Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VPS	21316	2021-12-01	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	3.89	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.88	6.47	2736	279	9	0	0	0	0	logfile
✔	6RE5	4842	2021-12-01	2019-04-12	3.2	3.28	—	3.3	0.010	0.94	0.0	0.06	14.48	0.01	2.163	5.75	0.27	4.8	95.0	0.2	-3.94	0.72	0.85	2.85	3.3	0.003	0.57	0.0	0.04	15.83	0.00	1.978	9.21	0.21	3.3	96.6	0.1	0.38	0.47	0.72	0.86	2.18	53720	7099	37	0	11	0	0	logfile
✔	6VU8	21388	2021-12-01	2020-02-14	4.14	4.31	4.17	4.2	0.006	1.03	0.0	0.05	16.37	0.01	2.262	7.78	0.00	9.9	90.1	0.0	-4.91	0.72	0.78	—	4.2	0.003	0.83	0.0	0.04	15.09	0.00	2.083	16.99	0.00	8.9	91.1	0.0	-2.04	1.31	0.73	0.78	—	5249	669	2	0	0	0	0	logfile
✔	6VU5	21387	2021-12-01	2020-02-14	3.5	3.59	3.38	3.5	0.006	0.96	0.0	0.06	15.54	0.01	2.230	8.37	0.00	9.0	91.0	0.0	-4.94	0.72	0.75	1.82	3.5	0.003	0.73	0.0	0.04	17.10	0.00	2.145	15.01	0.42	5.0	95.0	0.0	-2.32	0.55	0.71	0.73	1.09	4657	576	2	0	27	0	0	logfile
✔	6VQi	21351	2021-12-01	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.002	0.54	0.0	0.03	3.92	0.00	2.243	3.65	0.00	5.4	94.5	0.1	3.11	0.74	0.56	0.76	—	5278	1062	8	0	0	0	0	logfile
✔	5MS1	3562	2021-12-01	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.004	0.73	0.0	0.05	12.70	0.00	2.117	12.11	0.00	4.4	95.6	0.0	-0.65	1.54	0.47	0.85	—	4350	556	2	0	0	0	0	logfile
✔	6XQo	22291	2021-12-01	2020-07-09	3.1	3.54	—	3.5	0.004	0.57	0.0	0.04	15.61	0.00	1.956	9.56	3.52	4.4	95.6	0.0	-2.83	0.76	0.75	2.70	3.5	0.004	0.63	0.0	0.04	16.63	0.00	2.191	10.65	0.70	2.6	97.4	0.0	0.73	1.25	0.79	0.78	1.70	4301	560	4	0	4	0	0	logfile
✔	6WUT	21918	2021-12-01	2020-05-05	3.0	3.08	—	3.1	0.008	0.89	0.0	0.05	13.93	0.01	2.253	3.66	5.79	6.2	93.8	0.0	-4.07	0.70	0.82	3.81	3.1	0.003	0.61	0.0	0.04	15.65	0.00	2.147	5.85	3.19	3.9	96.1	0.0	-0.04	4.28	0.71	0.83	3.21	8218	1087	3	0	0	0	0	logfile
✔	6W5C	21541	2021-12-02	2020-03-13	2.9	2.92	—	3.2	0.004	0.64	0.0	0.04	16.12	0.00	2.103	8.53	0.85	7.4	92.4	0.2	-1.44	0.84	0.82	4.35	3.2	0.003	0.58	0.0	0.04	17.98	0.00	2.053	11.09	1.94	7.0	93.0	0.0	-0.10	1.16	0.83	0.82	3.53	10183	1023	5	105	0	0	0	logfile
✔	6REE	4851	2021-12-01	2019-04-12	3.1	3.13	—	3.2	0.006	0.86	0.0	0.05	14.14	0.01	2.220	5.17	0.14	4.4	95.5	0.1	-3.82	0.71	0.83	2.80	3.2	0.003	0.59	0.0	0.04	15.73	0.00	1.930	9.02	0.30	3.7	96.2	0.1	0.24	0.51	0.72	0.86	2.32	53756	7104	37	0	11	0	0	logfile
✔	6REB	4848	2021-12-01	2019-04-12	3.2	3.24	—	3.3	0.011	1.02	0.0	0.06	14.40	0.01	2.140	5.40	0.37	4.8	95.1	0.1	-3.95	0.70	0.84	3.18	3.3	0.008	0.77	1.0	0.04	15.69	0.00	1.711	11.19	0.09	3.7	96.2	0.1	-0.40	1.14	0.72	0.86	2.62	53756	7104	37	0	11	0	0	logfile
✔	6X4S	22042	2021-12-01	2020-05-22	3.5	3.84	—	3.9	0.007	0.77	0.0	0.05	15.59	0.00	2.077	11.03	0.97	1.9	98.1	0.0	1.34	0.72	0.75	1.39	3.9	0.003	0.71	0.0	0.04	17.87	0.00	2.114	11.97	1.17	1.8	98.2	0.0	4.20	1.53	0.72	0.76	1.05	5373	706	9	0	1	0	0	logfile
✔	6RD9	4810	2021-12-01	2019-04-12	3.0	3.00	—	3.1	0.014	1.11	0.0	0.07	14.22	0.01	1.876	6.05	0.69	4.7	95.0	0.2	-5.13	0.71	0.84	3.64	3.1	0.004	0.66	0.0	0.04	15.96	0.00	1.860	9.74	1.79	3.7	96.2	0.1	0.26	0.51	0.76	0.86	2.88	53776	7103	41	0	11	28	0	logfile
✔	6VRC	21367	2021-12-01	2020-02-07	3.2	3.32	—	3.3	0.010	1.27	2.0	0.08	15.90	0.01	2.170	11.58	3.70	7.7	92.3	0.0	-4.83	0.79	0.82	2.87	3.3	0.003	0.64	0.0	0.04	17.08	0.00	2.149	6.20	0.42	5.6	94.4	0.0	-0.67	0.89	0.80	0.85	2.09	9429	1007	2	51	0	0	0	logfile
✔	6GCS	4384	2021-12-01	2018-04-19	4.32	4.51	—	4.3	0.010	1.35	3.0	0.97	12.10	0.01	2.231	8.76	0.73	13.4	85.9	0.8	-4.79	0.77	0.78	—	4.3	0.009	1.70	0.0	0.30	12.69	0.00	2.081	20.50	0.00	13.3	86.4	0.3	-2.18	0.77	0.78	0.80	—	55137	6864	53	0	667	0	0	logfile
✔	6UWF	20922	2021-12-01	2019-11-05	3.08	3.26	—	3.3	0.008	1.07	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.002	0.56	0.0	0.04	15.13	0.00	2.263	7.03	0.31	3.1	96.9	0.0	1.21	1.11	0.67	0.85	2.41	3178	417	1	0	2	0	0	logfile
✔	6RET	4856	2021-12-01	2019-04-12	4.3	4.36	4.35	4.3	0.006	0.95	0.0	0.06	15.02	0.01	1.680	8.22	0.41	6.0	93.9	0.1	-5.14	0.59	0.72	—	4.3	0.006	0.81	2.0	0.04	14.32	0.00	1.405	18.61	0.02	4.8	95.1	0.1	-1.00	0.71	0.59	0.74	—	53756	7104	37	0	11	0	0	logfile
✔	7BZ2	30249	2021-12-01	2020-04-26	3.82	3.99	—	3.9	0.005	0.66	0.0	0.05	14.76	0.00	2.101	12.28	0.00	10.2	89.8	0.0	-6.04	0.73	0.79	2.10	3.9	0.016	1.60	2.0	0.05	16.98	0.00	1.601	12.63	0.41	4.9	94.9	0.1	-3.01	1.58	0.72	0.78	1.15	7393	978	5	0	1	0	0	logfile
✔	6XYE	10649	2021-12-01	2020-01-30	4.3	4.37	4.28	4.3	0.010	1.29	0.0	0.09	10.03	0.01	2.315	11.42	0.00	4.7	95.3	0.0	-3.09	0.71	0.69	—	4.3	0.003	0.72	0.0	0.05	12.27	0.00	2.190	12.27	0.00	6.6	93.4	0.0	-1.61	1.72	0.71	0.69	—	9834	1293	6	0	0	0	0	logfile
✔	6VJZ	21221	2021-12-01	2020-01-18	4.3	4.41	—	4.3	0.006	0.83	0.0	0.05	14.50	0.00	2.195	21.68	0.10	6.2	93.8	0.1	-3.21	0.64	0.79	—	4.3	0.003	0.72	0.0	0.04	14.89	0.00	2.201	13.78	0.00	4.8	95.2	0.0	1.46	1.66	0.62	0.77	—	8996	1093	4	0	0	0	0	logfile

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