Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ASK	11895	2021-11-02	2020-10-27	4.3	4.39	—	4.3	0.028	2.98	47.0	0.22	18.83	0.02	0.766	14.48	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.33	2.0	0.05	15.43	0.01	2.033	19.19	0.00	17.6	81.0	1.4	-3.53	2.20	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	6oSJ	20183	2021-11-01	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.78	4.82	2.8	0.005	0.81	0.0	0.06	16.78	0.00	2.211	10.14	5.81	19.0	81.0	0.0	-3.80	2.16	0.51	0.80	3.93	4210	610	10	0	0	0	0	logfile
✔	6S13	10079	2021-11-20	2019-06-18	3.58	3.67	—	5.8	0.023	1.27	2.0	0.06	22.26	0.01	1.596	18.79	21.29	20.5	79.4	0.1	-5.98	0.56	0.28	0.14	3.6	0.012	0.87	2.0	0.04	21.78	0.01	1.315	28.41	1.37	18.9	81.1	0.0	-4.60	2.82	0.68	0.59	0.75	233957	5608	52	4559	0	0	93218	logfile
✔	7JLX	22383	2021-11-01	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6NY1	8994	2021-11-02	2019-02-10	4.2	4.56	—	4.3	0.007	1.11	0.0	0.06	21.20	0.01	2.099	9.52	0.33	18.6	81.0	0.4	-4.84	0.80	0.80	—	4.4	0.004	0.75	0.0	0.04	20.19	0.00	2.115	18.30	0.17	18.8	81.1	0.1	-2.50	0.57	0.80	0.79	—	9911	783	4	154	121	0	0	logfile
✔	5o4U	3746	2021-11-03	2017-05-31	4.2	4.27	4.23	4.3	0.007	1.26	2.0	0.08	11.28	0.01	0.586	15.82	1.75	17.3	82.7	0.0	-4.67	0.39	0.70	—	4.2	0.007	1.04	0.0	0.06	13.04	0.01	2.100	21.91	0.04	18.7	81.3	0.0	-3.38	0.74	0.46	0.77	—	24528	3312	16	0	0	0	0	logfile
✔	6ZRR	11383	2021-11-01	2020-07-14	4.0	4.04	3.78	4.3	0.015	1.20	0.0	0.06	13.24	0.00	2.189	28.46	0.00	5.0	95.0	0.0	-4.56	0.62	0.69	—	4.3	0.003	0.69	0.0	0.05	14.39	0.00	2.106	31.60	0.62	18.6	81.4	0.0	-4.86	2.47	0.65	0.74	—	5724	414	18	0	0	0	2664	logfile
✔	6H6B	0148	2021-11-01	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.73	5.60	3.2	0.004	0.88	0.0	0.18	11.47	0.00	2.141	6.06	0.50	18.6	81.4	0.0	-3.74	1.18	0.43	0.78	3.92	8060	580	10	0	0	0	4100	logfile
✔	6ZRQ	11382	2021-11-01	2020-07-14	3.9	4.06	—	4.2	0.014	1.20	0.0	0.05	12.20	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.74	0.0	0.04	13.08	0.00	2.142	21.66	2.31	18.3	81.7	0.0	-6.23	2.16	0.70	0.77	2.54	3816	276	12	0	0	0	1776	logfile
✔	6KN8	0729	2021-11-02	2019-08-03	4.8	8.89	—	8.4	0.019	1.81	10.0	0.10	12.39	0.01	2.211	9.21	0.41	2.0	97.4	0.5	-0.24	0.74	0.43	—	8.4	0.068	4.46	926.0	0.26	14.48	0.02	0.269	227.28	0.61	9.8	82.0	8.2	-2.45	11.35	0.77	0.41	—	60966	7669	44	0	15	0	0	logfile
✔	6EU0	3955	2021-11-06	2017-10-27	4.0	4.06	—	4.0	0.005	1.08	0.0	0.06	14.27	0.01	1.879	8.40	0.53	15.4	84.3	0.3	-5.25	0.72	0.66	—	4.0	0.008	1.01	1.0	0.05	18.13	0.01	1.923	20.47	0.86	17.9	82.0	0.2	-3.09	2.60	0.78	0.75	—	48918	5949	28	108	8	0	0	logfile
✔	6XU7	10623	2021-11-16	2020-01-17	4.9	4.33	—	4.3	0.012	1.44	4.0	0.07	20.25	0.01	0.773	15.04	1.43	16.6	82.9	0.5	-5.24	0.74	0.62	—	4.3	0.007	0.97	0.0	0.05	19.50	0.01	1.876	34.40	0.05	17.7	82.1	0.2	-3.67	1.28	0.74	0.62	—	219005	11764	83	6003	0	0	0	logfile
✔	6ZQA	11357	2021-11-03	2020-07-09	4.4	4.48	—	4.4	0.006	1.11	1.0	0.06	14.62	0.01	1.928	5.28	0.00	9.3	90.4	0.3	-3.27	0.77	0.74	—	4.4	0.007	1.10	0.0	0.05	16.48	0.00	1.686	15.84	0.00	17.8	82.1	0.1	-3.14	2.55	0.76	0.74	—	125991	19047	63	1485	5	0	0	logfile
✔	7JSE	22451	2021-11-02	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.51	—	4.8	0.007	1.09	0.0	0.09	14.63	0.00	2.154	10.52	0.00	17.8	82.2	0.0	-2.70	2.79	0.86	0.40	—	13288	3168	24	32	0	0	0	logfile
✔	7BoY	30136	2021-11-05	2020-03-20	3.8	3.79	—	3.8	0.008	1.49	0.0	0.07	12.88	0.01	1.717	15.08	1.21	16.1	82.7	1.1	-5.15	0.84	0.83	2.69	3.7	0.004	0.94	0.0	0.05	15.71	0.01	2.089	20.87	0.34	17.6	82.2	0.3	-3.56	2.04	0.85	0.84	2.09	37794	4740	6	0	0	0	0	logfile
✔	7AST	11904	2021-11-05	2020-10-28	4.0	3.84	—	3.5	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.60	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.6	0.018	1.21	1.0	0.05	17.54	0.01	1.879	32.78	0.27	17.5	82.2	0.3	-3.60	1.41	0.64	0.50	—	34518	4365	17	0	36	0	0	logfile
✔	5WRG	6679	2021-11-02	2016-12-01	4.3	4.45	—	4.3	0.007	1.37	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.004	1.10	0.0	0.05	12.19	0.00	2.012	20.45	0.00	17.4	82.4	0.1	-3.31	1.51	0.68	0.76	—	16317	2208	3	0	0	0	0	logfile
✔	5ANC	3147	2021-11-06	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	19.00	0.01	1.236	6.59	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.007	0.99	0.0	0.05	17.86	0.01	2.052	25.13	0.04	16.6	82.5	0.9	-4.05	1.66	0.40	0.71	—	46807	2801	11	1162	0	0	0	logfile
✔	7MLZ	23914	2021-11-01	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.78	0.0	0.05	12.84	0.01	2.150	18.02	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.004	0.80	0.0	0.05	14.91	0.01	2.041	18.55	0.56	17.4	82.5	0.2	-4.13	0.55	0.81	0.64	1.15	4864	624	4	0	5	0	0	logfile
✔	6BX3	7303	2021-11-02	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.009	1.11	1.0	0.05	13.43	0.01	2.022	27.42	0.00	17.5	82.5	0.1	-3.47	1.45	0.74	0.73	—	10456	1413	7	0	0	0	0	logfile

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