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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6iFZ | 9659 | 2022-05-14 | 2018-09-21 | 3.58 | 3.57 | — | 3.5 | 0.008 | 1.15 | 2.0 | 0.07 | 16.35 | 0.01 | 1.258 | 12.63 | 0.96 | 10.7 | 88.8 | 0.5 | -5.16 | 0.72 | 0.80 | 2.37 | 3.5 | 0.005 | 0.88 | 0.0 | 0.04 | 17.56 | 0.00 | 1.532 | 15.97 | 0.21 | 8.4 | 91.5 | 0.1 | -2.23 | 1.66 | 0.72 | 0.79 | 2.02 | 19185 | 2254 | 11 | 62 | 1 | 0 | 0 | logfile |
✔ | 6HRF | 0260 | 2022-05-12 | 2018-09-26 | 3.3 | 3.38 | 2.95 | 3.5 | 0.016 | 1.25 | 0.0 | 0.09 | 13.68 | 0.01 | 2.627 | 8.66 | 0.00 | 13.3 | 86.7 | 0.0 | -4.08 | 0.38 | 0.74 | 2.93 | 3.5 | 0.005 | 0.84 | 0.0 | 0.05 | 16.58 | 0.00 | 2.181 | 9.08 | 0.25 | 6.7 | 93.3 | 0.0 | -3.41 | 3.72 | 0.37 | 0.78 | 3.35 | 3522 | 462 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oiS | 20080 | 2022-05-13 | 2019-04-09 | 3.6 | 3.71 | — | 3.6 | 0.009 | 1.05 | 0.0 | 0.06 | 10.80 | 0.01 | 2.315 | 5.76 | 0.68 | 4.2 | 95.8 | 0.0 | -2.46 | 0.78 | 0.81 | 3.12 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 14.60 | 0.00 | 2.118 | 8.97 | 0.34 | 2.6 | 97.4 | 0.0 | 1.37 | 2.26 | 0.79 | 0.83 | 2.68 | 10732 | 1365 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QS4 | 4621 | 2022-05-16 | 2019-02-20 | 4.2 | 7.28 | 4.28 | 6.5 | 0.009 | 1.07 | 0.0 | 0.06 | 10.54 | 0.01 | 2.235 | 8.01 | 0.10 | 8.4 | 91.6 | 0.0 | -3.77 | 0.83 | 0.65 | — | 6.5 | 0.003 | 0.67 | 0.0 | 0.04 | 11.93 | 0.00 | 2.098 | 20.68 | 0.03 | 5.6 | 94.4 | 0.0 | 0.14 | 1.67 | 0.90 | 0.84 | — | 28839 | 3622 | 13 | 0 | 11 | 0 | 0 | logfile |
✔ | 6oUA | 20200 | 2022-05-12 | 2019-05-04 | 4.18 | 4.32 | — | 4.3 | 0.008 | 1.37 | 1.0 | 0.07 | 13.97 | 0.01 | 2.294 | 7.13 | 2.35 | 17.4 | 82.3 | 0.3 | -5.89 | 0.72 | 0.79 | — | 4.3 | 0.003 | 0.84 | 0.0 | 0.05 | 14.52 | 0.00 | 2.107 | 11.12 | 0.00 | 13.2 | 86.8 | 0.0 | -1.96 | 1.15 | 0.72 | 0.77 | — | 5208 | 637 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC7 | 4382 | 2022-05-12 | 2018-04-17 | 4.3 | 4.85 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.03 | 13.13 | 0.00 | 2.251 | 5.14 | 0.28 | 5.9 | 93.9 | 0.1 | -4.27 | 0.76 | 0.61 | — | 4.4 | 0.003 | 0.60 | 0.0 | 0.03 | 15.02 | 0.00 | 1.979 | 22.87 | 0.07 | 8.8 | 91.1 | 0.1 | -1.90 | 1.64 | 0.91 | 0.86 | — | 54410 | 1738 | 17 | 1901 | 0 | 0 | 0 | logfile |
✔ | 6E1K | 8956 | 2022-05-13 | 2018-07-10 | 3.3 | 3.68 | 3.47 | 3.7 | 0.019 | 1.76 | 1.0 | 0.08 | 13.49 | 0.01 | 2.047 | 10.41 | 1.50 | 11.4 | 88.3 | 0.3 | -6.12 | 0.53 | 0.67 | 3.36 | 3.7 | 0.004 | 0.73 | 0.0 | 0.04 | 14.52 | 0.00 | 2.069 | 12.45 | 0.67 | 6.2 | 93.8 | 0.0 | -1.98 | 0.76 | 0.58 | 0.67 | 1.69 | 11641 | 1450 | 10 | 0 | 21 | 2 | 0 | logfile |
✔ | 6KiV | 9999 | 2022-05-16 | 2019-07-20 | 4.0 | 4.16 | — | 4.0 | 0.007 | 0.89 | 0.0 | 0.05 | 22.53 | 0.01 | 2.263 | 5.31 | 0.00 | 9.6 | 90.4 | 0.0 | -3.80 | 0.75 | 0.75 | — | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 24.16 | 0.00 | 2.058 | 13.11 | 0.19 | 6.4 | 93.6 | 0.0 | -1.62 | 0.86 | 0.77 | 0.78 | — | 20719 | 1865 | 16 | 290 | 1 | 0 | 0 | logfile |
✔ | 6BCL | 7082 | 2022-05-16 | 2017-10-20 | 3.54 | 3.64 | — | 3.6 | 0.008 | 0.96 | 0.0 | 0.05 | 9.61 | 0.01 | 2.324 | 3.07 | 0.38 | 5.8 | 94.2 | 0.0 | -4.83 | 0.63 | 0.80 | 2.42 | 3.6 | 0.004 | 0.68 | 0.0 | 0.04 | 13.97 | 0.00 | 2.154 | 7.51 | 0.44 | 5.7 | 94.3 | 0.0 | 1.02 | 0.87 | 0.65 | 0.81 | 1.98 | 30474 | 3868 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 6NE3 | 9356 | 2022-05-14 | 2018-12-16 | 3.9 | 3.77 | — | 3.7 | 0.008 | 0.95 | 0.0 | 0.05 | 28.16 | 0.01 | 2.287 | 6.32 | 0.48 | 6.9 | 93.1 | 0.0 | -3.61 | 0.74 | 0.71 | 0.90 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 27.73 | 0.00 | 2.171 | 13.24 | 0.19 | 6.4 | 93.6 | 0.0 | -0.32 | 0.55 | 0.80 | 0.81 | 0.67 | 16336 | 1245 | 11 | 312 | 1 | 0 | 0 | logfile |
✔ | 6KiU | 9998 | 2022-05-16 | 2019-07-20 | 3.2 | 3.29 | — | 3.2 | 0.007 | 0.85 | 0.0 | 0.05 | 21.97 | 0.01 | 2.178 | 3.27 | 0.00 | 6.6 | 93.4 | 0.0 | -3.67 | 0.72 | 0.78 | 2.19 | 3.2 | 0.004 | 0.63 | 0.0 | 0.04 | 23.45 | 0.00 | 2.113 | 8.48 | 0.13 | 3.7 | 96.3 | 0.0 | -0.97 | 1.26 | 0.72 | 0.80 | 1.78 | 20503 | 1839 | 16 | 290 | 1 | 0 | 0 | logfile |
✔ | 6BCJ | 7081 | 2022-05-16 | 2017-10-20 | 3.14 | 3.22 | — | 3.2 | 0.008 | 0.97 | 0.0 | 0.05 | 9.60 | 0.01 | 2.301 | 2.63 | 0.38 | 5.9 | 94.1 | 0.0 | -4.83 | 0.68 | 0.84 | 3.10 | 3.2 | 0.010 | 0.86 | 2.0 | 0.04 | 14.14 | 0.00 | 2.258 | 7.67 | 0.25 | 4.8 | 95.2 | 0.0 | 1.25 | 0.74 | 0.69 | 0.82 | 2.06 | 29868 | 3744 | 9 | 0 | 4 | 8 | 0 | logfile |
✔ | 6KiX | 0694 | 2022-05-15 | 2019-07-20 | 4.1 | 4.17 | — | 4.1 | 0.006 | 0.83 | 0.0 | 0.05 | 22.57 | 0.01 | 2.219 | 3.46 | 0.00 | 8.6 | 91.4 | 0.0 | -3.74 | 0.71 | 0.73 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 22.95 | 0.00 | 2.169 | 10.59 | 0.07 | 5.8 | 94.2 | 0.0 | -1.33 | 0.82 | 0.73 | 0.76 | — | 19900 | 1763 | 15 | 290 | 1 | 0 | 0 | logfile |
✔ | 6CVM | 7770 | 2022-05-17 | 2018-03-28 | 1.9 | 2.49 | 1.94 | 2.3 | 0.012 | 0.92 | 0.0 | 0.07 | 10.17 | 0.01 | 2.053 | 3.98 | 0.00 | 2.7 | 97.3 | 0.0 | -1.16 | 0.81 | 0.91 | 7.66 | 2.3 | 0.005 | 0.63 | 0.0 | 0.05 | 13.84 | 0.00 | 1.973 | 6.97 | 0.69 | 2.2 | 97.8 | 0.0 | 0.70 | 0.37 | 0.85 | 0.94 | 6.94 | 37062 | 4084 | 12 | 0 | 20 | 4194 | 0 | logfile |
✔ | 6E0P | 8949 | 2022-05-14 | 2018-07-06 | 2.6 | 2.80 | 2.51 | 2.7 | 0.007 | 0.85 | 0.0 | 0.05 | 25.48 | 0.01 | 2.253 | 2.30 | 0.00 | 4.8 | 95.2 | 0.0 | -2.18 | 0.79 | 0.86 | 4.43 | 2.7 | 0.003 | 0.63 | 0.0 | 0.04 | 27.05 | 0.00 | 2.061 | 7.32 | 1.36 | 3.8 | 96.2 | 0.0 | 1.26 | 0.52 | 0.79 | 0.87 | 3.40 | 15567 | 1220 | 12 | 290 | 0 | 0 | 0 | logfile |
✔ | 5LKi | 4068 | 2022-05-12 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 39.63 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.003 | 0.82 | 0.0 | 0.04 | 15.10 | 0.00 | 2.086 | 15.11 | 0.39 | 6.9 | 92.7 | 0.4 | 0.29 | 0.82 | 0.63 | 0.80 | 1.58 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RQJ | 4983 | 2022-05-13 | 2019-05-15 | 3.5 | 4.14 | 3.49 | 3.7 | 0.006 | 0.74 | 0.0 | 0.11 | 14.34 | 0.00 | 2.041 | 11.21 | 0.06 | 6.9 | 92.9 | 0.2 | -4.28 | 0.84 | 0.75 | 2.30 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 15.37 | 0.00 | 2.181 | 11.01 | 0.24 | 5.3 | 94.7 | 0.0 | -0.71 | 0.49 | 0.89 | 0.85 | 2.06 | 14971 | 1899 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 3J9P | 6267 | 2022-05-14 | 2015-02-14 | 4.24 | 2.59 | — | 4.1 | 0.009 | 1.84 | 4.0 | 0.07 | 17.68 | 0.01 | 2.113 | 26.59 | 4.64 | 10.2 | 88.2 | 1.6 | -3.58 | 0.73 | 0.78 | — | 4.2 | 0.003 | 1.08 | 0.0 | 0.04 | 13.94 | 0.00 | 2.147 | 16.50 | 0.00 | 8.3 | 91.0 | 0.7 | -1.68 | 1.18 | 0.73 | 0.80 | — | 16952 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6C6T | 7350 | 2022-05-15 | 2018-01-19 | 3.5 | 3.64 | — | 3.6 | 0.010 | 1.14 | 0.0 | 0.07 | 13.19 | 0.01 | 1.993 | 7.59 | 0.72 | 8.1 | 91.6 | 0.3 | -4.12 | 0.74 | 0.81 | 2.49 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 16.42 | 0.00 | 2.029 | 10.97 | 0.40 | 5.6 | 94.3 | 0.1 | -0.79 | 0.67 | 0.75 | 0.81 | 1.55 | 26915 | 3262 | 11 | 68 | 3 | 0 | 0 | logfile |
✔ | 6DFH | 7876 | 2022-05-14 | 2018-05-14 | 3.85 | 4.50 | 3.81 | 3.9 | 0.009 | 0.96 | 0.0 | 0.06 | 9.90 | 0.01 | 2.252 | 7.17 | 0.28 | 9.8 | 90.2 | 0.0 | -4.12 | 0.84 | 0.85 | 1.78 | 3.9 | 0.004 | 0.76 | 0.0 | 0.05 | 12.57 | 0.00 | 2.064 | 15.25 | 0.09 | 7.5 | 92.5 | 0.0 | -1.82 | 2.18 | 0.84 | 0.86 | 2.13 | 20046 | 2406 | 18 | 0 | 90 | 0 | 0 | logfile |