Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WXi	32880	2022-12-11	2022-02-14	4.2	4.31	4.10	4.2	0.008	0.87	2.0	0.05	15.47	0.00	2.148	25.03	0.58	18.2	81.8	0.0	-4.77	0.78	0.81	—	4.2	0.003	0.73	2.0	0.04	13.77	0.00	2.176	13.51	0.00	7.8	92.2	0.0	-1.01	1.26	0.77	0.79	—	6522	862	4	0	0	0	0	logfile
✔	7STJ	25430	2022-12-13	2021-11-14	4.4	5.47	—	3.9	0.005	0.72	0.0	0.04	13.42	0.00	2.047	36.70	0.33	10.0	89.9	0.1	-1.96	0.88	0.84	—	3.9	0.004	0.64	0.0	0.04	13.49	0.00	2.127	27.69	0.00	9.3	90.7	0.0	-1.91	1.13	0.89	0.84	—	13515	1672	4	0	0	0	0	logfile
✔	7STi	25429	2022-12-13	2021-11-13	4.9	6.34	—	4.3	0.004	0.67	0.0	0.04	13.50	0.00	2.001	25.90	0.20	7.8	92.0	0.2	-1.35	0.89	0.83	—	4.3	0.003	0.65	0.0	0.05	13.46	0.00	2.134	22.71	0.00	8.5	91.3	0.2	-1.38	1.62	0.89	0.83	—	13531	1678	3	0	0	0	0	logfile
✔	7WX3	32875	2022-12-12	2022-02-14	3.1	3.61	3.03	3.5	0.011	0.91	4.0	0.05	16.74	0.00	2.150	6.65	3.70	4.6	95.4	0.0	-3.51	0.57	0.78	1.78	3.5	0.005	0.66	4.0	0.04	16.89	0.00	2.062	6.71	0.22	2.7	97.3	0.0	-0.45	1.17	0.57	0.78	0.88	8472	1086	12	0	8	0	0	logfile
✔	7WX4	32876	2022-12-11	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.003	0.55	0.0	0.04	17.53	0.00	2.137	5.71	0.00	4.8	95.2	0.0	-0.17	0.47	0.40	0.80	0.60	1992	260	2	0	0	0	0	logfile
✔	7WXF	32877	2022-12-11	2022-02-14	3.6	3.96	3.68	4.0	0.007	0.79	0.0	0.05	15.05	0.00	2.123	13.55	0.29	12.6	87.1	0.2	-4.85	0.72	0.79	1.44	3.9	0.005	0.82	0.0	0.05	16.05	0.00	2.118	13.24	0.58	7.8	92.2	0.0	-1.54	0.55	0.72	0.77	1.35	6494	860	2	0	0	0	0	logfile
✔	7WXG	32878	2022-12-11	2022-02-14	4.2	4.21	3.56	4.2	0.012	1.07	0.0	0.05	14.22	0.00	2.184	12.87	0.29	10.7	89.3	0.0	-5.16	0.51	0.80	—	4.2	0.003	0.68	0.0	0.04	14.12	0.00	2.328	8.78	0.00	6.5	93.5	0.0	-0.57	1.28	0.51	0.78	—	3295	430	1	0	1	0	0	logfile
✔	7WXH	32879	2022-12-11	2022-02-14	4.3	4.50	3.92	4.3	0.006	0.86	0.0	0.04	14.12	0.00	2.067	26.18	1.74	11.4	88.3	0.2	-4.55	0.79	0.82	—	4.3	0.003	0.77	0.0	0.04	13.20	0.00	2.163	15.77	0.00	6.9	93.1	0.0	-1.33	1.31	0.77	0.80	—	6494	860	2	0	0	0	0	logfile
✔	7MXD	24071	2022-12-16	2021-05-19	3.4	3.54	3.38	3.5	0.004	0.58	1.0	0.05	14.06	0.00	2.107	7.86	0.00	5.9	94.1	0.0	-1.62	0.80	0.80	2.29	3.5	0.004	0.57	0.0	0.04	15.46	0.00	2.126	8.31	0.42	6.3	93.7	0.0	-1.05	0.32	0.83	0.85	2.10	29496	3519	58	0	146	0	0	logfile
✔	7TY0	26163	2022-12-12	2022-02-10	3.5	3.62	3.44	3.6	0.013	1.48	1.0	0.10	8.96	0.01	2.417	1.08	0.39	2.1	97.7	0.1	0.78	0.70	0.73	3.93	3.6	0.005	0.68	0.0	0.05	12.65	0.00	2.010	7.74	1.16	4.3	95.7	0.0	0.20	0.60	0.72	0.77	3.91	10640	1522	18	0	24	0	0	logfile
✔	7TXZ	26162	2022-12-12	2022-02-10	3.2	3.25	3.11	3.2	0.016	1.48	0.0	0.09	10.07	0.01	2.400	0.55	0.19	1.9	98.0	0.1	0.71	0.71	0.79	4.26	3.2	0.002	0.60	0.0	0.05	13.50	0.00	2.120	7.62	0.09	3.0	96.9	0.1	0.29	0.53	0.72	0.83	3.71	11303	1464	22	0	29	0	0	logfile
✔	7QER	13938	2022-12-14	2021-12-03	2.2	2.66	2.18	2.3	0.011	0.71	0.0	0.05	14.00	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.003	0.57	0.0	0.04	14.90	0.00	2.228	2.27	2.00	1.0	99.0	0.0	3.45	1.24	0.84	0.89	3.51	19097	2244	36	0	60	305	0	logfile
✔	7T6B	25712	2022-12-12	2021-12-13	3.19	3.45	—	3.5	0.005	0.80	0.0	0.05	14.39	0.01	2.195	6.80	0.21	4.0	96.0	0.0	-3.82	0.62	0.82	3.31	3.5	0.002	0.57	0.0	0.04	15.71	0.00	2.097	8.40	0.31	2.9	97.1	0.0	-0.57	0.51	0.55	0.80	2.19	8755	1119	5	0	1	0	0	logfile
✔	7VBH	31879	2022-12-12	2021-08-31	3.0	3.20	—	3.2	0.010	1.12	1.0	0.06	15.86	0.01	1.784	12.55	0.52	4.7	95.3	0.0	-4.06	0.61	0.66	1.58	3.2	0.003	0.66	0.0	0.04	17.48	0.00	2.107	9.44	2.68	4.5	95.5	0.0	0.17	1.82	0.69	0.82	2.20	9116	1141	7	0	1	0	0	logfile
✔	7TYX	26197	2022-12-12	2022-02-14	2.55	3.24	2.69	3.2	0.004	0.51	0.0	0.04	13.21	0.00	2.231	4.55	1.62	1.8	98.2	0.0	-3.16	0.59	0.75	3.60	3.2	0.003	0.58	0.0	0.04	15.57	0.00	2.087	7.53	1.81	1.4	98.6	0.0	0.40	0.64	0.46	0.67	3.51	10219	1269	8	0	14	0	0	logfile
✔	7TYi	26180	2022-12-12	2022-02-13	3.3	3.44	3.19	3.5	0.004	0.56	0.0	0.04	12.86	0.00	2.217	6.71	1.50	1.6	98.4	0.0	-2.88	0.66	0.77	2.71	3.5	0.003	0.55	0.0	0.04	14.86	0.00	2.084	7.94	0.10	2.9	97.1	0.0	0.24	0.52	0.64	0.83	2.51	9413	1154	6	0	13	0	0	logfile
✔	7RW9	24711	2022-12-12	2021-08-19	3.9	4.54	3.87	4.2	0.003	0.63	0.0	0.04	13.18	0.00	2.140	7.88	0.11	6.4	93.3	0.3	0.44	0.78	0.69	1.28	4.2	0.003	0.64	0.0	0.04	14.75	0.00	2.150	9.12	0.32	5.0	94.7	0.3	1.48	0.53	0.88	0.83	0.81	10365	1456	4	0	0	0	0	logfile
✔	7SiP	25147	2022-12-11	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	16.74	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.48	0.0	0.04	15.60	0.00	2.203	3.43	1.74	0.7	99.3	0.0	1.27	0.99	0.59	0.83	2.64	7560	892	12	0	36	20	0	logfile
✔	7RW8	24710	2022-12-12	2021-08-19	3.5	4.25	3.47	3.8	0.004	0.58	0.0	0.04	13.41	0.00	2.069	5.77	0.00	3.5	96.5	0.0	0.99	0.80	0.72	2.46	3.8	0.003	0.54	0.0	0.04	14.47	0.00	2.106	5.93	0.08	3.2	96.8	0.0	2.18	0.98	0.89	0.85	1.80	12572	1712	4	0	0	0	0	logfile
✔	7S05	24784	2022-12-11	2021-08-30	3.1	3.37	3.11	3.4	0.003	0.64	0.0	0.05	14.90	0.00	2.212	8.58	0.00	5.8	94.2	0.0	0.10	0.68	0.81	2.22	3.4	0.003	0.56	0.0	0.05	16.47	0.00	2.294	7.98	0.36	5.9	94.1	0.0	1.21	0.49	0.68	0.84	2.52	7504	874	8	0	16	0	0	logfile

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