Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K08	22589	2023-08-26	2020-09-03	4.7	4.26	—	4.2	0.025	2.31	9.0	0.11	11.10	0.02	2.175	6.16	0.00	5.0	94.8	0.2	-0.14	0.70	0.60	—	4.2	0.003	0.72	0.0	0.04	14.49	0.01	1.964	15.43	0.00	12.3	87.7	0.0	-2.19	1.59	0.73	0.68	—	48735	2988	9	0	0	0	24606	logfile
✔	7WDF	32437	2023-08-21	2021-12-21	3.9	4.20	—	4.0	0.002	0.51	0.0	0.04	7.63	0.00	2.170	7.49	0.00	4.3	95.6	0.1	-1.73	0.54	0.40	0.73	4.0	0.005	0.84	0.0	0.05	14.26	0.01	2.096	22.48	0.45	5.3	94.7	0.0	-1.16	1.62	0.76	0.72	0.46	31998	4101	7	0	0	0	0	logfile
✔	5Z3U	6882	2023-08-14	2018-01-08	4.31	4.01	—	3.9	0.011	0.98	0.0	0.05	24.03	0.01	2.030	18.98	0.09	9.0	91.0	0.0	-5.01	0.77	0.81	—	3.9	0.004	0.64	0.0	0.04	24.58	0.00	2.048	11.49	0.00	5.1	94.9	0.0	0.12	0.79	0.75	0.77	—	16766	1341	12	292	3	0	0	logfile
✔	7W4D	32301	2023-08-15	2021-11-27	3.0	3.05	—	3.0	0.008	0.84	0.0	0.04	18.72	0.01	2.145	8.36	1.89	3.8	96.1	0.1	0.77	0.78	0.88	3.09	3.0	0.003	0.56	0.0	0.04	17.89	0.00	2.145	7.39	2.57	3.8	96.2	0.0	1.12	0.33	0.78	0.88	3.00	68181	8270	69	0	45	0	0	logfile
✔	7S15	24794	2023-08-09	2021-09-01	3.8	4.41	—	4.2	0.007	0.90	0.0	0.05	17.81	0.01	2.174	12.66	0.00	12.0	88.0	0.0	-4.51	0.51	0.77	1.80	4.2	0.003	0.72	0.0	0.04	18.81	0.00	2.276	12.66	0.58	7.4	92.6	0.0	-1.02	0.67	0.49	0.76	0.81	3207	382	1	0	1	0	0	logfile
✔	6VYL	21463	2023-08-13	2020-02-27	3.4	3.43	—	3.4	0.008	0.85	0.0	0.05	14.42	0.01	2.293	4.68	0.48	5.1	94.9	0.0	-4.60	0.72	0.84	2.99	3.4	0.002	0.52	0.0	0.04	15.80	0.00	2.156	8.64	0.21	3.4	96.6	0.0	-0.15	0.53	0.67	0.83	2.63	13671	1792	7	0	0	0	0	logfile
✔	7WK4	32558	2023-08-20	2022-01-08	3.69	3.97	—	3.8	0.005	0.86	2.0	0.06	14.66	0.01	2.338	3.94	0.49	3.4	96.4	0.2	-4.28	0.68	0.60	0.56	3.8	0.004	0.75	0.0	0.05	16.35	0.00	2.046	16.91	0.46	4.9	95.1	0.0	-1.46	0.89	0.71	0.68	0.73	29541	3743	4	0	0	0	0	logfile
✔	7TDo	25837	2023-08-15	2022-01-02	3.15	4.00	—	3.7	0.004	0.57	0.0	0.04	14.51	0.00	2.284	4.72	0.00	4.1	95.9	0.0	-1.16	0.73	0.68	1.65	3.7	0.002	0.60	0.0	0.04	14.65	0.00	2.256	4.79	0.00	3.6	96.4	0.0	1.25	0.61	0.85	0.84	1.82	19572	2520	12	0	6	0	0	logfile
✔	6RAZ	4788	2023-08-24	2019-04-08	4.46	4.58	4.41	4.5	0.011	1.60	29.0	0.14	18.54	0.01	1.308	23.33	6.20	17.7	81.4	1.0	-5.70	0.65	0.65	—	4.5	0.004	0.87	0.0	0.05	15.47	0.01	2.098	21.18	0.15	13.2	86.7	0.0	-3.30	3.61	0.66	0.65	—	38294	4764	18	23	6	0	0	logfile
✔	6WLV	21843	2023-08-09	2020-04-20	3.45	3.67	—	3.6	0.004	0.56	0.0	0.04	13.21	0.00	2.211	9.21	0.00	4.7	95.3	0.0	-0.61	0.80	0.82	2.72	3.6	0.003	0.63	0.0	0.04	15.52	0.00	2.134	7.99	0.47	3.5	96.5	0.0	2.45	1.27	0.79	0.83	2.27	4111	512	3	0	3	0	0	logfile
✔	6T9L	10415	2023-08-15	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.54	0.00	2.136	7.11	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.003	0.61	0.0	0.04	24.88	0.00	2.026	8.92	0.30	2.4	97.6	0.0	1.15	0.81	0.84	0.83	1.11	18157	1532	18	290	8	0	0	logfile
✔	7W1V	32257	2023-08-15	2021-11-20	3.0	3.04	—	3.0	0.008	0.81	1.0	0.04	18.73	0.01	2.140	8.28	1.69	3.1	96.9	0.0	1.09	0.78	0.87	3.16	3.0	0.003	0.55	0.0	0.04	17.92	0.00	2.143	7.74	2.51	3.4	96.5	0.0	1.09	0.29	0.78	0.87	3.11	68209	8270	67	0	46	0	0	logfile
✔	7UDB	26455	2023-08-12	2022-03-18	3.5	3.64	3.39	3.6	0.003	0.50	0.0	0.04	15.55	0.00	2.182	6.46	0.14	2.8	97.2	0.0	1.74	0.77	0.82	1.51	3.6	0.003	0.55	0.0	0.04	16.61	0.00	2.224	7.31	0.00	2.7	97.3	0.0	2.23	1.14	0.77	0.83	1.67	6472	807	3	0	0	0	0	logfile
✔	7KFU	22856	2023-08-17	2020-10-14	3.9	3.92	—	3.8	0.006	0.83	0.0	0.05	14.44	0.01	1.548	6.32	0.00	4.9	95.1	0.0	-1.04	0.73	0.72	1.56	3.8	0.003	0.64	0.0	0.04	16.72	0.00	2.093	9.99	0.25	4.1	95.9	0.0	0.62	2.55	0.76	0.74	1.30	21848	2674	6	0	0	0	0	logfile
✔	6EZ8	3984	2023-08-16	2017-11-14	4.0	4.07	—	4.1	0.007	1.29	0.0	0.06	11.10	0.01	2.277	4.82	0.83	6.1	93.6	0.3	-5.17	0.61	0.77	—	4.0	0.003	0.76	0.0	0.04	16.08	0.00	2.154	8.27	0.57	4.8	95.2	0.0	-1.93	1.62	0.62	0.81	—	20491	2621	2	0	0	0	0	logfile
✔	6HCY	0199	2023-08-12	2018-08-17	3.1	3.48	3.04	3.4	0.015	1.26	0.0	0.06	13.94	0.01	2.017	2.66	0.79	6.2	93.8	0.0	-6.30	0.67	0.89	5.10	3.4	0.003	0.66	0.0	0.04	14.75	0.00	2.142	6.41	0.26	4.5	95.5	0.0	0.32	1.75	0.71	0.91	3.40	11007	1308	6	0	15	0	0	logfile
✔	7RU9	24700	2023-08-12	2021-08-16	3.3	2.93	3.26	3.2	0.003	0.59	0.0	0.07	14.36	0.01	1.899	7.92	0.00	2.9	97.1	0.0	1.87	0.65	0.78	2.93	3.2	0.005	0.62	0.0	0.04	16.08	0.01	1.889	9.00	0.16	3.4	96.6	0.0	1.26	0.60	0.74	0.86	2.93	11595	1448	10	0	5	0	0	logfile
✔	6M54	30084	2023-08-22	2020-03-09	2.4	2.57	—	2.5	0.012	1.15	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.005	0.68	0.0	0.05	16.60	0.00	2.395	0.48	0.90	4.0	96.0	0.0	3.36	0.28	0.81	0.91	3.74	33382	4104	38	0	6	8	0	logfile
✔	7UDC	26456	2023-08-12	2022-03-18	3.7	3.83	3.54	3.8	0.003	0.54	0.0	0.04	14.90	0.00	2.200	7.86	0.28	3.3	96.7	0.0	1.79	0.71	0.80	1.93	3.8	0.003	0.54	0.0	0.04	16.83	0.00	2.095	7.08	0.42	2.9	97.1	0.0	2.31	0.37	0.76	0.83	1.62	6425	806	3	0	0	0	0	logfile
✔	6WVR	21924	2023-08-19	2020-05-06	2.9	3.03	2.92	3.0	0.013	1.97	4.0	0.10	16.17	0.02	1.964	0.78	0.20	1.7	98.3	0.0	-2.06	0.75	0.78	3.84	3.0	0.004	0.63	0.0	0.04	17.16	0.00	1.793	7.25	1.57	2.8	97.2	0.0	0.10	1.61	0.74	0.84	3.56	26744	1712	8	2	6	0	13046	logfile

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