Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o6Q	12740	2022-07-03	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.46	0.00	2.188	5.16	1.63	0.8	99.2	0.0	3.35	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	6XKJ	22219	2022-07-03	2020-06-26	3.54	3.39	—	3.4	0.009	0.83	0.0	0.05	14.92	0.00	2.246	12.86	0.00	2.4	97.6	0.0	0.54	0.62	0.85	1.81	3.3	0.003	0.70	0.0	0.04	18.71	0.00	2.200	11.78	0.65	0.8	99.2	0.0	1.03	1.39	0.61	0.85	1.50	11056	1360	16	0	0	0	0	logfile
✔	6ZBG	11154	2022-07-04	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.49	0.0	0.03	15.27	0.00	2.144	4.35	0.00	0.8	99.2	0.0	4.36	1.86	0.85	0.79	1.37	19534	1160	4	0	0	0	9902	logfile
✔	6WQ0	21867	2022-07-03	2020-04-28	2.8	2.89	—	2.9	0.007	0.71	0.0	0.04	13.85	0.01	2.210	4.29	0.00	1.6	98.4	0.0	-0.40	0.60	0.90	4.25	2.9	0.004	0.60	0.0	0.04	15.22	0.00	2.251	4.20	1.08	0.8	99.2	0.0	3.08	1.11	0.60	0.90	3.78	57467	6026	48	602	0	0	0	logfile
✔	6RVV	4443	2022-07-03	2019-06-03	3.7	3.95	—	3.9	0.006	0.60	0.0	0.05	13.27	0.00	2.245	2.48	0.00	2.0	98.0	0.0	-2.44	0.78	0.82	2.75	3.9	0.006	0.69	0.0	0.05	18.04	0.00	2.001	12.14	1.26	0.8	99.2	0.0	-1.21	1.07	0.79	0.83	3.00	110208	14520	384	0	120	0	0	logfile
✔	7D4P	30575	2022-07-05	2020-09-24	2.7	3.03	2.86	3.0	0.007	0.80	0.0	0.04	13.57	0.00	2.269	4.70	0.67	1.2	98.8	0.0	2.42	0.58	0.76	3.11	3.0	0.002	0.48	0.0	0.03	15.83	0.00	2.208	4.35	1.01	0.9	99.1	0.0	2.71	0.61	0.59	0.78	2.69	22472	2676	8	0	28	0	0	logfile
✔	6ZBJ	11156	2022-07-07	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.7	0.002	0.49	0.0	0.03	15.22	0.00	2.046	3.49	0.00	0.9	99.1	0.0	3.86	1.30	0.87	0.82	1.19	39212	2334	4	0	0	0	19864	logfile
✔	7P0Z	13153	2022-07-03	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.53	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.004	0.55	0.0	0.03	18.11	0.00	2.143	5.09	2.08	0.9	99.1	0.0	5.03	0.54	0.84	0.88	2.29	12873	1652	7	0	0	0	0	logfile
✔	7P5M	13201	2022-07-03	2021-07-14	3.92	3.54	3.67	3.7	0.003	0.55	0.0	0.04	14.29	0.00	2.209	8.88	0.00	0.9	99.1	0.0	3.52	0.51	0.77	1.01	3.7	0.016	1.49	1.0	0.04	17.09	0.01	1.835	13.48	0.46	0.9	99.1	0.0	3.87	0.43	0.52	0.77	0.92	6204	788	8	0	12	0	0	logfile
✔	7T6o	25721	2022-07-04	2021-12-14	2.6	2.80	—	2.9	0.004	0.79	0.0	0.05	14.06	0.01	2.302	2.72	0.00	1.3	98.7	0.0	-1.56	0.67	0.84	3.82	2.8	0.003	0.55	0.0	0.04	16.18	0.00	2.177	6.57	1.48	1.0	99.0	0.0	1.55	0.90	0.69	0.88	3.72	19412	2424	4	0	0	0	0	logfile
✔	7WiJ	32531	2022-07-03	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.92	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.004	0.56	0.0	0.04	15.62	0.00	2.266	4.80	0.08	1.0	99.0	0.0	3.19	0.26	0.73	0.88	1.96	12396	1602	6	0	0	0	0	logfile
✔	6ZBL	11157	2022-07-07	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.003	0.47	0.0	0.03	15.53	0.00	2.015	2.99	0.00	1.0	99.0	0.0	4.19	1.34	0.88	0.82	0.89	39074	2326	4	0	0	0	19788	logfile
✔	7QER	13938	2022-07-04	2021-12-03	2.2	2.66	2.18	2.3	0.011	0.71	0.0	0.05	14.00	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.003	0.57	0.0	0.04	14.90	0.00	2.228	2.27	2.00	1.0	99.0	0.0	3.45	1.24	0.84	0.89	3.51	19097	2244	36	0	60	305	0	logfile
✔	7JSV	22460	2022-07-05	2020-08-16	3.9	3.98	—	4.0	0.020	2.10	0.0	0.10	13.46	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.003	0.79	0.0	0.04	15.99	0.00	2.123	12.88	0.38	1.0	99.0	0.0	0.10	0.90	0.64	0.83	2.63	22140	2706	82	0	41	0	0	logfile
✔	7T0X	25584	2022-07-08	2021-11-30	4.4	4.45	—	4.3	0.006	0.81	0.0	0.04	13.87	0.00	2.117	45.77	0.00	1.3	98.7	0.0	-0.28	0.74	0.80	—	4.3	0.003	0.71	0.0	0.03	15.32	0.00	2.121	16.17	0.00	1.0	99.0	0.0	1.61	1.56	0.74	0.79	—	147840	17640	840	0	0	0	0	logfile
✔	7MQF	23945	2022-07-05	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.47	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.44	0.00	2.256	3.06	0.00	1.0	99.0	0.0	1.02	0.44	0.80	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	7oFH	12874	2022-07-05	2021-05-05	2.7	2.70	—	2.7	0.010	1.60	31.0	0.11	16.73	0.01	2.236	13.88	3.90	12.3	87.6	0.1	-4.46	0.71	0.83	1.69	2.7	0.003	0.65	0.0	0.05	17.73	0.00	2.179	4.78	2.93	1.0	99.0	0.0	-0.17	1.34	0.75	0.85	2.30	27135	3465	30	0	30	0	0	logfile
✔	7QL0	14059	2022-07-03	2021-12-19	3.13	2.96	2.97	3.1	0.011	1.87	0.0	0.09	12.06	0.01	2.510	0.63	0.00	4.0	96.0	0.0	-2.04	0.39	0.77	6.02	3.2	0.003	0.59	0.0	0.05	14.24	0.00	2.080	6.42	0.00	1.0	99.0	0.0	-1.71	1.66	0.42	0.84	5.81	6390	414	6	0	0	0	3258	logfile
✔	7NK9	12434	2022-07-04	2021-02-17	2.9	3.29	—	3.2	0.003	0.50	0.0	0.04	13.03	0.00	2.087	6.80	0.00	2.9	97.1	0.0	1.61	0.68	0.86	1.78	3.2	0.004	0.56	0.0	0.04	15.15	0.00	2.114	6.42	0.81	1.0	99.0	0.0	4.02	0.43	0.68	0.87	1.42	18081	1225	14	0	0	0	9158	logfile
✔	7DSE	30832	2022-07-03	2020-12-30	3.2	4.06	—	3.8	0.005	0.61	0.0	0.04	12.28	0.00	2.295	17.33	0.00	2.7	97.3	0.0	-0.37	0.60	0.80	1.39	3.8	0.004	0.74	0.0	0.04	16.40	0.01	2.209	14.42	0.22	1.1	98.9	0.0	2.46	1.56	0.62	0.83	2.09	13006	1631	14	0	7	0	0	logfile

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