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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6o1o | 0454 | 2021-01-06 | 2019-02-21 | 3.8 | 4.00 | — | 3.6 | 0.008 | 1.55 | 0.0 | 0.07 | 15.00 | 0.01 | 2.295 | 4.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.72 | 0.70 | — | 3.6 | 0.013 | 1.79 | 0.0 | 0.07 | 14.18 | 0.00 | 1.994 | 33.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.72 | 0.76 | 0.75 | — | 15193 | 0 | 14 | 66 | 2757 | 0 | 0 | logfile |
✔ | 6oDJ | 20021 | 2021-01-06 | 2019-03-26 | 3.5 | 3.75 | — | 3.7 | 0.009 | 1.50 | 0.0 | 0.07 | 11.32 | 0.01 | 2.438 | 2.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.81 | — | 3.6 | 0.012 | 1.74 | 0.0 | 0.06 | 7.95 | 0.00 | 2.065 | 11.87 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.66 | 0.81 | 0.84 | — | 25415 | 0 | 17 | 0 | 5083 | 0 | 0 | logfile |
✔ | 6UET | 20756 | 2021-01-05 | 2019-09-23 | 4.1 | 4.91 | — | 5.1 | 0.010 | 1.58 | 0.0 | 0.07 | 17.24 | 0.02 | 1.977 | 4.64 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.62 | 0.73 | — | 5.0 | 0.007 | 0.97 | 0.0 | 0.05 | 22.88 | 0.01 | 1.754 | 51.75 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.64 | 0.78 | — | 3869 | 0 | 1 | 119 | 1 | 0 | 1291 | logfile |
✔ | 6oEF | 20020 | 2021-01-07 | 2019-03-27 | 3.8 | 3.98 | — | 3.8 | 0.007 | 1.67 | 0.0 | 0.07 | 11.76 | 0.01 | 2.376 | 3.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.47 | 0.78 | — | 3.8 | 0.006 | 1.18 | 0.0 | 0.05 | 5.88 | 0.00 | 2.195 | 7.70 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.48 | 0.79 | — | 51240 | 0 | 14 | 0 | 10248 | 0 | 0 | logfile |
✔ | 6C9i | 7436 | 2021-01-06 | 2018-01-26 | 3.09 | 3.21 | — | 3.2 | 0.029 | 1.48 | 0.0 | 0.12 | 9.22 | 0.01 | 2.417 | 0.75 | 0.00 | 0.3 | 99.6 | 0.1 | 2.36 | 0.79 | 0.85 | 4.97 | 3.2 | 0.003 | 0.43 | 0.0 | 0.04 | 13.86 | 0.00 | 2.266 | 5.92 | 0.00 | 0.0 | 100.0 | 0.0 | 3.58 | 2.43 | 0.73 | 0.88 | 3.91 | 23700 | 3087 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PoM | 20416 | 2021-01-05 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 17.29 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.28 | 0.0 | 0.06 | 21.79 | 0.01 | 1.928 | 59.11 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.80 | 0.74 | 0.80 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2021-01-05 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.00 | 0.0 | 0.05 | 23.93 | 0.01 | 1.967 | 73.15 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.27 | 0.88 | 0.77 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 6X5i | 22051 | 2021-01-05 | 2020-05-26 | 4.3 | 4.27 | — | 4.0 | 0.061 | 3.17 | 210.0 | 0.20 | 28.86 | 0.00 | 2.206 | 29.57 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.70 | — | 4.0 | 0.010 | 1.57 | 210.0 | 0.14 | 27.11 | 0.00 | 1.555 | 68.00 | 0.00 | 0.0 | 0.0 | 0.0 | — | 4.23 | 0.68 | 0.74 | — | 4480 | 70 | 70 | 0 | 280 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2021-01-05 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.77 | — | 3.3 | 0.007 | 0.89 | 0.0 | 0.04 | 21.25 | 0.01 | 1.834 | 37.21 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.33 | 0.87 | 0.82 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 6oEH | 20020 | 2021-01-07 | 2019-03-27 | 3.8 | 3.93 | — | 3.7 | 0.010 | 1.38 | 0.0 | 0.07 | 11.62 | 0.01 | 2.381 | 2.81 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.77 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.04 | 5.10 | 0.00 | 2.207 | 12.93 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.37 | 0.76 | — | 32900 | 0 | 14 | 0 | 6580 | 0 | 0 | logfile |
✔ | 5X1G | 6701 | 2021-01-05 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | 0.002 | 0.62 | 0.0 | 0.03 | 3.04 | 0.00 | 2.649 | 0.00 | 0.00 | 0.0 | 100.0 | 0.0 | 4.51 | 3.37 | 0.01 | 0.14 | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2021-01-06 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.52 | 0.0 | 0.41 | 5.92 | 0.00 | 2.134 | 43.68 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.30 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 6QYZ | 4680 | 2021-01-05 | 2019-03-10 | 4.6 | 2.98 | — | 6.0 | 0.009 | 1.14 | 0.0 | 0.04 | 24.59 | 0.01 | 1.934 | 53.60 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.53 | — | 2.9 | 0.006 | 1.16 | 0.0 | 0.07 | 28.21 | 0.01 | 2.052 | 71.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 4.55 | 0.73 | 0.67 | — | 7300 | 0 | 5 | 345 | 0 | 0 | 0 | logfile |
✔ | 6LHW | 0901 | 2021-01-05 | 2019-12-10 | 4.84 | 5.29 | — | 4.6 | 0.008 | 1.37 | 1.0 | 0.05 | 5.28 | 0.00 | 1.530 | 14.43 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.64 | 0.56 | — | 4.7 | 0.007 | 1.25 | 0.0 | 0.04 | 6.28 | 0.00 | 2.051 | 40.84 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.27 | 0.83 | 0.79 | — | 7644 | 0 | 3 | 0 | 1541 | 0 | 0 | logfile |
✔ | 6LHV | 0900 | 2021-01-05 | 2019-12-10 | 4.59 | 4.86 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 5.37 | 0.00 | 1.654 | 9.63 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.60 | — | 4.4 | 0.009 | 1.32 | 0.0 | 0.04 | 6.42 | 0.00 | 2.069 | 50.52 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.59 | 0.85 | 0.81 | — | 8456 | 0 | 3 | 0 | 1707 | 0 | 0 | logfile |
✔ | 6TUQ | 10594 | 2021-01-06 | 2020-01-08 | 3.9 | 4.52 | — | 4.0 | 0.009 | 1.01 | 0.0 | 0.05 | 11.22 | 0.00 | 2.191 | 8.45 | 3.12 | 0.0 | 100.0 | 0.0 | -6.69 | 0.68 | 0.88 | 0.54 | 4.0 | 0.002 | 0.67 | 0.0 | 0.04 | 9.98 | 0.00 | 2.231 | 9.62 | 0.00 | 0.1 | 99.9 | 0.0 | -0.60 | 1.69 | 0.68 | 0.86 | 0.85 | 16100 | 2300 | 50 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RVV | 4443 | 2021-01-07 | 2019-06-03 | 3.7 | 3.95 | — | 3.9 | 0.006 | 0.60 | 0.0 | 0.05 | 13.27 | 0.00 | 2.245 | 2.48 | 0.00 | 2.0 | 98.0 | 0.0 | -2.44 | 0.78 | 0.82 | 2.75 | 3.9 | 0.003 | 0.56 | 0.0 | 0.05 | 14.76 | 0.00 | 2.124 | 9.29 | 0.04 | 0.2 | 99.8 | 0.0 | -0.78 | 1.00 | 0.79 | 0.82 | 3.51 | 110208 | 14520 | 384 | 0 | 120 | 0 | 0 | logfile |
✔ | 6L3U | 0826 | 2021-01-06 | 2019-10-15 | 2.53 | 2.59 | 2.48 | 2.6 | 0.012 | 0.95 | 0.0 | 0.05 | 17.90 | 0.01 | 2.206 | 0.45 | 3.01 | 1.9 | 98.1 | 0.0 | -2.86 | 0.64 | 0.84 | 4.02 | 2.6 | 0.002 | 0.57 | 0.0 | 0.03 | 14.20 | 0.00 | 1.963 | 3.59 | 0.00 | 0.2 | 99.8 | 0.0 | 2.40 | 0.99 | 0.63 | 0.83 | 3.42 | 19698 | 1206 | 18 | 0 | 12 | 174 | 9588 | logfile |
✔ | 6SD1 | 10145 | 2021-01-07 | 2019-07-26 | 2.6 | 2.74 | 2.55 | 2.7 | 0.003 | 0.53 | 0.0 | 0.04 | 12.42 | 0.00 | 2.149 | 8.44 | 0.00 | 4.3 | 95.7 | 0.0 | -2.90 | 0.74 | 0.84 | 4.92 | 2.7 | 0.004 | 0.56 | 0.0 | 0.04 | 13.44 | 0.00 | 2.152 | 9.17 | 0.00 | 0.3 | 99.7 | 0.0 | 1.92 | 0.64 | 0.76 | 0.84 | 4.65 | 39369 | 4983 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 6A7F | 6993 | 2021-01-05 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 14.19 | 0.00 | 2.274 | 12.37 | 0.00 | 0.3 | 99.7 | 0.0 | 2.53 | 2.06 | 0.59 | 0.85 | -0.22 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |