Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K8C	22726	2022-04-05	2020-09-26	4.27	4.22	—	4.2	0.004	0.84	2.0	0.05	13.70	0.01	2.196	12.83	0.85	3.2	96.8	0.0	0.14	0.47	0.56	—	4.2	0.003	0.80	0.0	0.04	13.55	0.01	2.215	13.63	0.17	3.6	96.4	0.0	0.67	0.60	0.50	0.61	—	5524	723	1	0	0	0	0	logfile
✔	7K8B	22725	2022-04-04	2020-09-26	2.94	2.86	—	3.1	0.005	0.83	2.0	0.05	14.13	0.01	2.214	14.30	0.68	5.5	94.5	0.0	-0.97	0.41	0.61	1.17	3.1	0.003	0.79	0.0	0.04	16.91	0.01	2.147	15.10	2.36	5.4	94.6	0.0	-0.14	1.19	0.42	0.63	0.64	5543	726	1	0	0	0	0	logfile
✔	7VH1	31983	2022-04-05	2021-09-20	4.2	4.15	—	4.0	0.009	1.32	0.0	0.07	12.24	0.01	2.222	5.93	0.74	11.9	87.8	0.2	-5.32	0.79	0.75	—	4.0	0.003	0.74	0.0	0.04	12.70	0.00	2.140	10.71	0.00	8.8	91.2	0.0	-1.93	3.32	0.79	0.75	—	13156	1661	2	0	2	0	0	logfile
✔	7JZY	22584	2022-04-07	2020-09-02	3.6	3.61	—	3.6	0.009	0.96	0.0	0.05	16.34	0.01	2.236	5.56	0.85	7.0	93.0	0.0	-3.78	0.81	0.85	2.54	3.5	0.006	0.89	1.0	0.04	17.32	0.00	1.653	12.31	0.09	5.9	94.1	0.0	-0.96	0.49	0.81	0.84	2.12	24539	3024	12	61	0	0	0	logfile
✔	7PEB	13351	2022-04-07	2021-08-09	3.67	4.11	—	3.9	0.002	0.52	0.0	0.04	13.94	0.00	2.245	4.50	2.69	5.1	94.9	0.1	-2.66	0.71	0.73	1.45	3.9	0.003	0.71	0.0	0.04	15.49	0.00	2.078	11.11	0.41	3.6	96.4	0.0	0.89	2.13	0.72	0.75	1.13	29140	3611	5	0	57	0	0	logfile
✔	7E3L	30983	2022-04-08	2021-02-09	3.6	4.10	—	3.6	0.006	0.87	4.0	0.05	13.31	0.01	2.193	9.04	0.32	8.9	91.0	0.1	-2.95	0.68	0.53	2.26	3.7	0.003	0.65	0.0	0.04	14.71	0.00	2.012	9.54	0.06	4.4	95.6	0.0	-0.32	0.76	0.85	0.86	2.09	32639	4266	12	0	20	0	0	logfile
✔	7PE8	13348	2022-04-07	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.45	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.002	0.52	0.0	0.04	12.70	0.00	2.206	7.04	0.17	3.6	96.4	0.0	0.72	0.49	0.80	0.83	1.84	29291	3832	8	0	3	0	0	logfile
✔	7FD8	31536	2022-04-05	2021-07-16	3.8	3.98	3.73	3.6	0.008	1.41	2.0	0.11	11.94	0.00	2.327	5.06	0.61	8.6	91.3	0.1	-2.25	0.73	0.82	2.28	3.6	0.003	0.65	0.0	0.04	13.67	0.00	2.145	12.10	0.15	4.9	95.1	0.0	0.08	0.61	0.73	0.84	2.07	12152	1528	4	0	6	0	0	logfile
✔	7K8D	22728	2022-04-05	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.7	0.003	0.83	0.0	0.04	13.33	0.01	2.120	13.72	0.00	4.3	95.7	0.0	0.70	1.45	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	7oiD	12926	2022-04-09	2021-05-11	3.7	3.36	—	3.3	0.013	1.33	2.0	0.07	17.19	0.01	1.521	9.44	0.07	6.8	93.2	0.0	-2.22	0.73	0.74	2.43	3.3	0.010	0.91	1.0	0.05	17.54	0.01	1.520	17.23	0.28	5.2	94.8	0.0	-0.83	1.17	0.72	0.73	1.71	101125	8217	61	1601	5	0	0	logfile
✔	6YT5	10912	2022-04-09	2020-04-23	3.0	2.67	—	3.3	0.010	0.73	0.0	0.05	15.51	0.00	2.196	13.76	0.15	8.0	92.0	0.0	-4.28	0.85	0.81	2.08	3.3	0.004	0.76	0.0	0.04	17.73	0.01	2.144	11.76	1.90	3.6	96.4	0.0	0.71	0.54	0.83	0.81	1.27	39078	5040	12	0	0	0	0	logfile
✔	7EY4	31377	2022-04-04	2021-05-29	3.69	3.90	—	3.9	0.007	0.89	0.0	0.05	14.08	0.01	2.150	10.63	0.20	13.5	86.1	0.4	-2.54	0.63	0.78	3.57	3.9	0.004	0.83	0.0	0.05	16.37	0.01	2.169	10.52	1.20	10.3	89.7	0.0	-1.69	1.30	0.65	0.81	3.22	4683	585	5	0	3	0	0	logfile
✔	7EY5	31378	2022-04-04	2021-05-29	3.4	3.68	—	3.5	0.005	0.81	0.0	0.05	13.84	0.01	2.161	11.66	0.00	12.9	87.1	0.0	-3.63	0.68	0.82	2.63	3.5	0.004	0.79	0.0	0.05	15.39	0.01	2.085	11.46	0.36	10.0	90.0	0.0	-2.46	0.42	0.68	0.84	1.98	5072	648	5	0	0	0	0	logfile
✔	7PEA	13350	2022-04-04	2021-08-09	4.07	4.50	—	4.2	0.002	0.47	0.0	0.04	14.27	0.00	2.239	3.97	4.24	4.7	95.3	0.0	-2.53	0.84	0.72	—	4.2	0.003	0.65	0.0	0.04	13.42	0.00	2.142	11.58	0.00	3.4	96.6	0.0	0.63	1.51	0.86	0.77	—	58252	7222	10	0	114	0	0	logfile
✔	7EY0	31374	2022-04-04	2021-05-29	3.2	3.42	—	3.4	0.007	1.01	5.0	0.06	14.51	0.01	2.105	17.83	3.08	12.2	87.3	0.4	-2.42	0.55	0.73	3.30	3.4	0.004	0.76	0.0	0.04	15.78	0.01	2.126	14.49	0.46	6.8	93.2	0.0	-1.42	1.71	0.58	0.78	2.82	5963	755	6	0	0	0	0	logfile
✔	7MC0	23752	2022-04-04	2021-04-01	3.3	3.73	—	3.7	0.012	1.62	8.0	0.10	12.73	0.01	1.925	7.84	1.19	3.9	95.8	0.3	-0.86	0.65	0.81	2.48	3.7	0.003	0.62	0.0	0.04	14.66	0.00	2.209	5.84	0.13	3.9	96.1	0.0	0.90	1.05	0.65	0.82	2.10	7092	931	4	0	0	0	0	logfile
✔	7E3K	30982	2022-04-08	2021-02-09	3.9	4.65	—	3.7	0.008	0.94	1.0	0.07	12.93	0.01	2.011	12.94	0.12	7.9	92.0	0.1	-1.92	0.71	0.59	1.92	3.7	0.011	0.99	1.0	0.04	14.31	0.01	1.727	13.48	0.15	5.4	94.6	0.0	-0.61	2.57	0.86	0.86	1.79	32539	4278	12	0	22	0	0	logfile
✔	7oiZ	12936	2022-04-09	2021-05-13	2.9	3.30	—	3.3	0.007	0.85	1.0	0.05	14.09	0.02	1.986	3.75	0.07	3.5	96.4	0.1	-0.63	0.83	0.86	2.92	3.3	0.004	0.66	0.0	0.04	14.47	0.01	1.848	7.72	1.94	3.7	96.3	0.0	0.31	0.36	0.79	0.86	2.43	140295	5604	64	4472	311	0	0	logfile
✔	7PE9	13349	2022-04-08	2021-08-09	3.7	4.12	—	3.9	0.003	0.55	0.0	0.04	14.29	0.00	2.250	6.21	1.33	3.7	96.3	0.0	-0.63	0.81	0.81	1.47	3.9	0.007	0.80	1.0	0.04	15.68	0.00	2.166	9.35	0.10	3.7	96.3	0.0	0.73	1.72	0.82	0.83	1.04	31076	4043	8	0	3	0	0	logfile
✔	7EG0	31103	2022-04-05	2021-03-23	3.4	3.09	—	3.3	0.015	1.13	0.0	0.05	14.94	0.00	1.975	20.60	0.12	13.9	86.0	0.1	-2.98	0.74	0.79	2.89	3.3	0.003	0.63	0.0	0.04	16.59	0.00	1.988	8.14	0.30	9.3	90.7	0.0	-0.20	2.08	0.77	0.82	2.70	15246	1878	8	0	8	0	0	logfile

• Page 1 of 366
• next →