Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J2P	5499	2022-12-12	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	110.43	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.89	0.0	0.04	17.76	0.00	1.885	69.47	0.94	17.9	78.7	3.5	-4.28	0.92	0.38	0.72	1.06	9890	1134	8	0	6	0	1086	logfile
✔	3J9S	6272	2022-12-13	2015-02-19	2.6	3.84	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.104	287.40	6.86	1.3	98.0	0.8	1.95	0.60	0.63	2.26	3.6	0.032	2.66	41.0	0.17	20.84	0.02	1.083	172.48	7.64	19.4	79.1	1.5	-3.76	4.12	0.56	0.66	1.10	13084	1588	4	0	20	420	0	logfile
✔	6FLT	4276	2022-12-11	2018-01-28	3.42	3.32	—	3.5	0.014	1.15	0.0	0.06	8.31	0.00	2.330	9.03	0.00	14.3	85.7	0.0	-5.36	0.44	0.74	2.91	3.5	0.005	0.67	0.0	0.05	10.57	0.00	2.300	12.13	0.00	20.7	79.3	0.0	-5.03	2.04	0.41	0.79	4.07	8060	580	10	0	0	0	4100	logfile
✔	7NNH	12477	2022-12-11	2021-02-24	4.0	5.15	—	4.2	0.004	1.27	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.003	1.12	0.0	0.05	16.96	0.01	2.112	27.04	0.17	20.2	79.5	0.3	-2.67	1.12	0.74	0.79	—	5299	637	1	0	0	0	0	logfile
✔	7SZ4	25560	2022-12-22	2021-11-25	4.8	7.97	4.67	3.9	0.003	0.79	0.0	0.05	14.41	0.01	2.097	25.60	0.02	18.8	80.5	0.7	-3.20	0.89	0.78	—	3.9	0.009	0.81	0.0	0.05	14.69	0.01	1.935	27.57	0.00	19.5	79.8	0.7	-3.08	0.48	0.89	0.78	—	48242	5973	12	0	0	0	0	logfile
✔	7Uo2	26638	2022-12-11	2022-04-12	3.1	3.75	—	3.0	0.002	0.55	0.0	0.03	19.04	0.00	2.033	10.61	2.04	14.5	83.6	1.8	-3.16	0.85	0.73	1.50	2.9	0.008	1.01	0.0	0.05	21.30	0.01	1.816	35.98	2.04	20.0	80.0	0.0	-2.88	0.75	0.88	0.81	1.52	6735	112	2	271	3	0	0	logfile
✔	7ASK	11895	2022-12-12	2020-10-27	4.3	4.39	—	4.3	0.028	2.98	47.0	0.22	18.83	0.02	0.766	14.33	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.32	2.0	0.05	15.46	0.01	2.042	17.93	0.00	18.5	80.0	1.5	-3.37	1.32	0.19	0.60	—	12285	1523	1	0	2	0	0	logfile
✔	7KWZ	23059	2022-12-11	2020-12-02	3.2	3.41	—	3.4	0.006	0.80	0.0	0.05	12.48	0.00	2.271	14.29	0.00	7.3	92.7	0.0	-5.51	0.47	0.81	4.47	3.4	0.008	0.97	0.0	0.05	15.62	0.01	2.151	21.09	1.14	20.0	80.0	0.0	-5.58	1.07	0.49	0.85	4.11	4695	695	5	0	0	0	0	logfile
✔	6GTD	0062	2022-12-11	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.9	0.006	0.87	0.0	0.06	20.44	0.00	1.993	20.74	0.00	19.9	80.1	0.0	-3.31	0.98	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6ZD0	11172	2022-12-11	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.3	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✔	6H6B	0148	2022-12-11	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.2	0.005	0.91	0.0	0.18	11.69	0.00	2.137	6.56	0.50	19.6	80.4	0.0	-4.04	1.83	0.41	0.78	3.27	8060	580	10	0	0	0	4100	logfile
✔	6VW2	21410	2022-12-11	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.40	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	7SXK	25500	2022-12-22	2021-11-23	3.4	2.52	3.78	2.7	0.003	0.72	0.0	0.04	14.87	0.00	2.147	16.86	0.00	18.7	81.0	0.3	-2.76	0.77	0.69	0.39	2.7	0.003	0.73	0.0	0.04	16.42	0.00	2.113	16.41	0.23	19.0	80.6	0.4	-2.60	0.37	0.79	0.73	0.46	48937	6513	12	0	0	0	0	logfile
✔	5YFP	6827	2022-12-18	2017-09-21	4.4	8.20	—	6.7	0.006	1.33	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.004	1.10	0.0	0.04	10.51	0.00	2.070	27.46	0.20	19.1	80.6	0.3	-2.06	3.38	0.90	0.70	—	33096	5982	8	0	0	0	0	logfile
✔	5G2X	3331	2022-12-14	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.83	0.0	0.04	19.26	0.01	1.964	33.23	0.23	18.1	80.7	1.3	-5.17	1.94	0.80	0.66	0.62	19072	487	3	704	0	0	0	logfile
✔	4UY8	2773	2022-12-16	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.40	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	4.0	0.004	0.65	0.0	0.03	17.10	0.01	1.501	60.50	1.68	16.8	81.0	2.1	-3.46	1.60	0.58	0.80	1.11	92995	3468	47	3049	144	439	8	logfile
✔	7V4B	31706	2022-12-11	2021-08-12	3.1	3.04	—	3.1	0.006	0.60	0.0	0.05	14.55	0.00	2.375	15.32	0.00	13.2	86.8	0.0	-5.99	0.41	0.69	2.66	3.1	0.008	0.78	0.0	0.05	17.31	0.00	2.146	10.95	0.60	18.9	81.1	0.0	-4.89	0.56	0.41	0.69	2.54	3336	480	6	0	0	0	0	logfile
✔	6NYG	0543	2022-12-14	2019-02-11	3.9	4.55	—	3.9	0.005	0.97	0.0	0.06	10.45	0.00	2.242	9.27	0.16	14.1	85.9	0.0	-4.66	0.82	0.64	0.83	3.9	0.005	0.83	0.0	0.05	13.68	0.00	2.072	28.07	0.45	18.8	81.1	0.0	-4.18	0.74	0.83	0.68	1.00	68664	9000	12	0	0	0	0	logfile
✔	7JLX	22383	2022-12-11	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6NYJ	0544	2022-12-14	2019-02-11	3.2	3.93	—	3.8	0.008	1.06	0.0	0.06	10.60	0.01	2.247	7.25	0.54	15.2	84.8	0.0	-5.28	0.82	0.77	3.30	3.8	0.006	0.80	0.0	0.05	12.83	0.00	2.210	14.89	0.23	18.8	81.2	0.0	-4.47	0.58	0.84	0.80	3.03	68664	9000	12	0	0	0	0	logfile

• ← previous
• Page 4 of 443
• next →