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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7R76 | 24292 | 2023-08-13 | 2021-06-24 | 3.2 | 3.43 | — | 3.3 | 0.008 | 1.02 | 1.0 | 0.06 | 14.99 | 0.01 | 1.995 | 12.70 | 0.38 | 9.0 | 91.0 | 0.0 | -2.71 | 0.74 | 0.79 | 2.24 | 3.3 | 0.004 | 0.67 | 0.0 | 0.04 | 16.55 | 0.00 | 1.971 | 11.52 | 0.13 | 6.5 | 93.5 | 0.0 | -1.14 | 0.42 | 0.74 | 0.80 | 2.12 | 14500 | 1834 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 5U6o | 8511 | 2023-08-13 | 2016-12-08 | 3.5 | 3.58 | — | 3.5 | 0.008 | 1.44 | 0.0 | 0.08 | 11.34 | 0.01 | 2.380 | 2.59 | 0.00 | 4.6 | 95.4 | 0.0 | 1.02 | 0.54 | 0.66 | 2.98 | 3.5 | 0.002 | 0.61 | 0.0 | 0.04 | 15.08 | 0.00 | 2.203 | 9.26 | 0.37 | 1.9 | 98.1 | 0.0 | 2.22 | 0.66 | 0.67 | 0.82 | 1.80 | 14480 | 1928 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y4S | 33606 | 2023-08-09 | 2022-06-16 | 3.5 | 3.72 | 3.47 | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 12.74 | 0.01 | 2.373 | 5.20 | 0.46 | 2.9 | 97.1 | 0.0 | 1.47 | 0.69 | 0.77 | 3.18 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 15.07 | 0.00 | 2.245 | 9.12 | 0.69 | 2.5 | 97.5 | 0.0 | 2.64 | 1.58 | 0.73 | 0.79 | 2.96 | 4940 | 686 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YDQ | 33756 | 2023-08-09 | 2022-07-04 | 4.04 | 4.32 | 4.02 | 4.4 | 0.011 | 0.82 | 0.0 | 0.04 | 17.28 | 0.01 | 2.262 | 10.34 | 0.57 | 3.2 | 96.8 | 0.0 | 1.21 | 0.46 | 0.63 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.04 | 14.00 | 0.00 | 2.257 | 10.03 | 0.19 | 3.6 | 96.4 | 0.0 | 0.89 | 0.55 | 0.55 | 0.69 | — | 4778 | 598 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7WLL | 32587 | 2023-08-11 | 2022-01-13 | 3.6 | 3.89 | — | 3.8 | 0.012 | 1.19 | 2.0 | 0.08 | 15.09 | 0.00 | 2.026 | 13.97 | 0.50 | 7.3 | 92.6 | 0.1 | -0.42 | 0.60 | 0.81 | 1.99 | 3.9 | 0.003 | 0.82 | 0.0 | 0.06 | 16.22 | 0.00 | 2.190 | 11.34 | 0.30 | 5.2 | 94.8 | 0.0 | 0.66 | 1.18 | 0.59 | 0.80 | 1.18 | 9540 | 1135 | 1 | 0 | 21 | 0 | 0 | logfile |
✔ | 7DFH | 30664 | 2023-08-11 | 2020-11-08 | 2.97 | 3.14 | — | 3.1 | 0.008 | 0.93 | 0.0 | 0.06 | 13.96 | 0.01 | 2.159 | 5.69 | 0.09 | 3.4 | 96.6 | 0.0 | -3.16 | 0.70 | 0.82 | 2.92 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 15.83 | 0.00 | 2.105 | 8.96 | 1.99 | 2.4 | 97.6 | 0.0 | 0.07 | 1.18 | 0.70 | 0.84 | 2.43 | 9980 | 1191 | 9 | 20 | 8 | 2 | 0 | logfile |
✔ | 7RZE | 24757 | 2023-08-14 | 2021-08-27 | 3.3 | 3.26 | — | 3.4 | 0.005 | 0.97 | 0.0 | 0.06 | 13.09 | 0.01 | 2.098 | 10.04 | 0.30 | 3.9 | 96.1 | 0.0 | -3.81 | 0.64 | 0.77 | 2.14 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 16.27 | 0.00 | 2.209 | 7.84 | 0.65 | 4.7 | 95.3 | 0.0 | -0.04 | 0.64 | 0.67 | 0.82 | 2.29 | 15545 | 1898 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XD7 | 33138 | 2023-08-10 | 2022-03-26 | 3.02 | 3.40 | — | 3.1 | 0.003 | 0.61 | 0.0 | 0.04 | 14.03 | 0.00 | 1.736 | 0.77 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.86 | — | 3.1 | 0.007 | 0.66 | 0.0 | 0.04 | 15.12 | 0.00 | 1.878 | 8.19 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.01 | 0.92 | 0.92 | — | 8693 | 0 | 1 | 405 | 30 | 0 | 0 | logfile |
✔ | 6E1N | 8958 | 2023-08-12 | 2018-07-10 | 3.7 | 3.85 | 3.77 | 3.8 | 0.015 | 1.55 | 0.0 | 0.07 | 14.72 | 0.01 | 2.054 | 10.59 | 0.37 | 8.3 | 91.6 | 0.2 | -5.21 | 0.49 | 0.72 | 1.63 | 3.8 | 0.003 | 0.80 | 0.0 | 0.04 | 16.01 | 0.00 | 2.211 | 13.08 | 0.74 | 5.8 | 94.2 | 0.0 | -0.96 | 0.89 | 0.52 | 0.72 | 0.61 | 10682 | 1278 | 6 | 0 | 24 | 2 | 0 | logfile |
✔ | 7RXA | 24726 | 2023-08-10 | 2021-08-22 | 3.08 | 3.22 | — | 3.3 | 0.006 | 1.11 | 0.0 | 0.05 | 15.07 | 0.01 | 2.381 | 1.32 | 0.00 | 5.4 | 94.6 | 0.0 | -4.42 | 0.67 | 0.84 | 2.99 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 13.97 | 0.00 | 2.236 | 3.35 | 0.00 | 5.0 | 95.0 | 0.0 | 0.66 | 0.32 | 0.67 | 0.85 | 2.86 | 8694 | 1156 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 7DA5 | 30623 | 2023-08-09 | 2020-10-14 | 3.3 | 3.66 | — | 3.8 | 0.008 | 1.21 | 10.0 | 0.09 | 16.47 | 0.01 | 1.673 | 16.04 | 10.06 | 9.1 | 90.6 | 0.3 | -3.63 | 0.43 | 0.58 | 1.81 | 3.7 | 0.004 | 0.78 | 0.0 | 0.04 | 16.11 | 0.00 | 2.233 | 8.41 | 0.91 | 5.1 | 94.9 | 0.0 | 0.00 | 1.49 | 0.49 | 0.71 | 2.09 | 4013 | 591 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JY6 | 22522 | 2023-08-23 | 2020-08-29 | 2.5 | 2.57 | — | 2.6 | 0.014 | 1.92 | 8.0 | 0.10 | 19.65 | 0.01 | 2.153 | 0.83 | 5.06 | 3.7 | 96.0 | 0.3 | -2.63 | 0.56 | 0.66 | 3.32 | 2.6 | 0.004 | 0.63 | 0.0 | 0.04 | 20.36 | 0.00 | 1.819 | 3.65 | 2.06 | 2.5 | 97.5 | 0.0 | 0.30 | 0.80 | 0.65 | 0.75 | 2.68 | 47849 | 2964 | 20 | 72 | 18 | 0 | 23799 | logfile |
✔ | 6oT5 | 20194 | 2023-08-22 | 2019-05-02 | 3.6 | 3.71 | 3.54 | 3.7 | 0.009 | 0.86 | 0.0 | 0.05 | 10.12 | 0.00 | 1.623 | 6.48 | 0.00 | 3.0 | 97.0 | 0.0 | -2.73 | 0.65 | 0.76 | 3.18 | 3.7 | 0.005 | 0.60 | 0.0 | 0.03 | 13.54 | 0.00 | 1.951 | 6.51 | 0.21 | 5.2 | 94.8 | 0.0 | 0.20 | 0.83 | 0.68 | 0.79 | 2.71 | 33420 | 2444 | 8 | 0 | 52 | 0 | 15620 | logfile |
✔ | 6UW6 | 20918 | 2023-08-16 | 2019-11-04 | 3.66 | 3.79 | — | 3.8 | 0.015 | 1.24 | 0.0 | 0.07 | 16.71 | 0.01 | 2.299 | 5.68 | 0.00 | 8.4 | 91.6 | 0.0 | -4.85 | 0.70 | 0.84 | 2.14 | 3.8 | 0.002 | 0.61 | 0.0 | 0.04 | 17.33 | 0.00 | 2.192 | 7.93 | 0.33 | 6.4 | 93.6 | 0.0 | 0.47 | 0.58 | 0.69 | 0.83 | 1.52 | 20072 | 2408 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 6C6T | 7350 | 2023-08-19 | 2018-01-19 | 3.5 | 3.64 | — | 3.6 | 0.010 | 1.14 | 0.0 | 0.07 | 13.19 | 0.01 | 1.993 | 7.52 | 0.72 | 8.1 | 91.6 | 0.3 | -4.12 | 0.74 | 0.81 | 2.49 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 16.34 | 0.00 | 2.026 | 10.97 | 0.47 | 5.9 | 94.0 | 0.1 | -0.50 | 0.67 | 0.75 | 0.81 | 1.52 | 26915 | 3262 | 11 | 68 | 3 | 0 | 0 | logfile |
✔ | 6WXB | 21954 | 2023-08-17 | 2020-05-10 | 2.9 | 3.45 | 2.92 | 3.4 | 0.007 | 0.85 | 0.0 | 0.05 | 13.74 | 0.00 | 2.307 | 1.70 | 0.71 | 5.6 | 94.4 | 0.0 | -2.98 | 0.60 | 0.76 | 4.10 | 3.4 | 0.004 | 0.56 | 0.0 | 0.04 | 15.28 | 0.00 | 2.119 | 7.47 | 1.18 | 6.1 | 93.9 | 0.0 | -0.62 | 1.59 | 0.56 | 0.75 | 3.70 | 22698 | 1455 | 6 | 0 | 15 | 0 | 11049 | logfile |
✔ | 6VZ1 | 21481 | 2023-08-10 | 2020-02-27 | 3.2 | 3.35 | — | 3.4 | 0.014 | 1.25 | 0.0 | 0.06 | 19.42 | 0.01 | 1.864 | 10.74 | 0.00 | 12.0 | 88.0 | 0.0 | -4.38 | 0.59 | 0.86 | 3.07 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 17.88 | 0.00 | 2.184 | 8.23 | 0.42 | 5.5 | 94.5 | 0.0 | -0.43 | 1.28 | 0.54 | 0.84 | 2.65 | 7112 | 822 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6C6S | 7349 | 2023-08-19 | 2018-01-19 | 3.7 | 3.78 | — | 3.7 | 0.009 | 1.06 | 0.0 | 0.06 | 12.85 | 0.01 | 2.060 | 6.47 | 0.38 | 8.3 | 91.5 | 0.2 | -4.10 | 0.75 | 0.83 | 2.35 | 3.7 | 0.007 | 0.80 | 0.0 | 0.05 | 16.66 | 0.00 | 1.885 | 15.16 | 0.56 | 7.8 | 92.1 | 0.1 | -1.24 | 1.53 | 0.76 | 0.84 | 2.04 | 27691 | 3360 | 11 | 68 | 3 | 0 | 0 | logfile |
✔ | 7XMS | 33303 | 2023-08-10 | 2022-04-26 | 2.9 | 3.10 | 2.83 | 3.2 | 0.002 | 0.46 | 0.0 | 0.04 | 10.09 | 0.00 | 2.251 | 6.90 | 0.00 | 2.9 | 97.1 | 0.0 | -4.06 | 0.55 | 0.65 | 1.49 | 3.1 | 0.004 | 0.76 | 0.0 | 0.04 | 14.98 | 0.00 | 2.040 | 14.79 | 1.73 | 3.7 | 96.3 | 0.0 | -0.47 | 0.80 | 0.61 | 0.76 | 2.09 | 8370 | 1113 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WB2 | 21585 | 2023-08-10 | 2020-03-26 | 4.5 | 4.71 | — | 4.5 | 0.002 | 0.44 | 0.0 | 0.04 | 11.33 | 0.00 | 2.293 | 7.78 | 0.17 | 3.1 | 96.9 | 0.0 | -3.59 | 0.86 | 0.80 | — | 4.5 | 0.002 | 0.56 | 0.0 | 0.04 | 12.11 | 0.00 | 2.206 | 8.83 | 0.00 | 3.3 | 96.7 | 0.0 | -0.40 | 0.64 | 0.86 | 0.82 | — | 8407 | 946 | 4 | 75 | 0 | 0 | 0 | logfile |