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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8HD6 | 34670 | 2023-08-11 | 2022-11-03 | 3.73 | 4.52 | 3.73 | 3.2 | 0.002 | 0.54 | 0.0 | 0.02 | 14.51 | 0.00 | 1.969 | 2.97 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.78 | — | 3.3 | 0.008 | 0.86 | 0.0 | 0.05 | 19.11 | 0.01 | 1.720 | 28.98 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.31 | 0.91 | 0.82 | — | 8980 | 0 | 1 | 419 | 25 | 0 | 0 | logfile |
✔ | 7YG9 | 33812 | 2023-08-10 | 2022-07-11 | 2.68 | 3.47 | 2.76 | 2.8 | 0.005 | 0.51 | 0.0 | 0.03 | 15.21 | 0.00 | 1.804 | 13.88 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.86 | 0.81 | — | 2.8 | 0.006 | 0.61 | 0.0 | 0.04 | 15.60 | 0.00 | 1.866 | 18.12 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.39 | 0.92 | 0.92 | — | 8630 | 0 | 3 | 404 | 8 | 0 | 0 | logfile |
✔ | 7T6E | 25714 | 2023-08-09 | 2021-12-13 | 3.1 | 3.11 | — | 3.1 | 0.129 | 5.90 | 125.0 | 0.23 | 23.20 | 0.02 | 2.041 | 30.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.87 | — | 3.1 | 0.122 | 5.61 | 134.0 | 0.36 | 21.80 | 0.02 | 2.082 | 31.46 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.19 | 0.66 | 0.90 | — | 3480 | 0 | 60 | 0 | 300 | 0 | 0 | logfile |
✔ | 6oEF | 20020 | 2023-08-27 | 2019-03-27 | 3.8 | 3.98 | — | 3.8 | 0.007 | 1.67 | 0.0 | 0.07 | 11.76 | 0.01 | 2.376 | 3.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.47 | 0.78 | — | 3.8 | 0.006 | 1.21 | 0.0 | 0.05 | 6.00 | 0.00 | 2.197 | 8.15 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.49 | 0.80 | — | 51240 | 0 | 14 | 0 | 10248 | 0 | 0 | logfile |
✔ | 7XD4 | 33135 | 2023-08-11 | 2022-03-26 | 3.89 | 4.13 | — | 3.8 | 0.003 | 0.59 | 0.0 | 0.03 | 15.73 | 0.00 | 1.880 | 1.73 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.85 | 0.73 | — | 3.8 | 0.007 | 0.78 | 0.0 | 0.04 | 17.27 | 0.01 | 1.748 | 17.91 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.76 | 0.87 | 0.78 | — | 9062 | 0 | 1 | 423 | 28 | 0 | 0 | logfile |
✔ | 7YGC | 33815 | 2023-08-10 | 2022-07-11 | 2.65 | 3.28 | 2.77 | 2.9 | 0.007 | 0.50 | 0.0 | 0.03 | 14.76 | 0.00 | 1.778 | 12.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.83 | — | 2.9 | 0.004 | 0.56 | 0.0 | 0.03 | 15.40 | 0.00 | 1.934 | 13.86 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.48 | 0.92 | 0.90 | — | 8690 | 0 | 3 | 407 | 6 | 0 | 0 | logfile |
✔ | 7XSK | 33425 | 2023-08-12 | 2022-05-14 | 3.53 | 4.49 | 3.42 | 3.4 | 0.001 | 0.44 | 0.0 | 0.02 | 15.94 | 0.00 | 1.970 | 6.98 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.76 | — | 3.4 | 0.007 | 0.68 | 0.0 | 0.04 | 18.66 | 0.01 | 1.750 | 33.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.90 | 0.91 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 6oEH | 20020 | 2023-08-22 | 2019-03-27 | 3.8 | 3.93 | — | 3.7 | 0.010 | 1.38 | 0.0 | 0.07 | 11.62 | 0.01 | 2.381 | 2.81 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.77 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.04 | 5.09 | 0.00 | 2.203 | 12.28 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.52 | 0.40 | 0.80 | — | 32900 | 0 | 14 | 0 | 6580 | 0 | 0 | logfile |
✔ | 7ZFW | 14704 | 2023-08-13 | 2022-04-01 | 3.8 | 4.62 | 3.46 | 3.0 | 0.006 | 0.83 | 0.0 | 0.05 | 17.92 | 0.03 | 2.266 | 2.77 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.32 | 0.81 | — | 3.0 | 0.009 | 0.90 | 0.0 | 0.04 | 20.26 | 0.01 | 1.952 | 38.01 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.55 | 0.33 | 0.85 | — | 13188 | 0 | 1 | 615 | 0 | 0 | 0 | logfile |
✔ | 7XD3 | 33134 | 2023-08-11 | 2022-03-26 | 4.05 | 4.16 | — | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.04 | 0.00 | 1.960 | 1.21 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.85 | 0.74 | — | 3.9 | 0.007 | 0.80 | 0.0 | 0.04 | 17.14 | 0.01 | 1.675 | 17.13 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.77 | 0.87 | 0.81 | — | 9062 | 0 | 1 | 423 | 28 | 0 | 0 | logfile |
✔ | 7XD6 | 33137 | 2023-08-11 | 2022-03-26 | 2.84 | 3.25 | 2.83 | 3.0 | 0.005 | 0.74 | 0.0 | 0.04 | 15.28 | 0.00 | 1.975 | 1.30 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.86 | — | 3.0 | 0.005 | 0.66 | 0.0 | 0.04 | 16.14 | 0.00 | 1.883 | 7.41 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.32 | 0.88 | 0.89 | — | 9843 | 0 | 3 | 459 | 29 | 0 | 0 | logfile |
✔ | 8B3A | 15824 | 2023-08-09 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.009 | 1.89 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.077 | 6.38 | 29.0 | 0.43 | 20.27 | 0.05 | 1.653 | 309.17 | 6.67 | 46.7 | 8.0 | 45.3 | -10.71 | 2.72 | 0.41 | 0.54 | 3.39 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 7LQF | 23484 | 2023-08-09 | 2021-02-13 | 3.8 | 3.13 | — | 4.0 | 0.016 | 1.46 | 0.0 | 0.03 | 18.37 | 0.00 | 2.258 | 22.81 | 2.08 | 0.0 | 100.0 | 0.0 | -4.77 | 0.59 | 0.78 | 4.63 | 3.2 | 0.154 | 6.37 | 244.0 | 0.42 | 26.01 | 0.03 | 1.685 | 217.72 | 5.21 | 66.8 | 30.1 | 3.1 | -9.48 | 1.76 | 0.69 | 0.86 | 2.78 | 5376 | 512 | 64 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UUQ | 26800 | 2023-08-09 | 2022-04-28 | 3.1 | 3.45 | 2.98 | 3.3 | 0.014 | 2.95 | 0.0 | 0.06 | 20.39 | 0.01 | 1.865 | 20.35 | 0.00 | 0.0 | 100.0 | 0.0 | -9.31 | 0.68 | 0.85 | 2.95 | 3.3 | 0.118 | 4.71 | 11.0 | 0.23 | 25.10 | 0.02 | 1.642 | 53.03 | 1.10 | 65.5 | 31.5 | 3.0 | -10.63 | 0.67 | 0.73 | 0.90 | 3.96 | 4760 | 364 | 98 | 0 | 98 | 0 | 0 | logfile |
✔ | 7LQE | 23483 | 2023-08-09 | 2021-02-13 | 3.4 | 3.06 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.423 | 23.27 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.57 | 0.80 | 5.06 | 3.2 | 0.151 | 5.20 | 240.0 | 0.38 | 25.46 | 0.02 | 1.745 | 134.94 | 4.40 | 60.8 | 38.2 | 1.0 | -8.67 | 1.67 | 0.65 | 0.89 | 2.25 | 6048 | 576 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8F | 10120 | 2023-08-22 | 2019-07-09 | 4.0 | 4.88 | — | 3.9 | 0.007 | 1.26 | 0.0 | 0.06 | 11.68 | 0.01 | 1.859 | 6.71 | 0.80 | 9.6 | 90.3 | 0.1 | -4.38 | 0.88 | 0.77 | — | 3.9 | 0.042 | 2.95 | 51.0 | 0.11 | 17.89 | 0.02 | 1.488 | 187.53 | 3.85 | 53.1 | 44.5 | 2.4 | -7.96 | 2.39 | 0.90 | 0.88 | — | 33664 | 3530 | 4 | 0 | 1616 | 0 | 0 | logfile |
✔ | 6BWi | 7299 | 2023-08-17 | 2017-12-15 | 3.7 | 3.76 | — | 3.7 | 0.011 | 1.39 | 4.0 | 0.09 | 12.09 | 0.01 | 1.745 | 22.56 | 1.36 | 8.1 | 91.5 | 0.4 | -5.08 | 0.67 | 0.73 | 2.06 | 3.7 | 0.089 | 4.99 | 124.0 | 0.27 | 21.79 | 0.03 | 1.600 | 112.56 | 5.62 | 43.9 | 49.5 | 6.5 | -8.57 | 2.58 | 0.80 | 0.86 | 2.01 | 23491 | 2484 | 8 | 0 | 813 | 0 | 0 | logfile |
✔ | 7K0S | 22615 | 2023-08-12 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 13.91 | 0.00 | 2.069 | 9.69 | 0.95 | 7.8 | 92.0 | 0.2 | -0.12 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.18 | 225.0 | 0.13 | 17.01 | 0.02 | 1.355 | 135.88 | 0.00 | 44.3 | 52.4 | 3.3 | -7.51 | 2.27 | 0.84 | 0.82 | — | 115935 | 12896 | 8 | 0 | 3557 | 0 | 0 | logfile |
✔ | 7LQi | 23487 | 2023-08-10 | 2021-02-13 | 3.5 | 3.92 | — | 3.9 | 0.016 | 1.40 | 0.0 | 0.03 | 20.42 | 0.00 | 2.242 | 22.86 | 5.00 | 0.0 | 100.0 | 0.0 | -3.42 | 0.62 | 0.78 | 4.80 | 3.9 | 0.051 | 2.84 | 5.0 | 0.14 | 22.95 | 0.01 | 1.918 | 120.77 | 3.33 | 46.5 | 53.5 | 0.0 | -7.05 | 1.54 | 0.65 | 0.83 | 2.52 | 8400 | 800 | 100 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TDH | 25829 | 2023-08-13 | 2021-12-31 | 4.0 | 4.95 | 4.67 | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.63 | 0.00 | 2.254 | 4.64 | 0.00 | 5.1 | 94.9 | 0.0 | -1.74 | 0.84 | 0.67 | — | 4.5 | 0.030 | 2.65 | 66.0 | 0.11 | 19.67 | 0.02 | 0.888 | 153.73 | 3.43 | 43.9 | 54.5 | 1.5 | -7.26 | 2.44 | 0.88 | 0.83 | — | 117532 | 13060 | 8 | 0 | 3616 | 0 | 0 | logfile |