Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C2H	16390	2023-09-30	2022-12-22	2.64	2.34	2.44	2.5	0.009	1.45	3.0	0.08	16.15	0.01	2.319	2.75	6.15	3.5	96.5	0.0	-1.37	0.57	0.85	5.38	2.5	0.002	0.51	0.0	0.03	14.95	0.00	2.079	3.40	1.88	0.9	99.1	0.0	2.60	0.57	0.63	0.88	3.98	10071	1238	24	0	12	86	0	logfile
✔	6RAH	4775	2023-09-30	2019-04-06	2.8	2.99	3.01	2.9	0.008	1.53	9.0	0.09	9.90	0.01	2.022	9.87	0.00	2.1	97.7	0.2	-2.51	0.72	0.81	2.84	2.9	0.003	0.64	0.0	0.04	15.87	0.00	1.911	6.71	1.63	0.9	99.1	0.0	1.79	0.72	0.76	0.85	2.10	10161	1277	7	0	4	4	0	logfile
✔	8EHR	28150	2023-09-28	2022-09-14	3.2	2.95	3.03	3.1	0.003	0.55	0.0	0.05	13.08	0.00	2.374	2.29	0.00	0.0	100.0	0.0	1.82	0.58	0.85	3.24	3.1	0.002	0.48	0.0	0.04	15.23	0.00	2.320	4.65	0.37	0.9	99.1	0.0	1.26	1.17	0.58	0.87	3.27	7350	1022	7	0	0	0	0	logfile
✔	8CKX	16705	2023-09-30	2023-02-16	2.97	3.24	2.98	3.3	0.005	0.87	0.0	0.06	12.70	0.01	2.453	0.76	0.19	1.0	99.0	0.0	-1.11	0.60	0.76	4.18	3.3	0.004	0.56	0.0	0.04	15.94	0.00	2.196	7.78	1.31	0.9	99.1	0.0	1.90	0.55	0.61	0.78	3.52	9857	1265	6	0	0	0	0	logfile
✔	8CKY	16706	2023-09-30	2023-02-16	2.6	3.00	2.57	2.9	0.004	0.82	0.0	0.05	12.58	0.01	1.934	7.36	0.54	0.5	99.5	0.0	0.20	0.62	0.77	5.97	2.9	0.004	0.56	0.0	0.04	17.98	0.00	2.163	8.97	2.17	0.9	99.1	0.0	1.82	0.63	0.62	0.79	4.63	10338	1344	12	0	0	0	0	logfile
✔	6XSS	22305	2023-09-28	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.80	0.0	0.04	16.96	0.00	2.251	16.62	0.49	0.9	99.1	0.0	2.42	1.33	0.74	0.79	0.26	8048	1040	4	0	0	0	0	logfile
✔	7Y5H	33620	2023-09-27	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	4.1	0.003	0.59	0.0	0.04	15.31	0.00	2.037	6.90	0.57	0.9	99.1	0.0	1.70	1.10	0.66	0.80	1.37	4704	600	4	0	4	0	0	logfile
✔	8Q9M	18286	2023-09-28	2023-08-20	2.65	2.53	2.47	2.7	0.011	1.76	0.0	0.09	11.56	0.01	2.640	0.28	0.00	1.8	98.2	0.0	-1.02	0.33	0.79	6.36	2.6	0.003	0.52	0.0	0.05	17.65	0.00	2.386	1.28	0.51	0.9	99.1	0.0	-1.58	1.45	0.41	0.90	6.12	7032	450	6	0	0	0	3588	logfile
✔	7QL0	14059	2023-09-28	2021-12-19	3.13	2.96	2.97	3.1	0.011	1.87	0.0	0.09	12.06	0.01	2.510	0.00	0.00	4.0	96.0	0.0	-2.04	0.39	0.77	6.02	3.2	0.003	0.59	0.0	0.05	14.36	0.00	2.094	6.58	0.00	1.0	99.0	0.0	-1.73	1.65	0.41	0.84	6.04	6390	414	6	0	0	0	3258	logfile
✔	8G92	29860	2023-09-27	2023-02-21	3.6	3.86	3.44	3.8	0.005	0.66	0.0	0.04	13.69	0.00	2.219	8.32	0.00	2.4	97.6	0.0	-1.13	0.56	0.81	3.18	3.8	0.003	0.67	0.0	0.04	15.22	0.00	2.241	7.55	0.60	1.0	99.0	0.0	1.88	0.98	0.55	0.81	2.07	3211	415	1	0	1	0	0	logfile
✔	7PLV	13503	2023-09-30	2021-09-01	3.5	4.06	3.57	3.5	0.005	0.81	0.0	0.05	14.95	0.01	1.322	4.61	0.00	0.4	99.6	0.0	-1.54	0.91	0.83	3.00	3.5	0.003	0.64	0.0	0.04	15.42	0.00	2.146	7.79	0.09	1.0	99.0	0.0	1.80	0.72	0.92	0.86	2.57	10139	1263	5	0	3	0	0	logfile
✔	7XoP	33355	2023-09-27	2022-05-01	3.2	3.56	3.01	3.4	0.003	0.49	0.0	0.04	11.43	0.00	2.190	8.30	0.00	1.1	98.9	0.0	2.31	0.56	0.86	3.54	3.4	0.003	0.54	0.0	0.04	13.35	0.00	2.187	9.96	0.25	1.0	99.0	0.0	1.87	0.44	0.59	0.89	2.89	3855	524	1	0	0	0	0	logfile
✔	8G7L	29815	2023-09-28	2023-02-16	2.5	2.66	2.66	2.7	0.008	1.14	0.0	0.06	13.34	0.01	2.287	1.63	0.79	0.6	99.4	0.0	1.52	0.73	0.83	2.54	2.7	0.004	0.58	0.0	0.04	14.59	0.00	2.184	5.19	0.44	1.0	99.0	0.0	1.32	0.30	0.72	0.84	2.45	55510	7378	28	0	42	0	0	logfile
✔	7QV5	14167	2023-09-28	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.35	0.0	0.06	12.33	0.00	2.576	1.08	0.00	1.0	99.0	0.0	-1.49	0.87	0.50	0.90	6.84	5562	342	27	0	18	0	2997	logfile
✔	7UG0	26482	2023-09-27	2022-03-23	2.55	3.24	2.49	3.1	0.002	0.45	0.0	0.04	10.60	0.00	2.287	2.34	0.00	1.0	99.0	0.0	2.00	0.56	0.90	3.59	3.0	0.003	0.48	0.0	0.04	12.53	0.00	2.211	4.52	0.62	1.0	99.0	0.0	3.92	1.26	0.53	0.87	2.10	3126	418	1	0	3	4	0	logfile
✔	7T4N	25681	2023-09-28	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.49	0.0	0.04	16.48	0.00	2.284	5.93	1.53	1.0	99.0	0.0	1.61	0.24	0.66	0.87	3.71	6476	803	2	0	0	0	0	logfile
✔	7Y5G	33619	2023-09-27	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.53	0.0	0.04	15.35	0.00	2.030	5.10	0.38	1.0	99.0	0.0	1.53	0.65	0.65	0.75	0.28	4736	604	4	0	6	0	0	logfile
✔	7o0V	12680	2023-09-28	2021-03-27	2.5	2.50	—	2.4	0.018	4.38	0.0	0.06	24.68	0.01	2.117	1.81	0.31	1.2	98.8	0.0	1.63	0.82	0.86	5.41	2.4	0.007	1.84	0.0	0.04	22.08	0.00	2.013	8.44	1.38	1.0	99.0	0.0	3.41	0.50	0.84	0.89	4.41	55475	4947	238	0	317	489	0	logfile
✔	7ZDi	14650	2023-09-30	2022-03-29	2.9	3.06	2.82	3.1	0.013	2.74	0.0	0.04	16.49	0.01	2.378	3.63	0.00	0.9	99.1	0.0	1.10	0.64	0.84	5.30	3.1	0.005	1.48	0.0	0.04	16.61	0.00	2.159	5.01	0.37	1.0	99.0	0.0	3.01	0.30	0.69	0.87	4.42	10284	976	38	0	42	0	0	logfile
✔	8BM1	16117	2023-09-30	2022-11-10	2.7	2.71	2.68	2.6	0.004	0.73	0.0	0.05	15.29	0.00	1.948	13.36	0.81	1.8	98.1	0.1	1.10	0.82	0.83	2.93	2.6	0.004	0.61	0.0	0.04	16.18	0.00	2.065	10.98	1.16	1.0	99.0	0.0	1.12	0.39	0.84	0.88	2.99	61416	8008	56	0	42	2056	0	logfile

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