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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6QJM | 4564 | 2024-03-10 | 2019-01-24 | 3.3 | 3.49 | 1.95 | 3.4 | 0.010 | 1.01 | 0.0 | 0.07 | 8.06 | 0.01 | 2.408 | 6.17 | 0.00 | 9.1 | 90.9 | 0.0 | -2.36 | 0.38 | 0.76 | 3.31 | 3.5 | 0.003 | 0.60 | 0.0 | 0.05 | 13.63 | 0.00 | 2.152 | 6.17 | 2.86 | 7.1 | 92.9 | 0.0 | -2.38 | 1.59 | 0.33 | 0.73 | 3.53 | 846 | 111 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QJZ | 14027 | 2024-03-10 | 2021-12-17 | 3.4 | 3.37 | 3.42 | 3.5 | 0.011 | 2.09 | 0.0 | 0.10 | 13.72 | 0.01 | 2.490 | 0.44 | 0.00 | 5.3 | 94.4 | 0.2 | -3.28 | 0.40 | 0.74 | 4.32 | 3.4 | 0.004 | 0.77 | 0.0 | 0.05 | 14.75 | 0.00 | 2.226 | 9.30 | 3.33 | 7.6 | 92.4 | 0.0 | -3.19 | 2.58 | 0.37 | 0.77 | 4.32 | 3378 | 444 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EHS | 28151 | 2024-03-11 | 2022-09-14 | 3.3 | 2.87 | 3.21 | 3.3 | 0.002 | 0.47 | 0.0 | 0.04 | 14.12 | 0.00 | 2.082 | 3.04 | 0.00 | 1.3 | 98.7 | 0.0 | 1.50 | 0.54 | 0.80 | 3.22 | 3.3 | 0.003 | 0.55 | 0.0 | 0.05 | 15.71 | 0.00 | 2.253 | 5.21 | 4.05 | 1.8 | 98.2 | 0.0 | 0.25 | 0.49 | 0.54 | 0.83 | 2.81 | 7546 | 1015 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UFR | 20759 | 2024-03-10 | 2019-09-24 | 2.5 | 2.80 | — | 2.8 | 0.012 | 0.96 | 0.0 | 0.07 | 13.71 | 0.01 | 2.209 | 5.48 | 0.00 | 6.6 | 93.4 | 0.0 | -1.99 | 0.50 | 0.87 | 5.55 | 2.8 | 0.003 | 0.59 | 0.0 | 0.05 | 16.19 | 0.00 | 2.358 | 2.46 | 3.86 | 4.9 | 95.1 | 0.0 | -0.81 | 0.92 | 0.52 | 0.89 | 4.96 | 4420 | 630 | 20 | 0 | 0 | 90 | 0 | logfile |
✔ | 6N9Y | 0383 | 2024-03-10 | 2018-12-04 | 4.0 | 3.80 | — | 3.7 | 0.008 | 1.10 | 0.0 | 0.05 | 10.30 | 0.01 | 2.229 | 4.80 | 0.42 | 9.1 | 90.9 | 0.0 | -4.98 | 0.38 | 0.73 | — | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 15.19 | 0.00 | 2.157 | 13.73 | 3.33 | 8.5 | 91.5 | 0.0 | -0.83 | 1.76 | 0.40 | 0.79 | — | 4527 | 552 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DWV | 30887 | 2024-03-10 | 2021-01-18 | 3.07 | 2.95 | — | 3.6 | 0.007 | 0.80 | 0.0 | 0.06 | 14.69 | 0.00 | 2.258 | 16.67 | 0.00 | 26.8 | 73.2 | 0.0 | -7.45 | 0.41 | 0.75 | 4.09 | 4.1 | 0.004 | 0.78 | 0.0 | 0.05 | 17.73 | 0.00 | 2.189 | 18.12 | 19.05 | 23.6 | 76.4 | 0.0 | -6.14 | 1.49 | 0.41 | 0.75 | 2.77 | 2064 | 258 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Xo3 | 33335 | 2024-03-10 | 2022-04-30 | 2.6 | 2.32 | 1.68 | 2.7 | 0.002 | 0.41 | 0.0 | 0.05 | 12.37 | 0.00 | 2.223 | 4.70 | 0.00 | 8.2 | 91.8 | 0.0 | -3.31 | 0.45 | 0.81 | 5.78 | 2.6 | 0.004 | 0.57 | 0.0 | 0.05 | 16.17 | 0.00 | 2.274 | 2.63 | 3.03 | 11.7 | 88.3 | 0.0 | -1.86 | 0.39 | 0.50 | 0.85 | 5.90 | 2598 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JH7 | 22335 | 2024-03-22 | 2020-07-20 | 3.8 | 3.91 | — | 3.8 | 0.006 | 1.03 | 0.0 | 0.06 | 10.79 | 0.01 | 1.864 | 9.32 | 0.43 | 6.7 | 93.3 | 0.0 | -4.13 | 0.69 | 0.69 | 1.54 | 3.8 | 0.005 | 0.80 | 0.0 | 0.05 | 15.69 | 0.00 | 1.916 | 18.39 | 3.28 | 7.6 | 92.4 | 0.0 | -1.59 | 0.95 | 0.80 | 0.80 | 1.77 | 33924 | 4081 | 15 | 0 | 280 | 0 | 0 | logfile |
✔ | 3J8i | 6179 | 2024-03-16 | 2014-11-06 | 4.7 | 4.79 | — | 4.7 | 0.018 | 1.67 | 0.0 | 0.11 | 19.47 | 0.01 | 2.125 | 76.17 | 14.53 | 6.4 | 87.5 | 6.1 | -1.59 | 0.66 | 0.76 | — | 4.7 | 0.003 | 0.88 | 0.0 | 0.04 | 14.41 | 0.00 | 2.094 | 16.30 | 0.00 | 9.4 | 89.8 | 0.8 | -1.91 | 1.28 | 0.64 | 0.71 | — | 14800 | 1875 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6iZR | 9757 | 2024-03-18 | 2018-12-20 | 4.7 | 4.86 | — | 4.7 | 0.004 | 0.90 | 0.0 | 0.05 | 11.50 | 0.01 | 2.086 | 6.63 | 0.26 | 6.9 | 93.1 | 0.0 | -4.07 | 0.68 | 0.78 | — | 4.7 | 0.004 | 0.84 | 0.0 | 0.05 | 13.48 | 0.00 | 1.741 | 20.97 | 0.64 | 7.4 | 92.6 | 0.0 | -0.91 | 2.02 | 0.66 | 0.71 | — | 84360 | 10470 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 7VZF | 32227 | 2024-03-10 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.45 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.004 | 0.92 | 0.0 | 0.05 | 18.65 | 0.00 | 2.097 | 12.69 | 6.03 | 18.5 | 81.5 | 0.0 | -4.26 | 1.85 | 0.37 | 0.63 | -0.15 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WL7 | 21816 | 2024-03-22 | 2020-04-18 | 3.8 | 4.18 | — | 3.9 | 0.006 | 0.58 | 0.0 | 0.04 | 14.93 | 0.00 | 2.204 | 8.50 | 0.00 | 1.2 | 98.8 | 0.0 | 3.28 | 0.79 | 0.87 | 2.36 | 3.9 | 0.005 | 0.83 | 0.0 | 0.04 | 17.52 | 0.00 | 2.175 | 13.92 | 6.51 | 0.0 | 100.0 | 0.0 | 5.90 | 1.40 | 0.79 | 0.87 | 1.96 | 34350 | 4350 | 150 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VRF | 8728 | 2024-03-10 | 2017-05-10 | 4.1 | 4.21 | — | 4.1 | 0.011 | 1.28 | 0.0 | 0.06 | 10.38 | 0.01 | 1.994 | 8.85 | 0.00 | 2.5 | 97.5 | 0.0 | -4.10 | 0.82 | 0.83 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.01 | 0.00 | 1.988 | 10.66 | 0.00 | 1.6 | 98.4 | 0.0 | 2.11 | 3.54 | 0.83 | 0.83 | — | 4378 | 564 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 7U12 | 26275 | 2024-03-10 | 2022-02-19 | 3.5 | 3.59 | — | 4.4 | 0.011 | 1.06 | 0.0 | 0.07 | 16.72 | 0.01 | 2.160 | 20.06 | 5.51 | 8.0 | 92.0 | 0.0 | -3.00 | 0.29 | 0.45 | 2.77 | 4.3 | 0.004 | 0.82 | 0.0 | 0.06 | 15.16 | 0.00 | 2.205 | 11.72 | 3.94 | 9.3 | 90.7 | 0.0 | -3.74 | 2.89 | 0.33 | 0.56 | 2.09 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 8E5G | 27912 | 2024-03-14 | 2022-08-22 | 3.9 | 4.43 | 4.33 | 4.2 | 0.006 | 1.05 | 10.0 | 0.10 | 17.24 | 0.00 | 1.918 | 47.42 | 0.00 | 9.6 | 89.9 | 0.5 | -2.33 | 0.62 | 0.75 | 0.01 | 4.2 | 0.005 | 1.04 | 0.0 | 0.04 | 18.73 | 0.00 | 1.569 | 20.26 | 4.25 | 9.5 | 90.1 | 0.4 | -2.43 | 0.76 | 0.63 | 0.76 | 0.44 | 9065 | 1100 | 5 | 0 | 20 | 0 | 0 | logfile |
✔ | 7QKH | 14042 | 2024-03-10 | 2021-12-17 | 3.17 | 3.37 | 2.07 | 3.5 | 0.011 | 2.48 | 5.0 | 0.19 | 15.22 | 0.01 | 2.470 | 1.29 | 0.00 | 14.6 | 85.4 | 0.0 | -3.56 | 0.37 | 0.74 | 3.98 | 6.0 | 0.004 | 0.99 | 0.0 | 0.22 | 15.46 | 0.00 | 2.133 | 8.39 | 1.11 | 8.3 | 91.7 | 0.0 | -2.81 | 2.23 | 0.33 | 0.71 | 4.39 | 3105 | 204 | 6 | 0 | 0 | 0 | 1593 | logfile |
✔ | 7QK1 | 14028 | 2024-03-10 | 2021-12-17 | 3.03 | 3.20 | 2.13 | 3.2 | 0.011 | 1.97 | 2.0 | 0.11 | 12.98 | 0.01 | 2.502 | 0.00 | 0.00 | 5.5 | 94.5 | 0.0 | -1.61 | 0.48 | 0.84 | 4.10 | 3.2 | 0.005 | 0.77 | 0.0 | 0.05 | 16.62 | 0.00 | 2.249 | 6.12 | 5.56 | 3.4 | 96.6 | 0.0 | -1.92 | 2.22 | 0.42 | 0.85 | 4.24 | 3444 | 450 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CU8 | 7619 | 2024-03-10 | 2018-03-23 | 3.6 | 3.65 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.06 | 7.75 | 0.00 | 2.412 | 6.41 | 0.00 | 5.1 | 94.9 | 0.0 | -2.86 | 0.45 | 0.73 | -0.16 | 4.2 | 0.005 | 0.77 | 0.0 | 0.06 | 11.70 | 0.00 | 2.139 | 16.86 | 3.55 | 14.9 | 85.1 | 0.0 | -2.95 | 1.76 | 0.42 | 0.73 | 2.19 | 2880 | 410 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oo6 | 17005 | 2024-03-10 | 2023-04-04 | 4.3 | 4.37 | 4.20 | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 20.16 | 0.00 | 2.225 | 10.88 | 0.00 | 4.2 | 95.8 | 0.0 | -0.09 | 0.88 | 0.81 | — | 4.1 | 0.003 | 0.60 | 0.0 | 0.04 | 20.10 | 0.00 | 2.228 | 10.43 | 0.00 | 5.3 | 94.7 | 0.0 | 0.25 | 1.58 | 0.89 | 0.83 | — | 5890 | 604 | 5 | 54 | 1 | 0 | 0 | logfile |
✔ | 7XJX | 33236 | 2024-03-10 | 2022-04-18 | 2.7 | 2.78 | 1.76 | 2.9 | 0.008 | 0.81 | 0.0 | 0.06 | 12.77 | 0.00 | 2.438 | 12.63 | 0.00 | 16.4 | 83.6 | 0.0 | -5.02 | 0.48 | 0.81 | 4.92 | 2.9 | 0.004 | 0.77 | 0.0 | 0.05 | 14.58 | 0.00 | 2.392 | 9.10 | 4.44 | 12.3 | 87.7 | 0.0 | -3.52 | 1.16 | 0.45 | 0.81 | 4.78 | 2628 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |