Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TNF	10531	2023-04-21	2019-12-07	3.8	2.90	3.67	2.7	0.032	1.64	0.0	0.32	19.07	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.6	0.005	1.03	0.0	0.08	13.61	0.01	2.106	13.33	0.00	19.1	80.8	0.1	-3.46	0.54	0.65	0.64	—	9559	2206	5	0	66	0	0	logfile
✔	7Uo2	26638	2023-04-20	2022-04-12	3.1	3.75	—	3.0	0.002	0.55	0.0	0.03	19.04	0.00	2.033	10.61	2.04	14.5	83.6	1.8	-3.16	0.85	0.73	1.50	2.9	0.008	1.02	0.0	0.05	21.41	0.01	1.813	36.07	1.02	19.1	80.9	0.0	-2.91	0.77	0.88	0.81	1.66	6735	112	2	271	3	0	0	logfile
✔	7N9Y	24264	2023-04-20	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	6CET	7465	2023-04-23	2018-02-12	4.4	4.41	—	4.3	0.007	1.42	0.0	0.07	13.40	0.01	2.251	8.50	0.96	19.7	80.1	0.2	-5.52	0.67	0.62	—	4.3	0.004	0.94	0.0	0.05	14.01	0.01	2.112	19.33	0.06	18.7	81.3	0.0	-3.78	1.59	0.68	0.63	—	14012	1741	3	0	0	0	0	logfile
✔	7WoP	32654	2023-04-20	2022-01-22	3.51	2.51	—	3.4	0.002	0.54	0.0	0.04	10.83	0.00	2.203	10.97	9.21	11.4	88.6	0.0	-4.81	0.64	0.66	1.96	3.4	0.005	0.85	0.0	0.05	14.87	0.01	2.063	24.57	0.72	18.5	81.5	0.0	-3.82	1.29	0.65	0.69	2.10	5107	669	3	0	0	0	0	logfile
✔	7N95	24250	2023-04-20	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✔	5WRG	6679	2023-04-23	2016-12-01	4.3	4.45	—	4.3	0.007	1.40	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.004	1.00	0.0	0.05	12.31	0.00	2.019	20.07	0.00	18.0	81.8	0.1	-3.25	1.52	0.68	0.76	—	16317	2208	3	0	0	0	0	logfile
✔	6NYJ	0544	2023-04-26	2019-02-11	3.2	3.93	—	3.8	0.008	1.06	0.0	0.06	10.60	0.01	2.247	7.25	0.54	15.2	84.8	0.0	-5.28	0.82	0.77	3.30	3.8	0.007	0.80	0.0	0.05	12.81	0.00	2.204	15.43	0.38	18.1	81.9	0.0	-4.31	0.58	0.83	0.79	3.08	68664	9000	12	0	0	0	0	logfile
✔	6L2T	0814	2023-04-22	2019-10-06	4.1	4.14	—	4.2	0.003	0.61	0.0	0.05	12.33	0.00	2.222	5.89	0.15	13.8	86.0	0.2	-5.72	0.61	0.76	—	4.2	0.005	0.77	0.0	0.05	12.54	0.01	2.083	8.68	0.00	17.6	82.3	0.1	-4.18	0.52	0.61	0.77	—	13604	1889	3	0	0	0	0	logfile
✔	6ND4	0441	2023-04-22	2018-12-13	4.3	4.41	—	4.2	0.010	1.03	0.0	0.06	14.55	0.02	2.230	5.19	0.00	6.4	93.6	0.1	-3.63	0.80	0.66	—	4.2	0.007	1.08	0.0	0.05	15.04	0.01	1.926	19.87	0.00	17.6	82.3	0.1	-3.59	1.14	0.85	0.77	—	63993	9225	30	551	1306	0	0	logfile
✔	7JLX	22383	2023-04-20	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6Z7Q	11112	2023-04-24	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	21.13	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.005	0.92	0.0	0.05	16.92	0.00	2.170	21.04	0.91	17.3	82.6	0.0	-4.35	1.20	0.75	0.83	1.27	16665	2080	5	0	0	0	0	logfile
✔	7XiZ	33213	2023-04-19	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	17.48	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.81	0.0	0.05	17.83	0.01	2.218	16.22	1.70	16.6	82.6	0.8	-3.61	1.54	0.37	0.74	1.40	2161	267	1	0	2	0	0	logfile
✔	7Ri4	24473	2023-04-22	2021-07-19	3.4	3.80	—	3.7	0.003	0.74	0.0	0.04	17.06	0.00	2.238	9.59	3.70	13.8	86.0	0.2	-5.39	0.71	0.77	0.92	3.7	0.004	0.79	0.0	0.05	17.86	0.00	2.141	12.80	0.77	17.2	82.7	0.1	-3.47	0.52	0.72	0.81	1.76	12248	1578	6	0	0	0	0	logfile
✔	6BX3	7303	2023-04-21	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.004	0.86	0.0	0.05	13.11	0.00	2.070	24.58	0.00	17.2	82.7	0.1	-3.48	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	6ACC	9588	2023-04-27	2018-07-26	3.6	3.90	—	3.8	0.005	0.95	1.0	0.06	9.62	0.01	2.139	6.04	0.43	12.0	87.4	0.6	-4.74	0.69	0.73	1.40	3.8	0.009	0.92	0.0	0.05	14.50	0.01	2.081	18.43	0.65	16.9	82.8	0.3	-3.14	0.87	0.72	0.76	1.86	24906	3195	3	0	0	0	0	logfile
✔	6NYN	0547	2023-04-26	2019-02-11	3.5	4.40	—	4.1	0.006	1.01	0.0	0.06	10.55	0.01	2.259	7.62	0.97	16.7	83.3	0.0	-5.19	0.87	0.77	2.69	4.1	0.004	0.71	0.0	0.05	12.57	0.00	2.163	16.36	0.20	17.0	83.0	0.0	-4.58	0.51	0.88	0.79	2.29	68664	9000	12	0	0	0	0	logfile
✔	6HDD	0204	2023-04-28	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✔	7JG9	22315	2023-04-25	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.56	0.0	0.20	7.47	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	2.2	0.006	1.14	0.0	0.09	7.80	0.01	2.173	4.53	0.00	16.6	83.2	0.2	-2.08	1.33	0.72	0.71	—	19569	4826	26	0	7	0	0	logfile
✔	6GJ1	0009	2023-04-22	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.57	0.01	2.086	22.39	0.00	16.4	83.4	0.1	-3.83	1.16	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile

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