Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A2U	15107	2023-04-23	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.59	0.0	0.04	16.64	0.00	2.155	3.93	0.52	1.3	98.7	0.0	1.13	1.06	0.73	0.88	6.00	15022	1830	15	0	15	512	0	logfile
✔	7QB9	13882	2023-04-20	2021-11-18	3.1	3.36	3.16	3.4	0.008	1.01	0.0	0.06	13.20	0.01	2.291	2.92	0.00	3.5	96.5	0.0	-2.92	0.56	0.81	2.83	3.4	0.002	0.51	0.0	0.04	14.11	0.00	2.198	4.43	0.19	1.3	98.7	0.0	2.35	0.35	0.54	0.82	2.24	5419	598	4	0	26	0	0	logfile
✔	8F7R	28908	2023-04-22	2022-11-20	3.28	2.92	3.26	3.4	0.004	0.84	0.0	0.07	7.82	0.01	2.260	4.20	0.00	1.5	98.5	0.0	-0.71	0.54	0.70	1.83	3.3	0.003	0.56	0.0	0.04	14.02	0.00	2.165	11.40	0.24	1.3	98.7	0.0	1.41	0.81	0.57	0.79	2.34	11697	1443	11	0	12	0	0	logfile
✔	7X5A	33013	2023-04-21	2022-03-04	3.01	3.27	3.09	3.2	0.003	0.53	0.0	0.04	20.34	0.00	2.182	3.74	0.00	1.7	98.3	0.0	0.22	0.70	0.81	3.38	3.2	0.003	0.53	0.0	0.04	21.82	0.00	2.206	7.33	0.54	1.3	98.7	0.0	0.31	0.39	0.73	0.86	3.17	10686	1083	12	104	0	0	0	logfile
✔	8D1G	27129	2023-04-24	2022-05-27	2.07	2.29	2.10	2.3	0.006	0.69	0.0	0.04	19.81	0.00	2.207	13.54	0.66	1.2	98.8	0.0	1.81	0.74	0.85	5.81	2.3	0.006	0.68	0.0	0.05	17.43	0.01	2.142	7.81	0.52	1.3	98.7	0.0	1.57	0.91	0.71	0.86	5.67	16201	1735	15	0	61	620	0	logfile
✔	6YoV	10864	2023-04-22	2020-04-15	3.42	4.61	—	3.9	0.011	1.14	0.0	0.07	25.22	0.01	2.395	0.86	0.00	0.0	100.0	0.0	0.87	0.88	0.82	1.84	3.8	0.004	0.70	0.0	0.04	26.21	0.00	2.079	11.49	0.43	1.3	98.7	0.0	2.30	1.24	0.88	0.84	2.16	12298	898	18	262	8	0	0	logfile
✔	7VLT	32026	2023-04-21	2021-10-05	3.1	3.37	3.11	3.4	0.004	0.60	0.0	0.04	12.71	0.00	1.963	3.24	2.19	1.9	98.1	0.0	0.12	0.67	0.83	2.64	3.4	0.003	0.55	0.0	0.04	15.16	0.00	2.010	8.03	0.00	1.3	98.7	0.0	2.53	1.87	0.66	0.83	2.02	9024	1145	1	0	6	0	0	logfile
✔	7oo6	13006	2023-04-23	2021-05-26	3.1	2.92	2.88	3.0	0.004	0.57	0.0	0.04	11.12	0.00	2.327	9.05	0.00	1.5	98.5	0.0	2.48	0.63	0.80	2.67	3.0	0.003	0.42	0.0	0.04	13.98	0.00	2.360	8.12	0.20	1.3	98.7	0.0	2.26	1.12	0.63	0.82	2.27	14546	1827	14	0	14	0	0	logfile
✔	6N26	9324	2023-04-22	2018-11-12	3.0	3.29	—	3.2	0.008	0.83	0.0	0.05	9.20	0.01	2.277	2.55	0.00	3.2	96.8	0.0	-6.12	0.72	0.83	4.16	3.2	0.004	0.68	0.0	0.04	15.84	0.00	2.213	7.34	2.49	1.3	98.7	0.0	0.61	0.73	0.73	0.85	2.78	13190	1595	5	0	0	0	0	logfile
✔	6XL6	22235	2023-04-20	2020-06-28	3.0	3.41	—	3.3	0.005	0.68	0.0	0.05	20.19	0.00	2.257	5.23	0.00	0.0	100.0	0.0	-1.93	0.76	0.83	2.94	3.3	0.003	0.53	0.0	0.04	21.18	0.00	2.275	6.47	2.65	1.3	98.7	0.0	0.64	1.38	0.74	0.83	2.39	5456	536	6	46	4	0	0	logfile
✔	7XR4	33407	2023-04-21	2022-05-09	3.4	3.26	3.35	3.4	0.007	0.94	0.0	0.05	14.23	0.00	2.304	10.91	0.29	2.1	97.9	0.0	1.68	0.73	0.85	1.65	3.4	0.003	0.54	0.0	0.04	15.09	0.00	2.237	10.24	0.19	1.3	98.7	0.0	3.19	1.07	0.71	0.85	1.38	10026	1278	6	0	27	0	0	logfile
✔	8A2R	15104	2023-04-23	2022-06-06	2.17	2.31	2.13	2.2	0.005	0.67	0.0	0.04	13.67	0.00	1.880	2.75	0.65	2.5	97.5	0.0	-1.52	0.72	0.86	5.94	2.2	0.002	0.57	0.0	0.04	16.82	0.00	1.938	3.48	0.90	1.4	98.6	0.0	1.29	1.70	0.73	0.90	5.61	14990	1830	15	0	15	480	0	logfile
✔	8A2S	15105	2023-04-23	2022-06-06	2.22	2.37	2.18	2.3	0.009	0.68	0.0	0.05	14.10	0.01	1.758	3.33	0.64	1.9	98.1	0.0	-1.13	0.71	0.87	6.45	2.3	0.003	0.60	0.0	0.05	16.41	0.00	1.907	4.99	0.84	1.4	98.6	0.0	0.79	0.82	0.72	0.89	5.97	15141	1835	15	0	15	591	0	logfile
✔	8E2E	27833	2023-04-27	2022-08-15	1.98	2.09	2.04	2.1	0.007	0.74	0.0	0.04	14.15	0.01	2.114	9.86	1.48	3.7	96.3	0.0	-0.81	0.69	0.86	6.40	2.1	0.004	0.60	0.0	0.04	14.44	0.00	2.034	8.11	1.48	1.4	98.6	0.0	2.35	0.31	0.69	0.86	6.30	26633	1654	4	0	0	377	13332	logfile
✔	8iKA	35507	2023-04-25	2023-02-28	2.75	2.89	2.81	2.9	0.008	1.22	0.0	0.07	12.95	0.02	2.225	4.42	0.00	1.5	98.5	0.0	-0.45	0.82	0.88	4.57	2.9	0.005	0.55	0.0	0.04	16.79	0.00	2.145	3.77	1.06	1.4	98.6	0.0	1.61	1.50	0.82	0.90	4.07	122040	15900	60	0	0	0	0	logfile
✔	8BC2	15960	2023-04-24	2022-10-14	2.6	2.43	2.67	2.8	0.012	1.66	0.0	0.10	18.31	0.03	2.311	3.08	13.21	4.2	95.8	0.0	-4.52	0.75	0.84	4.09	2.7	0.003	0.56	0.0	0.04	16.80	0.00	2.053	4.98	1.26	1.4	98.6	0.0	1.88	1.05	0.76	0.83	4.52	16770	2180	20	0	0	460	0	logfile
✔	7oNL	12997	2023-04-23	2021-05-25	3.9	3.35	3.58	3.6	0.002	0.38	0.0	0.04	9.17	0.00	2.180	5.51	0.41	1.5	98.5	0.0	2.97	0.64	0.80	2.02	3.6	0.003	0.63	0.0	0.04	13.87	0.00	2.200	9.71	0.74	1.4	98.6	0.0	2.16	0.57	0.64	0.81	1.09	13923	1827	7	0	0	0	0	logfile
✔	6ZiK	11227	2023-04-20	2020-06-26	3.66	3.14	3.54	3.4	0.005	0.73	0.0	0.04	14.23	0.00	2.134	10.04	0.00	2.0	98.0	0.0	1.08	0.55	0.78	2.12	3.4	0.003	0.59	0.0	0.04	16.45	0.00	2.197	9.40	0.13	1.4	98.6	0.0	1.92	0.44	0.56	0.78	1.39	7735	1048	11	0	0	0	0	logfile
✔	6T24	10366	2023-04-23	2019-10-07	3.7	3.44	3.63	3.6	0.049	3.18	0.0	0.23	14.36	0.01	2.104	2.74	0.00	0.5	99.5	0.0	0.74	0.68	0.80	2.64	3.5	0.003	1.54	0.0	0.04	17.29	0.00	1.619	16.29	0.32	1.4	98.6	0.0	0.89	1.42	0.69	0.82	2.30	14910	1855	10	0	20	0	0	logfile
✔	7RHL	24465	2023-04-23	2021-07-17	3.03	2.43	—	2.7	0.003	0.56	0.0	0.04	13.97	0.00	2.217	5.43	0.00	1.5	98.5	0.0	1.66	0.63	0.84	3.54	2.7	0.005	0.56	0.0	0.04	15.12	0.00	2.189	8.61	0.25	1.4	98.6	0.0	2.63	0.37	0.63	0.86	3.73	15371	1932	4	0	0	0	0	logfile

• ← previous
• Page 7 of 372
• next →