Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ADG	15362	2023-04-26	2022-07-08	3.0	3.31	3.06	3.3	0.006	0.62	0.0	0.04	14.03	0.00	1.941	3.67	0.00	4.0	96.0	0.0	0.24	0.64	0.82	3.73	3.3	0.003	0.51	0.0	0.04	15.23	0.00	1.375	3.11	1.11	4.0	96.0	0.0	0.35	0.90	0.60	0.83	3.53	23183	1506	6	0	0	0	11375	logfile
✔	7VY3	32193	2023-04-24	2021-11-13	2.63	2.38	—	2.5	0.019	1.84	0.0	0.05	18.70	0.02	2.032	10.93	2.30	2.0	98.0	0.0	1.10	0.70	0.85	4.77	2.5	0.003	0.64	0.0	0.04	17.62	0.00	2.046	10.13	1.58	1.8	98.2	0.0	2.46	1.25	0.71	0.88	4.34	18831	1846	49	0	85	0	0	logfile
✔	6G5i	4353	2023-04-28	2018-03-29	3.5	3.78	—	3.5	0.009	1.25	1.0	0.06	16.47	0.01	1.824	8.06	0.69	10.1	89.8	0.1	-4.49	0.77	0.73	1.91	3.5	0.003	0.69	0.0	0.04	17.46	0.00	2.051	16.52	0.40	6.5	93.5	0.0	-1.93	1.33	0.82	0.81	1.55	77185	5246	39	1657	3	0	0	logfile
✔	7Ui0	26521	2023-04-25	2022-03-28	3.4	3.51	3.43	3.6	0.008	0.81	0.0	0.05	13.94	0.01	2.052	14.18	0.00	5.3	94.7	0.0	-1.38	0.81	0.82	2.16	3.6	0.004	0.63	0.0	0.04	15.79	0.00	2.121	11.79	0.29	3.9	96.1	0.0	-0.88	1.35	0.83	0.86	2.68	19203	2415	9	0	0	0	0	logfile
✔	6XSK	22302	2023-04-24	2020-07-15	3.85	4.41	3.93	4.2	0.006	1.06	0.0	0.07	12.91	0.01	2.271	4.44	0.37	2.1	97.9	0.0	0.19	0.83	0.83	1.60	4.2	0.005	0.73	0.0	0.04	14.84	0.00	2.090	13.35	0.53	3.4	96.6	0.0	0.26	1.63	0.84	0.85	1.85	17322	2163	27	0	36	0	0	logfile
✔	7E9G	31031	2023-04-26	2021-03-04	3.5	2.34	—	3.1	0.004	0.59	0.0	0.10	11.66	0.00	2.196	9.69	0.00	3.8	96.2	0.0	-3.17	0.70	0.67	1.96	1.9	0.004	0.66	0.0	0.04	14.64	0.00	2.144	15.22	0.49	6.0	94.0	0.0	-1.46	0.67	0.72	0.71	1.96	18816	2557	10	0	3	0	0	logfile
✔	7JG1	22309	2023-04-23	2020-07-18	3.3	3.64	3.36	3.8	0.004	0.76	0.0	0.06	12.74	0.01	1.169	5.04	0.33	7.6	92.4	0.0	-1.03	0.55	0.62	1.29	3.8	0.003	0.67	0.0	0.04	15.50	0.00	2.067	8.45	0.44	4.8	94.8	0.4	0.24	1.14	0.60	0.76	1.85	15811	1045	8	0	4	0	7808	logfile
✔	7RR7	24654	2023-04-26	2021-08-09	3.05	3.60	3.05	3.5	0.005	0.77	2.0	0.05	14.15	0.00	2.201	8.22	0.28	3.1	96.9	0.0	0.40	0.76	0.85	2.89	3.5	0.002	0.53	0.0	0.04	14.05	0.00	2.122	8.20	0.28	2.3	97.7	0.0	0.93	0.33	0.77	0.88	2.40	23734	3061	6	0	27	0	0	logfile
✔	7PT6	13619	2023-04-28	2021-09-26	3.2	3.12	—	3.1	0.006	1.06	30.0	0.06	14.96	0.01	1.718	12.07	0.34	3.2	96.8	0.0	-0.49	0.71	0.82	2.72	3.1	0.003	0.54	0.0	0.04	16.37	0.00	1.937	8.11	0.16	2.8	97.2	0.0	0.45	1.51	0.71	0.86	2.62	74358	9282	34	0	52	0	0	logfile
✔	7UKF	26579	2023-04-20	2022-04-01	3.02	3.32	3.06	3.3	0.004	0.61	0.0	0.04	11.50	0.00	2.290	9.17	0.00	2.3	97.7	0.0	1.20	0.58	0.83	3.02	3.3	0.004	0.54	0.0	0.04	14.31	0.00	2.159	9.11	0.24	3.3	96.7	0.0	1.79	0.30	0.57	0.84	2.25	8005	1036	5	0	5	0	0	logfile
✔	7WEE	32448	2023-04-20	2021-12-23	4.0	4.09	—	4.1	0.005	0.72	0.0	0.04	12.68	0.01	2.116	8.35	0.00	4.5	95.5	0.0	-1.60	0.48	0.80	—	4.0	0.005	0.77	0.0	0.05	15.45	0.00	2.086	13.21	0.54	10.4	89.6	0.0	-1.59	0.47	0.47	0.80	—	3350	429	3	0	0	0	0	logfile
✔	7Q4E	13804	2023-04-21	2021-10-30	3.63	3.95	3.60	3.8	0.008	0.99	0.0	0.06	13.94	0.01	1.857	5.12	0.00	2.5	97.5	0.0	-1.91	0.70	0.77	3.06	3.8	0.004	0.61	0.0	0.03	16.07	0.00	1.922	9.65	0.00	4.0	96.0	0.0	1.17	1.50	0.69	0.78	2.09	10049	608	9	0	29	0	4731	logfile
✔	7E26	30952	2023-04-22	2021-02-04	2.29	2.97	—	2.9	0.009	0.93	0.0	0.06	14.05	0.01	2.312	2.69	1.19	1.5	98.5	0.0	-2.93	0.73	0.88	5.43	2.9	0.003	0.51	0.0	0.04	15.93	0.00	2.189	4.06	1.69	1.8	98.2	0.0	1.72	0.32	0.57	0.83	4.90	11360	1435	10	0	0	80	0	logfile
✔	7WA1	32379	2023-04-20	2021-12-11	2.9	3.13	—	3.1	0.003	0.58	0.0	0.04	11.30	0.01	2.103	2.47	1.59	2.8	97.2	0.0	-3.55	0.68	0.82	3.80	3.1	0.003	0.53	0.0	0.04	15.28	0.00	2.187	7.40	2.31	2.9	97.1	0.0	0.48	1.45	0.66	0.83	3.37	6440	790	3	0	1	0	0	logfile
✔	7BoJ	30130	2023-04-25	2020-03-19	2.5	2.54	2.42	2.5	0.007	0.92	0.0	0.06	12.86	0.01	2.271	3.35	0.00	2.4	97.6	0.0	-2.48	0.77	0.86	4.26	2.5	0.005	0.67	0.0	0.05	15.81	0.00	2.132	7.61	2.17	2.2	97.8	0.0	1.73	1.86	0.78	0.88	4.15	121500	15900	60	0	0	0	0	logfile
✔	7SCA	25031	2023-04-20	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.28	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	7XM1	33289	2023-04-21	2022-04-24	3.96	3.41	3.91	4.0	0.002	0.43	0.0	0.04	15.16	0.00	2.503	2.22	0.00	3.3	96.7	0.0	2.33	0.73	0.81	1.85	3.9	0.003	0.56	0.0	0.04	18.87	0.00	2.214	4.30	0.31	3.3	96.7	0.0	2.60	0.65	0.74	0.83	1.49	60240	7380	101	0	60	0	0	logfile
✔	7T11	25587	2023-04-20	2021-11-30	2.7	2.94	—	3.0	0.004	0.61	0.0	0.04	10.76	0.00	2.107	3.46	0.27	2.4	97.6	0.0	0.96	0.60	0.74	3.90	3.0	0.005	0.68	0.0	0.04	13.72	0.00	2.232	3.33	0.93	3.5	96.5	0.0	0.85	0.43	0.62	0.80	3.68	8151	1132	6	0	2	0	0	logfile
✔	7L86	23223	2023-04-23	2020-12-31	3.4	3.54	3.36	3.5	0.023	1.70	0.0	0.14	9.63	0.02	2.361	1.29	0.00	1.5	98.5	0.0	0.96	0.73	0.84	4.17	3.5	0.003	0.61	0.0	0.04	14.38	0.00	2.193	6.14	0.27	2.1	97.9	0.0	0.31	1.21	0.72	0.85	3.03	15802	1686	47	0	323	0	0	logfile
✔	7X6A	33019	2023-04-29	2022-03-07	3.5	3.86	—	3.8	0.002	0.52	0.0	0.04	14.04	0.00	1.981	7.25	0.06	6.2	93.5	0.4	-1.29	0.76	0.78	1.61	3.8	0.002	0.59	0.0	0.04	15.95	0.00	2.124	6.71	0.21	6.0	93.6	0.4	-0.96	1.67	0.76	0.80	1.92	30879	3969	9	0	0	0	0	logfile

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