Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PoM	20416	2022-11-29	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.24	0.0	0.06	21.39	0.01	1.928	58.97	0.00	0.0	0.0	0.0	—	1.75	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7URi	26713	2022-11-29	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.42	0.0	0.07	23.80	0.01	2.074	24.37	0.00	0.0	0.0	0.0	—	1.69	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	6UES	20755	2022-11-29	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7URM	26714	2022-11-29	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.17	0.0	0.05	22.99	0.01	1.988	30.29	0.00	0.0	0.0	0.0	—	1.70	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	6UET	20756	2022-11-29	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	15.67	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.96	0.0	0.05	22.24	0.01	1.829	50.36	0.00	0.0	0.0	0.0	—	0.76	0.66	0.81	—	3869	0	1	119	1	0	1291	logfile
✔	7L7H	23212	2022-11-29	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.005	0.99	0.0	0.06	16.55	0.00	2.113	18.49	1.96	32.1	67.9	0.0	-4.69	0.91	0.51	0.65	—	2430	352	8	0	0	0	0	logfile
✔	5LiJ	4054	2022-11-29	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.12	0.0	0.04	9.66	0.00	2.166	11.83	0.00	32.0	68.0	0.0	-5.62	1.49	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	7C1D	30269	2022-11-29	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.90	0.00	2.239	18.63	0.52	24.5	75.5	0.0	-4.57	2.82	0.39	0.75	2.42	2034	306	6	0	0	0	0	logfile
✔	7DWV	30887	2022-11-29	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	17.63	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.73	0.0	0.05	17.17	0.00	2.189	19.08	0.00	23.2	76.8	0.0	-5.96	1.50	0.41	0.75	2.79	2064	258	6	0	0	0	0	logfile
✔	7M62	23687	2022-11-29	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile
✔	6XTB	10618	2022-11-29	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✔	6RTB	4996	2022-11-29	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.006	0.85	0.0	0.05	16.16	0.00	2.105	17.65	0.65	22.1	77.9	0.0	-4.34	0.89	0.63	0.81	4.18	4681	699	10	0	0	0	0	logfile
✔	7KWZ	23059	2022-11-29	2020-12-02	3.2	3.41	—	3.4	0.006	0.80	0.0	0.05	12.48	0.00	2.271	14.29	0.00	7.3	92.7	0.0	-5.51	0.47	0.81	4.47	3.4	0.008	0.97	0.0	0.05	15.62	0.01	2.151	21.09	1.14	20.0	80.0	0.0	-5.58	1.07	0.49	0.85	4.11	4695	695	5	0	0	0	0	logfile
✔	6VW2	21410	2022-11-29	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.40	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	7V4B	31706	2022-11-29	2021-08-12	3.1	3.04	—	3.1	0.006	0.60	0.0	0.05	14.55	0.00	2.375	15.32	0.00	13.2	86.8	0.0	-5.99	0.41	0.69	2.66	3.1	0.008	0.78	0.0	0.05	17.31	0.00	2.146	10.95	0.60	18.9	81.1	0.0	-4.89	0.56	0.41	0.69	2.54	3336	480	6	0	0	0	0	logfile
✔	7JLX	22383	2022-11-29	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7FiJ	31599	2022-11-29	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.007	0.96	0.0	0.05	12.41	0.00	2.193	14.37	2.50	18.3	81.7	0.0	-2.16	0.76	0.61	0.55	2.86	3061	561	1	0	0	0	0	logfile
✔	7DA4	30622	2022-11-29	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.95	0.0	0.04	11.56	0.00	2.266	19.19	0.00	18.3	81.7	0.0	-5.96	3.11	0.36	0.58	—	507	66	3	0	0	0	0	logfile
✔	7VZF	32227	2022-11-29	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.83	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.91	0.0	0.05	18.86	0.00	2.102	13.65	4.61	18.2	81.8	0.0	-4.30	1.96	0.37	0.63	0.33	2628	363	3	0	0	0	0	logfile
✔	7V47	31702	2022-11-29	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	3.0	0.004	0.69	0.0	0.06	17.00	0.00	2.426	6.32	3.25	17.5	82.5	0.0	-4.25	0.34	0.43	0.79	5.70	2484	366	6	0	0	0	0	logfile

• Page 1 of 23
• next →