Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P5M	13201	2022-04-04	2021-07-14	3.92	3.54	3.67	3.7	0.003	0.55	0.0	0.04	14.29	0.00	2.209	8.88	0.00	0.9	99.1	0.0	3.52	0.51	0.77	1.01	3.7	0.016	1.49	1.0	0.04	17.09	0.01	1.835	13.48	0.46	0.9	99.1	0.0	3.87	0.43	0.52	0.77	0.92	6204	788	8	0	12	0	0	logfile
✔	6RVV	4443	2022-04-04	2019-06-03	3.7	3.95	—	3.9	0.006	0.60	0.0	0.05	13.27	0.00	2.245	2.48	0.00	2.0	98.0	0.0	-2.44	0.78	0.82	2.75	3.9	0.006	0.71	0.0	0.05	18.10	0.00	2.008	12.10	1.24	0.9	99.1	0.0	-1.15	1.07	0.79	0.83	2.99	110208	14520	384	0	120	0	0	logfile
✔	7JSV	22460	2022-04-06	2020-08-16	3.9	3.98	—	4.0	0.019	1.51	0.0	0.10	10.55	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.004	0.79	0.0	0.04	15.94	0.00	2.147	11.99	0.42	0.9	99.1	0.0	-0.29	0.91	0.64	0.83	2.56	22140	2706	82	0	41	0	0	logfile
✔	7D0i	30535	2022-04-06	2020-09-10	3.0	2.89	2.95	3.1	0.008	0.78	0.0	0.05	14.12	0.00	2.237	5.55	2.60	2.6	97.4	0.0	-2.14	0.69	0.81	2.98	3.1	0.011	1.05	2.0	0.04	16.56	0.00	1.747	8.00	2.21	0.9	99.1	0.0	1.61	1.40	0.69	0.83	2.70	22164	2544	12	0	12	0	0	logfile
✔	7o0V	12680	2022-04-04	2021-03-27	2.5	2.50	—	2.4	0.017	4.36	0.0	0.05	21.56	0.01	2.117	1.77	0.31	1.2	98.8	0.0	1.63	0.82	0.86	5.41	2.4	0.006	1.83	0.0	0.04	21.22	0.01	2.031	7.64	1.31	0.9	99.1	0.0	3.43	0.49	0.83	0.88	4.33	55475	4947	238	0	317	489	0	logfile
✔	6ZBJ	11156	2022-04-09	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.7	0.002	0.49	0.0	0.03	15.22	0.00	2.046	3.44	0.00	0.9	99.1	0.0	3.86	1.30	0.87	0.82	1.19	39212	2334	4	0	0	0	19864	logfile
✔	7NK9	12434	2022-04-06	2021-02-17	2.9	3.29	—	3.2	0.003	0.50	0.0	0.04	13.03	0.00	2.087	6.80	0.00	2.9	97.1	0.0	1.61	0.68	0.86	1.78	3.2	0.004	0.56	0.0	0.04	15.15	0.00	2.114	6.42	0.81	1.0	99.0	0.0	4.02	0.43	0.68	0.87	1.42	18081	1225	14	0	0	0	9158	logfile
✔	7o0U	12679	2022-04-04	2021-03-27	2.35	2.42	—	2.3	0.017	4.34	0.0	0.05	21.53	0.01	2.121	1.71	0.41	1.2	98.8	0.0	1.39	0.83	0.86	5.52	2.2	0.005	1.79	0.0	0.04	20.74	0.00	1.778	7.26	1.43	1.0	99.0	0.0	3.66	1.11	0.84	0.88	4.33	55758	4972	236	0	320	491	0	logfile
✔	6ZBL	11157	2022-04-09	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.003	0.47	0.0	0.03	15.53	0.00	2.015	2.99	0.00	1.0	99.0	0.0	4.19	1.34	0.88	0.82	0.89	39074	2326	4	0	0	0	19788	logfile
✔	7MQF	23945	2022-04-06	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.44	0.00	2.256	2.39	0.00	1.0	99.0	0.0	1.02	0.44	0.80	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	7oFH	12874	2022-04-07	2021-05-05	2.7	2.70	—	2.7	0.010	1.60	31.0	0.11	16.73	0.01	2.236	13.88	3.90	12.3	87.6	0.1	-4.46	0.71	0.83	1.69	2.7	0.003	0.65	0.0	0.05	17.73	0.00	2.179	4.78	2.93	1.0	99.0	0.0	-0.17	1.34	0.75	0.85	2.30	27135	3465	30	0	30	0	0	logfile
✔	7o0W	12681	2022-04-04	2021-03-27	2.47	2.42	—	2.3	0.017	4.33	0.0	0.05	21.50	0.01	2.010	1.97	0.28	1.4	98.6	0.0	1.25	0.82	0.86	5.37	2.3	0.003	1.71	0.0	0.04	20.80	0.00	1.922	7.40	1.28	1.0	99.0	0.0	3.83	1.12	0.82	0.87	4.03	56476	5076	236	0	320	406	0	logfile
✔	7QL0	14059	2022-04-04	2021-12-19	3.13	2.96	2.97	3.1	0.011	1.87	0.0	0.09	12.06	0.01	2.510	0.00	0.00	4.0	96.0	0.0	-2.04	0.39	0.77	6.02	3.2	0.003	0.59	0.0	0.05	14.24	0.00	2.080	5.95	0.00	1.0	99.0	0.0	-1.71	1.66	0.42	0.84	5.81	6390	414	6	0	0	0	3258	logfile
✔	7BYM	30245	2022-04-05	2020-04-23	3.1	3.49	—	3.6	0.009	1.26	0.0	0.05	18.86	0.01	1.997	23.20	8.67	1.4	98.4	0.2	-0.33	0.46	0.48	1.34	3.5	0.003	0.61	0.0	0.03	17.05	0.00	2.168	9.87	0.24	1.1	98.8	0.1	2.58	0.92	0.55	0.74	1.47	16411	2000	16	0	11	4	0	logfile
✔	7o0X	12682	2022-04-04	2021-03-28	2.44	2.39	—	2.3	0.017	4.32	0.0	0.05	21.28	0.01	2.099	1.63	0.23	1.4	98.6	0.0	1.33	0.82	0.86	5.55	2.3	0.005	1.81	0.0	0.04	20.95	0.00	2.064	6.87	1.05	1.1	98.9	0.0	3.69	0.48	0.82	0.87	4.38	56446	5072	237	0	316	521	0	logfile
✔	7B03	11955	2022-04-04	2020-11-18	2.93	2.97	—	2.9	0.005	0.90	0.0	0.04	13.62	0.00	2.190	7.91	0.00	1.9	98.1	0.0	1.34	0.69	0.81	1.85	2.9	0.002	0.47	0.0	0.04	16.37	0.00	2.129	8.54	2.03	1.1	98.9	0.0	2.05	0.41	0.67	0.82	1.42	8670	1085	10	0	5	0	0	logfile
✔	6L3T	0825	2022-04-06	2019-10-15	2.34	2.41	2.27	2.4	0.012	1.03	0.0	0.05	16.76	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.003	0.60	0.0	0.03	16.29	0.00	1.929	2.44	1.41	1.1	98.9	0.0	2.69	1.60	0.69	0.87	4.48	19722	1206	18	0	6	204	9588	logfile
✔	7PLT	13501	2022-04-05	2021-09-01	3.3	3.94	3.24	3.4	0.014	1.15	2.0	0.07	14.57	0.01	1.312	4.11	0.00	0.2	99.8	0.0	-1.61	0.92	0.87	3.10	3.5	0.003	0.68	1.0	0.04	15.28	0.00	2.010	7.53	0.09	1.1	98.9	0.0	1.64	0.63	0.91	0.88	2.19	10148	1264	5	0	3	0	0	logfile
✔	7MQD	23943	2022-04-06	2021-05-05	3.25	3.21	3.21	3.3	0.003	0.62	0.0	0.05	13.35	0.00	2.456	1.98	0.00	1.0	99.0	0.0	1.04	0.75	0.83	3.89	3.3	0.003	0.49	0.0	0.04	14.25	0.00	2.268	3.97	0.00	1.1	98.9	0.0	1.76	1.29	0.78	0.87	4.30	11960	1592	16	16	0	0	0	logfile
✔	7DSE	30832	2022-04-05	2020-12-30	3.2	4.06	—	3.8	0.005	0.61	0.0	0.04	12.28	0.00	2.295	16.79	0.00	2.7	97.3	0.0	-0.37	0.60	0.80	1.39	3.8	0.004	0.74	0.0	0.04	16.40	0.01	2.209	14.18	0.22	1.1	98.9	0.0	2.46	1.56	0.62	0.83	2.09	13006	1631	14	0	7	0	0	logfile

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