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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5XLo | 6729 | 2023-12-10 | 2017-05-11 | 3.8 | 3.91 | — | 3.9 | 0.009 | 1.37 | 0.0 | 0.06 | 15.08 | 0.01 | 2.050 | 13.55 | 0.29 | 17.3 | 81.9 | 0.8 | -6.02 | 0.58 | 0.64 | 0.55 | 3.9 | 0.004 | 0.92 | 0.0 | 0.04 | 18.17 | 0.01 | 2.072 | 21.53 | 0.81 | 17.0 | 82.5 | 0.5 | -4.05 | 1.61 | 0.62 | 0.66 | 0.94 | 15413 | 2073 | 9 | 38 | 0 | 0 | 0 | logfile |
✔ | 6RTB | 4996 | 2023-12-07 | 2019-05-22 | 3.46 | 3.57 | — | 3.5 | 0.009 | 1.23 | 0.0 | 0.07 | 15.08 | 0.01 | 2.122 | 6.27 | 2.61 | 18.9 | 80.9 | 0.2 | -4.64 | 0.62 | 0.79 | 4.22 | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 15.59 | 0.00 | 2.167 | 12.95 | 1.53 | 17.5 | 82.5 | 0.0 | -4.08 | 0.60 | 0.62 | 0.80 | 3.79 | 4681 | 699 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D1B | 27121 | 2023-12-08 | 2022-05-27 | 3.57 | 3.85 | 3.45 | 3.8 | 0.006 | 1.09 | 0.0 | 0.05 | 14.42 | 0.01 | 2.084 | 19.71 | 0.28 | 24.1 | 75.9 | 0.0 | -6.32 | 0.76 | 0.81 | 2.61 | 3.8 | 0.004 | 0.86 | 0.0 | 0.04 | 16.37 | 0.01 | 2.120 | 12.64 | 0.42 | 17.4 | 82.6 | 0.0 | -4.80 | 2.74 | 0.72 | 0.78 | 2.09 | 6724 | 874 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RT0 | 4994 | 2023-12-07 | 2019-05-22 | 3.1 | 3.18 | — | 3.1 | 0.006 | 0.97 | 0.0 | 0.06 | 14.23 | 0.00 | 2.415 | 2.11 | 1.06 | 11.5 | 88.5 | 0.0 | -3.76 | 0.71 | 0.84 | 6.51 | 3.1 | 0.009 | 0.89 | 0.0 | 0.06 | 16.41 | 0.00 | 2.255 | 5.41 | 0.43 | 17.4 | 82.6 | 0.0 | -4.13 | 0.82 | 0.72 | 0.86 | 5.76 | 4925 | 735 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MLZ | 23914 | 2023-12-07 | 2021-04-29 | 3.71 | 4.27 | 3.83 | 3.9 | 0.004 | 0.82 | 0.0 | 0.05 | 13.11 | 0.01 | 2.150 | 18.13 | 0.00 | 17.4 | 82.5 | 0.2 | -4.08 | 0.80 | 0.62 | 1.39 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 14.99 | 0.00 | 2.109 | 16.66 | 0.37 | 17.2 | 82.6 | 0.2 | -4.27 | 0.50 | 0.82 | 0.65 | 1.16 | 4864 | 624 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 6BX3 | 7303 | 2023-12-09 | 2017-12-16 | 4.3 | 4.71 | — | 4.4 | 0.007 | 1.49 | 0.0 | 0.08 | 12.65 | 0.01 | 1.094 | 24.88 | 0.97 | 18.8 | 81.2 | 0.1 | -5.00 | 0.74 | 0.72 | — | 4.4 | 0.004 | 0.86 | 0.0 | 0.05 | 13.11 | 0.00 | 2.070 | 24.58 | 0.00 | 17.2 | 82.7 | 0.1 | -3.48 | 1.39 | 0.74 | 0.72 | — | 10456 | 1413 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Ri4 | 24473 | 2023-12-09 | 2021-07-19 | 3.4 | 3.80 | — | 3.7 | 0.003 | 0.74 | 0.0 | 0.04 | 17.06 | 0.00 | 2.238 | 9.59 | 3.70 | 13.8 | 86.0 | 0.2 | -5.39 | 0.71 | 0.77 | 0.92 | 3.7 | 0.004 | 0.79 | 0.0 | 0.05 | 17.86 | 0.00 | 2.141 | 12.80 | 0.77 | 17.2 | 82.7 | 0.1 | -3.47 | 0.52 | 0.72 | 0.81 | 1.76 | 12248 | 1578 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E5F | 27911 | 2023-12-09 | 2022-08-22 | 3.8 | 4.11 | 3.84 | 4.0 | 0.017 | 1.17 | 0.0 | 0.06 | 16.51 | 0.01 | 2.029 | 22.93 | 0.00 | 12.7 | 87.3 | 0.0 | -2.96 | 0.71 | 0.84 | 3.52 | 4.1 | 0.007 | 0.96 | 1.0 | 0.05 | 16.96 | 0.00 | 2.120 | 12.79 | 0.60 | 17.3 | 82.7 | 0.1 | -3.44 | 0.48 | 0.72 | 0.86 | 3.46 | 11890 | 1465 | 5 | 0 | 20 | 0 | 0 | logfile |
✔ | 6B40 | 7046 | 2023-12-11 | 2017-09-25 | 4.3 | 4.48 | — | 4.4 | 0.007 | 1.13 | 0.0 | 0.06 | 16.85 | 0.01 | 2.269 | 8.08 | 0.00 | 18.8 | 81.0 | 0.2 | -5.22 | 0.76 | 0.70 | — | 4.4 | 0.004 | 0.82 | 0.0 | 0.04 | 17.63 | 0.00 | 2.117 | 19.19 | 0.00 | 17.2 | 82.8 | 0.0 | -3.19 | 2.11 | 0.80 | 0.77 | — | 16202 | 1800 | 12 | 100 | 42 | 0 | 0 | logfile |
✔ | 6SST | 10305 | 2023-12-07 | 2019-09-09 | 3.4 | 3.46 | — | 3.4 | 0.009 | 0.94 | 0.0 | 0.07 | 16.79 | 0.00 | 2.430 | 5.73 | 2.13 | 10.1 | 89.9 | 0.0 | -4.47 | 0.56 | 0.80 | 6.33 | 3.4 | 0.008 | 0.76 | 0.0 | 0.06 | 14.95 | 0.00 | 2.266 | 10.97 | 0.43 | 17.2 | 82.8 | 0.0 | -4.97 | 0.49 | 0.59 | 0.84 | 4.82 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SHS | 10204 | 2023-12-08 | 2019-08-08 | 4.4 | 4.36 | — | 4.3 | 0.009 | 1.02 | 0.0 | 0.06 | 12.04 | 0.00 | 2.341 | 25.68 | 0.00 | 21.1 | 78.9 | 0.0 | -5.87 | 0.69 | 0.62 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.05 | 12.95 | 0.00 | 2.164 | 8.10 | 0.00 | 17.1 | 82.9 | 0.0 | -5.36 | 1.68 | 0.69 | 0.65 | — | 7068 | 480 | 12 | 0 | 0 | 0 | 3408 | logfile |
✔ | 6L1U | 0803 | 2023-12-09 | 2019-09-30 | 3.37 | 3.54 | — | 3.5 | 0.011 | 0.90 | 0.0 | 0.06 | 15.32 | 0.00 | 2.138 | 15.24 | 0.00 | 15.8 | 84.2 | 0.0 | -6.06 | 0.47 | 0.83 | 2.58 | 3.5 | 0.007 | 0.76 | 0.0 | 0.05 | 16.50 | 0.00 | 2.159 | 13.05 | 1.18 | 17.0 | 83.0 | 0.0 | -4.98 | 1.98 | 0.48 | 0.85 | 2.64 | 10515 | 1500 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2023-12-10 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.05 | 12.57 | 0.01 | 2.086 | 22.39 | 0.00 | 16.4 | 83.4 | 0.1 | -3.83 | 1.16 | 0.85 | 0.76 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V4U | 21048 | 2023-12-08 | 2019-12-01 | 3.8 | 4.31 | — | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 9.64 | 0.00 | 2.273 | 4.54 | 0.00 | 6.1 | 93.9 | 0.0 | -3.58 | 0.73 | 0.61 | 1.20 | 4.1 | 0.005 | 0.88 | 0.0 | 0.05 | 13.39 | 0.01 | 2.103 | 18.42 | 0.81 | 16.6 | 83.4 | 0.0 | -2.30 | 0.90 | 0.77 | 0.69 | 1.61 | 7074 | 1106 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E14 | 27823 | 2023-12-09 | 2022-08-09 | 3.36 | 4.87 | 3.36 | 3.5 | 0.007 | 1.12 | 1.0 | 0.08 | 24.72 | 0.01 | 2.182 | 16.48 | 0.41 | 17.7 | 82.3 | 0.0 | -2.84 | 0.92 | 0.86 | 0.70 | 3.5 | 0.003 | 0.70 | 0.0 | 0.04 | 24.50 | 0.00 | 2.192 | 14.49 | 0.21 | 16.4 | 83.6 | 0.0 | -2.49 | 0.32 | 0.92 | 0.86 | 0.81 | 12442 | 1161 | 16 | 160 | 2 | 0 | 0 | logfile |
✔ | 6SH5 | 10194 | 2023-12-09 | 2019-08-05 | 4.6 | 4.70 | — | 4.5 | 0.005 | 0.97 | 0.0 | 0.05 | 5.65 | 0.01 | 2.474 | 2.35 | 0.00 | 9.0 | 91.0 | 0.0 | -3.63 | 0.80 | 0.76 | — | 4.5 | 0.004 | 0.82 | 0.0 | 0.04 | 5.28 | 0.00 | 2.265 | 5.49 | 0.00 | 16.4 | 83.6 | 0.0 | -2.90 | 1.64 | 0.82 | 0.82 | — | 11529 | 2338 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NY1 | 8994 | 2023-12-09 | 2019-02-10 | 4.2 | 4.56 | — | 4.3 | 0.007 | 1.11 | 0.0 | 0.06 | 23.29 | 0.01 | 2.099 | 9.52 | 0.33 | 18.6 | 81.0 | 0.4 | -4.84 | 0.80 | 0.80 | — | 4.4 | 0.003 | 0.70 | 0.0 | 0.04 | 22.15 | 0.00 | 2.149 | 14.41 | 0.00 | 16.1 | 83.7 | 0.1 | -2.07 | 0.58 | 0.79 | 0.78 | — | 9911 | 783 | 4 | 154 | 121 | 0 | 0 | logfile |
✔ | 7E23 | 30950 | 2023-12-07 | 2021-02-04 | 3.3 | 3.62 | — | 3.6 | 0.004 | 0.83 | 0.0 | 0.05 | 14.52 | 0.01 | 2.123 | 14.37 | 0.00 | 17.3 | 82.7 | 0.0 | -3.70 | 0.70 | 0.77 | 2.78 | 3.6 | 0.004 | 0.78 | 0.0 | 0.05 | 16.17 | 0.00 | 2.152 | 15.51 | 0.30 | 16.0 | 83.7 | 0.3 | -3.12 | 1.15 | 0.72 | 0.80 | 2.18 | 3133 | 403 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7DGZ | 30676 | 2023-12-09 | 2020-11-12 | 3.8 | 4.12 | — | 4.0 | 0.008 | 1.43 | 3.0 | 0.07 | 12.68 | 0.01 | 1.238 | 9.03 | 1.31 | 17.6 | 80.9 | 1.5 | -6.15 | 0.80 | 0.71 | 1.44 | 4.0 | 0.003 | 0.88 | 0.0 | 0.04 | 14.71 | 0.01 | 2.085 | 12.22 | 0.37 | 15.9 | 83.8 | 0.3 | -3.49 | 1.60 | 0.82 | 0.73 | 0.59 | 60921 | 7992 | 61 | 0 | 21 | 0 | 0 | logfile |
✔ | 6WUN | 21917 | 2023-12-09 | 2020-05-04 | 3.9 | 4.00 | — | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 13.70 | 0.00 | 2.166 | 14.26 | 1.14 | 18.4 | 81.6 | 0.0 | -6.35 | 0.68 | 0.80 | 1.75 | 3.9 | 0.005 | 0.78 | 0.0 | 0.04 | 14.77 | 0.00 | 2.028 | 12.03 | 0.38 | 16.1 | 83.8 | 0.1 | -3.62 | 0.57 | 0.68 | 0.80 | 1.47 | 10082 | 1326 | 4 | 0 | 0 | 0 | 0 | logfile |