1.92	0.69	0.73	2.10	51626	6246	20	84	0	0	0	logfile
✔	5YWC	6852	2022-07-08	2017-11-29	4.3	4.48	4.24	4.3	0.004	0.80	0.0	0.04	14.47	0.00	2.030	14.78	7.97	4.4	95.3	0.4	-1.76	0.66	0.75	—	4.3	0.004	0.75	0.0	0.04	12.95	0.00	1.943	15.75	0.00	4.3	95.7	0.1	0.97	3.33	0.68	0.79	—	51108	6588	16	0	20	0	0	logfile
✔	6PP6	20420	2022-07-06	2019-07-05	4.28	4.54	—	4.3	0.004	0.71	0.0	0.04	11.88	0.00	2.179	3.17	0.00	0.6	99.4	0.0	-1.13	0.79	0.78	—	4.3	0.003	0.57	0.0	0.04	12.51	0.00	1.914	11.94	0.06	4.0	96.0	0.0	-0.92	1.51	0.81	0.81	—	32106	2062	13	0	12	0	16126	logfile
✔	6E0F	8946	2022-07-04	2018-07-06	3.7	3.77	—	3.9	0.010	1.01	0.0	0.07	9.64	0.01	1.999	13.59	0.00	8.1	91.3	0.6	-4.79	0.71	0.79	3.23	3.9	0.011	1.16	1.0	0.05	16.10	0.00	2.149	20.92	0.62	9.2	90.8	0.0	-1.72	0.83	0.71	0.79	2.04	13650	1740	10	0	0	0	0	logfile
✔	6QiK	4560	2022-07-05	2019-01-20	3.1	3.35	—	3.3	0.014	0.99	2.0	0.06	15.84	0.01	1.872	3.56	0.80	8.3	91.5	0.2	-4.17	0.84	0.86	3.77	3.2	0.006	0.62	0.0	0.04	16.06	0.00	2.046	7.67	0.52	6.3	93.7	0.0	-1.43	0.43	0.85	0.88	3.22	128569	6843	53	3423	217	0	0	logfile
✔	5J8V	8073	2022-07-04	2016-04-08	4.9	4.81	—	4.7	0.024	2.66	214.0	0.16	10.17	0.01	1.145	73.71	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	1.16	0.0	0.04	8.22	0.00	2.233	4.75	0.32	11.9	86.0	2.1	-1.61	0.83	0.74	0.72	—	73616	13812	4	0	0	0	0	logfile
✔	6G4S	4348	2022-07-08	2018-03-28	4.0	4.37	—	3.9	0.005	1.05	0.0	0.07	21.38	0.01	1.911	1.77	0.00	8.6	91.2	0.2	-3.72	0.72	0.69	—	3.9	0.004	0.71	0.0	0.03	21.09	0.00	2.009	7.98	0.00	11.6	88.4	0.0	-0.68	2.10	0.81	0.73	—	48967	5224	33	1613	768	0	0	logfile
✔	6HV8	0287	2022-07-03	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	9.02	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.84	0.0	0.05	12.81	0.00	2.114	14.96	0.00	13.7	86.3	0.0	-2.66	1.01	0.74	0.71	—	9206	1184	2	0	2	0	0	logfile
✔	6KFH	9973	2022-07-04	2019-07-07	3.6	3.70	—	3.7	0.007	0.73	0.0	0.05	14.75	0.00	2.255	9.85	0.00	12.3	87.7	0.0	-3.15	0.66	0.82	0.94	3.7	0.004	0.74	0.0	0.04	17.70	0.00	2.195	9.92	0.45	8.4	91.6	0.0	0.01	0.62	0.63	0.82	1.21	20840	2544	8	0	0	0	0	logfile
✔	3J8i	6179	2022-07-04	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	76.34	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	4.7	0.003	0.90	0.0	0.04	14.12	0.00	2.079	17.80	0.00	11.3	88.2	0.5	-2.07	1.75	0.65	0.71	—	14800	1875	10	0	10	0	0	logfile
✔	6SUF	10313	2022-07-02	2019-09-13	3.4	3.32	—	3.3	0.021	1.77	6.0	0.10	10.78	0.01	2.186	2.00	0.00	2.4	97.3	0.3	-0.46	0.80	0.80	2.93	3.3	0.007	0.84	4.0	0.04	14.93	0.00	1.536	13.62	0.14	4.0	96.0	0.0	0.36	1.31	0.82	0.84	2.72	108112	13607	6	0	0	0	0	logfile
✔	6DMR	7965	2022-07-04	2018-06-05	3.9	4.25	—	4.2	0.005	0.91	0.0	0.05	10.34	0.01	2.280	3.77	0.00	4.2	95.8	0.0	-4.22	0.62	0.70	1.82	4.1	0.002	0.62	0.0	0.04	14.97	0.00	2.278	6.88	0.10	3.1	96.9	0.0	-0.45	1.74	0.75	0.87	1.48	19412	2424	4	0	0	0	0	logfile
✔	6PBE	20291	2022-07-04	2019-06-13	3.78	4.21	—	4.1	0.006	1.02	0.0	0.05	16.23	0.01	2.248	4.10	1.18	8.2	91.8	0.0	-5.02	0.61	0.77	1.40	4.1	0.009	1.02	0.0	0.04	17.49	0.00	2.230	9.02	0.34	6.5	93.5	0.0	-1.38	1.91	0.62	0.78	1.39	19452	2416	8	0	8	0	0	logfile

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