Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QJH	4563	2022-11-29	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.31	0.78	2.85	1302	177	3	0	0	0	0	logfile
✔	6TGN	10499	2022-11-29	2019-11-17	3.9	3.83	—	4.0	0.010	1.73	0.0	0.12	11.93	0.01	2.161	5.17	1.39	4.7	95.3	0.0	-3.57	0.54	0.90	1.73	4.0	0.004	0.93	0.0	0.04	15.61	0.00	2.436	12.55	0.00	2.3	97.7	0.0	0.20	1.16	0.53	0.82	1.30	672	88	1	0	0	0	0	logfile
✔	7KJR	22898	2022-11-29	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	16.31	0.00	2.254	8.14	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	16.17	0.00	2.108	10.44	0.74	2.3	97.7	0.0	1.38	0.39	0.63	0.85	4.62	3840	448	8	0	2	122	0	logfile
✔	6XQo	22291	2022-11-29	2020-07-09	3.1	3.54	—	3.5	0.004	0.57	0.0	0.04	15.61	0.00	1.956	9.56	3.52	4.4	95.6	0.0	-2.83	0.76	0.75	2.70	3.5	0.003	0.65	0.0	0.04	16.71	0.00	2.150	11.62	0.00	2.4	97.6	0.0	0.53	1.26	0.78	0.78	1.41	4301	560	4	0	4	0	0	logfile
✔	7QEo	13935	2022-11-29	2021-12-03	2.9	3.47	—	3.1	0.008	0.69	0.0	0.04	13.62	0.00	2.106	5.39	0.00	3.9	96.1	0.0	0.61	0.78	0.88	3.13	3.1	0.003	0.63	0.0	0.04	15.41	0.00	2.184	6.36	0.91	2.5	97.5	0.0	2.81	0.47	0.78	0.88	2.74	3056	368	6	0	6	4	0	logfile
✔	6X12	21986	2022-11-29	2020-05-18	3.52	3.69	—	3.7	0.008	1.08	0.0	0.06	15.87	0.01	2.322	3.01	0.00	2.7	97.3	0.0	-5.29	0.65	0.84	1.43	3.7	0.003	0.65	0.0	0.04	15.91	0.00	2.249	7.77	0.63	2.5	97.5	0.0	0.23	1.19	0.67	0.84	1.33	3059	407	1	0	1	0	0	logfile
✔	7RTV	24690	2022-11-29	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.04	18.39	0.00	2.192	15.77	0.00	2.5	97.5	0.0	3.10	0.49	0.42	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	7QKG	14041	2022-11-29	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.60	0.0	0.05	13.51	0.00	2.262	5.27	0.00	2.6	97.4	0.0	-1.55	1.17	0.36	0.83	4.87	2469	162	3	0	0	0	1278	logfile
✔	7RSQ	24677	2022-11-29	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.51	0.0	0.03	15.35	0.00	2.389	2.76	0.00	2.6	97.4	0.0	2.59	1.83	0.63	0.70	1.77	3970	246	1	0	0	0	1958	logfile
✔	8CSV	26972	2022-11-29	2022-05-13	2.7	2.53	2.72	2.6	0.002	0.47	0.0	0.04	11.85	0.00	2.246	3.83	1.03	2.7	97.1	0.2	0.82	0.53	0.85	5.33	2.6	0.003	0.52	0.0	0.04	15.83	0.00	2.176	6.42	0.26	2.7	97.1	0.2	2.09	0.60	0.58	0.88	4.74	3712	483	3	0	0	48	0	logfile
✔	7QKL	14046	2022-11-29	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.71	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.005	0.71	0.0	0.05	17.30	0.00	2.476	5.23	0.25	2.7	97.3	0.0	-1.26	2.03	0.45	0.91	8.23	3468	456	6	0	0	0	0	logfile
✔	6SKi	10225	2022-11-29	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.003	0.59	0.0	0.04	16.68	0.00	2.245	7.39	1.51	2.7	97.3	0.0	0.77	0.50	0.62	0.83	4.32	4434	569	2	0	0	0	0	logfile
✔	7KNT	22962	2022-11-29	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.65	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.7	0.003	0.71	0.0	0.04	16.05	0.00	2.229	12.73	0.25	2.7	97.3	0.0	0.57	0.49	0.57	0.75	0.28	3716	455	2	0	0	0	0	logfile
✔	7QK2	14029	2022-11-29	2021-12-17	2.61	2.61	2.37	2.7	0.011	1.86	10.0	0.11	10.81	0.01	2.499	0.76	0.00	4.1	95.9	0.0	-1.51	0.37	0.86	6.04	2.7	0.003	0.65	0.0	0.05	17.08	0.00	2.113	4.99	2.96	2.7	97.3	0.0	-1.83	1.72	0.37	0.87	5.30	3246	426	6	0	0	0	0	logfile
✔	6WYK	21967	2022-11-29	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.004	0.82	0.0	0.04	16.48	0.00	2.158	11.62	0.31	2.7	97.3	0.0	1.72	0.84	0.62	0.78	—	3083	415	1	0	0	0	0	logfile
✔	6QPi	4614	2022-11-29	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	7SoA	25264	2022-11-29	2021-10-29	3.1	3.33	3.14	3.3	0.010	1.26	0.0	0.08	10.28	0.01	2.194	1.20	0.24	2.0	98.0	0.0	0.99	0.68	0.84	4.69	3.3	0.004	0.59	0.0	0.04	13.33	0.00	2.221	4.12	0.73	2.8	97.2	0.0	0.92	0.57	0.68	0.90	4.89	3850	477	5	0	6	0	0	logfile
✔	7MJi	23874	2022-11-29	2021-04-20	2.81	3.32	—	3.2	0.006	0.80	0.0	0.05	12.43	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.004	0.58	0.0	0.04	15.25	0.00	2.300	7.73	1.10	2.8	97.2	0.0	-0.01	1.44	0.56	0.85	4.21	2522	320	3	0	1	0	0	logfile
✔	7K9K	22751	2022-11-29	2020-09-29	3.14	3.44	3.39	3.5	0.006	0.93	0.0	0.06	13.39	0.01	2.188	11.03	0.00	3.8	96.2	0.0	-1.35	0.46	0.77	2.35	3.5	0.004	0.68	0.0	0.04	15.44	0.00	2.201	10.08	0.29	2.8	97.2	0.0	-1.04	0.44	0.46	0.79	2.00	3202	402	4	0	4	0	0	logfile
✔	7N8i	24237	2022-11-29	2021-06-14	3.0	3.22	3.02	3.2	0.011	1.22	0.0	0.07	10.84	0.01	2.309	0.85	0.26	1.6	98.4	0.0	1.04	0.75	0.87	5.46	3.2	0.008	0.71	0.0	0.05	14.99	0.00	2.096	5.10	1.29	2.8	97.2	0.0	1.02	1.00	0.75	0.91	5.65	3600	445	3	0	5	0	0	logfile

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