Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i54	35191	2023-04-25	2023-01-24	3.95	4.70	4.01	4.1	0.013	1.03	0.0	0.05	18.00	0.01	2.207	13.04	0.98	12.8	86.8	0.4	-3.16	0.85	0.69	0.32	4.1	0.003	0.62	0.0	0.04	18.83	0.00	1.913	26.57	0.49	14.7	85.1	0.2	-3.14	0.57	0.86	0.72	0.61	19661	1113	4	67	0	0	9100	logfile
✔	7DGZ	30676	2023-04-21	2020-11-12	3.8	4.12	—	4.0	0.008	1.43	3.0	0.07	12.24	0.01	1.238	9.03	1.31	17.6	80.9	1.5	-6.15	0.80	0.71	1.44	3.9	0.003	0.87	0.0	0.04	14.39	0.01	2.084	11.40	0.37	14.7	85.1	0.3	-3.35	1.61	0.82	0.73	0.56	60921	7992	61	0	21	0	0	logfile
✔	7JG7	22313	2023-04-25	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.16	0.0	0.00	7.34	0.01	2.119	4.50	0.00	14.7	85.1	0.1	-2.00	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile
✔	6DVW	8919	2023-04-25	2018-06-25	4.3	4.35	—	4.3	0.008	1.19	0.0	0.06	11.88	0.01	1.840	5.62	0.87	15.9	83.7	0.4	-5.79	0.68	0.80	—	4.3	0.004	0.80	0.0	0.04	13.27	0.00	2.102	12.09	0.00	14.6	85.1	0.3	-1.90	0.87	0.67	0.80	—	21004	2576	4	0	0	0	0	logfile
✔	7X92	33064	2023-04-20	2022-03-15	4.1	5.14	4.05	4.5	0.005	0.74	1.0	0.06	14.75	0.01	2.106	12.50	0.27	14.5	85.5	0.0	-2.53	0.77	0.69	—	4.5	0.003	0.66	0.0	0.05	13.28	0.00	1.994	19.37	0.00	14.3	85.2	0.5	-2.95	1.21	0.78	0.76	—	6529	426	4	0	2	0	3171	logfile
✔	7AAV	11693	2023-04-27	2020-09-04	4.2	4.27	—	4.1	0.003	0.78	0.0	0.15	12.59	0.01	2.116	1.53	0.18	8.9	91.1	0.1	-6.29	0.76	0.77	—	4.1	0.005	0.77	0.0	0.05	13.56	0.00	1.779	7.80	0.00	14.8	85.2	0.0	-1.34	0.53	0.78	0.80	—	25867	3970	19	181	3	0	0	logfile
✔	6XRE	22294	2023-04-25	2020-07-12	4.6	7.52	—	4.5	0.011	1.16	1.0	0.07	10.73	0.01	0.771	5.15	0.24	7.9	91.5	0.6	-3.72	0.62	0.29	—	4.5	0.004	0.75	0.0	0.04	11.99	0.01	1.838	19.46	0.00	14.8	85.2	0.0	-2.98	0.93	0.85	0.65	—	68542	4289	18	0	9	0	34248	logfile
✔	7DH0	30677	2023-04-21	2020-11-12	4.2	4.70	—	4.5	0.007	1.28	0.0	0.06	11.24	0.01	1.514	6.99	0.60	16.3	83.1	0.6	-5.67	0.84	0.72	—	4.5	0.003	0.82	0.0	0.04	12.28	0.00	2.084	12.52	0.02	14.4	85.3	0.2	-2.95	0.83	0.85	0.73	—	60091	7904	57	0	17	0	0	logfile
✔	6oRo	20176	2023-04-25	2019-04-30	3.9	4.21	3.87	4.2	0.009	1.32	3.0	0.09	11.96	0.01	2.048	4.78	2.93	13.1	86.4	0.6	-5.30	0.62	0.84	2.16	4.2	0.005	0.88	0.0	0.05	15.52	0.00	2.194	11.28	1.15	14.6	85.3	0.2	-3.65	0.63	0.62	0.85	2.09	20085	2415	45	0	96	0	0	logfile
✔	7WTJ	32788	2023-04-19	2022-02-04	4.2	4.07	—	4.1	0.006	0.85	3.0	0.05	13.86	0.01	2.242	10.88	0.58	8.9	91.1	0.0	-2.21	0.55	0.79	—	4.0	0.005	0.75	0.0	0.05	14.22	0.00	2.204	11.35	0.00	14.6	85.4	0.0	-2.22	0.37	0.55	0.81	—	3261	424	3	0	0	0	0	logfile
✔	7JHY	22340	2023-04-24	2020-07-21	3.9	3.99	—	4.0	0.005	1.14	0.0	0.06	16.51	0.01	2.185	4.92	0.00	14.8	85.0	0.2	-2.88	0.53	0.68	1.32	4.0	0.003	0.82	0.0	0.04	17.99	0.01	2.162	12.58	0.54	14.6	85.4	0.0	-2.07	2.02	0.55	0.71	0.82	16597	2083	12	31	0	0	0	logfile
✔	5N8o	3601	2023-04-22	2017-02-23	3.9	4.00	—	3.9	0.008	1.26	0.0	0.07	11.99	0.01	1.878	9.72	0.00	15.0	84.8	0.2	-5.69	0.75	0.77	1.84	3.9	0.016	1.00	0.0	0.05	16.03	0.01	2.114	17.44	0.77	14.4	85.4	0.1	-2.79	2.29	0.78	0.79	0.84	11362	1432	2	18	0	0	0	logfile
✔	5X5F	6707	2023-04-27	2017-02-15	4.2	4.29	—	4.2	0.011	1.70	6.0	0.08	14.74	0.01	1.433	32.76	5.99	13.0	85.5	1.4	-3.79	0.66	0.57	—	4.2	0.004	1.02	0.0	0.05	12.95	0.01	2.030	23.39	0.00	14.2	85.5	0.3	-2.44	1.10	0.72	0.71	—	26422	3423	3	0	0	0	0	logfile
✔	7N64	24193	2023-04-20	2021-06-07	4.2	3.94	—	3.9	0.009	1.06	0.0	0.06	15.21	0.01	2.157	36.86	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.005	0.83	0.0	0.05	13.92	0.01	2.089	23.18	0.13	14.5	85.5	0.0	-2.77	0.52	0.64	0.69	—	7189	906	7	0	7	0	0	logfile
✔	7Uo5	26640	2023-04-23	2022-04-12	3.1	3.62	3.02	3.0	0.015	2.22	0.0	0.12	27.60	0.06	2.328	2.33	1.02	6.4	92.7	0.9	-2.73	0.80	0.60	3.19	3.0	0.005	0.85	0.0	0.05	26.39	0.01	1.786	36.13	0.00	13.6	85.5	0.9	-3.83	1.53	0.81	0.66	1.12	13979	112	2	373	7	0	5024	logfile
✔	7E23	30950	2023-04-19	2021-02-04	3.3	3.62	—	3.6	0.004	0.83	0.0	0.05	14.45	0.01	2.123	14.37	0.00	17.3	82.7	0.0	-3.70	0.70	0.77	2.78	3.6	0.004	0.75	0.0	0.05	16.24	0.01	2.162	14.04	0.30	14.2	85.5	0.3	-3.04	1.16	0.71	0.80	1.62	3133	403	4	0	1	0	0	logfile
✔	7X8Z	33061	2023-04-20	2022-03-15	4.1	4.99	4.12	4.4	0.003	0.58	0.0	0.04	13.91	0.00	2.078	11.39	0.00	12.6	87.1	0.2	-2.94	0.80	0.68	—	4.4	0.005	0.66	0.0	0.04	13.88	0.01	1.922	18.01	0.00	14.3	85.5	0.2	-3.15	0.87	0.82	0.79	—	6480	426	4	0	1	0	3147	logfile
✔	7KiY	22890	2023-04-25	2020-10-25	2.92	3.47	3.34	3.3	0.008	0.93	6.0	0.05	14.30	0.01	1.366	9.02	0.85	15.7	83.6	0.8	-4.17	0.80	0.82	2.33	3.3	0.003	0.77	0.0	0.04	16.50	0.00	2.198	7.58	1.39	14.3	85.6	0.1	-0.95	1.37	0.80	0.86	1.77	19870	2376	3	0	0	0	0	logfile
✔	5LL6	4071	2023-04-20	2016-07-26	3.9	4.01	—	3.9	0.012	1.50	6.0	0.11	19.04	0.01	0.924	4.96	2.53	10.6	85.7	3.7	-3.86	0.69	0.82	1.20	3.9	0.009	1.04	0.0	0.05	19.21	0.01	1.715	25.88	1.94	13.6	85.6	0.9	-3.02	0.89	0.70	0.81	0.98	55262	3429	20	1325	5	0	0	logfile
✔	7Q5B	13831	2023-04-26	2021-11-03	3.98	3.20	—	3.1	0.004	0.91	0.0	0.05	21.10	0.01	2.231	9.48	0.10	13.2	86.5	0.2	-2.85	0.72	0.60	0.71	3.1	0.004	0.74	0.0	0.04	22.37	0.00	2.093	19.55	0.70	14.2	85.7	0.1	-2.33	1.64	0.74	0.65	0.48	21746	2255	13	168	0	0	0	logfile

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