Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6L3U	0826	2022-12-14	2019-10-15	2.53	2.59	2.48	2.6	0.010	0.96	0.0	0.05	16.88	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.50	0.0	0.03	16.80	0.00	2.116	1.75	1.41	0.5	99.5	0.0	2.85	2.33	0.63	0.86	2.81	19698	1206	18	0	12	174	9588	logfile
✔	7o6E	12738	2022-12-19	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.46	0.0	0.03	18.16	0.00	2.221	3.78	0.29	0.5	99.5	0.0	4.53	0.29	0.88	0.89	5.11	35304	4248	48	0	0	1392	0	logfile
✔	6L3V	0827	2022-12-14	2019-10-15	2.63	2.90	2.72	2.9	0.009	0.92	0.0	0.04	17.16	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.002	0.58	0.0	0.03	16.60	0.00	2.191	1.81	1.72	0.5	99.5	0.0	2.35	3.59	0.58	0.87	2.87	19416	1206	12	0	6	0	9528	logfile
✔	6MRU	9213	2022-12-12	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	6ZGL	11210	2022-12-13	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.41	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.56	0.0	0.04	15.75	0.00	2.118	4.99	1.00	0.6	99.4	0.0	3.59	0.75	0.75	0.83	7.07	15760	1848	24	0	0	964	0	logfile
✔	7D4P	30575	2022-12-14	2020-09-24	2.7	3.03	2.86	3.0	0.007	0.80	0.0	0.04	13.57	0.00	2.269	4.81	0.67	1.2	98.8	0.0	2.42	0.58	0.76	3.11	3.0	0.002	0.47	0.0	0.03	15.82	0.00	2.214	4.66	0.84	0.6	99.4	0.0	2.84	0.62	0.61	0.79	2.63	22472	2676	8	0	28	0	0	logfile
✔	7PCH	13320	2022-12-12	2021-08-03	2.89	3.82	2.93	3.4	0.012	1.54	0.0	0.10	13.62	0.01	2.343	0.97	0.55	3.7	96.3	0.0	1.22	0.89	0.83	3.70	3.4	0.003	0.63	0.0	0.04	14.48	0.00	2.180	6.57	0.64	0.6	99.4	0.0	2.27	1.58	0.91	0.89	3.64	10798	1254	16	0	4	510	0	logfile
✔	6ZBJ	11156	2022-12-20	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.7	0.002	0.49	0.0	0.03	15.19	0.00	2.052	3.24	0.00	0.6	99.4	0.0	3.74	1.29	0.87	0.82	1.11	39212	2334	4	0	0	0	19864	logfile
✔	7KoG	22975	2022-12-13	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.26	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	4.0	0.003	0.78	0.0	0.04	16.82	0.00	2.101	13.13	0.00	0.7	99.3	0.0	2.62	1.67	0.75	0.75	—	17384	2154	2	0	0	0	0	logfile
✔	7D84	30612	2022-12-21	2020-10-07	3.7	4.34	3.76	4.2	0.009	0.90	0.0	0.05	15.25	0.01	2.271	6.09	7.78	2.1	97.9	0.0	-2.70	0.84	0.84	2.66	4.2	0.003	0.81	0.0	0.04	17.51	0.00	2.102	12.98	0.25	0.7	99.3	0.0	0.26	1.36	0.82	0.82	2.99	42704	5406	34	0	0	0	0	logfile
✔	7JLW	22382	2022-12-21	2020-07-30	2.5	2.52	2.49	2.5	0.011	1.39	0.0	0.07	14.27	0.00	2.377	4.26	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.004	0.51	0.0	0.04	15.02	0.00	2.005	5.66	1.42	0.7	99.3	0.0	2.85	0.97	0.66	0.86	4.30	40284	2316	36	0	132	204	18720	logfile
✔	7SiP	25147	2022-12-11	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	16.74	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.48	0.0	0.04	15.60	0.00	2.203	3.43	1.74	0.7	99.3	0.0	1.27	0.99	0.59	0.83	2.64	7560	892	12	0	36	20	0	logfile
✔	7ZCU	14633	2022-12-12	2022-03-28	2.7	2.42	2.63	2.6	0.013	2.85	0.0	0.04	17.20	0.01	2.218	4.15	0.00	1.8	98.2	0.0	1.48	0.65	0.81	3.95	2.6	0.003	1.44	0.0	0.04	17.67	0.00	2.169	7.16	1.01	0.7	99.3	0.0	3.33	0.78	0.68	0.86	2.31	10149	958	47	0	42	9	0	logfile
✔	6A7F	6993	2022-12-12	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.004	0.72	0.0	0.04	17.88	0.00	2.141	15.46	0.41	0.7	99.3	0.0	2.04	2.05	0.60	0.86	0.03	10830	1410	30	0	0	0	0	logfile
✔	6XKJ	22219	2022-12-12	2020-06-26	3.54	3.39	—	3.4	0.009	0.83	0.0	0.05	14.92	0.00	2.246	12.86	0.00	2.4	97.6	0.0	0.54	0.62	0.85	1.81	3.3	0.003	0.70	0.0	0.04	18.71	0.00	2.200	11.78	0.65	0.8	99.2	0.0	1.03	1.39	0.61	0.85	1.50	11056	1360	16	0	0	0	0	logfile
✔	6ZBG	11154	2022-12-14	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.48	0.0	0.03	15.23	0.00	2.136	4.66	0.00	0.8	99.2	0.0	4.37	1.86	0.85	0.79	1.54	19534	1160	4	0	0	0	9902	logfile
✔	7KoD	22972	2022-12-13	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.51	0.0	0.04	13.89	0.00	1.846	2.78	0.11	0.8	99.2	0.0	5.13	0.58	0.87	0.93	8.03	68186	4128	48	0	0	1727	32643	logfile
✔	7WDB	32436	2022-12-14	2021-12-21	2.4	2.54	—	2.6	0.016	1.47	0.0	0.05	14.91	0.01	2.275	6.62	0.84	0.8	99.2	0.0	2.67	0.78	0.91	4.31	2.6	0.002	0.47	0.0	0.03	15.91	0.00	2.199	5.31	1.35	0.8	99.2	0.0	2.85	1.05	0.76	0.91	4.33	22400	2660	8	0	28	0	0	logfile
✔	7oNJ	12996	2022-12-13	2021-05-25	2.3	2.52	2.24	2.5	0.011	0.97	0.0	0.06	18.45	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.003	0.46	0.0	0.04	18.21	0.00	2.171	7.75	0.47	0.8	99.2	0.0	2.22	1.55	0.76	0.90	4.35	16947	1834	21	0	63	266	0	logfile
✔	6WQ0	21867	2022-12-12	2020-04-28	2.8	2.89	—	2.9	0.007	0.71	0.0	0.04	13.85	0.01	2.210	4.29	0.00	1.6	98.4	0.0	-0.40	0.60	0.90	4.25	2.9	0.004	0.60	0.0	0.04	15.18	0.00	2.253	4.22	0.95	0.8	99.2	0.0	3.12	1.11	0.59	0.90	3.77	57467	6026	48	602	0	0	0	logfile

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