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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6L3U | 0826 | 2022-12-14 | 2019-10-15 | 2.53 | 2.59 | 2.48 | 2.6 | 0.010 | 0.96 | 0.0 | 0.05 | 16.88 | 0.01 | 2.206 | 0.45 | 3.01 | 1.9 | 98.1 | 0.0 | -2.86 | 0.64 | 0.84 | 4.02 | 2.6 | 0.002 | 0.50 | 0.0 | 0.03 | 16.80 | 0.00 | 2.116 | 1.75 | 1.41 | 0.5 | 99.5 | 0.0 | 2.85 | 2.33 | 0.63 | 0.86 | 2.81 | 19698 | 1206 | 18 | 0 | 12 | 174 | 9588 | logfile |
✔ | 7o6E | 12738 | 2022-12-19 | 2021-04-10 | 2.1 | 1.78 | 2.15 | 1.6 | 0.017 | 1.10 | 0.0 | 0.07 | 18.13 | 0.01 | 2.110 | 3.61 | 0.00 | 2.3 | 97.7 | 0.0 | 2.10 | 0.87 | 0.88 | 6.02 | 1.6 | 0.003 | 0.46 | 0.0 | 0.03 | 18.16 | 0.00 | 2.221 | 3.78 | 0.29 | 0.5 | 99.5 | 0.0 | 4.53 | 0.29 | 0.88 | 0.89 | 5.11 | 35304 | 4248 | 48 | 0 | 0 | 1392 | 0 | logfile |
✔ | 6L3V | 0827 | 2022-12-14 | 2019-10-15 | 2.63 | 2.90 | 2.72 | 2.9 | 0.009 | 0.92 | 0.0 | 0.04 | 17.16 | 0.01 | 2.218 | 1.00 | 5.45 | 0.5 | 99.5 | 0.0 | -5.00 | 0.57 | 0.85 | 3.54 | 2.9 | 0.002 | 0.58 | 0.0 | 0.03 | 16.60 | 0.00 | 2.191 | 1.81 | 1.72 | 0.5 | 99.5 | 0.0 | 2.35 | 3.59 | 0.58 | 0.87 | 2.87 | 19416 | 1206 | 12 | 0 | 6 | 0 | 9528 | logfile |
✔ | 6MRU | 9213 | 2022-12-12 | 2018-10-15 | 3.2 | 3.31 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 10.16 | 0.01 | 2.297 | 2.27 | 0.82 | 1.4 | 98.6 | 0.0 | -1.59 | 0.72 | 0.83 | 3.34 | 3.3 | 0.002 | 0.46 | 0.0 | 0.03 | 13.26 | 0.00 | 2.192 | 3.53 | 0.00 | 0.6 | 99.4 | 0.0 | 5.66 | 3.08 | 0.75 | 0.86 | 1.81 | 29107 | 3705 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZGL | 11210 | 2022-12-13 | 2020-06-19 | 1.9 | 1.87 | — | 1.9 | 0.013 | 1.55 | 0.0 | 0.12 | 15.52 | 0.01 | 2.196 | 9.41 | 3.73 | 1.1 | 98.9 | 0.0 | 0.13 | 0.73 | 0.83 | 7.03 | 1.9 | 0.003 | 0.56 | 0.0 | 0.04 | 15.75 | 0.00 | 2.118 | 4.99 | 1.00 | 0.6 | 99.4 | 0.0 | 3.59 | 0.75 | 0.75 | 0.83 | 7.07 | 15760 | 1848 | 24 | 0 | 0 | 964 | 0 | logfile |
✔ | 7D4P | 30575 | 2022-12-14 | 2020-09-24 | 2.7 | 3.03 | 2.86 | 3.0 | 0.007 | 0.80 | 0.0 | 0.04 | 13.57 | 0.00 | 2.269 | 4.81 | 0.67 | 1.2 | 98.8 | 0.0 | 2.42 | 0.58 | 0.76 | 3.11 | 3.0 | 0.002 | 0.47 | 0.0 | 0.03 | 15.82 | 0.00 | 2.214 | 4.66 | 0.84 | 0.6 | 99.4 | 0.0 | 2.84 | 0.62 | 0.61 | 0.79 | 2.63 | 22472 | 2676 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7PCH | 13320 | 2022-12-12 | 2021-08-03 | 2.89 | 3.82 | 2.93 | 3.4 | 0.012 | 1.54 | 0.0 | 0.10 | 13.62 | 0.01 | 2.343 | 0.97 | 0.55 | 3.7 | 96.3 | 0.0 | 1.22 | 0.89 | 0.83 | 3.70 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 14.48 | 0.00 | 2.180 | 6.57 | 0.64 | 0.6 | 99.4 | 0.0 | 2.27 | 1.58 | 0.91 | 0.89 | 3.64 | 10798 | 1254 | 16 | 0 | 4 | 510 | 0 | logfile |
✔ | 6ZBJ | 11156 | 2022-12-20 | 2020-06-08 | 3.3 | 4.20 | 3.47 | 3.8 | 0.011 | 1.04 | 0.0 | 0.06 | 14.14 | 0.01 | 2.351 | 1.38 | 0.00 | 0.7 | 99.3 | 0.0 | -1.34 | 0.87 | 0.81 | 1.60 | 3.7 | 0.002 | 0.49 | 0.0 | 0.03 | 15.19 | 0.00 | 2.052 | 3.24 | 0.00 | 0.6 | 99.4 | 0.0 | 3.74 | 1.29 | 0.87 | 0.82 | 1.11 | 39212 | 2334 | 4 | 0 | 0 | 0 | 19864 | logfile |
✔ | 7KoG | 22975 | 2022-12-13 | 2020-11-09 | 4.25 | 3.30 | — | 6.0 | 0.005 | 1.03 | 1.0 | 0.04 | 18.29 | 0.00 | 1.580 | 10.26 | 0.70 | 0.5 | 99.5 | 0.0 | -6.22 | 0.69 | 0.62 | — | 4.0 | 0.003 | 0.78 | 0.0 | 0.04 | 16.82 | 0.00 | 2.101 | 13.13 | 0.00 | 0.7 | 99.3 | 0.0 | 2.62 | 1.67 | 0.75 | 0.75 | — | 17384 | 2154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D84 | 30612 | 2022-12-21 | 2020-10-07 | 3.7 | 4.34 | 3.76 | 4.2 | 0.009 | 0.90 | 0.0 | 0.05 | 15.25 | 0.01 | 2.271 | 6.09 | 7.78 | 2.1 | 97.9 | 0.0 | -2.70 | 0.84 | 0.84 | 2.66 | 4.2 | 0.003 | 0.81 | 0.0 | 0.04 | 17.51 | 0.00 | 2.102 | 12.98 | 0.25 | 0.7 | 99.3 | 0.0 | 0.26 | 1.36 | 0.82 | 0.82 | 2.99 | 42704 | 5406 | 34 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JLW | 22382 | 2022-12-21 | 2020-07-30 | 2.5 | 2.52 | 2.49 | 2.5 | 0.011 | 1.39 | 0.0 | 0.07 | 14.27 | 0.00 | 2.377 | 4.26 | 1.14 | 1.1 | 98.9 | 0.0 | 0.51 | 0.62 | 0.82 | 4.64 | 2.5 | 0.004 | 0.51 | 0.0 | 0.04 | 15.02 | 0.00 | 2.005 | 5.66 | 1.42 | 0.7 | 99.3 | 0.0 | 2.85 | 0.97 | 0.66 | 0.86 | 4.30 | 40284 | 2316 | 36 | 0 | 132 | 204 | 18720 | logfile |
✔ | 7SiP | 25147 | 2022-12-11 | 2021-10-14 | 3.0 | 3.27 | — | 3.3 | 0.011 | 1.17 | 0.0 | 0.04 | 16.74 | 0.01 | 2.313 | 3.17 | 0.00 | 0.9 | 99.1 | 0.0 | 0.93 | 0.63 | 0.81 | 2.85 | 3.3 | 0.003 | 0.48 | 0.0 | 0.04 | 15.60 | 0.00 | 2.203 | 3.43 | 1.74 | 0.7 | 99.3 | 0.0 | 1.27 | 0.99 | 0.59 | 0.83 | 2.64 | 7560 | 892 | 12 | 0 | 36 | 20 | 0 | logfile |
✔ | 7ZCU | 14633 | 2022-12-12 | 2022-03-28 | 2.7 | 2.42 | 2.63 | 2.6 | 0.013 | 2.85 | 0.0 | 0.04 | 17.20 | 0.01 | 2.218 | 4.15 | 0.00 | 1.8 | 98.2 | 0.0 | 1.48 | 0.65 | 0.81 | 3.95 | 2.6 | 0.003 | 1.44 | 0.0 | 0.04 | 17.67 | 0.00 | 2.169 | 7.16 | 1.01 | 0.7 | 99.3 | 0.0 | 3.33 | 0.78 | 0.68 | 0.86 | 2.31 | 10149 | 958 | 47 | 0 | 42 | 9 | 0 | logfile |
✔ | 6A7F | 6993 | 2022-12-12 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.004 | 0.72 | 0.0 | 0.04 | 17.88 | 0.00 | 2.141 | 15.46 | 0.41 | 0.7 | 99.3 | 0.0 | 2.04 | 2.05 | 0.60 | 0.86 | 0.03 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XKJ | 22219 | 2022-12-12 | 2020-06-26 | 3.54 | 3.39 | — | 3.4 | 0.009 | 0.83 | 0.0 | 0.05 | 14.92 | 0.00 | 2.246 | 12.86 | 0.00 | 2.4 | 97.6 | 0.0 | 0.54 | 0.62 | 0.85 | 1.81 | 3.3 | 0.003 | 0.70 | 0.0 | 0.04 | 18.71 | 0.00 | 2.200 | 11.78 | 0.65 | 0.8 | 99.2 | 0.0 | 1.03 | 1.39 | 0.61 | 0.85 | 1.50 | 11056 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZBG | 11154 | 2022-12-14 | 2020-06-08 | 3.2 | 3.97 | 3.37 | 3.6 | 0.010 | 1.15 | 0.0 | 0.07 | 13.62 | 0.01 | 2.468 | 1.13 | 0.00 | 1.1 | 98.9 | 0.0 | 0.72 | 0.84 | 0.78 | 2.20 | 3.6 | 0.002 | 0.48 | 0.0 | 0.03 | 15.23 | 0.00 | 2.136 | 4.66 | 0.00 | 0.8 | 99.2 | 0.0 | 4.37 | 1.86 | 0.85 | 0.79 | 1.54 | 19534 | 1160 | 4 | 0 | 0 | 0 | 9902 | logfile |
✔ | 7KoD | 22972 | 2022-12-13 | 2020-11-08 | 1.655 | 2.30 | — | 1.9 | 0.001 | 0.33 | 0.0 | 0.03 | 8.49 | 0.00 | 2.288 | 0.80 | 0.00 | 1.1 | 98.9 | 0.0 | 6.14 | 0.91 | 0.91 | 8.16 | 2.0 | 0.005 | 0.51 | 0.0 | 0.04 | 13.89 | 0.00 | 1.846 | 2.78 | 0.11 | 0.8 | 99.2 | 0.0 | 5.13 | 0.58 | 0.87 | 0.93 | 8.03 | 68186 | 4128 | 48 | 0 | 0 | 1727 | 32643 | logfile |
✔ | 7WDB | 32436 | 2022-12-14 | 2021-12-21 | 2.4 | 2.54 | — | 2.6 | 0.016 | 1.47 | 0.0 | 0.05 | 14.91 | 0.01 | 2.275 | 6.62 | 0.84 | 0.8 | 99.2 | 0.0 | 2.67 | 0.78 | 0.91 | 4.31 | 2.6 | 0.002 | 0.47 | 0.0 | 0.03 | 15.91 | 0.00 | 2.199 | 5.31 | 1.35 | 0.8 | 99.2 | 0.0 | 2.85 | 1.05 | 0.76 | 0.91 | 4.33 | 22400 | 2660 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7oNJ | 12996 | 2022-12-13 | 2021-05-25 | 2.3 | 2.52 | 2.24 | 2.5 | 0.011 | 0.97 | 0.0 | 0.06 | 18.45 | 0.00 | 2.155 | 8.48 | 0.47 | 0.8 | 99.2 | 0.0 | -0.25 | 0.76 | 0.88 | 5.16 | 2.5 | 0.003 | 0.46 | 0.0 | 0.04 | 18.21 | 0.00 | 2.171 | 7.75 | 0.47 | 0.8 | 99.2 | 0.0 | 2.22 | 1.55 | 0.76 | 0.90 | 4.35 | 16947 | 1834 | 21 | 0 | 63 | 266 | 0 | logfile |
✔ | 6WQ0 | 21867 | 2022-12-12 | 2020-04-28 | 2.8 | 2.89 | — | 2.9 | 0.007 | 0.71 | 0.0 | 0.04 | 13.85 | 0.01 | 2.210 | 4.29 | 0.00 | 1.6 | 98.4 | 0.0 | -0.40 | 0.60 | 0.90 | 4.25 | 2.9 | 0.004 | 0.60 | 0.0 | 0.04 | 15.18 | 0.00 | 2.253 | 4.22 | 0.95 | 0.8 | 99.2 | 0.0 | 3.12 | 1.11 | 0.59 | 0.90 | 3.77 | 57467 | 6026 | 48 | 602 | 0 | 0 | 0 | logfile |