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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J2P | 5499 | 2022-12-12 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.009 | 1.92 | 0.0 | 0.12 | 17.49 | 0.02 | 2.155 | 110.43 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.003 | 0.89 | 0.0 | 0.04 | 17.76 | 0.00 | 1.885 | 69.47 | 0.94 | 17.9 | 78.7 | 3.5 | -4.28 | 0.92 | 0.38 | 0.72 | 1.06 | 9890 | 1134 | 8 | 0 | 6 | 0 | 1086 | logfile |
✔ | 3J9S | 6272 | 2022-12-13 | 2015-02-19 | 2.6 | 3.84 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.104 | 287.40 | 6.86 | 1.3 | 98.0 | 0.8 | 1.95 | 0.60 | 0.63 | 2.26 | 3.6 | 0.032 | 2.66 | 41.0 | 0.17 | 20.84 | 0.02 | 1.083 | 172.48 | 7.64 | 19.4 | 79.1 | 1.5 | -3.76 | 4.12 | 0.56 | 0.66 | 1.10 | 13084 | 1588 | 4 | 0 | 20 | 420 | 0 | logfile |
✔ | 6FLT | 4276 | 2022-12-11 | 2018-01-28 | 3.42 | 3.32 | — | 3.5 | 0.014 | 1.15 | 0.0 | 0.06 | 8.31 | 0.00 | 2.330 | 9.03 | 0.00 | 14.3 | 85.7 | 0.0 | -5.36 | 0.44 | 0.74 | 2.91 | 3.5 | 0.005 | 0.67 | 0.0 | 0.05 | 10.57 | 0.00 | 2.300 | 12.13 | 0.00 | 20.7 | 79.3 | 0.0 | -5.03 | 2.04 | 0.41 | 0.79 | 4.07 | 8060 | 580 | 10 | 0 | 0 | 0 | 4100 | logfile |
✔ | 7NNH | 12477 | 2022-12-11 | 2021-02-24 | 4.0 | 5.15 | — | 4.2 | 0.004 | 1.27 | 0.0 | 0.05 | 15.82 | 0.01 | 2.066 | 35.16 | 0.34 | 23.0 | 76.5 | 0.5 | -3.61 | 0.74 | 0.80 | — | 4.2 | 0.003 | 1.12 | 0.0 | 0.05 | 16.96 | 0.01 | 2.112 | 27.04 | 0.17 | 20.2 | 79.5 | 0.3 | -2.67 | 1.12 | 0.74 | 0.79 | — | 5299 | 637 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SZ4 | 25560 | 2022-12-22 | 2021-11-25 | 4.8 | 7.97 | 4.67 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 14.41 | 0.01 | 2.097 | 25.60 | 0.02 | 18.8 | 80.5 | 0.7 | -3.20 | 0.89 | 0.78 | — | 3.9 | 0.009 | 0.81 | 0.0 | 0.05 | 14.69 | 0.01 | 1.935 | 27.57 | 0.00 | 19.5 | 79.8 | 0.7 | -3.08 | 0.48 | 0.89 | 0.78 | — | 48242 | 5973 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Uo2 | 26638 | 2022-12-11 | 2022-04-12 | 3.1 | 3.75 | — | 3.0 | 0.002 | 0.55 | 0.0 | 0.03 | 19.04 | 0.00 | 2.033 | 10.61 | 2.04 | 14.5 | 83.6 | 1.8 | -3.16 | 0.85 | 0.73 | 1.50 | 2.9 | 0.008 | 1.01 | 0.0 | 0.05 | 21.30 | 0.01 | 1.816 | 35.98 | 2.04 | 20.0 | 80.0 | 0.0 | -2.88 | 0.75 | 0.88 | 0.81 | 1.52 | 6735 | 112 | 2 | 271 | 3 | 0 | 0 | logfile |
✔ | 7ASK | 11895 | 2022-12-12 | 2020-10-27 | 4.3 | 4.39 | — | 4.3 | 0.028 | 2.98 | 47.0 | 0.22 | 18.83 | 0.02 | 0.766 | 14.33 | 2.58 | 16.8 | 73.5 | 9.7 | -6.06 | 0.17 | 0.51 | — | 4.3 | 0.021 | 1.32 | 2.0 | 0.05 | 15.46 | 0.01 | 2.042 | 17.93 | 0.00 | 18.5 | 80.0 | 1.5 | -3.37 | 1.32 | 0.19 | 0.60 | — | 12285 | 1523 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7KWZ | 23059 | 2022-12-11 | 2020-12-02 | 3.2 | 3.41 | — | 3.4 | 0.006 | 0.80 | 0.0 | 0.05 | 12.48 | 0.00 | 2.271 | 14.29 | 0.00 | 7.3 | 92.7 | 0.0 | -5.51 | 0.47 | 0.81 | 4.47 | 3.4 | 0.008 | 0.97 | 0.0 | 0.05 | 15.62 | 0.01 | 2.151 | 21.09 | 1.14 | 20.0 | 80.0 | 0.0 | -5.58 | 1.07 | 0.49 | 0.85 | 4.11 | 4695 | 695 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GTD | 0062 | 2022-12-11 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 21.74 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.9 | 0.006 | 0.87 | 0.0 | 0.06 | 20.44 | 0.00 | 1.993 | 20.74 | 0.00 | 19.9 | 80.1 | 0.0 | -3.31 | 0.98 | 0.79 | 0.67 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 6ZD0 | 11172 | 2022-12-11 | 2020-06-13 | 4.6 | 4.62 | 2.80 | 3.7 | 0.004 | 0.91 | 0.0 | 0.05 | 7.55 | 0.00 | 2.207 | 10.05 | 0.00 | 10.1 | 89.8 | 0.1 | -4.73 | 0.59 | 0.58 | — | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 5.33 | 0.00 | 2.199 | 10.22 | 0.00 | 19.5 | 80.1 | 0.4 | -4.32 | 2.53 | 0.59 | 0.57 | — | 7962 | 1611 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H6B | 0148 | 2022-12-11 | 2018-07-26 | 3.4 | 3.13 | — | 3.5 | 0.008 | 1.10 | 0.0 | 0.20 | 8.13 | 0.00 | 2.530 | 5.82 | 0.00 | 14.3 | 85.7 | 0.0 | -4.80 | 0.44 | 0.74 | 5.60 | 3.2 | 0.005 | 0.91 | 0.0 | 0.18 | 11.69 | 0.00 | 2.137 | 6.56 | 0.50 | 19.6 | 80.4 | 0.0 | -4.04 | 1.83 | 0.41 | 0.78 | 3.27 | 8060 | 580 | 10 | 0 | 0 | 0 | 4100 | logfile |
✔ | 6VW2 | 21410 | 2022-12-11 | 2020-02-18 | 3.4 | 3.62 | — | 3.8 | 0.006 | 1.13 | 0.0 | 0.06 | 14.20 | 0.01 | 2.292 | 24.13 | 0.00 | 27.3 | 72.7 | 0.0 | -4.46 | 0.42 | 0.71 | 2.71 | 3.9 | 0.005 | 0.96 | 0.0 | 0.05 | 14.94 | 0.00 | 2.171 | 15.12 | 0.95 | 19.5 | 80.5 | 0.0 | -4.88 | 0.44 | 0.40 | 0.72 | 1.55 | 1800 | 240 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SXK | 25500 | 2022-12-22 | 2021-11-23 | 3.4 | 2.52 | 3.78 | 2.7 | 0.003 | 0.72 | 0.0 | 0.04 | 14.87 | 0.00 | 2.147 | 16.86 | 0.00 | 18.7 | 81.0 | 0.3 | -2.76 | 0.77 | 0.69 | 0.39 | 2.7 | 0.003 | 0.73 | 0.0 | 0.04 | 16.42 | 0.00 | 2.113 | 16.41 | 0.23 | 19.0 | 80.6 | 0.4 | -2.60 | 0.37 | 0.79 | 0.73 | 0.46 | 48937 | 6513 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YFP | 6827 | 2022-12-18 | 2017-09-21 | 4.4 | 8.20 | — | 6.7 | 0.006 | 1.33 | 0.0 | 0.06 | 12.26 | 0.01 | 2.215 | 16.92 | 0.10 | 17.8 | 81.5 | 0.7 | -6.11 | 0.83 | 0.34 | — | 5.5 | 0.004 | 1.10 | 0.0 | 0.04 | 10.51 | 0.00 | 2.070 | 27.46 | 0.20 | 19.1 | 80.6 | 0.3 | -2.06 | 3.38 | 0.90 | 0.70 | — | 33096 | 5982 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2022-12-14 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.31 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.004 | 0.83 | 0.0 | 0.04 | 19.26 | 0.01 | 1.964 | 33.23 | 0.23 | 18.1 | 80.7 | 1.3 | -5.17 | 1.94 | 0.80 | 0.66 | 0.62 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2022-12-16 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 15.49 | 0.01 | 0.879 | 12.40 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.004 | 0.65 | 0.0 | 0.03 | 17.10 | 0.01 | 1.501 | 60.50 | 1.68 | 16.8 | 81.0 | 2.1 | -3.46 | 1.60 | 0.58 | 0.80 | 1.11 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 7V4B | 31706 | 2022-12-11 | 2021-08-12 | 3.1 | 3.04 | — | 3.1 | 0.006 | 0.60 | 0.0 | 0.05 | 14.55 | 0.00 | 2.375 | 15.32 | 0.00 | 13.2 | 86.8 | 0.0 | -5.99 | 0.41 | 0.69 | 2.66 | 3.1 | 0.008 | 0.78 | 0.0 | 0.05 | 17.31 | 0.00 | 2.146 | 10.95 | 0.60 | 18.9 | 81.1 | 0.0 | -4.89 | 0.56 | 0.41 | 0.69 | 2.54 | 3336 | 480 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYG | 0543 | 2022-12-14 | 2019-02-11 | 3.9 | 4.55 | — | 3.9 | 0.005 | 0.97 | 0.0 | 0.06 | 10.45 | 0.00 | 2.242 | 9.27 | 0.16 | 14.1 | 85.9 | 0.0 | -4.66 | 0.82 | 0.64 | 0.83 | 3.9 | 0.005 | 0.83 | 0.0 | 0.05 | 13.68 | 0.00 | 2.072 | 28.07 | 0.45 | 18.8 | 81.1 | 0.0 | -4.18 | 0.74 | 0.83 | 0.68 | 1.00 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2022-12-11 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.004 | 0.84 | 0.0 | 0.04 | 7.94 | 0.00 | 2.314 | 8.45 | 0.00 | 18.9 | 81.1 | 0.0 | -3.03 | 2.40 | 0.47 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYJ | 0544 | 2022-12-14 | 2019-02-11 | 3.2 | 3.93 | — | 3.8 | 0.008 | 1.06 | 0.0 | 0.06 | 10.60 | 0.01 | 2.247 | 7.25 | 0.54 | 15.2 | 84.8 | 0.0 | -5.28 | 0.82 | 0.77 | 3.30 | 3.8 | 0.006 | 0.80 | 0.0 | 0.05 | 12.83 | 0.00 | 2.210 | 14.89 | 0.23 | 18.8 | 81.2 | 0.0 | -4.47 | 0.58 | 0.84 | 0.80 | 3.03 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |