Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E2H	27836	2023-04-21	2022-08-15	2.3	2.41	2.27	2.4	0.003	0.60	0.0	0.03	15.28	0.00	1.980	6.85	0.52	1.1	98.9	0.0	1.61	0.65	0.82	4.36	2.4	0.004	0.58	0.0	0.04	16.12	0.00	1.971	7.33	2.78	0.8	99.2	0.0	2.63	0.93	0.65	0.83	4.00	10412	656	1	0	0	40	5280	logfile
✔	6oVH	20212	2023-04-21	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.003	0.75	0.0	0.04	18.69	0.00	2.055	2.87	0.38	0.8	99.2	0.0	2.63	0.98	0.77	0.89	3.77	10895	1272	36	0	68	171	0	logfile
✔	7WiJ	32531	2023-04-22	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	7o0W	12681	2023-04-20	2021-03-27	2.47	2.42	—	2.3	0.018	4.34	0.0	0.06	24.63	0.01	2.010	1.98	0.28	1.4	98.6	0.0	1.25	0.82	0.86	5.37	2.3	0.003	1.68	0.0	0.03	21.17	0.00	1.957	7.86	0.98	0.9	99.1	0.0	3.96	1.12	0.83	0.88	3.91	56476	5076	236	0	320	406	0	logfile
✔	7o0U	12679	2023-04-20	2021-03-27	2.35	2.42	—	2.3	0.018	4.37	0.0	0.06	24.75	0.01	2.121	1.73	0.41	1.2	98.8	0.0	1.39	0.83	0.86	5.52	2.3	0.003	1.70	0.0	0.03	21.23	0.00	1.834	7.34	1.15	0.9	99.1	0.0	4.12	2.04	0.84	0.89	4.24	55758	4972	236	0	320	491	0	logfile
✔	7NK9	12434	2023-04-24	2021-02-17	2.9	3.29	—	3.2	0.003	0.50	0.0	0.04	13.03	0.00	2.087	6.80	0.00	2.9	97.1	0.0	1.61	0.68	0.86	1.78	3.2	0.004	0.55	0.0	0.04	15.16	0.00	2.081	6.69	1.39	0.9	99.1	0.0	3.96	0.45	0.68	0.88	1.31	18081	1225	14	0	0	0	9158	logfile
✔	7SJ1	25152	2023-04-20	2021-10-15	2.9	3.13	—	3.3	0.011	1.01	0.0	0.04	16.65	0.00	2.351	8.63	0.61	2.1	97.9	0.0	2.80	0.58	0.77	3.41	3.3	0.003	0.66	0.0	0.04	16.11	0.00	2.239	9.61	0.61	0.9	99.1	0.0	2.89	1.09	0.51	0.79	2.21	6463	784	9	0	34	1	0	logfile
✔	6ZHX	11220	2023-04-22	2020-06-24	2.5	3.01	2.43	2.7	0.005	0.92	0.0	0.06	26.86	0.01	2.203	2.63	0.46	1.0	99.0	0.0	0.63	0.88	0.90	5.80	2.7	0.005	0.60	0.0	0.04	28.52	0.00	2.180	4.72	0.62	0.9	99.1	0.0	2.83	0.45	0.89	0.92	4.54	12313	784	22	290	0	146	0	logfile
✔	7SCA	25031	2023-04-20	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.28	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	6XSS	22305	2023-04-20	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.80	0.0	0.04	16.96	0.00	2.251	16.62	0.49	0.9	99.1	0.0	2.42	1.33	0.74	0.79	0.26	8048	1040	4	0	0	0	0	logfile
✔	8D1K	27133	2023-04-23	2022-05-27	2.28	2.51	2.43	2.5	0.013	1.28	0.0	0.07	18.10	0.01	2.287	6.59	2.65	1.1	98.9	0.0	0.89	0.70	0.91	4.11	2.5	0.004	0.58	0.0	0.04	17.05	0.00	2.240	5.19	1.59	0.9	99.1	0.0	1.18	0.37	0.66	0.89	4.00	16305	1880	10	0	45	0	0	logfile
✔	6RAH	4775	2023-04-21	2019-04-06	2.8	2.99	3.01	2.9	0.008	1.53	9.0	0.09	9.90	0.01	2.022	9.87	0.00	2.1	97.7	0.2	-2.51	0.72	0.81	2.84	2.9	0.003	0.64	0.0	0.04	15.87	0.00	1.911	6.71	1.63	0.9	99.1	0.0	1.79	0.72	0.76	0.85	2.10	10161	1277	7	0	4	4	0	logfile
✔	6ZGL	11210	2023-04-23	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.52	0.0	0.04	15.83	0.00	2.114	4.28	0.93	0.9	99.1	0.0	3.77	0.76	0.75	0.83	7.09	15760	1848	24	0	0	964	0	logfile
✔	7QRU	14124	2023-04-23	2022-01-12	2.24	2.32	2.24	2.4	0.020	2.18	9.0	0.10	14.53	0.02	2.058	6.63	2.50	2.6	97.4	0.1	-1.62	0.79	0.91	4.88	2.4	0.004	0.60	0.0	0.04	15.74	0.00	2.169	5.83	1.43	0.9	99.1	0.0	2.24	1.15	0.79	0.90	4.06	16100	1957	18	0	3	360	0	logfile
✔	6LYG	30016	2023-04-23	2020-02-14	3.1	3.32	—	3.3	0.004	0.58	0.0	0.04	14.40	0.00	2.299	8.29	0.00	1.7	98.3	0.0	-0.02	0.54	0.76	2.03	3.3	0.004	0.55	0.0	0.04	16.12	0.00	2.238	5.68	0.39	1.0	99.0	0.0	3.18	0.77	0.65	0.86	1.89	14688	1856	16	0	8	0	0	logfile
✔	7o0X	12682	2023-04-20	2021-03-28	2.44	2.39	—	2.3	0.018	4.34	0.0	0.06	24.66	0.01	2.099	1.65	0.23	1.4	98.6	0.0	1.33	0.82	0.86	5.55	2.3	0.004	1.73	0.0	0.04	20.98	0.00	2.058	6.64	1.13	1.0	99.0	0.0	3.90	0.49	0.83	0.88	4.22	56446	5072	237	0	316	521	0	logfile
✔	8BC4	15962	2023-04-24	2022-10-14	2.7	2.11	2.15	2.5	0.015	2.14	1.0	0.11	17.93	0.02	2.310	4.45	10.79	4.1	95.8	0.0	-4.88	0.59	0.73	3.14	2.4	0.003	0.62	0.0	0.05	16.84	0.00	2.086	5.17	2.11	1.0	99.0	0.0	0.90	0.65	0.61	0.76	3.72	16440	2167	29	0	9	270	0	logfile
✔	7T4N	25681	2023-04-20	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.49	0.0	0.04	16.48	0.00	2.284	5.93	1.53	1.0	99.0	0.0	1.61	0.24	0.66	0.87	3.71	6476	803	2	0	0	0	0	logfile
✔	7ZDi	14650	2023-04-21	2022-03-29	2.9	3.06	2.82	3.1	0.013	2.74	0.0	0.04	16.49	0.01	2.378	3.63	0.00	0.9	99.1	0.0	1.10	0.64	0.84	5.30	3.1	0.005	1.48	0.0	0.04	16.61	0.00	2.159	5.01	0.37	1.0	99.0	0.0	3.01	0.30	0.69	0.87	4.42	10284	976	38	0	42	0	0	logfile
✔	7o0V	12680	2023-04-20	2021-03-27	2.5	2.50	—	2.4	0.018	4.38	0.0	0.06	24.68	0.01	2.117	1.81	0.31	1.2	98.8	0.0	1.63	0.82	0.86	5.41	2.4	0.007	1.84	0.0	0.04	22.08	0.00	2.013	8.44	1.38	1.0	99.0	0.0	3.41	0.50	0.84	0.89	4.41	55475	4947	238	0	317	489	0	logfile

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