Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QJP	4565	2021-09-02	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.72	0.0	0.05	12.84	0.00	2.423	11.00	0.00	1.1	98.9	0.0	-3.26	1.60	0.33	0.73	4.12	816	105	3	0	0	0	0	logfile
✔	6LMW	0922	2021-09-03	2019-12-26	3.4	3.55	3.21	3.5	0.007	0.91	0.0	0.05	15.33	0.01	2.292	2.21	0.63	1.6	98.4	0.0	-5.34	0.53	0.73	3.03	3.5	0.003	0.64	0.0	0.04	16.36	0.00	2.196	5.02	0.39	1.1	98.9	0.0	2.31	0.47	0.69	0.84	2.39	11624	1472	8	0	0	0	0	logfile
✔	7D4Q	30576	2021-09-04	2020-09-24	2.74	2.99	2.80	3.0	0.016	1.49	0.0	0.17	13.65	0.01	2.254	6.25	0.67	1.4	98.6	0.0	2.70	0.47	0.71	3.84	3.0	0.003	0.60	0.0	0.04	15.87	0.00	2.219	6.43	1.30	1.1	98.9	0.0	2.29	0.48	0.69	0.87	3.81	22388	2672	8	0	24	0	0	logfile
✔	6ZBL	11157	2021-09-06	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.002	0.47	0.0	0.03	15.52	0.00	1.997	3.86	0.09	1.1	98.9	0.0	4.53	1.37	0.88	0.82	0.85	39074	2326	4	0	0	0	19788	logfile
✔	7JM9	22390	2021-09-06	2020-07-31	2.5	2.71	2.65	2.7	0.007	0.82	0.0	0.07	14.06	0.00	2.291	3.08	0.56	1.1	98.9	0.0	0.10	0.62	0.82	5.25	2.6	0.002	0.49	0.0	0.04	14.15	0.00	2.095	9.49	1.51	1.1	98.9	0.0	3.91	0.74	0.63	0.84	4.53	41136	2328	36	0	168	156	18876	logfile
✔	6RAH	4775	2021-09-03	2019-04-06	2.8	2.99	3.01	2.9	0.008	1.53	9.0	0.09	9.90	0.01	2.022	9.87	0.00	2.1	97.7	0.2	-2.51	0.72	0.81	2.84	2.9	0.003	0.62	0.0	0.04	15.69	0.01	1.983	6.18	1.63	1.1	98.9	0.0	1.95	1.33	0.76	0.85	2.02	10161	1277	7	0	4	4	0	logfile
✔	6ZBC	11150	2021-09-04	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	0.97	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.48	0.0	0.03	15.15	0.00	2.042	4.10	0.00	1.1	98.9	0.0	4.73	0.89	0.86	0.82	1.38	19534	1160	4	0	0	0	9902	logfile
✔	7E4T	30987	2021-09-04	2021-02-15	3.0	3.26	3.08	3.3	0.016	1.23	0.0	0.17	15.80	0.00	2.278	6.50	1.01	1.1	98.9	0.0	0.77	0.50	0.68	3.26	3.3	0.003	0.53	0.0	0.04	17.38	0.00	2.179	8.12	3.42	1.1	98.9	0.0	2.32	1.25	0.71	0.84	3.32	22276	2656	8	0	24	0	0	logfile
✔	6XLK	22246	2021-09-02	2020-06-28	3.3	3.63	—	3.5	0.033	0.78	0.0	0.10	20.13	0.00	2.216	5.71	0.41	0.9	99.1	0.0	-2.26	0.78	0.84	2.91	3.5	0.004	0.63	0.0	0.04	20.59	0.00	1.958	10.96	0.00	1.1	98.9	0.0	-1.27	0.34	0.79	0.86	2.69	5456	536	6	46	4	0	0	logfile
✔	6ZBE	11152	2021-09-04	2020-06-08	3.3	4.04	3.36	3.7	0.010	1.16	0.0	0.08	13.39	0.01	2.470	1.08	0.00	0.8	99.2	0.0	0.61	0.84	0.76	1.69	3.7	0.002	0.49	0.0	0.03	15.37	0.00	2.053	5.02	0.18	1.1	98.9	0.0	4.31	1.88	0.86	0.80	1.08	19534	1160	4	0	0	0	9902	logfile
✔	6S61	10101	2021-09-04	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.30	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.004	0.63	0.0	0.04	14.73	0.00	1.766	5.08	0.65	1.2	98.8	0.0	4.22	0.74	0.78	0.88	8.81	71060	4128	72	0	30	3854	32904	logfile
✔	6MRU	9213	2021-09-03	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.48	0.0	0.03	13.33	0.00	2.202	3.21	0.06	1.2	98.8	0.0	5.39	3.90	0.76	0.86	1.88	29107	3705	13	0	0	0	0	logfile
✔	7K3V	22657	2021-09-06	2020-09-14	1.34	1.44	—	1.4	0.005	0.80	0.0	0.04	14.68	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.79	0.0	0.04	14.91	0.01	1.992	2.40	0.61	1.2	98.8	0.0	3.81	0.33	0.72	0.82	8.91	38406	4128	72	0	334	2672	0	logfile
✔	6NUT	0522	2021-09-13	2019-02-01	3.1	3.21	3.12	3.2	0.016	1.35	0.0	0.08	12.09	0.01	1.275	3.59	0.32	0.8	99.2	0.0	-0.03	0.51	0.63	1.07	3.2	0.003	0.56	0.0	0.04	17.05	0.00	2.091	7.29	0.20	1.2	98.8	0.0	1.87	3.66	0.62	0.84	2.63	156150	18950	100	300	0	0	0	logfile
✔	6RVW	4444	2021-09-03	2019-06-03	3.7	3.98	—	3.9	0.008	0.66	0.0	0.05	14.12	0.00	2.263	1.75	0.00	2.0	98.0	0.0	-2.37	0.79	0.82	2.87	4.0	0.005	0.69	0.0	0.05	18.16	0.00	2.099	11.58	1.14	1.2	98.8	0.0	-1.16	2.68	0.80	0.84	3.18	110208	14520	384	0	120	0	0	logfile
✔	6TGN	10499	2021-09-02	2019-11-17	3.9	3.83	—	4.0	0.010	1.73	0.0	0.12	11.93	0.01	2.161	5.17	1.39	4.7	95.3	0.0	-3.57	0.54	0.90	1.73	4.0	0.004	0.95	0.0	0.04	16.18	0.00	2.278	12.55	1.39	1.2	98.8	0.0	0.39	1.21	0.53	0.82	0.82	672	88	1	0	0	0	0	logfile
✔	7P0Z	13153	2021-09-03	2021-07-01	2.43	2.02	2.18	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.21	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.47	0.0	0.03	18.25	0.00	2.223	4.02	1.34	1.2	98.8	0.0	5.81	0.57	0.82	0.86	1.74	12873	1652	7	0	0	0	0	logfile
✔	6ZBG	11154	2021-09-04	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.49	0.0	0.03	15.31	0.00	2.007	4.86	0.18	1.2	98.8	0.0	4.21	1.89	0.86	0.81	1.46	19534	1160	4	0	0	0	9902	logfile
✔	6ZHX	11220	2021-09-04	2020-06-24	2.5	3.01	2.42	2.8	0.015	2.04	3.0	0.10	27.67	0.03	2.560	0.14	0.00	1.2	98.8	0.0	-0.83	0.80	0.81	5.74	2.7	0.006	0.62	0.0	0.04	28.61	0.00	2.157	1.81	0.48	1.2	98.8	0.0	2.73	1.06	0.87	0.89	4.62	21561	759	12	290	0	0	9607	logfile
✔	6TZ5	20589	2021-09-06	2019-08-10	3.1	3.56	3.05	3.7	0.003	0.51	0.0	0.04	14.11	0.00	2.220	7.23	0.00	1.1	98.9	0.0	0.24	0.40	0.55	-0.21	3.4	0.004	0.76	0.0	0.04	18.76	0.01	2.079	12.98	0.77	1.2	98.8	0.0	3.59	2.47	0.50	0.84	0.76	93500	12104	68	0	0	0	0	logfile

• ← previous
• Page 4 of 279
• next →