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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oEF | 20020 | 2021-01-07 | 2019-03-27 | 3.8 | 3.98 | — | 3.8 | 0.007 | 1.67 | 0.0 | 0.07 | 11.76 | 0.01 | 2.376 | 3.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.47 | 0.78 | — | 3.8 | 0.006 | 1.18 | 0.0 | 0.05 | 5.88 | 0.00 | 2.195 | 7.70 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.48 | 0.79 | — | 51240 | 0 | 14 | 0 | 10248 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2021-01-05 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.77 | — | 3.3 | 0.007 | 0.89 | 0.0 | 0.04 | 21.25 | 0.01 | 1.834 | 37.21 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.33 | 0.87 | 0.82 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 5G2Y | 3332 | 2021-01-05 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.00 | 0.0 | 0.05 | 23.93 | 0.01 | 1.967 | 73.15 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.27 | 0.88 | 0.77 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 6o1o | 0454 | 2021-01-06 | 2019-02-21 | 3.8 | 4.00 | — | 3.6 | 0.008 | 1.55 | 0.0 | 0.07 | 15.00 | 0.01 | 2.295 | 4.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.72 | 0.70 | — | 3.6 | 0.013 | 1.79 | 0.0 | 0.07 | 14.18 | 0.00 | 1.994 | 33.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.72 | 0.76 | 0.75 | — | 15193 | 0 | 14 | 66 | 2757 | 0 | 0 | logfile |
✔ | 6X5i | 22051 | 2021-01-05 | 2020-05-26 | 4.3 | 4.27 | — | 4.0 | 0.061 | 3.17 | 210.0 | 0.20 | 28.86 | 0.00 | 2.206 | 29.57 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.70 | — | 4.0 | 0.010 | 1.57 | 210.0 | 0.14 | 27.11 | 0.00 | 1.555 | 68.00 | 0.00 | 0.0 | 0.0 | 0.0 | — | 4.23 | 0.68 | 0.74 | — | 4480 | 70 | 70 | 0 | 280 | 0 | 0 | logfile |
✔ | 6UET | 20756 | 2021-01-05 | 2019-09-23 | 4.1 | 4.91 | — | 5.1 | 0.010 | 1.58 | 0.0 | 0.07 | 17.24 | 0.02 | 1.977 | 4.64 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.62 | 0.73 | — | 5.0 | 0.007 | 0.97 | 0.0 | 0.05 | 22.88 | 0.01 | 1.754 | 51.75 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.64 | 0.78 | — | 3869 | 0 | 1 | 119 | 1 | 0 | 1291 | logfile |
✔ | 6oDJ | 20021 | 2021-01-06 | 2019-03-26 | 3.5 | 3.75 | — | 3.7 | 0.009 | 1.50 | 0.0 | 0.07 | 11.32 | 0.01 | 2.438 | 2.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.81 | — | 3.6 | 0.012 | 1.74 | 0.0 | 0.06 | 7.95 | 0.00 | 2.065 | 11.87 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.66 | 0.81 | 0.84 | — | 25415 | 0 | 17 | 0 | 5083 | 0 | 0 | logfile |
✔ | 6QYZ | 4680 | 2021-01-05 | 2019-03-10 | 4.6 | 2.98 | — | 6.0 | 0.009 | 1.14 | 0.0 | 0.04 | 24.59 | 0.01 | 1.934 | 53.60 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.53 | — | 2.9 | 0.006 | 1.16 | 0.0 | 0.07 | 28.21 | 0.01 | 2.052 | 71.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 4.55 | 0.73 | 0.67 | — | 7300 | 0 | 5 | 345 | 0 | 0 | 0 | logfile |
✔ | 6PoM | 20416 | 2021-01-05 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 17.29 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.28 | 0.0 | 0.06 | 21.79 | 0.01 | 1.928 | 59.11 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.80 | 0.74 | 0.80 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 6oEH | 20020 | 2021-01-07 | 2019-03-27 | 3.8 | 3.93 | — | 3.7 | 0.010 | 1.38 | 0.0 | 0.07 | 11.62 | 0.01 | 2.381 | 2.81 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.77 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.04 | 5.10 | 0.00 | 2.207 | 12.93 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.37 | 0.76 | — | 32900 | 0 | 14 | 0 | 6580 | 0 | 0 | logfile |
✔ | 6LHV | 0900 | 2021-01-05 | 2019-12-10 | 4.59 | 4.86 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 5.37 | 0.00 | 1.654 | 9.63 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.60 | — | 4.4 | 0.009 | 1.32 | 0.0 | 0.04 | 6.42 | 0.00 | 2.069 | 50.52 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.59 | 0.85 | 0.81 | — | 8456 | 0 | 3 | 0 | 1707 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2021-01-06 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.52 | 0.0 | 0.41 | 5.92 | 0.00 | 2.134 | 43.68 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.30 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 6LHW | 0901 | 2021-01-05 | 2019-12-10 | 4.84 | 5.29 | — | 4.6 | 0.008 | 1.37 | 1.0 | 0.05 | 5.28 | 0.00 | 1.530 | 14.43 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.64 | 0.56 | — | 4.7 | 0.007 | 1.25 | 0.0 | 0.04 | 6.28 | 0.00 | 2.051 | 40.84 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.27 | 0.83 | 0.79 | — | 7644 | 0 | 3 | 0 | 1541 | 0 | 0 | logfile |
✔ | 6S8F | 10120 | 2021-01-07 | 2019-07-09 | 4.0 | 4.88 | — | 3.9 | 0.007 | 1.25 | 0.0 | 0.06 | 11.73 | 0.01 | 1.859 | 6.71 | 0.80 | 9.6 | 90.3 | 0.1 | -4.38 | 0.88 | 0.77 | — | 3.8 | 0.043 | 3.07 | 71.0 | 0.11 | 15.46 | 0.02 | 1.585 | 164.45 | 0.00 | 52.8 | 44.6 | 2.6 | -7.94 | 2.37 | 0.89 | 0.87 | — | 33664 | 3530 | 4 | 0 | 1616 | 0 | 0 | logfile |
✔ | 6BWi | 7299 | 2021-01-06 | 2017-12-15 | 3.7 | 3.76 | — | 3.7 | 0.034 | 1.44 | 4.0 | 0.53 | 13.94 | 0.01 | 1.745 | 22.45 | 1.36 | 8.1 | 91.5 | 0.4 | -5.08 | 0.67 | 0.73 | 2.06 | 3.7 | 0.090 | 5.17 | 164.0 | 0.34 | 20.24 | 0.04 | 1.704 | 108.04 | 0.00 | 45.0 | 47.4 | 7.6 | -8.65 | 3.45 | 0.80 | 0.86 | 3.44 | 23491 | 2484 | 8 | 0 | 813 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2021-01-07 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.47 | 0.01 | 1.058 | 80.55 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.048 | 3.22 | 68.0 | 0.12 | 16.39 | 0.02 | 1.802 | 92.53 | 0.05 | 42.5 | 54.9 | 2.6 | -7.82 | 3.25 | 0.71 | 0.77 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 6oDY | 20024 | 2021-01-06 | 2019-03-27 | 3.8 | 3.40 | — | 3.2 | 0.010 | 1.59 | 18.0 | 0.11 | 15.38 | 0.01 | 1.264 | 18.14 | 3.15 | 16.6 | 83.3 | 0.0 | -5.02 | 0.66 | 0.62 | 1.16 | 3.2 | 0.030 | 3.15 | 10.0 | 0.14 | 16.90 | 0.02 | 1.773 | 94.04 | 0.09 | 37.4 | 61.3 | 1.2 | -7.16 | 1.52 | 0.67 | 0.67 | 2.49 | 28116 | 2832 | 6 | 0 | 1326 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2021-01-05 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 22.98 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.13 | 0.0 | 0.04 | 9.88 | 0.00 | 2.158 | 13.79 | 0.00 | 34.7 | 65.3 | 0.0 | -5.52 | 1.51 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VoC | 21260 | 2021-01-12 | 2020-01-30 | 3.1 | 3.49 | — | 20.0 | 0.006 | 0.90 | 0.0 | 0.06 | 8.74 | 0.01 | 0.163 | 459.01 | 0.00 | 1.9 | 98.1 | 0.0 | -1.94 | 0.19 | 0.06 | 0.07 | 3.2 | 0.021 | 3.00 | 492.0 | 0.15 | 17.70 | 0.01 | 1.369 | 190.59 | 0.04 | 29.4 | 67.4 | 3.1 | -5.84 | 7.93 | 0.26 | 0.12 | 0.01 | 214200 | 28560 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XTB | 10618 | 2021-01-05 | 2020-01-15 | 4.3 | 4.32 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 8.68 | 0.00 | 2.369 | 3.00 | 0.00 | 15.6 | 84.4 | 0.0 | -4.66 | 0.32 | 0.43 | — | 4.1 | 0.005 | 1.15 | 0.0 | 0.05 | 9.29 | 0.00 | 2.110 | 12.02 | 0.00 | 32.5 | 67.5 | 0.0 | -6.24 | 3.26 | 0.33 | 0.62 | — | 1161 | 235 | 1 | 0 | 0 | 0 | 0 | logfile |