Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WXU	21963	2023-02-22	2020-05-12	2.7	3.26	—	3.2	0.011	0.84	0.0	0.05	12.82	0.01	2.193	4.00	1.85	4.8	95.2	0.0	-3.08	0.74	0.85	3.80	3.2	0.004	0.63	0.0	0.04	15.05	0.00	2.263	4.56	2.28	5.1	94.9	0.0	0.18	0.44	0.71	0.85	3.38	18156	2214	10	0	40	0	0	logfile
✔	6CM9	7457	2023-02-22	2018-03-03	3.73	3.82	—	3.8	0.009	1.02	0.0	0.06	11.58	0.01	1.906	5.76	0.26	8.0	92.0	0.0	-4.83	0.73	0.78	2.28	3.8	0.003	0.68	0.0	0.04	15.97	0.00	1.987	12.37	0.15	4.3	95.7	0.0	-1.20	1.33	0.72	0.79	1.23	17683	2194	11	0	4	0	0	logfile
✔	6ZBD	11151	2023-02-23	2020-06-08	3.21	3.97	3.37	3.6	0.010	1.19	0.0	0.08	13.68	0.01	2.466	0.97	0.00	0.9	99.1	0.0	0.87	0.85	0.78	1.78	3.6	0.002	0.50	0.0	0.03	15.08	0.00	2.000	5.02	0.27	1.5	98.5	0.0	3.93	2.62	0.86	0.80	1.77	19519	1159	4	0	0	0	9896	logfile
✔	7VYN	32210	2023-02-27	2021-11-14	2.4	2.47	—	2.5	0.008	0.78	1.0	0.05	16.97	0.01	2.198	5.50	1.15	3.5	96.5	0.1	0.41	0.77	0.91	5.04	2.4	0.003	0.57	0.0	0.04	17.05	0.00	2.157	4.55	1.68	3.5	96.5	0.1	0.59	0.60	0.76	0.92	5.01	29298	3543	45	0	20	735	0	logfile
✔	5TQQ	8435	2023-02-20	2016-10-24	3.76	2.84	—	3.8	0.008	1.52	32.0	0.09	12.22	0.01	2.136	6.30	0.89	4.7	95.2	0.1	-0.21	0.64	0.72	1.71	3.8	0.003	0.68	0.0	0.04	14.63	0.00	2.137	13.21	0.30	2.5	97.5	0.0	1.58	1.52	0.69	0.83	1.42	12574	1642	6	0	0	0	0	logfile
✔	7UMQ	26607	2023-02-17	2022-04-07	3.29	3.64	3.16	4.2	0.023	2.11	0.0	0.10	9.85	0.01	2.540	2.21	0.00	10.0	90.0	0.0	-3.35	0.51	0.74	5.90	3.8	0.004	0.82	0.0	0.04	14.19	0.00	2.328	17.58	1.03	10.0	90.0	0.0	-4.97	3.38	0.43	0.75	4.50	4380	620	10	0	0	0	0	logfile
✔	7W3V	32294	2023-02-18	2021-11-26	3.11	2.33	3.12	2.1	0.003	0.55	0.0	0.05	14.21	0.00	2.228	7.96	0.12	5.7	94.3	0.0	-2.67	0.79	0.79	3.31	2.1	0.003	0.58	0.0	0.05	15.78	0.00	2.267	7.69	0.74	5.6	94.4	0.0	-2.51	0.30	0.80	0.81	2.85	7480	918	8	0	24	0	0	logfile
✔	6MDR	9104	2023-02-27	2018-09-05	3.47	3.55	—	3.5	0.007	0.93	0.0	0.06	9.55	0.01	2.349	3.19	0.00	6.6	93.4	0.0	-3.18	0.74	0.84	4.46	3.5	0.003	0.64	0.0	0.05	14.81	0.00	2.236	7.00	0.12	5.9	94.1	0.0	-1.01	1.27	0.72	0.85	3.18	29456	3696	16	0	0	0	0	logfile
✔	6ZBC	11150	2023-02-23	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	1.08	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.49	0.0	0.03	15.14	0.00	2.071	3.69	0.18	1.4	98.6	0.0	4.05	0.84	0.85	0.81	1.66	19534	1160	4	0	0	0	9902	logfile
✔	7WoG	32651	2023-02-17	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.04	10.94	0.00	2.020	21.35	0.00	13.1	86.9	0.0	-2.59	1.02	0.54	0.55	—	3362	433	3	0	0	0	0	logfile
✔	7QKW	14055	2023-02-17	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.50	0.0	0.05	16.64	0.00	2.420	1.91	2.54	4.4	95.6	0.0	-2.76	1.36	0.41	0.84	5.96	4707	306	6	0	0	0	2439	logfile
✔	8H8A	34540	2023-02-18	2022-10-22	3.25	3.39	3.26	3.4	0.002	0.50	0.0	0.04	12.99	0.00	2.298	6.57	1.55	8.7	91.2	0.1	-3.31	0.71	0.79	2.16	3.4	0.003	0.66	0.0	0.04	15.54	0.00	2.234	6.27	0.22	11.9	87.9	0.2	-2.50	1.14	0.77	0.89	3.84	8454	1039	2	0	0	0	0	logfile
✔	8H8C	34542	2023-02-22	2022-10-22	3.36	3.50	3.41	3.5	0.002	0.47	0.0	0.04	13.15	0.00	2.223	7.53	1.83	9.1	90.9	0.0	-4.07	0.67	0.73	2.31	3.5	0.003	0.67	0.0	0.04	16.15	0.00	2.090	9.51	0.22	13.4	86.6	0.0	-3.43	0.70	0.71	0.82	2.83	16940	2078	4	0	0	0	0	logfile
✔	7QKK	14045	2023-02-17	2021-12-17	2.8	2.31	2.82	3.2	0.012	2.17	4.0	0.12	13.17	0.02	2.483	1.41	0.00	9.5	90.5	0.0	-3.44	0.37	0.77	4.39	3.2	0.003	0.67	0.0	0.05	17.21	0.00	2.149	11.32	1.01	7.7	92.3	0.0	-3.49	2.18	0.34	0.79	3.16	3537	228	3	0	0	0	1803	logfile
✔	6DMo	7964	2023-02-18	2018-06-05	4.1	4.16	—	4.1	0.008	1.26	0.0	0.06	13.66	0.01	1.764	8.90	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.003	0.83	0.0	0.05	13.81	0.00	2.145	14.05	0.00	9.1	90.9	0.0	-0.53	2.49	0.58	0.72	—	7853	982	3	0	7	0	0	logfile
✔	7oS2	13046	2023-02-22	2021-06-07	2.76	3.34	—	3.1	0.005	0.56	0.0	0.04	12.08	0.00	2.209	7.96	0.93	2.2	97.8	0.0	0.65	0.90	0.89	4.03	3.1	0.002	0.60	0.0	0.04	14.70	0.00	2.205	8.56	1.53	2.1	97.9	0.0	1.13	0.50	0.90	0.90	3.31	16485	2046	3	0	0	0	0	logfile
✔	6Ni3	9376	2023-02-22	2018-12-26	3.8	4.22	—	4.0	0.010	1.37	0.0	0.07	10.64	0.01	2.258	4.54	0.23	5.3	94.7	0.0	-2.86	0.75	0.76	1.71	4.0	0.003	0.81	0.0	0.04	14.97	0.00	2.166	11.95	0.69	3.7	96.3	0.0	0.45	2.51	0.76	0.78	1.45	8136	1043	6	0	1	0	0	logfile
✔	6ZBE	11152	2023-02-23	2020-06-08	3.3	4.04	3.36	3.7	0.010	1.16	0.0	0.08	13.39	0.01	2.470	1.13	0.00	0.8	99.2	0.0	0.61	0.84	0.76	1.69	3.7	0.004	0.53	0.0	0.03	15.47	0.00	2.081	5.89	0.09	1.9	98.1	0.0	3.65	1.52	0.85	0.79	1.32	19534	1160	4	0	0	0	9902	logfile
✔	6NPY	0476	2023-02-18	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.58	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.003	0.91	0.0	0.05	17.24	0.00	2.196	17.30	0.60	10.2	89.8	0.0	-2.29	1.10	0.78	0.70	0.72	7586	965	3	0	1	0	0	logfile
✔	7QKM	14047	2023-02-17	2021-12-17	2.66	2.80	2.61	2.7	0.010	1.89	1.0	0.11	12.52	0.01	2.548	0.00	0.00	7.2	92.8	0.0	-1.95	0.42	0.86	6.21	2.7	0.002	0.53	0.0	0.05	16.30	0.00	1.981	4.94	0.68	4.4	95.6	0.0	-1.70	1.31	0.39	0.89	5.83	5070	330	6	0	0	0	2634	logfile

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