Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F53	28859	2023-07-20	2022-11-11	2.93	3.13	2.94	3.1	0.002	0.43	0.0	0.03	11.82	0.00	2.361	1.10	0.00	0.6	99.4	0.0	1.20	0.69	0.77	2.64	3.1	0.004	0.52	0.0	0.03	16.73	0.00	2.207	5.29	4.09	0.3	99.7	0.0	2.97	1.13	0.61	0.81	2.46	51060	3240	60	0	0	0	26460	logfile
✔	7N0L	24108	2023-07-03	2021-05-25	2.8	2.17	—	3.1	0.065	1.95	0.0	0.04	21.58	0.00	1.675	18.13	9.23	2.0	98.0	0.0	-6.10	0.56	0.80	3.16	3.1	0.002	0.66	0.0	0.04	19.76	0.00	2.190	15.04	5.90	0.3	99.7	0.0	1.88	1.26	0.56	0.81	2.04	5270	626	4	0	2	0	0	logfile
✔	8FA1	28947	2023-07-03	2022-11-25	2.51	2.37	2.87	2.7	0.006	0.57	0.0	0.04	15.92	0.00	2.286	8.14	0.00	4.6	95.4	0.0	0.73	0.77	0.80	1.71	2.7	0.003	0.49	0.0	0.04	16.30	0.00	2.354	8.14	1.68	0.3	99.7	0.0	4.83	0.85	0.77	0.79	1.59	2553	339	6	0	0	0	0	logfile
✔	7T2E	25611	2023-07-03	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	6VSA	21373	2023-07-05	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	13.16	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.6	0.004	0.59	0.0	0.04	17.37	0.00	2.166	11.48	1.74	0.4	99.5	0.1	1.16	1.15	0.93	0.90	4.49	9712	1175	10	0	0	42	0	logfile
✔	6RVV	4443	2023-07-05	2019-06-03	3.7	3.95	—	3.9	0.006	0.60	0.0	0.05	13.27	0.00	2.245	2.48	0.00	2.0	98.0	0.0	-2.44	0.78	0.82	2.75	3.9	0.005	0.67	0.0	0.05	18.05	0.00	2.039	11.35	1.28	0.4	99.6	0.0	-0.79	1.07	0.79	0.83	2.94	110208	14520	384	0	120	0	0	logfile
✔	7CG7	30351	2023-07-18	2020-06-30	3.61	3.98	—	3.9	0.005	0.66	0.0	0.04	12.61	0.00	2.027	9.40	2.26	5.6	94.4	0.0	-2.97	0.77	0.82	1.47	3.9	0.004	0.63	0.0	0.04	15.62	0.00	2.121	12.02	0.31	0.4	99.6	0.0	0.17	1.50	0.77	0.81	1.80	40290	5100	34	0	0	0	0	logfile
✔	7VZ4	32220	2023-07-06	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	29.00	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.004	0.66	0.0	0.04	28.48	0.00	2.304	4.22	0.49	0.5	99.5	0.0	2.82	0.80	0.78	0.86	7.64	11843	746	10	290	0	0	0	logfile
✔	6XZC	10658	2023-07-06	2020-02-03	3.37	3.56	3.37	3.6	0.004	0.63	0.0	0.04	12.50	0.01	2.323	2.10	3.06	1.7	98.3	0.0	-1.92	0.66	0.74	0.86	3.6	0.002	0.54	0.0	0.03	15.13	0.00	2.208	5.54	0.22	0.5	99.5	0.0	5.22	1.10	0.72	0.84	0.90	13279	1694	7	0	0	0	0	logfile
✔	7XoS	33358	2023-07-03	2022-05-01	3.2	3.54	3.05	3.3	0.003	0.58	0.0	0.04	13.12	0.00	2.109	10.85	0.00	1.5	98.5	0.0	1.37	0.54	0.84	2.95	3.3	0.003	0.65	0.0	0.04	15.29	0.00	2.128	14.05	0.50	0.6	99.4	0.0	1.72	0.44	0.56	0.86	2.19	3855	524	1	0	0	0	0	logfile
✔	7KoG	22975	2023-07-08	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.26	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	4.1	0.003	0.78	0.0	0.04	16.94	0.00	2.101	12.44	0.00	0.6	99.4	0.0	2.86	1.99	0.74	0.74	—	17384	2154	2	0	0	0	0	logfile
✔	7YQD	34024	2023-07-05	2022-08-06	3.4	3.67	3.38	3.7	0.012	1.46	7.0	0.10	13.65	0.00	2.335	4.80	7.63	0.5	99.5	0.0	6.20	0.79	0.85	0.96	3.7	0.003	0.59	0.0	0.04	16.42	0.00	2.244	8.14	1.51	0.6	99.4	0.0	4.52	0.70	0.77	0.84	0.91	10290	1330	7	0	0	0	0	logfile
✔	6MRT	9212	2023-07-03	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.38	0.00	2.211	3.09	1.33	0.6	99.4	0.0	5.41	3.08	0.73	0.87	2.47	26868	3420	12	0	0	0	0	logfile
✔	7ZXo	15012	2023-07-08	2022-05-21	2.5	2.89	2.54	2.7	0.003	0.52	0.0	0.04	15.39	0.01	2.216	2.71	1.36	0.0	100.0	0.0	4.19	0.72	0.88	3.47	2.7	0.003	0.48	0.0	0.04	15.90	0.00	2.186	3.88	1.73	0.6	99.4	0.0	4.29	0.62	0.65	0.92	3.20	17016	2124	12	0	0	0	0	logfile
✔	8CU8	26996	2023-07-16	2022-05-16	1.91	2.52	1.91	2.2	0.005	0.65	0.0	0.05	13.91	0.01	2.043	0.74	0.00	0.6	99.4	0.0	1.28	0.87	0.93	5.94	2.2	0.003	0.53	0.0	0.04	16.47	0.00	1.989	1.18	0.00	0.6	99.4	0.0	5.71	0.29	0.88	0.94	5.13	35271	4032	72	0	24	2271	0	logfile
✔	6TRE	10560	2023-07-17	2019-12-18	3.3	3.45	3.26	3.4	0.009	0.89	0.0	0.04	14.70	0.00	2.016	18.28	11.33	10.3	89.7	0.0	-3.34	0.72	0.78	2.68	3.4	0.003	0.65	0.0	0.04	15.76	0.00	2.115	11.62	0.93	0.6	99.4	0.0	-0.45	1.08	0.70	0.78	2.62	38176	4832	32	0	0	0	0	logfile
✔	7TiK	25912	2023-07-03	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.50	0.0	0.04	16.49	0.00	2.245	8.91	1.01	0.6	99.4	0.0	5.53	0.94	0.78	0.80	1.16	2565	339	6	0	0	0	0	logfile
✔	8BC3	15961	2023-07-08	2022-10-14	2.1	2.00	2.14	2.2	0.014	2.07	0.0	0.11	17.99	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.83	5.67	2.1	0.002	0.54	0.0	0.04	15.44	0.00	2.168	4.01	0.63	0.6	99.4	0.0	1.85	0.51	0.76	0.87	5.99	16880	2170	30	0	10	500	0	logfile
✔	6MRU	9213	2023-07-05	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.25	0.00	2.193	3.51	0.00	0.6	99.4	0.0	5.67	3.08	0.76	0.87	1.78	29107	3705	13	0	0	0	0	logfile
✔	7T4F	25675	2023-07-04	2021-12-09	2.7	3.13	2.69	3.1	0.004	0.70	0.0	0.05	14.61	0.00	2.228	4.75	2.44	0.3	99.7	0.0	0.54	0.33	0.71	4.04	3.1	0.003	0.52	0.0	0.05	15.29	0.00	2.217	4.40	1.41	0.6	99.4	0.0	0.30	0.37	0.34	0.80	4.44	7224	980	4	0	0	0	0	logfile

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