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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6JXA | 9892 | 2023-11-16 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.72 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.005 | 1.04 | 0.0 | 0.05 | 11.62 | 0.01 | 2.085 | 25.04 | 0.00 | 17.4 | 79.8 | 2.8 | -2.41 | 0.95 | 0.65 | 0.59 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VZF | 32227 | 2023-11-13 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.45 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.005 | 0.93 | 0.0 | 0.05 | 18.70 | 0.00 | 2.192 | 14.23 | 5.32 | 20.2 | 79.8 | 0.0 | -4.30 | 1.92 | 0.37 | 0.63 | -0.01 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JSE | 22451 | 2023-11-15 | 2020-08-14 | 4.6 | 5.13 | — | 4.2 | 0.001 | 0.38 | 0.0 | 0.02 | 10.51 | 0.00 | 2.425 | 0.00 | 0.00 | 11.4 | 88.0 | 0.6 | -2.68 | 0.79 | 0.50 | — | 3.9 | 0.007 | 1.10 | 0.0 | 0.09 | 14.86 | 0.00 | 2.156 | 11.87 | 0.00 | 20.1 | 79.9 | 0.0 | -3.21 | 2.77 | 0.87 | 0.64 | — | 13288 | 3168 | 24 | 32 | 0 | 0 | 0 | logfile |
✔ | 7ASK | 11895 | 2023-11-15 | 2020-10-27 | 4.3 | 4.39 | — | 4.3 | 0.028 | 2.99 | 47.0 | 0.22 | 18.83 | 0.02 | 0.766 | 14.21 | 2.58 | 16.8 | 73.5 | 9.7 | -6.06 | 0.17 | 0.51 | — | 4.3 | 0.015 | 1.14 | 2.0 | 0.05 | 15.52 | 0.01 | 1.979 | 19.61 | 0.00 | 18.6 | 79.9 | 1.4 | -3.48 | 1.34 | 0.19 | 0.61 | — | 12285 | 1523 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6NYL | 0545 | 2023-11-17 | 2019-02-11 | 3.7 | 4.50 | — | 4.1 | 0.008 | 1.14 | 0.0 | 0.06 | 11.10 | 0.01 | 2.233 | 10.38 | 0.97 | 16.1 | 83.9 | 0.0 | -5.60 | 0.87 | 0.74 | 2.26 | 4.1 | 0.005 | 0.81 | 0.0 | 0.05 | 12.87 | 0.00 | 2.133 | 25.47 | 0.31 | 20.1 | 79.9 | 0.0 | -4.78 | 0.53 | 0.87 | 0.74 | 1.84 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Uo2 | 26638 | 2023-11-14 | 2022-04-12 | 3.1 | 3.75 | — | 3.0 | 0.002 | 0.55 | 0.0 | 0.03 | 19.04 | 0.00 | 2.033 | 10.61 | 2.04 | 14.5 | 83.6 | 1.8 | -3.16 | 0.85 | 0.73 | 1.50 | 2.9 | 0.009 | 1.06 | 0.0 | 0.05 | 21.52 | 0.01 | 1.804 | 38.32 | 4.08 | 20.0 | 80.0 | 0.0 | -3.08 | 0.77 | 0.88 | 0.81 | 1.68 | 6735 | 112 | 2 | 271 | 3 | 0 | 0 | logfile |
✔ | 7TKG | 25968 | 2023-11-17 | 2022-01-17 | 4.5 | 7.60 | 4.79 | 4.2 | 0.019 | 2.20 | 0.0 | 0.00 | 6.95 | 0.01 | 2.361 | 0.08 | 0.00 | 4.3 | 94.2 | 1.5 | -0.60 | 0.58 | 0.61 | — | 4.3 | 0.007 | 1.14 | 0.0 | 0.00 | 7.61 | 0.01 | 2.015 | 33.28 | 0.00 | 19.7 | 80.0 | 0.3 | -3.26 | 2.09 | 0.77 | 0.80 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZQA | 11357 | 2023-11-17 | 2020-07-09 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.11 | 1.0 | 0.06 | 14.62 | 0.01 | 1.928 | 5.28 | 0.00 | 9.3 | 90.4 | 0.3 | -3.27 | 0.77 | 0.74 | — | 4.4 | 0.009 | 1.23 | 0.0 | 0.06 | 16.71 | 0.01 | 1.616 | 19.59 | 0.00 | 19.9 | 80.0 | 0.1 | -3.67 | 1.33 | 0.76 | 0.74 | — | 125991 | 19047 | 63 | 1485 | 5 | 0 | 0 | logfile |
✔ | 7ZCF | 14629 | 2023-11-13 | 2022-03-28 | 4.0 | 4.23 | 3.97 | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 14.12 | 0.00 | 2.089 | 10.15 | 0.56 | 14.8 | 85.2 | 0.0 | -2.45 | 0.67 | 0.71 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.05 | 16.06 | 0.00 | 2.129 | 14.91 | 1.40 | 19.8 | 80.2 | 0.0 | -3.01 | 0.62 | 0.70 | 0.78 | — | 3312 | 426 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8GTD | 34250 | 2023-11-20 | 2022-09-08 | 4.7 | 4.27 | 4.25 | 4.2 | 0.014 | 2.16 | 0.0 | 0.00 | 5.49 | 0.01 | 2.285 | 3.73 | 0.00 | 8.4 | 90.0 | 1.6 | 0.41 | 0.50 | 0.44 | — | 4.2 | 0.004 | 0.93 | 0.0 | 0.00 | 6.20 | 0.00 | 2.228 | 4.76 | 0.00 | 19.1 | 80.2 | 0.7 | -2.63 | 1.26 | 0.52 | 0.51 | — | 29580 | 7392 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2023-11-21 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 15.49 | 0.01 | 0.879 | 12.34 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.005 | 0.68 | 0.0 | 0.03 | 17.03 | 0.01 | 1.621 | 60.74 | 1.89 | 17.4 | 80.4 | 2.2 | -3.49 | 1.57 | 0.58 | 0.80 | 1.12 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 7Q67 | 13854 | 2023-11-13 | 2021-11-05 | 3.37 | 3.41 | 2.44 | 3.4 | 0.020 | 2.21 | 0.0 | 0.14 | 14.47 | 0.01 | 2.280 | 12.16 | 8.00 | 16.1 | 83.9 | 0.0 | -4.98 | 0.51 | 0.71 | 2.52 | 3.5 | 0.003 | 0.90 | 0.0 | 0.05 | 18.07 | 0.00 | 2.112 | 24.32 | 0.73 | 19.4 | 80.6 | 0.0 | -4.92 | 2.31 | 0.45 | 0.69 | 0.92 | 2618 | 363 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YFP | 6827 | 2023-11-21 | 2017-09-21 | 4.4 | 8.20 | — | 6.7 | 0.006 | 1.35 | 0.0 | 0.06 | 12.26 | 0.01 | 2.215 | 16.92 | 0.10 | 17.8 | 81.5 | 0.7 | -6.11 | 0.83 | 0.34 | — | 5.5 | 0.005 | 1.05 | 0.0 | 0.05 | 11.10 | 0.00 | 2.021 | 30.50 | 0.10 | 19.1 | 80.6 | 0.3 | -2.79 | 3.94 | 0.90 | 0.74 | — | 33096 | 5982 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BZW | 30261 | 2023-11-14 | 2020-04-28 | 4.6 | 7.66 | 4.73 | 6.0 | 0.003 | 0.82 | 0.0 | 0.05 | 15.82 | 0.01 | 2.176 | 28.88 | 0.00 | 19.4 | 80.6 | 0.0 | -5.59 | 0.85 | 0.67 | — | 6.5 | 0.003 | 0.82 | 0.0 | 0.05 | 14.68 | 0.01 | 1.922 | 20.13 | 0.00 | 19.3 | 80.7 | 0.0 | -2.79 | 1.80 | 0.93 | 0.86 | — | 9756 | 1212 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YRR | 34065 | 2023-11-19 | 2022-08-10 | 4.3 | 4.40 | 4.25 | 4.2 | 0.013 | 2.13 | 5.0 | 0.11 | 22.39 | 0.01 | 1.874 | 15.92 | 26.25 | 21.4 | 73.0 | 5.6 | -5.95 | 0.67 | 0.46 | — | 4.2 | 0.020 | 1.13 | 0.0 | 0.04 | 14.65 | 0.01 | 1.852 | 31.43 | 0.13 | 18.2 | 81.0 | 0.9 | -4.34 | 1.26 | 0.69 | 0.53 | — | 24937 | 1697 | 4 | 0 | 0 | 0 | 11408 | logfile |
✔ | 7N9Y | 24264 | 2023-11-14 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.81 | 0.00 | 2.550 | 7.73 | 0.00 | 18.2 | 81.3 | 0.5 | -4.24 | 2.61 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CET | 7465 | 2023-11-16 | 2018-02-12 | 4.4 | 4.41 | — | 4.3 | 0.007 | 1.42 | 0.0 | 0.07 | 13.40 | 0.01 | 2.251 | 8.50 | 0.96 | 19.7 | 80.1 | 0.2 | -5.52 | 0.67 | 0.62 | — | 4.3 | 0.004 | 0.94 | 0.0 | 0.05 | 14.01 | 0.01 | 2.112 | 19.33 | 0.06 | 18.7 | 81.3 | 0.0 | -3.78 | 1.59 | 0.68 | 0.63 | — | 14012 | 1741 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoP | 32654 | 2023-11-13 | 2022-01-22 | 3.51 | 2.51 | — | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 10.83 | 0.00 | 2.203 | 10.97 | 9.21 | 11.4 | 88.6 | 0.0 | -4.81 | 0.64 | 0.66 | 1.96 | 3.4 | 0.005 | 0.85 | 0.0 | 0.05 | 14.87 | 0.01 | 2.063 | 24.57 | 0.72 | 18.5 | 81.5 | 0.0 | -3.82 | 1.29 | 0.65 | 0.69 | 2.10 | 5107 | 669 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N95 | 24250 | 2023-11-14 | 2021-06-16 | 4.1 | 3.45 | — | 2.1 | 0.002 | 0.74 | 0.0 | 0.00 | 5.05 | 0.00 | 2.573 | 0.10 | 0.00 | 7.1 | 92.3 | 0.6 | -1.14 | 0.78 | 0.70 | — | 2.1 | 0.004 | 1.01 | 0.0 | 0.00 | 4.97 | 0.00 | 2.503 | 6.53 | 0.00 | 18.1 | 81.7 | 0.2 | -3.27 | 1.81 | 0.85 | 0.83 | — | 7299 | 2433 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WRG | 6679 | 2023-11-16 | 2016-12-01 | 4.3 | 4.45 | — | 4.3 | 0.007 | 1.40 | 0.0 | 0.07 | 12.06 | 0.01 | 2.191 | 9.91 | 0.53 | 18.0 | 81.4 | 0.7 | -5.05 | 0.66 | 0.69 | — | 4.3 | 0.004 | 1.00 | 0.0 | 0.05 | 12.31 | 0.00 | 2.019 | 20.07 | 0.00 | 18.0 | 81.8 | 0.1 | -3.25 | 1.52 | 0.68 | 0.76 | — | 16317 | 2208 | 3 | 0 | 0 | 0 | 0 | logfile |