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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8UHF | 42279 | 2024-03-15 | 2023-10-09 | 3.8 | 3.77 | — | 1.7 | 0.002 | 0.49 | 0.0 | 0.04 | 12.21 | 0.00 | 2.126 | 10.07 | 0.00 | 3.0 | 97.0 | 0.0 | -1.49 | 0.62 | 0.79 | 0.57 | 1.6 | 0.003 | 0.78 | 0.0 | 0.04 | 15.72 | 0.00 | 2.146 | 18.48 | 2.99 | 3.7 | 96.3 | 0.0 | 0.18 | 0.89 | 0.63 | 0.80 | 0.04 | 12411 | 1739 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ooi | 17016 | 2024-03-23 | 2023-04-05 | 2.61 | 2.14 | — | 1.7 | 0.005 | 0.70 | 0.0 | 0.05 | 15.39 | 0.00 | 1.501 | 10.42 | 0.16 | 4.5 | 95.1 | 0.4 | -0.61 | 0.83 | 0.80 | 3.03 | 1.6 | 0.003 | 0.65 | 0.0 | 0.04 | 16.82 | 0.00 | 2.048 | 10.90 | 2.21 | 6.0 | 93.7 | 0.3 | -0.10 | 0.92 | 0.84 | 0.83 | 2.88 | 35256 | 4404 | 18 | 0 | 36 | 144 | 0 | logfile |
✔ | 8JX7 | 36691 | 2024-03-15 | 2023-06-30 | 3.6 | 4.97 | 3.68 | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 17.21 | 0.00 | 2.057 | 8.94 | 0.00 | 2.3 | 97.7 | 0.0 | 0.20 | 0.63 | 0.77 | 0.93 | 4.2 | 0.003 | 0.92 | 0.0 | 0.05 | 16.84 | 0.00 | 2.140 | 16.51 | 2.07 | 2.1 | 97.9 | 0.0 | 0.39 | 1.71 | 0.63 | 0.84 | 0.90 | 11237 | 1416 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TJ3 | 41299 | 2024-03-15 | 2023-07-20 | 3.2 | 3.62 | — | 3.4 | 0.004 | 0.72 | 0.0 | 0.04 | 13.85 | 0.02 | 2.416 | 10.13 | 1.16 | 7.4 | 92.4 | 0.1 | 0.15 | 0.73 | 0.58 | 0.54 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 15.45 | 0.00 | 1.972 | 16.38 | 0.72 | 7.6 | 92.4 | 0.0 | 0.56 | 1.87 | 0.79 | 0.76 | 1.68 | 13127 | 833 | 2 | 0 | 0 | 0 | 6652 | logfile |
✔ | 8GN7 | 34156 | 2024-03-17 | 2022-08-23 | 3.0 | 3.00 | 2.79 | 3.0 | 0.003 | 0.70 | 0.0 | 0.04 | 18.24 | 0.01 | 2.001 | 2.57 | 8.33 | 2.7 | 97.3 | 0.0 | -1.11 | 0.65 | 0.83 | 1.32 | 3.0 | 0.002 | 0.59 | 0.0 | 0.04 | 16.33 | 0.00 | 2.253 | 2.41 | 3.62 | 2.7 | 97.3 | 0.0 | 1.08 | 1.03 | 0.76 | 0.89 | 1.15 | 17530 | 2030 | 20 | 0 | 50 | 0 | 0 | logfile |
✔ | 8BWo | 16292 | 2024-03-14 | 2022-12-07 | 3.2 | 3.36 | 3.15 | 3.4 | 0.005 | 1.11 | 0.0 | 0.05 | 13.92 | 0.01 | 1.900 | 2.44 | 0.47 | 4.2 | 95.8 | 0.0 | -1.54 | 0.58 | 0.79 | 3.27 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 16.16 | 0.00 | 1.859 | 8.05 | 1.42 | 2.3 | 97.7 | 0.0 | -0.25 | 1.79 | 0.69 | 0.86 | 2.68 | 9712 | 1211 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 8GHD | 40041 | 2024-03-22 | 2023-03-09 | 2.2 | 2.57 | — | 2.5 | 0.007 | 1.07 | 0.0 | 0.05 | 14.42 | 0.01 | 2.189 | 4.90 | 0.00 | 2.1 | 97.9 | 0.0 | 0.43 | 0.78 | 0.90 | 5.27 | 2.4 | 0.003 | 0.54 | 0.0 | 0.04 | 16.43 | 0.00 | 2.191 | 9.31 | 1.23 | 1.7 | 98.3 | 0.0 | 1.42 | 0.94 | 0.77 | 0.91 | 5.16 | 32220 | 3972 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 8F0K | 28759 | 2024-03-15 | 2022-11-03 | 1.9 | 1.70 | 1.92 | 1.9 | 0.004 | 0.59 | 0.0 | 0.04 | 14.28 | 0.01 | 2.252 | 4.34 | 0.91 | 1.2 | 98.8 | 0.0 | -1.70 | 0.50 | 0.67 | 4.75 | 1.9 | 0.003 | 0.59 | 0.0 | 0.04 | 16.18 | 0.00 | 2.197 | 5.48 | 1.55 | 1.9 | 98.1 | 0.0 | 1.66 | 0.58 | 0.57 | 0.73 | 5.02 | 10553 | 1272 | 12 | 0 | 18 | 39 | 0 | logfile |
✔ | 8B11 | 15799 | 2024-03-03 | 2022-09-08 | 2.52 | 2.32 | 2.54 | 2.3 | 0.005 | 0.71 | 0.0 | 0.05 | 17.25 | 0.00 | 0.439 | 16.54 | 1.18 | 1.4 | 98.6 | 0.0 | -0.06 | 0.68 | 0.88 | 4.07 | 2.3 | 0.004 | 0.64 | 0.0 | 0.04 | 18.08 | 0.00 | 2.107 | 9.34 | 4.63 | 1.0 | 99.0 | 0.0 | 0.16 | 2.80 | 0.67 | 0.88 | 4.42 | 157440 | 21600 | 480 | 0 | 0 | 2700 | 0 | logfile |
✔ | 8SGW | 40470 | 2024-03-15 | 2023-04-13 | 2.5 | 2.88 | 2.51 | 2.8 | 0.004 | 0.69 | 0.0 | 0.24 | 21.89 | 0.01 | 1.492 | 13.07 | 0.00 | 5.0 | 95.0 | 0.0 | 0.83 | 0.64 | 0.77 | 3.15 | 2.8 | 0.004 | 0.67 | 0.0 | 0.04 | 15.79 | 0.00 | 2.160 | 11.92 | 2.10 | 5.6 | 94.4 | 0.0 | 0.96 | 2.15 | 0.61 | 0.78 | 3.15 | 10414 | 1226 | 4 | 0 | 38 | 0 | 0 | logfile |
✔ | 8UW3 | 42637 | 2024-03-15 | 2023-11-06 | 3.2 | 3.11 | 3.18 | 3.2 | 0.006 | 0.64 | 0.0 | 0.04 | 17.22 | 0.00 | 1.850 | 8.61 | 2.51 | 5.4 | 94.5 | 0.1 | 0.74 | 0.79 | 0.79 | 2.52 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 18.61 | 0.00 | 2.158 | 13.32 | 2.59 | 5.3 | 94.6 | 0.1 | 0.82 | 0.99 | 0.82 | 0.84 | 2.34 | 12005 | 1265 | 4 | 73 | 1 | 0 | 0 | logfile |
✔ | 8JKZ | 36384 | 2024-03-11 | 2023-06-02 | 3.6 | 3.43 | 3.51 | 3.4 | 0.007 | 0.74 | 0.0 | 0.04 | 17.97 | 0.00 | 2.219 | 10.00 | 1.00 | 10.0 | 89.9 | 0.1 | -1.21 | 0.72 | 0.84 | 2.29 | 3.4 | 0.002 | 0.58 | 0.0 | 0.04 | 17.97 | 0.00 | 2.212 | 8.45 | 2.54 | 9.4 | 90.5 | 0.1 | -0.72 | 1.26 | 0.75 | 0.84 | 1.78 | 8444 | 1053 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7TCN | 25814 | 2024-03-19 | 2021-12-27 | 4.1 | 4.79 | — | 4.1 | 0.005 | 0.84 | 0.0 | 0.05 | 15.30 | 0.01 | 2.037 | 4.00 | 0.12 | 6.1 | 93.9 | 0.0 | -1.35 | 0.84 | 0.79 | — | 4.1 | 0.005 | 0.74 | 0.0 | 0.05 | 13.24 | 0.00 | 2.060 | 12.46 | 0.00 | 7.8 | 92.2 | 0.0 | -1.70 | 1.28 | 0.86 | 0.85 | — | 23747 | 2961 | 29 | 0 | 50 | 0 | 0 | logfile |
✔ | 8G13 | 29660 | 2024-03-14 | 2023-02-01 | 2.3 | 3.09 | 2.30 | 2.7 | 0.004 | 0.60 | 0.0 | 0.05 | 14.97 | 0.00 | 2.083 | 5.94 | 0.86 | 3.9 | 96.1 | 0.0 | 0.94 | 0.88 | 0.92 | 3.62 | 2.7 | 0.003 | 0.48 | 0.0 | 0.04 | 15.53 | 0.00 | 2.130 | 7.66 | 0.76 | 4.1 | 95.9 | 0.0 | 0.85 | 0.25 | 0.88 | 0.93 | 4.70 | 10008 | 1336 | 4 | 0 | 0 | 0 | 12 | logfile |
✔ | 8TKD | 41347 | 2024-03-21 | 2023-07-25 | 3.7 | 2.74 | — | 3.7 | 0.002 | 0.47 | 0.0 | 0.03 | 16.64 | 0.00 | 2.042 | 6.60 | 0.26 | 1.8 | 98.2 | 0.0 | 2.98 | 0.70 | 0.74 | 1.30 | 3.7 | 0.003 | 0.52 | 0.0 | 0.03 | 16.25 | 0.00 | 1.996 | 8.83 | 1.30 | 2.1 | 97.8 | 0.0 | 2.84 | 0.60 | 0.71 | 0.75 | 1.62 | 144368 | 8996 | 8 | 0 | 12 | 0 | 72052 | logfile |
✔ | 8EV9 | 28623 | 2024-03-16 | 2022-10-20 | 3.33 | 3.59 | 3.37 | 3.6 | 0.015 | 1.18 | 0.0 | 0.10 | 15.89 | 0.01 | 2.017 | 7.98 | 0.44 | 4.0 | 96.0 | 0.0 | -4.23 | 0.64 | 0.82 | 2.07 | 3.6 | 0.002 | 0.51 | 0.0 | 0.04 | 16.50 | 0.00 | 2.182 | 8.05 | 1.94 | 2.6 | 97.4 | 0.0 | 1.24 | 0.92 | 0.63 | 0.77 | 1.80 | 14661 | 1778 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 8H4U | 34484 | 2024-03-11 | 2022-10-11 | 3.5 | 3.38 | 3.50 | 3.4 | 0.002 | 0.59 | 0.0 | 0.04 | 18.36 | 0.00 | 2.218 | 8.59 | 1.28 | 5.1 | 94.9 | 0.0 | 0.05 | 0.75 | 0.82 | 1.33 | 3.4 | 0.004 | 0.60 | 0.0 | 0.04 | 18.54 | 0.00 | 2.240 | 9.22 | 2.45 | 6.0 | 94.0 | 0.0 | 1.82 | 1.01 | 0.74 | 0.82 | 0.82 | 7944 | 959 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EVA | 28624 | 2024-03-16 | 2022-10-20 | 3.33 | 3.59 | 3.38 | 3.6 | 0.013 | 1.04 | 0.0 | 0.10 | 16.23 | 0.01 | 2.234 | 8.06 | 0.82 | 3.3 | 96.7 | 0.0 | -3.78 | 0.65 | 0.80 | 1.99 | 3.6 | 0.002 | 0.53 | 0.0 | 0.04 | 16.76 | 0.00 | 2.205 | 7.82 | 2.26 | 2.5 | 97.5 | 0.0 | 1.42 | 0.95 | 0.63 | 0.79 | 1.92 | 14591 | 1768 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 8JiQ | 36324 | 2024-03-11 | 2023-05-27 | 3.4 | 3.86 | 3.37 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 15.17 | 0.00 | 2.202 | 10.10 | 2.47 | 4.1 | 95.5 | 0.4 | -0.03 | 0.82 | 0.80 | 2.08 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 16.03 | 0.00 | 2.116 | 10.69 | 1.46 | 3.5 | 96.5 | 0.0 | 0.56 | 0.41 | 0.82 | 0.83 | 1.72 | 8707 | 1134 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YoX | 33989 | 2024-03-16 | 2022-08-02 | 3.95 | 4.33 | 4.09 | 4.1 | 0.006 | 1.31 | 8.0 | 0.10 | 27.06 | 0.01 | 0.786 | 33.58 | 46.70 | 1.0 | 98.8 | 0.2 | 2.84 | 0.82 | 0.70 | 0.48 | 4.1 | 0.005 | 0.98 | 1.0 | 0.05 | 19.34 | 0.00 | 1.843 | 28.27 | 7.91 | 3.3 | 96.7 | 0.0 | 0.08 | 1.36 | 0.85 | 0.78 | 0.49 | 13878 | 1749 | 6 | 0 | 0 | 0 | 0 | logfile |