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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7P5M | 13201 | 2022-04-04 | 2021-07-14 | 3.92 | 3.54 | 3.67 | 3.7 | 0.003 | 0.55 | 0.0 | 0.04 | 14.29 | 0.00 | 2.209 | 8.88 | 0.00 | 0.9 | 99.1 | 0.0 | 3.52 | 0.51 | 0.77 | 1.01 | 3.7 | 0.016 | 1.49 | 1.0 | 0.04 | 17.09 | 0.01 | 1.835 | 13.48 | 0.46 | 0.9 | 99.1 | 0.0 | 3.87 | 0.43 | 0.52 | 0.77 | 0.92 | 6204 | 788 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6RVV | 4443 | 2022-04-04 | 2019-06-03 | 3.7 | 3.95 | — | 3.9 | 0.006 | 0.60 | 0.0 | 0.05 | 13.27 | 0.00 | 2.245 | 2.48 | 0.00 | 2.0 | 98.0 | 0.0 | -2.44 | 0.78 | 0.82 | 2.75 | 3.9 | 0.006 | 0.71 | 0.0 | 0.05 | 18.10 | 0.00 | 2.008 | 12.10 | 1.24 | 0.9 | 99.1 | 0.0 | -1.15 | 1.07 | 0.79 | 0.83 | 2.99 | 110208 | 14520 | 384 | 0 | 120 | 0 | 0 | logfile |
✔ | 7JSV | 22460 | 2022-04-06 | 2020-08-16 | 3.9 | 3.98 | — | 4.0 | 0.019 | 1.51 | 0.0 | 0.10 | 10.55 | 0.01 | 2.348 | 6.75 | 0.00 | 0.0 | 100.0 | 0.0 | 1.16 | 0.61 | 0.80 | 2.43 | 4.0 | 0.004 | 0.79 | 0.0 | 0.04 | 15.94 | 0.00 | 2.147 | 11.99 | 0.42 | 0.9 | 99.1 | 0.0 | -0.29 | 0.91 | 0.64 | 0.83 | 2.56 | 22140 | 2706 | 82 | 0 | 41 | 0 | 0 | logfile |
✔ | 7D0i | 30535 | 2022-04-06 | 2020-09-10 | 3.0 | 2.89 | 2.95 | 3.1 | 0.008 | 0.78 | 0.0 | 0.05 | 14.12 | 0.00 | 2.237 | 5.55 | 2.60 | 2.6 | 97.4 | 0.0 | -2.14 | 0.69 | 0.81 | 2.98 | 3.1 | 0.011 | 1.05 | 2.0 | 0.04 | 16.56 | 0.00 | 1.747 | 8.00 | 2.21 | 0.9 | 99.1 | 0.0 | 1.61 | 1.40 | 0.69 | 0.83 | 2.70 | 22164 | 2544 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7o0V | 12680 | 2022-04-04 | 2021-03-27 | 2.5 | 2.50 | — | 2.4 | 0.017 | 4.36 | 0.0 | 0.05 | 21.56 | 0.01 | 2.117 | 1.77 | 0.31 | 1.2 | 98.8 | 0.0 | 1.63 | 0.82 | 0.86 | 5.41 | 2.4 | 0.006 | 1.83 | 0.0 | 0.04 | 21.22 | 0.01 | 2.031 | 7.64 | 1.31 | 0.9 | 99.1 | 0.0 | 3.43 | 0.49 | 0.83 | 0.88 | 4.33 | 55475 | 4947 | 238 | 0 | 317 | 489 | 0 | logfile |
✔ | 6ZBJ | 11156 | 2022-04-09 | 2020-06-08 | 3.3 | 4.20 | 3.47 | 3.8 | 0.011 | 1.04 | 0.0 | 0.06 | 14.14 | 0.01 | 2.351 | 1.38 | 0.00 | 0.7 | 99.3 | 0.0 | -1.34 | 0.87 | 0.81 | 1.60 | 3.7 | 0.002 | 0.49 | 0.0 | 0.03 | 15.22 | 0.00 | 2.046 | 3.44 | 0.00 | 0.9 | 99.1 | 0.0 | 3.86 | 1.30 | 0.87 | 0.82 | 1.19 | 39212 | 2334 | 4 | 0 | 0 | 0 | 19864 | logfile |
✔ | 7NK9 | 12434 | 2022-04-06 | 2021-02-17 | 2.9 | 3.29 | — | 3.2 | 0.003 | 0.50 | 0.0 | 0.04 | 13.03 | 0.00 | 2.087 | 6.80 | 0.00 | 2.9 | 97.1 | 0.0 | 1.61 | 0.68 | 0.86 | 1.78 | 3.2 | 0.004 | 0.56 | 0.0 | 0.04 | 15.15 | 0.00 | 2.114 | 6.42 | 0.81 | 1.0 | 99.0 | 0.0 | 4.02 | 0.43 | 0.68 | 0.87 | 1.42 | 18081 | 1225 | 14 | 0 | 0 | 0 | 9158 | logfile |
✔ | 7o0U | 12679 | 2022-04-04 | 2021-03-27 | 2.35 | 2.42 | — | 2.3 | 0.017 | 4.34 | 0.0 | 0.05 | 21.53 | 0.01 | 2.121 | 1.71 | 0.41 | 1.2 | 98.8 | 0.0 | 1.39 | 0.83 | 0.86 | 5.52 | 2.2 | 0.005 | 1.79 | 0.0 | 0.04 | 20.74 | 0.00 | 1.778 | 7.26 | 1.43 | 1.0 | 99.0 | 0.0 | 3.66 | 1.11 | 0.84 | 0.88 | 4.33 | 55758 | 4972 | 236 | 0 | 320 | 491 | 0 | logfile |
✔ | 6ZBL | 11157 | 2022-04-09 | 2020-06-08 | 3.6 | 4.39 | 3.70 | 4.0 | 0.014 | 1.20 | 0.0 | 0.07 | 14.69 | 0.01 | 2.400 | 1.54 | 0.00 | 0.7 | 99.3 | 0.0 | -0.56 | 0.87 | 0.79 | 1.33 | 4.0 | 0.003 | 0.47 | 0.0 | 0.03 | 15.53 | 0.00 | 2.015 | 2.99 | 0.00 | 1.0 | 99.0 | 0.0 | 4.19 | 1.34 | 0.88 | 0.82 | 0.89 | 39074 | 2326 | 4 | 0 | 0 | 0 | 19788 | logfile |
✔ | 7MQF | 23945 | 2022-04-06 | 2021-05-05 | 2.88 | 2.74 | 2.86 | 2.8 | 0.006 | 0.72 | 0.0 | 0.06 | 11.73 | 0.00 | 2.175 | 1.01 | 0.00 | 0.5 | 99.5 | 0.0 | 1.24 | 0.72 | 0.87 | 6.16 | 2.7 | 0.003 | 0.48 | 0.0 | 0.04 | 13.44 | 0.00 | 2.256 | 2.39 | 0.00 | 1.0 | 99.0 | 0.0 | 1.02 | 0.44 | 0.80 | 0.91 | 5.71 | 12288 | 1608 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 7oFH | 12874 | 2022-04-07 | 2021-05-05 | 2.7 | 2.70 | — | 2.7 | 0.010 | 1.60 | 31.0 | 0.11 | 16.73 | 0.01 | 2.236 | 13.88 | 3.90 | 12.3 | 87.6 | 0.1 | -4.46 | 0.71 | 0.83 | 1.69 | 2.7 | 0.003 | 0.65 | 0.0 | 0.05 | 17.73 | 0.00 | 2.179 | 4.78 | 2.93 | 1.0 | 99.0 | 0.0 | -0.17 | 1.34 | 0.75 | 0.85 | 2.30 | 27135 | 3465 | 30 | 0 | 30 | 0 | 0 | logfile |
✔ | 7o0W | 12681 | 2022-04-04 | 2021-03-27 | 2.47 | 2.42 | — | 2.3 | 0.017 | 4.33 | 0.0 | 0.05 | 21.50 | 0.01 | 2.010 | 1.97 | 0.28 | 1.4 | 98.6 | 0.0 | 1.25 | 0.82 | 0.86 | 5.37 | 2.3 | 0.003 | 1.71 | 0.0 | 0.04 | 20.80 | 0.00 | 1.922 | 7.40 | 1.28 | 1.0 | 99.0 | 0.0 | 3.83 | 1.12 | 0.82 | 0.87 | 4.03 | 56476 | 5076 | 236 | 0 | 320 | 406 | 0 | logfile |
✔ | 7QL0 | 14059 | 2022-04-04 | 2021-12-19 | 3.13 | 2.96 | 2.97 | 3.1 | 0.011 | 1.87 | 0.0 | 0.09 | 12.06 | 0.01 | 2.510 | 0.00 | 0.00 | 4.0 | 96.0 | 0.0 | -2.04 | 0.39 | 0.77 | 6.02 | 3.2 | 0.003 | 0.59 | 0.0 | 0.05 | 14.24 | 0.00 | 2.080 | 5.95 | 0.00 | 1.0 | 99.0 | 0.0 | -1.71 | 1.66 | 0.42 | 0.84 | 5.81 | 6390 | 414 | 6 | 0 | 0 | 0 | 3258 | logfile |
✔ | 7BYM | 30245 | 2022-04-05 | 2020-04-23 | 3.1 | 3.49 | — | 3.6 | 0.009 | 1.26 | 0.0 | 0.05 | 18.86 | 0.01 | 1.997 | 23.20 | 8.67 | 1.4 | 98.4 | 0.2 | -0.33 | 0.46 | 0.48 | 1.34 | 3.5 | 0.003 | 0.61 | 0.0 | 0.03 | 17.05 | 0.00 | 2.168 | 9.87 | 0.24 | 1.1 | 98.8 | 0.1 | 2.58 | 0.92 | 0.55 | 0.74 | 1.47 | 16411 | 2000 | 16 | 0 | 11 | 4 | 0 | logfile |
✔ | 7o0X | 12682 | 2022-04-04 | 2021-03-28 | 2.44 | 2.39 | — | 2.3 | 0.017 | 4.32 | 0.0 | 0.05 | 21.28 | 0.01 | 2.099 | 1.63 | 0.23 | 1.4 | 98.6 | 0.0 | 1.33 | 0.82 | 0.86 | 5.55 | 2.3 | 0.005 | 1.81 | 0.0 | 0.04 | 20.95 | 0.00 | 2.064 | 6.87 | 1.05 | 1.1 | 98.9 | 0.0 | 3.69 | 0.48 | 0.82 | 0.87 | 4.38 | 56446 | 5072 | 237 | 0 | 316 | 521 | 0 | logfile |
✔ | 7B03 | 11955 | 2022-04-04 | 2020-11-18 | 2.93 | 2.97 | — | 2.9 | 0.005 | 0.90 | 0.0 | 0.04 | 13.62 | 0.00 | 2.190 | 7.91 | 0.00 | 1.9 | 98.1 | 0.0 | 1.34 | 0.69 | 0.81 | 1.85 | 2.9 | 0.002 | 0.47 | 0.0 | 0.04 | 16.37 | 0.00 | 2.129 | 8.54 | 2.03 | 1.1 | 98.9 | 0.0 | 2.05 | 0.41 | 0.67 | 0.82 | 1.42 | 8670 | 1085 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6L3T | 0825 | 2022-04-06 | 2019-10-15 | 2.34 | 2.41 | 2.27 | 2.4 | 0.012 | 1.03 | 0.0 | 0.05 | 16.76 | 0.01 | 2.306 | 1.05 | 3.61 | 1.0 | 99.0 | 0.0 | -3.24 | 0.68 | 0.86 | 4.85 | 2.4 | 0.003 | 0.60 | 0.0 | 0.03 | 16.29 | 0.00 | 1.929 | 2.44 | 1.41 | 1.1 | 98.9 | 0.0 | 2.69 | 1.60 | 0.69 | 0.87 | 4.48 | 19722 | 1206 | 18 | 0 | 6 | 204 | 9588 | logfile |
✔ | 7PLT | 13501 | 2022-04-05 | 2021-09-01 | 3.3 | 3.94 | 3.24 | 3.4 | 0.014 | 1.15 | 2.0 | 0.07 | 14.57 | 0.01 | 1.312 | 4.11 | 0.00 | 0.2 | 99.8 | 0.0 | -1.61 | 0.92 | 0.87 | 3.10 | 3.5 | 0.003 | 0.68 | 1.0 | 0.04 | 15.28 | 0.00 | 2.010 | 7.53 | 0.09 | 1.1 | 98.9 | 0.0 | 1.64 | 0.63 | 0.91 | 0.88 | 2.19 | 10148 | 1264 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7MQD | 23943 | 2022-04-06 | 2021-05-05 | 3.25 | 3.21 | 3.21 | 3.3 | 0.003 | 0.62 | 0.0 | 0.05 | 13.35 | 0.00 | 2.456 | 1.98 | 0.00 | 1.0 | 99.0 | 0.0 | 1.04 | 0.75 | 0.83 | 3.89 | 3.3 | 0.003 | 0.49 | 0.0 | 0.04 | 14.25 | 0.00 | 2.268 | 3.97 | 0.00 | 1.1 | 98.9 | 0.0 | 1.76 | 1.29 | 0.78 | 0.87 | 4.30 | 11960 | 1592 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 7DSE | 30832 | 2022-04-05 | 2020-12-30 | 3.2 | 4.06 | — | 3.8 | 0.005 | 0.61 | 0.0 | 0.04 | 12.28 | 0.00 | 2.295 | 16.79 | 0.00 | 2.7 | 97.3 | 0.0 | -0.37 | 0.60 | 0.80 | 1.39 | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 16.40 | 0.01 | 2.209 | 14.18 | 0.22 | 1.1 | 98.9 | 0.0 | 2.46 | 1.56 | 0.62 | 0.83 | 2.09 | 13006 | 1631 | 14 | 0 | 7 | 0 | 0 | logfile |