Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CKY	16706	2023-08-11	2023-02-16	2.6	3.00	2.57	2.9	0.004	0.82	0.0	0.05	12.58	0.01	1.934	7.36	0.54	0.5	99.5	0.0	0.20	0.62	0.77	5.97	2.9	0.004	0.56	0.0	0.04	17.98	0.00	2.163	8.97	2.17	0.9	99.1	0.0	1.82	0.63	0.62	0.79	4.63	10338	1344	12	0	0	0	0	logfile
✔	7SJ1	25152	2023-08-09	2021-10-15	2.9	3.13	—	3.3	0.011	1.01	0.0	0.04	16.65	0.00	2.351	8.63	0.61	2.1	97.9	0.0	2.80	0.58	0.77	3.41	3.3	0.003	0.66	0.0	0.04	16.11	0.00	2.239	9.61	0.61	0.9	99.1	0.0	2.89	1.09	0.51	0.79	2.21	6463	784	9	0	34	1	0	logfile
✔	6ZHX	11220	2023-08-12	2020-06-24	2.5	3.01	2.43	2.7	0.005	0.92	0.0	0.06	26.86	0.01	2.203	2.63	0.46	1.0	99.0	0.0	0.63	0.88	0.90	5.80	2.7	0.005	0.60	0.0	0.04	28.52	0.00	2.180	4.72	0.62	0.9	99.1	0.0	2.83	0.45	0.89	0.92	4.54	12313	784	22	290	0	146	0	logfile
✔	7Y5H	33620	2023-08-09	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	4.1	0.003	0.59	0.0	0.04	15.31	0.00	2.037	6.90	0.57	0.9	99.1	0.0	1.70	1.10	0.66	0.80	1.37	4704	600	4	0	4	0	0	logfile
✔	8D14	27115	2023-08-11	2022-05-26	2.51	2.45	2.49	2.6	0.004	0.57	0.0	0.05	13.46	0.00	2.064	5.73	0.32	1.1	98.9	0.0	1.45	0.66	0.87	4.65	2.5	0.003	0.59	0.0	0.04	15.95	0.00	1.892	4.58	0.85	0.9	99.1	0.0	1.26	0.36	0.65	0.88	4.98	9225	1113	9	0	9	426	0	logfile
✔	7NK9	12434	2023-08-15	2021-02-17	2.9	3.29	—	3.2	0.003	0.50	0.0	0.04	13.03	0.00	2.087	6.80	0.00	2.9	97.1	0.0	1.61	0.68	0.86	1.78	3.2	0.004	0.55	0.0	0.04	15.16	0.00	2.081	6.69	1.39	0.9	99.1	0.0	3.96	0.45	0.68	0.88	1.31	18081	1225	14	0	0	0	9158	logfile
✔	6XSS	22305	2023-08-10	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.80	0.0	0.04	16.96	0.00	2.251	16.62	0.49	0.9	99.1	0.0	2.42	1.33	0.74	0.79	0.26	8048	1040	4	0	0	0	0	logfile
✔	8D1K	27133	2023-08-14	2022-05-27	2.28	2.51	2.43	2.5	0.013	1.28	0.0	0.07	18.10	0.01	2.287	6.59	2.65	1.1	98.9	0.0	0.89	0.70	0.91	4.11	2.5	0.004	0.58	0.0	0.04	17.05	0.00	2.240	5.19	1.59	0.9	99.1	0.0	1.18	0.37	0.66	0.89	4.00	16305	1880	10	0	45	0	0	logfile
✔	7SCA	25031	2023-08-10	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.28	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	6ZBL	11157	2023-08-24	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.002	0.46	0.0	0.03	15.45	0.00	2.035	3.28	0.00	1.0	99.0	0.0	4.27	1.71	0.88	0.82	1.00	39074	2326	4	0	0	0	19788	logfile
✔	7ZDi	14650	2023-08-11	2022-03-29	2.9	3.06	2.82	3.1	0.013	2.74	0.0	0.04	16.49	0.01	2.378	3.63	0.00	0.9	99.1	0.0	1.10	0.64	0.84	5.30	3.1	0.005	1.48	0.0	0.04	16.61	0.00	2.159	5.01	0.37	1.0	99.0	0.0	3.01	0.30	0.69	0.87	4.42	10284	976	38	0	42	0	0	logfile
✔	8G92	29860	2023-08-09	2023-02-21	3.6	3.86	3.44	3.8	0.005	0.66	0.0	0.04	13.69	0.00	2.219	8.32	0.00	2.4	97.6	0.0	-1.13	0.56	0.81	3.18	3.8	0.003	0.67	0.0	0.04	15.22	0.00	2.241	7.55	0.60	1.0	99.0	0.0	1.88	0.98	0.55	0.81	2.07	3211	415	1	0	1	0	0	logfile
✔	7o0V	12680	2023-08-10	2021-03-27	2.5	2.50	—	2.4	0.018	4.38	0.0	0.06	24.68	0.01	2.117	1.81	0.31	1.2	98.8	0.0	1.63	0.82	0.86	5.41	2.4	0.007	1.84	0.0	0.04	22.08	0.00	2.013	8.44	1.38	1.0	99.0	0.0	3.41	0.50	0.84	0.89	4.41	55475	4947	238	0	317	489	0	logfile
✔	7QV5	14167	2023-08-09	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.35	0.0	0.06	12.33	0.00	2.576	1.08	0.00	1.0	99.0	0.0	-1.49	0.87	0.50	0.90	6.84	5562	342	27	0	18	0	2997	logfile
✔	8CV2	27006	2023-08-11	2022-05-17	2.44	2.61	2.44	2.8	0.003	0.53	0.0	0.04	14.13	0.00	2.281	3.79	0.00	1.6	98.4	0.0	1.88	0.64	0.85	1.65	2.8	0.002	0.51	0.0	0.04	14.93	0.00	2.275	4.33	1.29	1.0	99.0	0.0	3.10	0.26	0.60	0.83	1.62	9882	1299	6	0	6	0	0	logfile
✔	8CoM	16777	2023-08-11	2023-02-28	3.3	3.62	3.41	3.7	0.004	0.57	0.0	0.03	28.74	0.00	2.228	8.93	0.34	1.7	98.3	0.0	2.02	0.70	0.82	1.34	3.7	0.003	0.54	0.0	0.03	28.68	0.00	2.188	8.88	0.69	1.0	99.0	0.0	2.63	0.92	0.68	0.80	1.13	10705	708	10	254	0	0	0	logfile
✔	7XoK	33350	2023-08-09	2022-05-01	2.7	3.82	2.75	3.2	0.003	0.50	0.0	0.04	13.15	0.00	2.160	10.61	0.00	1.1	98.9	0.0	2.23	0.87	0.86	1.97	3.2	0.003	0.57	0.0	0.04	14.79	0.00	2.108	12.44	0.34	1.0	99.0	0.0	2.10	0.30	0.87	0.86	1.75	53970	7336	14	0	0	0	0	logfile
✔	7MQF	23945	2023-08-17	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.43	0.00	2.255	2.60	0.00	1.0	99.0	0.0	1.00	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	7XoP	33355	2023-08-09	2022-05-01	3.2	3.56	3.01	3.4	0.003	0.49	0.0	0.04	11.43	0.00	2.190	8.30	0.00	1.1	98.9	0.0	2.31	0.56	0.86	3.54	3.4	0.003	0.54	0.0	0.04	13.35	0.00	2.187	9.96	0.25	1.0	99.0	0.0	1.87	0.44	0.59	0.89	2.89	3855	524	1	0	0	0	0	logfile
✔	8G7L	29815	2023-08-10	2023-02-16	2.5	2.66	2.66	2.7	0.008	1.14	0.0	0.06	13.34	0.01	2.287	1.63	0.79	0.6	99.4	0.0	1.52	0.73	0.83	2.54	2.7	0.004	0.58	0.0	0.04	14.59	0.00	2.184	5.19	0.44	1.0	99.0	0.0	1.32	0.30	0.72	0.84	2.45	55510	7378	28	0	42	0	0	logfile

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