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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oRo | 20176 | 2024-03-18 | 2019-04-30 | 3.9 | 4.21 | 3.87 | 4.2 | 0.009 | 1.32 | 3.0 | 0.09 | 16.52 | 0.01 | 2.048 | 4.78 | 2.93 | 13.1 | 86.4 | 0.6 | -5.30 | 0.62 | 0.84 | 2.16 | 4.2 | 0.003 | 0.79 | 0.0 | 0.05 | 14.84 | 0.00 | 2.068 | 7.56 | 4.17 | 11.8 | 88.0 | 0.2 | -3.35 | 0.61 | 0.61 | 0.84 | 1.87 | 20085 | 2415 | 45 | 0 | 96 | 0 | 0 | logfile |
✔ | 7WVV | 32859 | 2024-03-11 | 2022-02-11 | 2.9 | 3.01 | — | 3.1 | 0.002 | 0.45 | 0.0 | 0.04 | 12.21 | 0.00 | 2.286 | 7.42 | 0.00 | 2.2 | 97.8 | 0.0 | 0.74 | 0.59 | 0.74 | 2.55 | 3.0 | 0.003 | 0.55 | 0.0 | 0.04 | 15.14 | 0.00 | 2.135 | 10.13 | 2.70 | 2.8 | 97.2 | 0.0 | 0.44 | 0.43 | 0.61 | 0.79 | 2.65 | 7020 | 911 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W0A | 32236 | 2024-03-20 | 2021-11-18 | 3.12 | 3.32 | — | 3.3 | 0.004 | 0.53 | 0.0 | 0.04 | 15.86 | 0.00 | 2.186 | 7.03 | 0.00 | 3.0 | 97.0 | 0.0 | 0.62 | 0.74 | 0.81 | 2.98 | 3.3 | 0.003 | 0.50 | 0.0 | 0.04 | 16.89 | 0.00 | 2.164 | 6.31 | 1.04 | 3.0 | 97.0 | 0.0 | 0.82 | 0.44 | 0.78 | 0.86 | 2.52 | 26898 | 2988 | 8 | 126 | 0 | 0 | 0 | logfile |
✔ | 6XL6 | 22235 | 2024-03-10 | 2020-06-28 | 3.0 | 3.41 | — | 3.3 | 0.005 | 0.68 | 0.0 | 0.05 | 19.90 | 0.00 | 2.257 | 5.23 | 0.00 | 0.0 | 100.0 | 0.0 | -1.93 | 0.76 | 0.83 | 2.94 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 20.53 | 0.00 | 2.252 | 6.76 | 2.04 | 1.9 | 98.1 | 0.0 | 0.26 | 1.38 | 0.75 | 0.83 | 2.60 | 5456 | 536 | 6 | 46 | 4 | 0 | 0 | logfile |
✔ | 7XK2 | 33241 | 2024-03-11 | 2022-04-19 | 3.1 | 3.31 | 3.13 | 3.3 | 0.005 | 1.02 | 0.0 | 0.06 | 16.48 | 0.01 | 2.251 | 6.29 | 0.32 | 6.7 | 93.3 | 0.0 | -2.41 | 0.64 | 0.76 | 2.08 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 17.01 | 0.00 | 2.106 | 13.03 | 3.85 | 6.1 | 93.9 | 0.0 | -0.92 | 0.34 | 0.67 | 0.81 | 1.94 | 8791 | 1128 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6UW9 | 20920 | 2024-03-17 | 2019-11-04 | 4.33 | 4.42 | — | 4.3 | 0.005 | 1.14 | 0.0 | 0.06 | 15.43 | 0.01 | 1.932 | 8.33 | 0.20 | 7.3 | 92.7 | 0.0 | -4.94 | 0.67 | 0.79 | — | 4.3 | 0.003 | 0.73 | 0.0 | 0.04 | 14.90 | 0.00 | 2.106 | 9.96 | 0.00 | 6.8 | 93.2 | 0.0 | -0.40 | 0.73 | 0.67 | 0.79 | — | 18924 | 2328 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E3i | 27866 | 2024-03-16 | 2022-08-17 | 2.53 | 2.76 | 2.58 | 2.8 | 0.004 | 0.62 | 0.0 | 0.04 | 13.35 | 0.00 | 2.215 | 8.98 | 0.07 | 5.3 | 94.6 | 0.1 | -0.36 | 0.73 | 0.88 | 4.95 | 2.8 | 0.003 | 0.60 | 0.0 | 0.04 | 15.90 | 0.00 | 2.180 | 8.04 | 1.85 | 5.5 | 94.3 | 0.1 | -0.43 | 0.36 | 0.74 | 0.89 | 4.68 | 13431 | 1671 | 5 | 7 | 3 | 0 | 0 | logfile |
✔ | 7RHX | 24470 | 2024-03-19 | 2021-07-19 | 3.23 | 3.49 | 3.31 | 3.4 | 0.004 | 0.79 | 0.0 | 0.05 | 20.66 | 0.01 | 2.289 | 1.05 | 0.00 | 2.0 | 98.0 | 0.0 | -0.38 | 0.75 | 0.84 | 2.43 | 3.4 | 0.004 | 0.61 | 0.0 | 0.04 | 21.90 | 0.00 | 2.161 | 3.03 | 0.84 | 3.3 | 96.7 | 0.0 | 1.27 | 1.07 | 0.76 | 0.87 | 1.64 | 25787 | 1288 | 8 | 168 | 0 | 0 | 12159 | logfile |
✔ | 7TAo | 25779 | 2024-03-18 | 2021-12-21 | 3.2 | 3.44 | — | 3.5 | 0.011 | 2.56 | 0.0 | 0.25 | 18.06 | 0.00 | 2.109 | 9.87 | 0.00 | 1.7 | 98.3 | 0.0 | 1.97 | 0.67 | 0.81 | 2.29 | 3.5 | 0.003 | 0.98 | 0.0 | 0.04 | 18.41 | 0.00 | 2.109 | 9.61 | 1.67 | 2.2 | 97.8 | 0.0 | 0.52 | 1.25 | 0.65 | 0.82 | 2.05 | 22497 | 2915 | 23 | 0 | 9 | 0 | 0 | logfile |
✔ | 7SP7 | 25367 | 2024-03-11 | 2021-11-02 | 3.1 | 3.61 | — | 3.5 | 0.008 | 0.68 | 0.0 | 0.05 | 14.83 | 0.00 | 2.219 | 3.57 | 0.00 | 1.4 | 98.6 | 0.0 | 2.52 | 0.60 | 0.73 | 1.83 | 3.5 | 0.003 | 0.52 | 0.0 | 0.04 | 15.76 | 0.00 | 2.210 | 5.65 | 2.38 | 2.3 | 97.7 | 0.0 | 1.57 | 0.59 | 0.66 | 0.81 | 3.12 | 6052 | 739 | 4 | 1 | 4 | 0 | 0 | logfile |
✔ | 7WF7 | 32461 | 2024-03-11 | 2021-12-26 | 3.4 | 3.19 | — | 3.2 | 0.004 | 0.83 | 0.0 | 0.05 | 13.78 | 0.00 | 2.288 | 2.88 | 0.00 | 4.4 | 95.6 | 0.0 | -1.14 | 0.55 | 0.64 | 1.44 | 3.3 | 0.004 | 0.70 | 0.0 | 0.04 | 15.62 | 0.00 | 2.123 | 10.43 | 3.26 | 5.7 | 94.3 | 0.0 | -0.03 | 0.56 | 0.56 | 0.62 | 1.75 | 8136 | 1034 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7URG | 26712 | 2024-03-11 | 2022-04-21 | 3.46 | 3.69 | 3.49 | 3.7 | 0.002 | 0.50 | 0.0 | 0.04 | 15.44 | 0.00 | 2.229 | 4.69 | 0.00 | 3.5 | 96.5 | 0.0 | 0.73 | 0.69 | 0.75 | 2.59 | 3.7 | 0.003 | 0.57 | 0.0 | 0.04 | 16.94 | 0.00 | 2.222 | 5.74 | 3.47 | 4.8 | 95.2 | 0.0 | 0.12 | 0.52 | 0.75 | 0.79 | 2.27 | 6260 | 802 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5U0A | 8478 | 2024-03-21 | 2016-11-23 | 3.3 | 3.41 | — | 3.4 | 0.012 | 1.37 | 1.0 | 0.08 | 17.12 | 0.01 | 1.667 | 28.66 | 5.48 | 4.6 | 94.8 | 0.6 | -2.78 | 0.65 | 0.74 | 1.61 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 18.79 | 0.00 | 2.102 | 13.06 | 3.00 | 3.3 | 96.6 | 0.1 | 0.29 | 1.91 | 0.73 | 0.85 | 1.62 | 28923 | 3329 | 14 | 144 | 0 | 0 | 0 | logfile |
✔ | 8EW0 | 28639 | 2024-03-16 | 2022-10-21 | 2.7 | 2.71 | 2.65 | 2.7 | 0.003 | 0.57 | 0.0 | 0.04 | 18.44 | 0.00 | 2.224 | 7.02 | 2.82 | 1.9 | 98.0 | 0.1 | 1.98 | 0.68 | 0.90 | 3.71 | 2.7 | 0.003 | 0.53 | 0.0 | 0.04 | 18.45 | 0.00 | 2.235 | 7.24 | 3.65 | 1.6 | 98.3 | 0.1 | 2.54 | 0.87 | 0.68 | 0.91 | 3.95 | 13636 | 1747 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SJR | 25164 | 2024-03-16 | 2021-10-18 | 3.8 | 3.91 | — | 3.8 | 0.005 | 0.79 | 0.0 | 0.04 | 17.63 | 0.01 | 1.895 | 13.38 | 0.08 | 8.9 | 91.1 | 0.0 | -1.61 | 0.77 | 0.83 | 1.72 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 18.95 | 0.00 | 2.070 | 8.91 | 2.50 | 6.0 | 94.0 | 0.0 | -0.21 | 1.12 | 0.76 | 0.83 | 0.77 | 13696 | 1713 | 4 | 35 | 3 | 0 | 0 | logfile |
✔ | 7o6P | 12739 | 2024-03-11 | 2021-04-12 | 2.04 | 2.55 | — | 2.1 | 0.008 | 0.59 | 0.0 | 0.05 | 11.73 | 0.00 | 2.140 | 6.08 | 0.93 | 1.8 | 98.2 | 0.0 | -0.54 | 0.90 | 0.88 | 5.90 | 2.1 | 0.003 | 0.49 | 0.0 | 0.04 | 13.56 | 0.00 | 2.244 | 5.46 | 0.00 | 1.9 | 98.1 | 0.0 | 2.05 | 0.38 | 0.90 | 0.92 | 5.32 | 8276 | 1022 | 8 | 0 | 0 | 268 | 0 | logfile |
✔ | 7LYC | 23592 | 2024-03-18 | 2021-03-06 | 2.94 | 3.08 | 2.92 | 3.1 | 0.006 | 0.65 | 0.0 | 0.04 | 25.82 | 0.00 | 1.314 | 6.99 | 0.10 | 2.2 | 97.8 | 0.0 | -0.02 | 0.73 | 0.82 | 3.48 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 26.23 | 0.00 | 2.183 | 7.65 | 1.57 | 2.7 | 97.3 | 0.0 | 1.65 | 0.27 | 0.72 | 0.81 | 3.11 | 15475 | 1188 | 12 | 293 | 0 | 0 | 0 | logfile |
✔ | 5VT0 | 8732 | 2024-03-21 | 2017-05-15 | 3.78 | 3.90 | — | 3.8 | 0.007 | 1.10 | 0.0 | 0.06 | 13.28 | 0.01 | 2.110 | 6.67 | 0.57 | 7.3 | 92.6 | 0.1 | -3.69 | 0.74 | 0.83 | 2.19 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 16.40 | 0.00 | 2.038 | 11.19 | 2.39 | 7.0 | 93.0 | 0.1 | -0.42 | 1.53 | 0.75 | 0.83 | 1.55 | 31215 | 3669 | 8 | 112 | 3 | 0 | 0 | logfile |
✔ | 7TTH | 26115 | 2024-03-15 | 2022-02-01 | 3.25 | 3.81 | — | 3.7 | 0.004 | 0.70 | 0.0 | 0.05 | 13.05 | 0.00 | 2.232 | 7.80 | 0.00 | 4.5 | 95.5 | 0.0 | -0.01 | 0.55 | 0.71 | 1.99 | 3.7 | 0.003 | 0.86 | 1.0 | 0.05 | 14.23 | 0.00 | 2.097 | 6.20 | 1.75 | 4.7 | 95.3 | 0.0 | 0.59 | 0.51 | 0.65 | 0.79 | 1.71 | 12698 | 1750 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 7EW2 | 31345 | 2024-03-14 | 2021-05-24 | 3.1 | 3.30 | — | 3.4 | 0.003 | 0.77 | 0.0 | 0.05 | 14.19 | 0.00 | 2.201 | 10.55 | 0.61 | 1.7 | 98.3 | 0.0 | -0.25 | 0.60 | 0.68 | 1.56 | 3.4 | 0.004 | 0.92 | 1.0 | 0.05 | 16.11 | 0.00 | 2.194 | 8.76 | 1.84 | 2.6 | 97.4 | 0.0 | 0.33 | 0.39 | 0.60 | 0.73 | 1.57 | 9001 | 1149 | 5 | 0 | 1 | 0 | 0 | logfile |