Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R76	24292	2023-08-13	2021-06-24	3.2	3.43	—	3.3	0.008	1.02	1.0	0.06	14.99	0.01	1.995	12.70	0.38	9.0	91.0	0.0	-2.71	0.74	0.79	2.24	3.3	0.004	0.67	0.0	0.04	16.55	0.00	1.971	11.52	0.13	6.5	93.5	0.0	-1.14	0.42	0.74	0.80	2.12	14500	1834	1	0	5	0	0	logfile
✔	5U6o	8511	2023-08-13	2016-12-08	3.5	3.58	—	3.5	0.008	1.44	0.0	0.08	11.34	0.01	2.380	2.59	0.00	4.6	95.4	0.0	1.02	0.54	0.66	2.98	3.5	0.002	0.61	0.0	0.04	15.08	0.00	2.203	9.26	0.37	1.9	98.1	0.0	2.22	0.66	0.67	0.82	1.80	14480	1928	4	0	0	0	0	logfile
✔	7Y4S	33606	2023-08-09	2022-06-16	3.5	3.72	3.47	3.8	0.004	0.74	0.0	0.04	12.74	0.01	2.373	5.20	0.46	2.9	97.1	0.0	1.47	0.69	0.77	3.18	3.8	0.003	0.59	0.0	0.04	15.07	0.00	2.245	9.12	0.69	2.5	97.5	0.0	2.64	1.58	0.73	0.79	2.96	4940	686	2	0	0	0	0	logfile
✔	7YDQ	33756	2023-08-09	2022-07-04	4.04	4.32	4.02	4.4	0.011	0.82	0.0	0.04	17.28	0.01	2.262	10.34	0.57	3.2	96.8	0.0	1.21	0.46	0.63	—	4.4	0.003	0.72	0.0	0.04	14.00	0.00	2.257	10.03	0.19	3.6	96.4	0.0	0.89	0.55	0.55	0.69	—	4778	598	1	0	1	0	0	logfile
✔	7WLL	32587	2023-08-11	2022-01-13	3.6	3.89	—	3.8	0.012	1.19	2.0	0.08	15.09	0.00	2.026	13.97	0.50	7.3	92.6	0.1	-0.42	0.60	0.81	1.99	3.9	0.003	0.82	0.0	0.06	16.22	0.00	2.190	11.34	0.30	5.2	94.8	0.0	0.66	1.18	0.59	0.80	1.18	9540	1135	1	0	21	0	0	logfile
✔	7DFH	30664	2023-08-11	2020-11-08	2.97	3.14	—	3.1	0.008	0.93	0.0	0.06	13.96	0.01	2.159	5.69	0.09	3.4	96.6	0.0	-3.16	0.70	0.82	2.92	3.1	0.003	0.57	0.0	0.04	15.83	0.00	2.105	8.96	1.99	2.4	97.6	0.0	0.07	1.18	0.70	0.84	2.43	9980	1191	9	20	8	2	0	logfile
✔	7RZE	24757	2023-08-14	2021-08-27	3.3	3.26	—	3.4	0.005	0.97	0.0	0.06	13.09	0.01	2.098	10.04	0.30	3.9	96.1	0.0	-3.81	0.64	0.77	2.14	3.3	0.003	0.66	0.0	0.04	16.27	0.00	2.209	7.84	0.65	4.7	95.3	0.0	-0.04	0.64	0.67	0.82	2.29	15545	1898	4	0	0	0	0	logfile
✔	7XD7	33138	2023-08-10	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	14.03	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.66	0.0	0.04	15.12	0.00	1.878	8.19	0.00	0.0	0.0	0.0	—	2.01	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	6E1N	8958	2023-08-12	2018-07-10	3.7	3.85	3.77	3.8	0.015	1.55	0.0	0.07	14.72	0.01	2.054	10.59	0.37	8.3	91.6	0.2	-5.21	0.49	0.72	1.63	3.8	0.003	0.80	0.0	0.04	16.01	0.00	2.211	13.08	0.74	5.8	94.2	0.0	-0.96	0.89	0.52	0.72	0.61	10682	1278	6	0	24	2	0	logfile
✔	7RXA	24726	2023-08-10	2021-08-22	3.08	3.22	—	3.3	0.006	1.11	0.0	0.05	15.07	0.01	2.381	1.32	0.00	5.4	94.6	0.0	-4.42	0.67	0.84	2.99	3.3	0.004	0.59	0.0	0.04	13.97	0.00	2.236	3.35	0.00	5.0	95.0	0.0	0.66	0.32	0.67	0.85	2.86	8694	1156	4	0	8	0	0	logfile
✔	7DA5	30623	2023-08-09	2020-10-14	3.3	3.66	—	3.8	0.008	1.21	10.0	0.09	16.47	0.01	1.673	16.04	10.06	9.1	90.6	0.3	-3.63	0.43	0.58	1.81	3.7	0.004	0.78	0.0	0.04	16.11	0.00	2.233	8.41	0.91	5.1	94.9	0.0	0.00	1.49	0.49	0.71	2.09	4013	591	2	0	0	0	0	logfile
✔	7JY6	22522	2023-08-23	2020-08-29	2.5	2.57	—	2.6	0.014	1.92	8.0	0.10	19.65	0.01	2.153	0.83	5.06	3.7	96.0	0.3	-2.63	0.56	0.66	3.32	2.6	0.004	0.63	0.0	0.04	20.36	0.00	1.819	3.65	2.06	2.5	97.5	0.0	0.30	0.80	0.65	0.75	2.68	47849	2964	20	72	18	0	23799	logfile
✔	6oT5	20194	2023-08-22	2019-05-02	3.6	3.71	3.54	3.7	0.009	0.86	0.0	0.05	10.12	0.00	1.623	6.48	0.00	3.0	97.0	0.0	-2.73	0.65	0.76	3.18	3.7	0.005	0.60	0.0	0.03	13.54	0.00	1.951	6.51	0.21	5.2	94.8	0.0	0.20	0.83	0.68	0.79	2.71	33420	2444	8	0	52	0	15620	logfile
✔	6UW6	20918	2023-08-16	2019-11-04	3.66	3.79	—	3.8	0.015	1.24	0.0	0.07	16.71	0.01	2.299	5.68	0.00	8.4	91.6	0.0	-4.85	0.70	0.84	2.14	3.8	0.002	0.61	0.0	0.04	17.33	0.00	2.192	7.93	0.33	6.4	93.6	0.0	0.47	0.58	0.69	0.83	1.52	20072	2408	8	0	20	0	0	logfile
✔	6C6T	7350	2023-08-19	2018-01-19	3.5	3.64	—	3.6	0.010	1.14	0.0	0.07	13.19	0.01	1.993	7.52	0.72	8.1	91.6	0.3	-4.12	0.74	0.81	2.49	3.6	0.003	0.64	0.0	0.04	16.34	0.00	2.026	10.97	0.47	5.9	94.0	0.1	-0.50	0.67	0.75	0.81	1.52	26915	3262	11	68	3	0	0	logfile
✔	6WXB	21954	2023-08-17	2020-05-10	2.9	3.45	2.92	3.4	0.007	0.85	0.0	0.05	13.74	0.00	2.307	1.70	0.71	5.6	94.4	0.0	-2.98	0.60	0.76	4.10	3.4	0.004	0.56	0.0	0.04	15.28	0.00	2.119	7.47	1.18	6.1	93.9	0.0	-0.62	1.59	0.56	0.75	3.70	22698	1455	6	0	15	0	11049	logfile
✔	6VZ1	21481	2023-08-10	2020-02-27	3.2	3.35	—	3.4	0.014	1.25	0.0	0.06	19.42	0.01	1.864	10.74	0.00	12.0	88.0	0.0	-4.38	0.59	0.86	3.07	3.4	0.003	0.60	0.0	0.04	17.88	0.00	2.184	8.23	0.42	5.5	94.5	0.0	-0.43	1.28	0.54	0.84	2.65	7112	822	4	0	6	0	0	logfile
✔	6C6S	7349	2023-08-19	2018-01-19	3.7	3.78	—	3.7	0.009	1.06	0.0	0.06	12.85	0.01	2.060	6.47	0.38	8.3	91.5	0.2	-4.10	0.75	0.83	2.35	3.7	0.007	0.80	0.0	0.05	16.66	0.00	1.885	15.16	0.56	7.8	92.1	0.1	-1.24	1.53	0.76	0.84	2.04	27691	3360	11	68	3	0	0	logfile
✔	7XMS	33303	2023-08-10	2022-04-26	2.9	3.10	2.83	3.2	0.002	0.46	0.0	0.04	10.09	0.00	2.251	6.90	0.00	2.9	97.1	0.0	-4.06	0.55	0.65	1.49	3.1	0.004	0.76	0.0	0.04	14.98	0.00	2.040	14.79	1.73	3.7	96.3	0.0	-0.47	0.80	0.61	0.76	2.09	8370	1113	6	0	0	0	0	logfile
✔	6WB2	21585	2023-08-10	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.78	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.56	0.0	0.04	12.11	0.00	2.206	8.83	0.00	3.3	96.7	0.0	-0.40	0.64	0.86	0.82	—	8407	946	4	75	0	0	0	logfile

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