Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GTD	0062	2022-07-03	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.9	0.006	0.87	0.0	0.06	20.44	0.00	1.993	20.74	0.00	19.9	80.1	0.0	-3.31	0.98	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6ZD0	11172	2022-07-03	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.3	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✔	6H6B	0148	2022-07-03	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.2	0.005	0.91	0.0	0.18	11.69	0.00	2.137	6.56	0.50	19.6	80.4	0.0	-4.04	1.83	0.42	0.78	3.27	8060	580	10	0	0	0	4100	logfile
✔	5G2X	3331	2022-07-04	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.04	17.15	0.01	1.994	28.48	0.45	18.5	80.5	1.1	-4.42	1.71	0.79	0.64	0.68	19072	487	3	704	0	0	0	logfile
✔	6VW2	21410	2022-07-02	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.40	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	5iMQ	6584	2022-07-11	2016-03-06	3.8	3.95	—	3.9	0.012	1.41	0.0	0.07	20.60	0.01	1.006	63.10	4.55	16.6	72.8	10.6	-4.61	0.71	0.65	0.92	3.9	0.006	0.96	2.0	0.04	19.19	0.01	1.732	25.86	1.21	17.1	80.6	2.4	-3.87	0.80	0.82	0.79	0.34	153046	6640	56	4680	1	0	0	logfile
✔	7AST	11904	2022-07-06	2020-10-28	4.0	3.84	—	3.5	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.75	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.6	0.018	1.20	1.0	0.05	17.51	0.01	1.897	36.36	0.05	18.8	80.8	0.5	-4.06	2.28	0.64	0.50	—	34518	4365	17	0	36	0	0	logfile
✔	6oKS	20103	2022-07-03	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.009	1.10	0.0	0.05	14.65	0.01	2.124	15.44	0.00	19.1	80.9	0.0	-4.60	2.23	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile
✔	6ZQA	11357	2022-07-05	2020-07-09	4.4	4.48	—	4.4	0.006	1.11	1.0	0.06	14.62	0.01	1.928	5.28	0.00	9.3	90.4	0.3	-3.27	0.77	0.74	—	4.4	0.008	1.21	0.0	0.06	16.57	0.01	1.705	19.08	0.00	18.9	81.0	0.1	-3.57	1.32	0.76	0.74	—	125991	19047	63	1485	5	0	0	logfile
✔	6NYG	0543	2022-07-04	2019-02-11	3.9	4.55	—	3.9	0.005	0.97	0.0	0.06	10.45	0.00	2.242	9.27	0.16	14.1	85.9	0.0	-4.66	0.82	0.64	0.83	3.9	0.005	0.83	0.0	0.05	13.68	0.00	2.072	28.07	0.45	18.8	81.1	0.0	-4.18	0.74	0.83	0.68	1.00	68664	9000	12	0	0	0	0	logfile
✔	7JLX	22383	2022-07-03	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7KXY	23067	2022-07-03	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.44	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.88	0.0	0.05	14.67	0.01	2.083	26.47	0.00	18.8	81.1	0.1	-4.97	0.60	0.64	0.62	—	9510	1181	2	0	0	0	0	logfile
✔	6NYJ	0544	2022-07-04	2019-02-11	3.2	3.93	—	3.8	0.008	1.06	0.0	0.06	10.60	0.01	2.247	7.25	0.54	15.2	84.8	0.0	-5.28	0.82	0.77	3.30	3.8	0.006	0.80	0.0	0.05	12.83	0.00	2.210	14.89	0.23	18.8	81.2	0.0	-4.47	0.58	0.82	0.78	3.03	68664	9000	12	0	0	0	0	logfile
✔	6JXA	9892	2022-07-04	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.80	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.003	0.90	0.0	0.04	11.46	0.01	2.176	16.41	0.00	15.9	81.4	2.7	-1.63	0.95	0.65	0.61	—	14100	2244	1	0	0	0	0	logfile
✔	7BZX	30262	2022-07-03	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.004	1.07	0.0	0.05	8.41	0.00	2.068	18.09	0.00	18.4	81.5	0.1	-5.13	3.15	0.75	0.57	—	5652	1154	2	0	0	0	0	logfile
✔	7LLK	23424	2022-07-07	2021-02-04	4.8	7.00	4.88	4.8	0.014	2.12	14.0	0.12	15.77	0.02	2.051	2.46	4.52	12.6	84.8	2.6	-3.42	0.81	0.73	—	4.8	0.007	0.89	0.0	0.05	13.40	0.01	1.729	39.63	0.14	17.9	81.6	0.5	-3.92	0.89	0.84	0.79	—	38982	2397	47	0	108	0	18627	logfile
✔	7DA4	30622	2022-07-02	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.95	0.0	0.04	11.56	0.00	2.266	19.19	0.00	18.3	81.7	0.0	-5.96	3.11	0.36	0.58	—	507	66	3	0	0	0	0	logfile
✔	5o4U	3746	2022-07-05	2017-05-31	4.2	4.27	4.23	4.3	0.007	1.26	2.0	0.08	11.28	0.01	0.586	16.09	1.75	17.3	82.7	0.0	-4.67	0.39	0.70	—	4.2	0.008	1.10	0.0	0.06	12.95	0.01	1.930	22.29	0.04	18.1	81.9	0.0	-3.26	1.33	0.46	0.76	—	24528	3312	16	0	0	0	0	logfile
✔	6EU1	3956	2022-07-07	2017-10-27	3.4	3.40	—	6.6	0.005	1.13	0.0	0.06	12.93	0.01	1.732	6.56	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.3	0.013	1.36	3.0	0.05	16.40	0.01	1.726	25.40	0.21	17.8	81.9	0.3	-4.08	2.02	0.48	0.41	0.16	40547	5012	24	43	7	0	0	logfile
✔	7MLZ	23914	2022-07-03	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.78	0.0	0.05	12.84	0.01	2.150	18.34	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.004	0.78	0.0	0.05	15.40	0.01	2.101	18.55	0.37	17.9	82.0	0.2	-4.24	0.52	0.82	0.65	1.02	4864	624	4	0	5	0	0	logfile

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