Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y81	33677	2023-04-22	2022-06-22	2.54	2.77	2.62	2.8	0.006	0.86	0.0	0.06	19.33	0.01	2.034	7.10	2.91	1.2	98.8	0.0	-1.88	0.65	0.80	3.30	2.8	0.004	0.58	0.0	0.04	18.95	0.00	1.901	15.33	3.28	1.2	98.8	0.0	0.15	0.30	0.66	0.82	3.85	11044	1223	4	55	5	0	0	logfile
✔	7T6o	25721	2023-04-25	2021-12-14	2.6	2.80	—	2.9	0.004	0.79	0.0	0.05	14.06	0.01	2.302	2.54	0.00	1.3	98.7	0.0	-1.56	0.67	0.84	3.82	2.8	0.002	0.51	0.0	0.04	16.16	0.00	2.191	6.19	1.19	1.2	98.8	0.0	1.76	0.90	0.68	0.87	3.34	19412	2424	4	0	0	0	0	logfile
✔	8EHG	28147	2023-04-21	2022-09-14	2.24	2.24	2.25	2.3	0.003	0.53	0.0	0.04	16.09	0.00	2.291	4.70	1.44	1.5	98.5	0.0	1.13	0.74	0.83	5.20	2.4	0.003	0.55	0.0	0.04	16.76	0.00	2.229	4.04	2.16	1.2	98.8	0.0	1.61	0.20	0.72	0.84	5.39	10472	1372	4	0	0	0	0	logfile
✔	7oo8	13007	2023-04-23	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.002	0.48	0.0	0.04	14.80	0.00	2.290	9.85	0.20	1.2	98.8	0.0	2.54	0.44	0.65	0.79	2.22	13923	1827	7	0	0	0	0	logfile
✔	7BYM	30245	2023-04-24	2020-04-23	3.1	3.49	—	3.6	0.009	1.24	0.0	0.05	19.11	0.01	1.997	23.21	8.67	1.4	98.4	0.2	-0.33	0.46	0.48	1.34	3.6	0.003	0.59	0.0	0.03	17.04	0.00	2.172	9.42	0.18	1.2	98.7	0.1	2.88	0.92	0.53	0.73	1.51	16411	2000	16	0	11	4	0	logfile
✔	7QET	13940	2023-04-25	2021-12-03	2.1	2.53	2.11	2.3	0.006	0.88	0.0	0.04	13.42	0.00	2.140	1.99	2.38	2.2	97.8	0.0	1.49	0.82	0.90	3.95	2.3	0.003	0.54	0.0	0.04	14.62	0.00	2.186	3.41	1.64	1.2	98.8	0.0	3.47	0.37	0.82	0.92	3.57	19205	2256	36	0	60	305	0	logfile
✔	7RH9	24458	2023-04-23	2021-07-16	2.61	2.09	—	2.5	0.003	0.57	0.0	0.04	13.27	0.01	2.214	5.79	0.00	1.3	98.7	0.0	1.30	0.64	0.84	4.07	2.5	0.002	0.48	0.0	0.04	15.63	0.00	2.149	8.70	0.81	1.2	98.8	0.0	2.64	0.90	0.63	0.86	4.00	14680	1792	4	0	0	0	0	logfile
✔	7ooA	13008	2023-04-23	2021-05-27	2.7	2.63	2.63	2.6	0.005	0.66	0.0	0.05	15.27	0.00	2.256	5.81	0.00	0.4	99.6	0.0	2.71	0.71	0.86	4.30	2.6	0.003	0.47	0.0	0.04	16.81	0.00	2.229	5.62	0.81	1.2	98.8	0.0	1.78	1.11	0.70	0.88	3.88	15610	1834	14	0	35	0	0	logfile
✔	7P5M	13201	2023-04-20	2021-07-14	3.92	3.54	3.67	3.7	0.003	0.60	0.0	0.04	13.68	0.00	2.209	8.88	0.00	0.9	99.1	0.0	3.52	0.51	0.77	1.01	3.7	0.003	0.63	0.0	0.04	16.50	0.00	2.182	9.28	0.31	1.2	98.8	0.0	3.94	0.44	0.52	0.77	1.01	6204	788	8	0	12	0	0	logfile
✔	8F4R	28857	2023-04-26	2022-11-11	3.06	3.36	3.18	3.3	0.004	0.56	0.0	0.04	10.45	0.00	2.212	7.54	3.22	1.2	98.7	0.0	1.85	0.75	0.81	2.80	3.3	0.003	0.52	0.0	0.04	14.45	0.00	2.078	7.71	0.28	1.2	98.8	0.0	1.93	1.23	0.72	0.87	2.65	23675	3097	4	0	1	0	0	logfile
✔	8E2J	27838	2023-04-20	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.53	0.0	0.03	17.85	0.00	1.995	13.05	0.00	1.2	98.8	0.0	3.38	1.71	0.45	0.67	1.22	6012	346	4	0	114	0	2694	logfile
✔	6YSZ	10911	2023-04-23	2020-04-23	3.6	2.67	—	3.8	0.004	0.56	0.0	0.04	15.54	0.00	2.295	11.00	0.38	2.9	97.1	0.0	-1.45	0.80	0.81	1.22	3.9	0.003	0.58	0.0	0.04	17.83	0.00	2.145	9.80	0.81	1.2	98.8	0.0	1.97	1.02	0.80	0.79	1.01	15192	1896	6	0	0	0	0	logfile
✔	7Vo9	32049	2023-04-20	2021-10-13	3.8	3.98	3.82	3.8	0.011	1.58	1.0	0.09	23.08	0.00	2.124	6.40	0.76	0.8	99.2	0.0	2.89	0.75	0.63	0.88	3.9	0.005	0.73	0.0	0.04	27.04	0.00	1.910	21.50	1.52	1.2	98.8	0.0	0.77	1.11	0.78	0.68	0.19	5711	524	10	86	12	0	0	logfile
✔	7V0Q	26948	2023-04-20	2022-05-10	2.5	2.22	2.45	2.2	0.004	0.61	0.0	0.04	18.36	0.00	2.227	3.48	2.15	1.1	98.9	0.0	1.64	0.60	0.89	5.35	2.2	0.003	0.57	0.0	0.04	18.66	0.00	2.150	4.54	2.86	1.2	98.8	0.0	1.61	0.49	0.59	0.89	5.64	5301	658	1	0	0	127	0	logfile
✔	7SP8	25368	2023-04-20	2021-11-02	2.7	2.98	—	2.9	0.008	0.77	0.0	0.05	14.24	0.00	2.204	5.45	0.16	1.5	98.5	0.0	2.53	0.72	0.82	2.37	2.9	0.003	0.59	0.0	0.04	16.97	0.00	1.936	8.01	1.90	1.2	98.8	0.0	1.82	0.62	0.75	0.88	3.41	6090	742	4	0	5	0	0	logfile
✔	7oFH	12874	2023-04-28	2021-05-05	2.7	2.70	—	2.7	0.010	1.60	31.0	0.11	16.73	0.01	2.236	13.88	3.90	12.3	87.6	0.1	-4.46	0.71	0.83	1.69	2.7	0.003	0.65	0.0	0.05	17.81	0.00	2.183	4.89	2.99	1.2	98.8	0.0	-0.21	1.34	0.73	0.84	2.19	27135	3465	30	0	30	0	0	logfile
✔	6QFA	4542	2023-04-24	2019-01-09	2.49	2.59	2.43	2.6	0.006	0.80	0.0	0.06	10.81	0.01	1.973	5.30	0.00	1.8	98.2	0.0	-2.14	0.73	0.85	4.50	2.6	0.003	0.58	0.0	0.04	14.45	0.00	2.191	6.35	1.22	1.2	98.8	0.0	1.27	1.18	0.75	0.88	3.83	18755	2270	20	0	35	0	0	logfile
✔	8CY8	27070	2023-04-28	2022-05-23	2.94	3.19	3.01	3.2	0.011	0.79	0.0	0.06	12.77	0.01	2.171	3.51	0.00	0.6	99.4	0.0	1.60	0.74	0.87	4.77	3.2	0.002	0.51	0.0	0.04	15.62	0.00	2.156	4.38	1.06	1.2	98.8	0.0	2.15	0.92	0.72	0.87	3.60	28800	3744	23	0	12	0	0	logfile
✔	7VLT	32026	2023-04-21	2021-10-05	3.1	3.37	3.11	3.4	0.004	0.60	0.0	0.04	12.71	0.00	1.963	3.24	2.19	1.9	98.1	0.0	0.12	0.67	0.83	2.64	3.4	0.003	0.55	0.0	0.04	15.16	0.00	2.010	8.03	0.00	1.3	98.7	0.0	2.53	1.87	0.66	0.83	2.02	9024	1145	1	0	6	0	0	logfile
✔	7X5A	33013	2023-04-21	2022-03-04	3.01	3.27	3.09	3.2	0.003	0.53	0.0	0.04	20.34	0.00	2.182	3.74	0.00	1.7	98.3	0.0	0.22	0.70	0.81	3.38	3.2	0.003	0.53	0.0	0.04	21.82	0.00	2.206	7.33	0.54	1.3	98.7	0.0	0.31	0.39	0.73	0.86	3.17	10686	1083	12	104	0	0	0	logfile

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