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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6TNF | 10531 | 2023-04-21 | 2019-12-07 | 3.8 | 2.90 | 3.67 | 2.7 | 0.032 | 1.64 | 0.0 | 0.32 | 19.07 | 0.01 | 2.236 | 8.40 | 0.00 | 17.8 | 81.5 | 0.7 | -5.32 | 0.60 | 0.56 | — | 2.6 | 0.005 | 1.03 | 0.0 | 0.08 | 13.61 | 0.01 | 2.106 | 13.33 | 0.00 | 19.1 | 80.8 | 0.1 | -3.46 | 0.54 | 0.65 | 0.64 | — | 9559 | 2206 | 5 | 0 | 66 | 0 | 0 | logfile |
✔ | 7Uo2 | 26638 | 2023-04-20 | 2022-04-12 | 3.1 | 3.75 | — | 3.0 | 0.002 | 0.55 | 0.0 | 0.03 | 19.04 | 0.00 | 2.033 | 10.61 | 2.04 | 14.5 | 83.6 | 1.8 | -3.16 | 0.85 | 0.73 | 1.50 | 2.9 | 0.008 | 1.02 | 0.0 | 0.05 | 21.41 | 0.01 | 1.813 | 36.07 | 1.02 | 19.1 | 80.9 | 0.0 | -2.91 | 0.77 | 0.88 | 0.81 | 1.66 | 6735 | 112 | 2 | 271 | 3 | 0 | 0 | logfile |
✔ | 7N9Y | 24264 | 2023-04-20 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.81 | 0.00 | 2.550 | 7.73 | 0.00 | 18.2 | 81.3 | 0.5 | -4.24 | 2.61 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CET | 7465 | 2023-04-23 | 2018-02-12 | 4.4 | 4.41 | — | 4.3 | 0.007 | 1.42 | 0.0 | 0.07 | 13.40 | 0.01 | 2.251 | 8.50 | 0.96 | 19.7 | 80.1 | 0.2 | -5.52 | 0.67 | 0.62 | — | 4.3 | 0.004 | 0.94 | 0.0 | 0.05 | 14.01 | 0.01 | 2.112 | 19.33 | 0.06 | 18.7 | 81.3 | 0.0 | -3.78 | 1.59 | 0.68 | 0.63 | — | 14012 | 1741 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoP | 32654 | 2023-04-20 | 2022-01-22 | 3.51 | 2.51 | — | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 10.83 | 0.00 | 2.203 | 10.97 | 9.21 | 11.4 | 88.6 | 0.0 | -4.81 | 0.64 | 0.66 | 1.96 | 3.4 | 0.005 | 0.85 | 0.0 | 0.05 | 14.87 | 0.01 | 2.063 | 24.57 | 0.72 | 18.5 | 81.5 | 0.0 | -3.82 | 1.29 | 0.65 | 0.69 | 2.10 | 5107 | 669 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N95 | 24250 | 2023-04-20 | 2021-06-16 | 4.1 | 3.45 | — | 2.1 | 0.002 | 0.74 | 0.0 | 0.00 | 5.05 | 0.00 | 2.573 | 0.10 | 0.00 | 7.1 | 92.3 | 0.6 | -1.14 | 0.78 | 0.70 | — | 2.1 | 0.004 | 1.01 | 0.0 | 0.00 | 4.97 | 0.00 | 2.503 | 6.53 | 0.00 | 18.1 | 81.7 | 0.2 | -3.27 | 1.81 | 0.85 | 0.83 | — | 7299 | 2433 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WRG | 6679 | 2023-04-23 | 2016-12-01 | 4.3 | 4.45 | — | 4.3 | 0.007 | 1.40 | 0.0 | 0.07 | 12.06 | 0.01 | 2.191 | 9.91 | 0.53 | 18.0 | 81.4 | 0.7 | -5.05 | 0.66 | 0.69 | — | 4.3 | 0.004 | 1.00 | 0.0 | 0.05 | 12.31 | 0.00 | 2.019 | 20.07 | 0.00 | 18.0 | 81.8 | 0.1 | -3.25 | 1.52 | 0.68 | 0.76 | — | 16317 | 2208 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYJ | 0544 | 2023-04-26 | 2019-02-11 | 3.2 | 3.93 | — | 3.8 | 0.008 | 1.06 | 0.0 | 0.06 | 10.60 | 0.01 | 2.247 | 7.25 | 0.54 | 15.2 | 84.8 | 0.0 | -5.28 | 0.82 | 0.77 | 3.30 | 3.8 | 0.007 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.204 | 15.43 | 0.38 | 18.1 | 81.9 | 0.0 | -4.31 | 0.58 | 0.83 | 0.79 | 3.08 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L2T | 0814 | 2023-04-22 | 2019-10-06 | 4.1 | 4.14 | — | 4.2 | 0.003 | 0.61 | 0.0 | 0.05 | 12.33 | 0.00 | 2.222 | 5.89 | 0.15 | 13.8 | 86.0 | 0.2 | -5.72 | 0.61 | 0.76 | — | 4.2 | 0.005 | 0.77 | 0.0 | 0.05 | 12.54 | 0.01 | 2.083 | 8.68 | 0.00 | 17.6 | 82.3 | 0.1 | -4.18 | 0.52 | 0.61 | 0.77 | — | 13604 | 1889 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ND4 | 0441 | 2023-04-22 | 2018-12-13 | 4.3 | 4.41 | — | 4.2 | 0.010 | 1.03 | 0.0 | 0.06 | 14.55 | 0.02 | 2.230 | 5.19 | 0.00 | 6.4 | 93.6 | 0.1 | -3.63 | 0.80 | 0.66 | — | 4.2 | 0.007 | 1.08 | 0.0 | 0.05 | 15.04 | 0.01 | 1.926 | 19.87 | 0.00 | 17.6 | 82.3 | 0.1 | -3.59 | 1.14 | 0.85 | 0.77 | — | 63993 | 9225 | 30 | 551 | 1306 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2023-04-20 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 7.17 | 0.00 | 2.306 | 8.03 | 0.00 | 17.7 | 82.3 | 0.0 | -2.25 | 2.42 | 0.48 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z7Q | 11112 | 2023-04-24 | 2020-06-01 | 3.8 | 4.10 | 3.58 | 4.0 | 0.006 | 0.77 | 0.0 | 0.05 | 14.47 | 0.00 | 2.176 | 21.13 | 0.00 | 28.6 | 70.7 | 0.7 | -6.49 | 0.73 | 0.82 | 1.75 | 4.0 | 0.005 | 0.92 | 0.0 | 0.05 | 16.92 | 0.00 | 2.170 | 21.04 | 0.91 | 17.3 | 82.6 | 0.0 | -4.35 | 1.20 | 0.75 | 0.83 | 1.27 | 16665 | 2080 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XiZ | 33213 | 2023-04-19 | 2022-04-14 | 3.74 | 3.27 | 3.81 | 3.1 | 0.013 | 1.11 | 0.0 | 0.06 | 17.48 | 0.01 | 2.386 | 4.94 | 0.00 | 12.8 | 86.4 | 0.8 | -3.37 | 0.35 | 0.71 | 1.78 | 3.1 | 0.004 | 0.81 | 0.0 | 0.05 | 17.83 | 0.01 | 2.218 | 16.22 | 1.70 | 16.6 | 82.6 | 0.8 | -3.61 | 1.54 | 0.37 | 0.74 | 1.40 | 2161 | 267 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7Ri4 | 24473 | 2023-04-22 | 2021-07-19 | 3.4 | 3.80 | — | 3.7 | 0.003 | 0.74 | 0.0 | 0.04 | 17.06 | 0.00 | 2.238 | 9.59 | 3.70 | 13.8 | 86.0 | 0.2 | -5.39 | 0.71 | 0.77 | 0.92 | 3.7 | 0.004 | 0.79 | 0.0 | 0.05 | 17.86 | 0.00 | 2.141 | 12.80 | 0.77 | 17.2 | 82.7 | 0.1 | -3.47 | 0.52 | 0.72 | 0.81 | 1.76 | 12248 | 1578 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BX3 | 7303 | 2023-04-21 | 2017-12-16 | 4.3 | 4.71 | — | 4.4 | 0.007 | 1.49 | 0.0 | 0.08 | 12.65 | 0.01 | 1.094 | 24.88 | 0.97 | 18.8 | 81.2 | 0.1 | -5.00 | 0.74 | 0.72 | — | 4.4 | 0.004 | 0.86 | 0.0 | 0.05 | 13.11 | 0.00 | 2.070 | 24.58 | 0.00 | 17.2 | 82.7 | 0.1 | -3.48 | 1.39 | 0.74 | 0.72 | — | 10456 | 1413 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ACC | 9588 | 2023-04-27 | 2018-07-26 | 3.6 | 3.90 | — | 3.8 | 0.005 | 0.95 | 1.0 | 0.06 | 9.62 | 0.01 | 2.139 | 6.04 | 0.43 | 12.0 | 87.4 | 0.6 | -4.74 | 0.69 | 0.73 | 1.40 | 3.8 | 0.009 | 0.92 | 0.0 | 0.05 | 14.50 | 0.01 | 2.081 | 18.43 | 0.65 | 16.9 | 82.8 | 0.3 | -3.14 | 0.87 | 0.72 | 0.76 | 1.86 | 24906 | 3195 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYN | 0547 | 2023-04-26 | 2019-02-11 | 3.5 | 4.40 | — | 4.1 | 0.006 | 1.01 | 0.0 | 0.06 | 10.55 | 0.01 | 2.259 | 7.62 | 0.97 | 16.7 | 83.3 | 0.0 | -5.19 | 0.87 | 0.77 | 2.69 | 4.1 | 0.004 | 0.71 | 0.0 | 0.05 | 12.57 | 0.00 | 2.163 | 16.36 | 0.20 | 17.0 | 83.0 | 0.0 | -4.58 | 0.51 | 0.88 | 0.79 | 2.29 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HDD | 0204 | 2023-04-28 | 2018-08-17 | 4.5 | 5.28 | — | 4.4 | 0.009 | 1.36 | 3.0 | 0.08 | 12.60 | 0.01 | 2.220 | 12.08 | 1.07 | 18.3 | 81.6 | 0.1 | -6.11 | 0.74 | 0.42 | — | 8.5 | 0.005 | 1.07 | 0.0 | 0.05 | 13.67 | 0.01 | 1.438 | 29.15 | 0.00 | 16.5 | 83.1 | 0.4 | -3.27 | 5.54 | 0.87 | 0.54 | — | 28154 | 3605 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JG9 | 22315 | 2023-04-25 | 2020-07-18 | 3.4 | 2.37 | 3.49 | 3.4 | 0.009 | 1.56 | 0.0 | 0.20 | 7.47 | 0.01 | 2.424 | 0.51 | 0.00 | 2.9 | 96.8 | 0.3 | -1.25 | 0.61 | 0.54 | — | 2.2 | 0.006 | 1.14 | 0.0 | 0.09 | 7.80 | 0.01 | 2.173 | 4.53 | 0.00 | 16.6 | 83.2 | 0.2 | -2.08 | 1.33 | 0.72 | 0.71 | — | 19569 | 4826 | 26 | 0 | 7 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2023-04-22 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.05 | 12.57 | 0.01 | 2.086 | 22.39 | 0.00 | 16.4 | 83.4 | 0.1 | -3.83 | 1.16 | 0.85 | 0.76 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |