Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XD5	33136	2023-08-10	2022-03-26	2.84	3.32	2.81	3.1	0.003	0.58	0.0	0.03	13.91	0.00	1.864	0.61	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.004	0.64	0.0	0.04	15.36	0.00	1.949	6.26	0.00	0.0	0.0	0.0	—	1.38	0.89	0.90	—	8714	0	3	406	30	0	0	logfile
✔	7PTL	13630	2023-08-17	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	16.11	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.90	0.0	0.04	21.29	0.01	1.737	86.57	0.00	0.0	0.0	0.0	—	3.52	0.91	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	7XSL	33426	2023-08-12	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	16.20	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.006	0.70	0.0	0.04	18.31	0.01	1.810	33.53	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7YCG	33738	2023-08-10	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	14.85	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.66	0.0	0.04	15.89	0.00	1.846	33.51	0.00	0.0	0.0	0.0	—	0.32	0.95	0.89	—	8661	0	2	404	4	0	0	logfile
✔	7XD6	33137	2023-08-11	2022-03-26	2.84	3.25	2.83	3.0	0.005	0.74	0.0	0.04	15.28	0.00	1.975	1.30	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.0	0.005	0.66	0.0	0.04	16.14	0.00	1.883	7.41	0.00	0.0	0.0	0.0	—	1.32	0.88	0.89	—	9843	0	3	459	29	0	0	logfile
✔	6oEH	20020	2023-08-22	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.7	0.007	1.05	0.0	0.04	5.09	0.00	2.203	12.28	0.00	0.0	0.0	0.0	—	0.52	0.40	0.80	—	32900	0	14	0	6580	0	0	logfile
✔	7YGD	33816	2023-08-10	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	15.33	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.75	0.0	0.04	17.38	0.01	1.823	32.82	0.00	0.0	0.0	0.0	—	1.50	0.91	0.89	—	8313	0	3	389	6	0	0	logfile
✔	7UVT	26816	2023-08-12	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	7XSK	33425	2023-08-12	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.68	0.0	0.04	18.66	0.01	1.750	33.29	0.00	0.0	0.0	0.0	—	1.90	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7YGB	33814	2023-08-10	2022-07-11	2.62	3.15	2.70	2.9	0.007	0.52	0.0	0.03	14.46	0.00	2.079	13.50	0.00	0.0	0.0	0.0	—	0.88	0.84	—	2.9	0.007	0.63	0.0	0.04	14.92	0.00	1.835	13.73	0.00	0.0	0.0	0.0	—	0.87	0.90	0.91	—	8738	0	5	407	54	0	0	logfile
✔	6WL1	21815	2023-08-13	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.004	0.51	0.0	0.04	16.18	0.00	2.241	6.67	0.67	0.0	100.0	0.0	6.23	0.72	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	7XSM	33427	2023-08-12	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.76	0.0	0.04	19.93	0.01	1.773	49.65	0.00	0.0	0.0	0.0	—	1.70	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7URi	26713	2023-08-09	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	6oEF	20020	2023-08-27	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.21	0.0	0.05	6.00	0.00	2.197	8.15	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	7XD7	33138	2023-08-10	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	14.03	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.66	0.0	0.04	15.12	0.00	1.878	8.19	0.00	0.0	0.0	0.0	—	2.01	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	7EZ2	31386	2023-08-10	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.92	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	3.0	0.008	0.86	0.0	0.05	15.75	0.01	1.755	7.20	0.00	0.0	0.0	0.0	—	1.04	0.73	0.89	—	8698	0	3	406	31	0	0	logfile
✔	7YGA	33813	2023-08-10	2022-07-11	2.35	3.08	2.44	2.8	0.008	0.62	0.0	0.04	15.23	0.01	1.779	10.87	0.00	0.0	0.0	0.0	—	0.89	0.87	—	2.8	0.007	0.60	0.0	0.04	15.25	0.00	1.826	12.63	0.00	0.0	0.0	0.0	—	0.16	0.89	0.88	—	8692	0	3	407	8	0	0	logfile
✔	7XD3	33134	2023-08-11	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	16.04	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.80	0.0	0.04	17.14	0.01	1.675	17.13	0.00	0.0	0.0	0.0	—	1.77	0.87	0.81	—	9062	0	1	423	28	0	0	logfile
✔	6X5i	22051	2023-08-10	2020-05-26	4.3	4.27	—	4.0	0.060	2.79	0.0	0.16	29.93	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.011	1.53	0.0	0.13	24.62	0.00	1.571	57.36	0.00	0.0	0.0	0.0	—	3.30	0.69	0.74	—	4480	70	70	0	280	0	0	logfile
✔	6UES	20755	2023-08-09	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.14	0.01	1.785	36.43	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile

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