Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6iFZ	9659	2022-05-14	2018-09-21	3.58	3.57	—	3.5	0.008	1.15	2.0	0.07	16.35	0.01	1.258	12.63	0.96	10.7	88.8	0.5	-5.16	0.72	0.80	2.37	3.5	0.005	0.88	0.0	0.04	17.56	0.00	1.532	15.97	0.21	8.4	91.5	0.1	-2.23	1.66	0.72	0.79	2.02	19185	2254	11	62	1	0	0	logfile
✔	6HRF	0260	2022-05-12	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	8.66	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.005	0.84	0.0	0.05	16.58	0.00	2.181	9.08	0.25	6.7	93.3	0.0	-3.41	3.72	0.37	0.78	3.35	3522	462	6	0	0	0	0	logfile
✔	6oiS	20080	2022-05-13	2019-04-09	3.6	3.71	—	3.6	0.009	1.05	0.0	0.06	10.80	0.01	2.315	5.76	0.68	4.2	95.8	0.0	-2.46	0.78	0.81	3.12	3.6	0.003	0.62	0.0	0.04	14.60	0.00	2.118	8.97	0.34	2.6	97.4	0.0	1.37	2.26	0.79	0.83	2.68	10732	1365	6	0	0	0	0	logfile
✔	6QS4	4621	2022-05-16	2019-02-20	4.2	7.28	4.28	6.5	0.009	1.07	0.0	0.06	10.54	0.01	2.235	8.01	0.10	8.4	91.6	0.0	-3.77	0.83	0.65	—	6.5	0.003	0.67	0.0	0.04	11.93	0.00	2.098	20.68	0.03	5.6	94.4	0.0	0.14	1.67	0.90	0.84	—	28839	3622	13	0	11	0	0	logfile
✔	6oUA	20200	2022-05-12	2019-05-04	4.18	4.32	—	4.3	0.008	1.37	1.0	0.07	13.97	0.01	2.294	7.13	2.35	17.4	82.3	0.3	-5.89	0.72	0.79	—	4.3	0.003	0.84	0.0	0.05	14.52	0.00	2.107	11.12	0.00	13.2	86.8	0.0	-1.96	1.15	0.72	0.77	—	5208	637	3	0	0	0	0	logfile
✔	6GC7	4382	2022-05-12	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.14	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.003	0.60	0.0	0.03	15.02	0.00	1.979	22.87	0.07	8.8	91.1	0.1	-1.90	1.64	0.91	0.86	—	54410	1738	17	1901	0	0	0	logfile
✔	6E1K	8956	2022-05-13	2018-07-10	3.3	3.68	3.47	3.7	0.019	1.76	1.0	0.08	13.49	0.01	2.047	10.41	1.50	11.4	88.3	0.3	-6.12	0.53	0.67	3.36	3.7	0.004	0.73	0.0	0.04	14.52	0.00	2.069	12.45	0.67	6.2	93.8	0.0	-1.98	0.76	0.58	0.67	1.69	11641	1450	10	0	21	2	0	logfile
✔	6KiV	9999	2022-05-16	2019-07-20	4.0	4.16	—	4.0	0.007	0.89	0.0	0.05	22.53	0.01	2.263	5.31	0.00	9.6	90.4	0.0	-3.80	0.75	0.75	—	4.0	0.003	0.68	0.0	0.04	24.16	0.00	2.058	13.11	0.19	6.4	93.6	0.0	-1.62	0.86	0.77	0.78	—	20719	1865	16	290	1	0	0	logfile
✔	6BCL	7082	2022-05-16	2017-10-20	3.54	3.64	—	3.6	0.008	0.96	0.0	0.05	9.61	0.01	2.324	3.07	0.38	5.8	94.2	0.0	-4.83	0.63	0.80	2.42	3.6	0.004	0.68	0.0	0.04	13.97	0.00	2.154	7.51	0.44	5.7	94.3	0.0	1.02	0.87	0.65	0.81	1.98	30474	3868	5	0	2	0	0	logfile
✔	6NE3	9356	2022-05-14	2018-12-16	3.9	3.77	—	3.7	0.008	0.95	0.0	0.05	28.16	0.01	2.287	6.32	0.48	6.9	93.1	0.0	-3.61	0.74	0.71	0.90	3.6	0.003	0.68	0.0	0.04	27.73	0.00	2.171	13.24	0.19	6.4	93.6	0.0	-0.32	0.55	0.80	0.81	0.67	16336	1245	11	312	1	0	0	logfile
✔	6KiU	9998	2022-05-16	2019-07-20	3.2	3.29	—	3.2	0.007	0.85	0.0	0.05	21.97	0.01	2.178	3.27	0.00	6.6	93.4	0.0	-3.67	0.72	0.78	2.19	3.2	0.004	0.63	0.0	0.04	23.45	0.00	2.113	8.48	0.13	3.7	96.3	0.0	-0.97	1.26	0.72	0.80	1.78	20503	1839	16	290	1	0	0	logfile
✔	6BCJ	7081	2022-05-16	2017-10-20	3.14	3.22	—	3.2	0.008	0.97	0.0	0.05	9.60	0.01	2.301	2.63	0.38	5.9	94.1	0.0	-4.83	0.68	0.84	3.10	3.2	0.010	0.86	2.0	0.04	14.14	0.00	2.258	7.67	0.25	4.8	95.2	0.0	1.25	0.74	0.69	0.82	2.06	29868	3744	9	0	4	8	0	logfile
✔	6KiX	0694	2022-05-15	2019-07-20	4.1	4.17	—	4.1	0.006	0.83	0.0	0.05	22.57	0.01	2.219	3.46	0.00	8.6	91.4	0.0	-3.74	0.71	0.73	—	4.1	0.003	0.61	0.0	0.04	22.95	0.00	2.169	10.59	0.07	5.8	94.2	0.0	-1.33	0.82	0.73	0.76	—	19900	1763	15	290	1	0	0	logfile
✔	6CVM	7770	2022-05-17	2018-03-28	1.9	2.49	1.94	2.3	0.012	0.92	0.0	0.07	10.17	0.01	2.053	3.98	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	2.3	0.005	0.63	0.0	0.05	13.84	0.00	1.973	6.97	0.69	2.2	97.8	0.0	0.70	0.37	0.85	0.94	6.94	37062	4084	12	0	20	4194	0	logfile
✔	6E0P	8949	2022-05-14	2018-07-06	2.6	2.80	2.51	2.7	0.007	0.85	0.0	0.05	25.48	0.01	2.253	2.30	0.00	4.8	95.2	0.0	-2.18	0.79	0.86	4.43	2.7	0.003	0.63	0.0	0.04	27.05	0.00	2.061	7.32	1.36	3.8	96.2	0.0	1.26	0.52	0.79	0.87	3.40	15567	1220	12	290	0	0	0	logfile
✔	5LKi	4068	2022-05-12	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.63	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.003	0.82	0.0	0.04	15.10	0.00	2.086	15.11	0.39	6.9	92.7	0.4	0.29	0.82	0.63	0.80	1.58	55415	7135	5	0	0	0	0	logfile
✔	6RQJ	4983	2022-05-13	2019-05-15	3.5	4.14	3.49	3.7	0.006	0.74	0.0	0.11	14.34	0.00	2.041	11.21	0.06	6.9	92.9	0.2	-4.28	0.84	0.75	2.30	3.8	0.003	0.64	0.0	0.04	15.37	0.00	2.181	11.01	0.24	5.3	94.7	0.0	-0.71	0.49	0.89	0.85	2.06	14971	1899	6	0	2	0	0	logfile
✔	3J9P	6267	2022-05-14	2015-02-14	4.24	2.59	—	4.1	0.009	1.84	4.0	0.07	17.68	0.01	2.113	26.59	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.003	1.08	0.0	0.04	13.94	0.00	2.147	16.50	0.00	8.3	91.0	0.7	-1.68	1.18	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✔	6C6T	7350	2022-05-15	2018-01-19	3.5	3.64	—	3.6	0.010	1.14	0.0	0.07	13.19	0.01	1.993	7.59	0.72	8.1	91.6	0.3	-4.12	0.74	0.81	2.49	3.6	0.003	0.66	0.0	0.04	16.42	0.00	2.029	10.97	0.40	5.6	94.3	0.1	-0.79	0.67	0.75	0.81	1.55	26915	3262	11	68	3	0	0	logfile
✔	6DFH	7876	2022-05-14	2018-05-14	3.85	4.50	3.81	3.9	0.009	0.96	0.0	0.06	9.90	0.01	2.252	7.17	0.28	9.8	90.2	0.0	-4.12	0.84	0.85	1.78	3.9	0.004	0.76	0.0	0.05	12.57	0.00	2.064	15.25	0.09	7.5	92.5	0.0	-1.82	2.18	0.84	0.86	2.13	20046	2406	18	0	90	0	0	logfile

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