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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7QUQ | 14151 | 2023-02-23 | 2022-01-18 | 2.6 | 2.44 | — | 2.8 | 0.009 | 0.94 | 0.0 | 0.05 | 12.93 | 0.01 | 2.144 | 15.78 | 0.10 | 4.7 | 95.3 | 0.0 | -1.38 | 0.64 | 0.65 | 1.63 | 2.8 | 0.003 | 0.71 | 0.0 | 0.05 | 16.43 | 0.00 | 2.097 | 20.72 | 2.08 | 4.9 | 95.1 | 0.0 | -0.87 | 1.61 | 0.67 | 0.70 | 1.59 | 19095 | 2457 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7K0J | 22599 | 2023-02-18 | 2020-09-04 | 3.1 | 3.65 | — | 3.6 | 0.006 | 0.71 | 0.0 | 0.05 | 13.14 | 0.00 | 2.210 | 5.54 | 0.00 | 3.2 | 96.8 | 0.0 | 0.19 | 0.64 | 0.80 | 3.76 | 3.6 | 0.004 | 0.52 | 0.0 | 0.04 | 14.55 | 0.00 | 2.216 | 5.15 | 0.12 | 2.6 | 97.4 | 0.0 | 1.07 | 0.40 | 0.63 | 0.80 | 3.33 | 7683 | 977 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7CWM | 30483 | 2023-02-27 | 2020-08-29 | 3.6 | 4.19 | — | 3.6 | 0.008 | 1.04 | 2.0 | 0.07 | 9.90 | 0.01 | 1.512 | 22.14 | 0.54 | 7.7 | 92.3 | 0.1 | -3.56 | 0.73 | 0.65 | 1.87 | 3.6 | 0.003 | 0.63 | 0.0 | 0.04 | 12.51 | 0.00 | 2.218 | 11.92 | 0.09 | 5.1 | 94.9 | 0.0 | -1.05 | 0.78 | 0.83 | 0.79 | 1.63 | 30772 | 3883 | 26 | 0 | 44 | 0 | 0 | logfile |
✔ | 6QEX | 4539 | 2023-02-21 | 2019-01-08 | 3.6 | 3.83 | — | 3.8 | 0.009 | 1.23 | 0.0 | 0.10 | 15.49 | 0.01 | 1.406 | 8.33 | 0.73 | 6.0 | 93.9 | 0.1 | -3.39 | 0.62 | 0.73 | 1.80 | 3.8 | 0.002 | 0.62 | 0.0 | 0.04 | 16.34 | 0.00 | 2.191 | 8.82 | 0.51 | 3.6 | 96.4 | 0.0 | 0.52 | 0.58 | 0.65 | 0.72 | 1.35 | 13251 | 1627 | 4 | 0 | 22 | 0 | 0 | logfile |
✔ | 7K0Q | 22608 | 2023-02-18 | 2020-09-04 | 3.3 | 3.61 | — | 3.5 | 0.006 | 0.70 | 0.0 | 0.05 | 12.64 | 0.00 | 2.116 | 5.18 | 0.00 | 3.3 | 96.7 | 0.0 | 0.45 | 0.70 | 0.85 | 3.35 | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 14.21 | 0.00 | 2.189 | 4.84 | 0.11 | 2.5 | 97.5 | 0.0 | 1.24 | 1.46 | 0.73 | 0.87 | 2.87 | 8778 | 1107 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 8DD8 | 27336 | 2023-02-19 | 2022-06-17 | 3.4 | 3.50 | 3.43 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.62 | 0.00 | 2.211 | 7.30 | 0.00 | 4.0 | 95.9 | 0.1 | -0.65 | 0.81 | 0.81 | 2.33 | 3.4 | 0.002 | 0.53 | 0.0 | 0.04 | 16.75 | 0.00 | 2.198 | 10.11 | 0.00 | 4.0 | 96.0 | 0.0 | 0.42 | 1.22 | 0.83 | 0.84 | 1.99 | 10492 | 1272 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M30 | 23640 | 2023-02-19 | 2021-03-17 | 3.81 | 2.76 | 3.80 | 2.1 | 0.005 | 1.15 | 0.0 | 0.07 | 13.59 | 0.01 | 1.711 | 9.02 | 0.89 | 5.3 | 94.7 | 0.0 | -0.94 | 0.68 | 0.56 | 1.80 | 2.2 | 0.004 | 1.02 | 0.0 | 0.05 | 17.24 | 0.01 | 2.036 | 26.35 | 1.09 | 6.3 | 93.7 | 0.0 | -0.68 | 3.36 | 0.75 | 0.72 | 1.14 | 9191 | 1167 | 12 | 0 | 2 | 0 | 0 | logfile |
✔ | 8E94 | 27955 | 2023-02-22 | 2022-08-26 | 3.72 | 3.74 | 3.51 | 3.7 | 0.006 | 0.91 | 12.0 | 0.11 | 14.91 | 0.02 | 1.557 | 13.91 | 1.27 | 8.5 | 91.3 | 0.2 | -2.58 | 0.68 | 0.81 | 2.05 | 3.7 | 0.003 | 0.65 | 0.0 | 0.05 | 15.38 | 0.00 | 2.170 | 6.87 | 0.35 | 8.4 | 91.6 | 0.0 | -1.58 | 0.34 | 0.68 | 0.81 | 1.74 | 18816 | 2590 | 15 | 0 | 27 | 0 | 0 | logfile |
✔ | 7FDB | 31539 | 2023-02-24 | 2021-07-16 | 4.8 | 5.04 | 4.73 | 8.8 | 0.003 | 0.57 | 0.0 | 0.04 | 13.84 | 0.00 | 1.761 | 12.61 | 0.00 | 7.3 | 92.6 | 0.0 | -0.78 | 0.66 | 0.32 | — | 4.7 | 0.004 | 0.88 | 0.0 | 0.05 | 13.87 | 0.01 | 2.001 | 29.12 | 0.03 | 7.7 | 92.3 | 0.0 | -1.80 | 2.25 | 0.77 | 0.68 | — | 64497 | 8295 | 31 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VDA | 31912 | 2023-02-24 | 2021-09-06 | 2.26 | 2.04 | 2.42 | 2.1 | 0.003 | 0.53 | 0.0 | 0.04 | 17.67 | 0.00 | 2.142 | 7.99 | 2.20 | 2.6 | 97.4 | 0.0 | 1.67 | 0.66 | 0.82 | 4.06 | 2.0 | 0.002 | 0.54 | 0.0 | 0.04 | 18.07 | 0.00 | 2.051 | 8.99 | 2.60 | 2.1 | 97.9 | 0.0 | 1.12 | 0.41 | 0.66 | 0.84 | 4.19 | 23292 | 2976 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RA3 | 24334 | 2023-02-19 | 2021-06-29 | 3.24 | 3.47 | — | 3.3 | 0.005 | 0.91 | 0.0 | 0.05 | 13.68 | 0.00 | 2.074 | 6.99 | 0.35 | 7.1 | 92.9 | 0.0 | -1.87 | 0.69 | 0.80 | 2.16 | 3.3 | 0.004 | 0.74 | 0.0 | 0.04 | 15.98 | 0.00 | 2.111 | 14.04 | 0.62 | 5.4 | 94.6 | 0.0 | -0.79 | 0.82 | 0.69 | 0.83 | 1.29 | 10802 | 1381 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VRL | 21370 | 2023-02-17 | 2020-02-07 | 3.8 | 3.98 | 4.22 | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 14.02 | 0.00 | 2.159 | 10.57 | 0.00 | 4.9 | 95.1 | 0.0 | -3.12 | 0.49 | 0.69 | 1.43 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 16.18 | 0.00 | 2.038 | 17.54 | 0.46 | 6.6 | 93.4 | 0.0 | -1.10 | 0.78 | 0.50 | 0.70 | 1.42 | 6141 | 764 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6R4o | 4721 | 2023-02-19 | 2019-03-22 | 4.2 | 4.81 | — | 4.6 | 0.006 | 1.21 | 0.0 | 0.06 | 12.61 | 0.01 | 1.774 | 10.02 | 0.48 | 8.2 | 91.8 | 0.0 | -4.45 | 0.64 | 0.71 | — | 4.6 | 0.003 | 0.72 | 0.0 | 0.04 | 13.28 | 0.00 | 2.001 | 14.04 | 0.10 | 5.8 | 94.2 | 0.0 | 0.01 | 1.02 | 0.64 | 0.72 | — | 9602 | 1182 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7W94 | 32360 | 2023-02-25 | 2021-12-09 | 3.4 | 3.02 | — | 3.6 | 0.003 | 0.67 | 0.0 | 0.05 | 13.57 | 0.01 | 2.288 | 3.37 | 0.14 | 3.4 | 96.6 | 0.0 | -4.24 | 0.78 | 0.74 | 1.49 | 3.5 | 0.005 | 0.76 | 0.0 | 0.05 | 16.33 | 0.00 | 2.055 | 14.40 | 0.57 | 6.9 | 93.1 | 0.0 | -1.66 | 0.73 | 0.80 | 0.79 | 1.58 | 25082 | 3206 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KFT | 22855 | 2023-02-20 | 2020-10-14 | 3.4 | 3.68 | — | 3.6 | 0.005 | 0.83 | 0.0 | 0.05 | 14.40 | 0.01 | 2.237 | 5.46 | 0.00 | 4.8 | 95.2 | 0.0 | -0.99 | 0.69 | 0.79 | 2.73 | 3.6 | 0.004 | 0.60 | 0.0 | 0.04 | 16.08 | 0.00 | 2.148 | 7.42 | 0.24 | 4.8 | 95.2 | 0.0 | 0.49 | 0.40 | 0.69 | 0.80 | 2.11 | 11680 | 1427 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oJi | 12952 | 2023-02-19 | 2021-05-16 | 3.4 | 3.75 | 3.40 | 3.6 | 0.012 | 1.08 | 0.0 | 0.08 | 11.46 | 0.00 | 2.231 | 4.30 | 0.41 | 4.8 | 95.0 | 0.2 | -0.15 | 0.69 | 0.83 | 3.28 | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 14.74 | 0.00 | 2.214 | 5.59 | 0.61 | 4.2 | 95.8 | 0.0 | 0.57 | 0.69 | 0.72 | 0.87 | 2.73 | 9195 | 1144 | 4 | 0 | 9 | 0 | 0 | logfile |
✔ | 6VRH | 21368 | 2023-02-17 | 2020-02-07 | 3.3 | 3.68 | 3.56 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 12.92 | 0.00 | 2.212 | 9.91 | 0.00 | 5.1 | 94.9 | 0.0 | -3.01 | 0.45 | 0.70 | 2.12 | 3.6 | 0.003 | 0.57 | 0.0 | 0.04 | 14.97 | 0.00 | 2.144 | 9.26 | 0.15 | 5.7 | 94.3 | 0.0 | -0.69 | 0.59 | 0.50 | 0.74 | 1.56 | 6142 | 764 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 7K0C | 22591 | 2023-02-24 | 2020-09-04 | 3.3 | 3.68 | — | 3.5 | 0.008 | 1.01 | 0.0 | 0.06 | 13.53 | 0.01 | 1.940 | 33.54 | 0.12 | 15.1 | 84.9 | 0.0 | -3.35 | 0.69 | 0.74 | 1.17 | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 15.96 | 0.01 | 2.044 | 20.57 | 0.66 | 10.4 | 89.6 | 0.0 | -2.22 | 0.61 | 0.70 | 0.76 | 0.88 | 22540 | 2898 | 13 | 0 | 2 | 0 | 0 | logfile |
✔ | 8D0B | 27104 | 2023-02-27 | 2022-05-26 | 3.43 | 4.09 | 3.52 | 2.2 | 0.002 | 0.48 | 0.0 | 0.04 | 15.42 | 0.00 | 2.167 | 5.41 | 0.06 | 3.1 | 96.9 | 0.0 | 1.19 | 0.87 | 0.83 | 1.67 | 2.2 | 0.006 | 0.58 | 0.0 | 0.04 | 15.99 | 0.00 | 2.165 | 6.56 | 0.09 | 4.9 | 95.1 | 0.0 | 1.08 | 0.20 | 0.88 | 0.84 | 1.81 | 29367 | 3630 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 7CAB | 30325 | 2023-02-25 | 2020-06-08 | 3.52 | 3.75 | — | 3.7 | 0.011 | 0.86 | 0.0 | 0.06 | 9.54 | 0.00 | 1.105 | 13.85 | 0.82 | 4.5 | 95.5 | 0.0 | -3.16 | 0.77 | 0.78 | 3.43 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 13.09 | 0.00 | 2.178 | 8.56 | 0.22 | 3.5 | 96.5 | 0.0 | -0.23 | 1.22 | 0.78 | 0.82 | 3.00 | 24978 | 3087 | 21 | 0 | 60 | 0 | 0 | logfile |