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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7K08 | 22589 | 2023-08-26 | 2020-09-03 | 4.7 | 4.26 | — | 4.2 | 0.025 | 2.31 | 9.0 | 0.11 | 11.10 | 0.02 | 2.175 | 6.16 | 0.00 | 5.0 | 94.8 | 0.2 | -0.14 | 0.70 | 0.60 | — | 4.2 | 0.003 | 0.72 | 0.0 | 0.04 | 14.49 | 0.01 | 1.964 | 15.43 | 0.00 | 12.3 | 87.7 | 0.0 | -2.19 | 1.59 | 0.73 | 0.68 | — | 48735 | 2988 | 9 | 0 | 0 | 0 | 24606 | logfile |
✔ | 7WDF | 32437 | 2023-08-21 | 2021-12-21 | 3.9 | 4.20 | — | 4.0 | 0.002 | 0.51 | 0.0 | 0.04 | 7.63 | 0.00 | 2.170 | 7.49 | 0.00 | 4.3 | 95.6 | 0.1 | -1.73 | 0.54 | 0.40 | 0.73 | 4.0 | 0.005 | 0.84 | 0.0 | 0.05 | 14.26 | 0.01 | 2.096 | 22.48 | 0.45 | 5.3 | 94.7 | 0.0 | -1.16 | 1.62 | 0.76 | 0.72 | 0.46 | 31998 | 4101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Z3U | 6882 | 2023-08-14 | 2018-01-08 | 4.31 | 4.01 | — | 3.9 | 0.011 | 0.98 | 0.0 | 0.05 | 24.03 | 0.01 | 2.030 | 18.98 | 0.09 | 9.0 | 91.0 | 0.0 | -5.01 | 0.77 | 0.81 | — | 3.9 | 0.004 | 0.64 | 0.0 | 0.04 | 24.58 | 0.00 | 2.048 | 11.49 | 0.00 | 5.1 | 94.9 | 0.0 | 0.12 | 0.79 | 0.75 | 0.77 | — | 16766 | 1341 | 12 | 292 | 3 | 0 | 0 | logfile |
✔ | 7W4D | 32301 | 2023-08-15 | 2021-11-27 | 3.0 | 3.05 | — | 3.0 | 0.008 | 0.84 | 0.0 | 0.04 | 18.72 | 0.01 | 2.145 | 8.36 | 1.89 | 3.8 | 96.1 | 0.1 | 0.77 | 0.78 | 0.88 | 3.09 | 3.0 | 0.003 | 0.56 | 0.0 | 0.04 | 17.89 | 0.00 | 2.145 | 7.39 | 2.57 | 3.8 | 96.2 | 0.0 | 1.12 | 0.33 | 0.78 | 0.88 | 3.00 | 68181 | 8270 | 69 | 0 | 45 | 0 | 0 | logfile |
✔ | 7S15 | 24794 | 2023-08-09 | 2021-09-01 | 3.8 | 4.41 | — | 4.2 | 0.007 | 0.90 | 0.0 | 0.05 | 17.81 | 0.01 | 2.174 | 12.66 | 0.00 | 12.0 | 88.0 | 0.0 | -4.51 | 0.51 | 0.77 | 1.80 | 4.2 | 0.003 | 0.72 | 0.0 | 0.04 | 18.81 | 0.00 | 2.276 | 12.66 | 0.58 | 7.4 | 92.6 | 0.0 | -1.02 | 0.67 | 0.49 | 0.76 | 0.81 | 3207 | 382 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6VYL | 21463 | 2023-08-13 | 2020-02-27 | 3.4 | 3.43 | — | 3.4 | 0.008 | 0.85 | 0.0 | 0.05 | 14.42 | 0.01 | 2.293 | 4.68 | 0.48 | 5.1 | 94.9 | 0.0 | -4.60 | 0.72 | 0.84 | 2.99 | 3.4 | 0.002 | 0.52 | 0.0 | 0.04 | 15.80 | 0.00 | 2.156 | 8.64 | 0.21 | 3.4 | 96.6 | 0.0 | -0.15 | 0.53 | 0.67 | 0.83 | 2.63 | 13671 | 1792 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WK4 | 32558 | 2023-08-20 | 2022-01-08 | 3.69 | 3.97 | — | 3.8 | 0.005 | 0.86 | 2.0 | 0.06 | 14.66 | 0.01 | 2.338 | 3.94 | 0.49 | 3.4 | 96.4 | 0.2 | -4.28 | 0.68 | 0.60 | 0.56 | 3.8 | 0.004 | 0.75 | 0.0 | 0.05 | 16.35 | 0.00 | 2.046 | 16.91 | 0.46 | 4.9 | 95.1 | 0.0 | -1.46 | 0.89 | 0.71 | 0.68 | 0.73 | 29541 | 3743 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TDo | 25837 | 2023-08-15 | 2022-01-02 | 3.15 | 4.00 | — | 3.7 | 0.004 | 0.57 | 0.0 | 0.04 | 14.51 | 0.00 | 2.284 | 4.72 | 0.00 | 4.1 | 95.9 | 0.0 | -1.16 | 0.73 | 0.68 | 1.65 | 3.7 | 0.002 | 0.60 | 0.0 | 0.04 | 14.65 | 0.00 | 2.256 | 4.79 | 0.00 | 3.6 | 96.4 | 0.0 | 1.25 | 0.61 | 0.85 | 0.84 | 1.82 | 19572 | 2520 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6RAZ | 4788 | 2023-08-24 | 2019-04-08 | 4.46 | 4.58 | 4.41 | 4.5 | 0.011 | 1.60 | 29.0 | 0.14 | 18.54 | 0.01 | 1.308 | 23.33 | 6.20 | 17.7 | 81.4 | 1.0 | -5.70 | 0.65 | 0.65 | — | 4.5 | 0.004 | 0.87 | 0.0 | 0.05 | 15.47 | 0.01 | 2.098 | 21.18 | 0.15 | 13.2 | 86.7 | 0.0 | -3.30 | 3.61 | 0.66 | 0.65 | — | 38294 | 4764 | 18 | 23 | 6 | 0 | 0 | logfile |
✔ | 6WLV | 21843 | 2023-08-09 | 2020-04-20 | 3.45 | 3.67 | — | 3.6 | 0.004 | 0.56 | 0.0 | 0.04 | 13.21 | 0.00 | 2.211 | 9.21 | 0.00 | 4.7 | 95.3 | 0.0 | -0.61 | 0.80 | 0.82 | 2.72 | 3.6 | 0.003 | 0.63 | 0.0 | 0.04 | 15.52 | 0.00 | 2.134 | 7.99 | 0.47 | 3.5 | 96.5 | 0.0 | 2.45 | 1.27 | 0.79 | 0.83 | 2.27 | 4111 | 512 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 6T9L | 10415 | 2023-08-15 | 2019-10-28 | 3.6 | 3.74 | 3.53 | 3.6 | 0.002 | 0.47 | 0.0 | 0.03 | 22.54 | 0.00 | 2.136 | 7.11 | 0.07 | 1.1 | 98.9 | 0.0 | -1.63 | 0.74 | 0.68 | 0.82 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 24.88 | 0.00 | 2.026 | 8.92 | 0.30 | 2.4 | 97.6 | 0.0 | 1.15 | 0.81 | 0.84 | 0.83 | 1.11 | 18157 | 1532 | 18 | 290 | 8 | 0 | 0 | logfile |
✔ | 7W1V | 32257 | 2023-08-15 | 2021-11-20 | 3.0 | 3.04 | — | 3.0 | 0.008 | 0.81 | 1.0 | 0.04 | 18.73 | 0.01 | 2.140 | 8.28 | 1.69 | 3.1 | 96.9 | 0.0 | 1.09 | 0.78 | 0.87 | 3.16 | 3.0 | 0.003 | 0.55 | 0.0 | 0.04 | 17.92 | 0.00 | 2.143 | 7.74 | 2.51 | 3.4 | 96.5 | 0.0 | 1.09 | 0.29 | 0.78 | 0.87 | 3.11 | 68209 | 8270 | 67 | 0 | 46 | 0 | 0 | logfile |
✔ | 7UDB | 26455 | 2023-08-12 | 2022-03-18 | 3.5 | 3.64 | 3.39 | 3.6 | 0.003 | 0.50 | 0.0 | 0.04 | 15.55 | 0.00 | 2.182 | 6.46 | 0.14 | 2.8 | 97.2 | 0.0 | 1.74 | 0.77 | 0.82 | 1.51 | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 16.61 | 0.00 | 2.224 | 7.31 | 0.00 | 2.7 | 97.3 | 0.0 | 2.23 | 1.14 | 0.77 | 0.83 | 1.67 | 6472 | 807 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KFU | 22856 | 2023-08-17 | 2020-10-14 | 3.9 | 3.92 | — | 3.8 | 0.006 | 0.83 | 0.0 | 0.05 | 14.44 | 0.01 | 1.548 | 6.32 | 0.00 | 4.9 | 95.1 | 0.0 | -1.04 | 0.73 | 0.72 | 1.56 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 16.72 | 0.00 | 2.093 | 9.99 | 0.25 | 4.1 | 95.9 | 0.0 | 0.62 | 2.55 | 0.76 | 0.74 | 1.30 | 21848 | 2674 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EZ8 | 3984 | 2023-08-16 | 2017-11-14 | 4.0 | 4.07 | — | 4.1 | 0.007 | 1.29 | 0.0 | 0.06 | 11.10 | 0.01 | 2.277 | 4.82 | 0.83 | 6.1 | 93.6 | 0.3 | -5.17 | 0.61 | 0.77 | — | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 16.08 | 0.00 | 2.154 | 8.27 | 0.57 | 4.8 | 95.2 | 0.0 | -1.93 | 1.62 | 0.62 | 0.81 | — | 20491 | 2621 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HCY | 0199 | 2023-08-12 | 2018-08-17 | 3.1 | 3.48 | 3.04 | 3.4 | 0.015 | 1.26 | 0.0 | 0.06 | 13.94 | 0.01 | 2.017 | 2.66 | 0.79 | 6.2 | 93.8 | 0.0 | -6.30 | 0.67 | 0.89 | 5.10 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 14.75 | 0.00 | 2.142 | 6.41 | 0.26 | 4.5 | 95.5 | 0.0 | 0.32 | 1.75 | 0.71 | 0.91 | 3.40 | 11007 | 1308 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 7RU9 | 24700 | 2023-08-12 | 2021-08-16 | 3.3 | 2.93 | 3.26 | 3.2 | 0.003 | 0.59 | 0.0 | 0.07 | 14.36 | 0.01 | 1.899 | 7.92 | 0.00 | 2.9 | 97.1 | 0.0 | 1.87 | 0.65 | 0.78 | 2.93 | 3.2 | 0.005 | 0.62 | 0.0 | 0.04 | 16.08 | 0.01 | 1.889 | 9.00 | 0.16 | 3.4 | 96.6 | 0.0 | 1.26 | 0.60 | 0.74 | 0.86 | 2.93 | 11595 | 1448 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6M54 | 30084 | 2023-08-22 | 2020-03-09 | 2.4 | 2.57 | — | 2.5 | 0.012 | 1.15 | 0.0 | 0.07 | 14.96 | 0.01 | 2.591 | 0.71 | 0.00 | 4.1 | 95.9 | 0.0 | -0.37 | 0.69 | 0.85 | 5.34 | 2.5 | 0.005 | 0.68 | 0.0 | 0.05 | 16.60 | 0.00 | 2.395 | 0.48 | 0.90 | 4.0 | 96.0 | 0.0 | 3.36 | 0.28 | 0.81 | 0.91 | 3.74 | 33382 | 4104 | 38 | 0 | 6 | 8 | 0 | logfile |
✔ | 7UDC | 26456 | 2023-08-12 | 2022-03-18 | 3.7 | 3.83 | 3.54 | 3.8 | 0.003 | 0.54 | 0.0 | 0.04 | 14.90 | 0.00 | 2.200 | 7.86 | 0.28 | 3.3 | 96.7 | 0.0 | 1.79 | 0.71 | 0.80 | 1.93 | 3.8 | 0.003 | 0.54 | 0.0 | 0.04 | 16.83 | 0.00 | 2.095 | 7.08 | 0.42 | 2.9 | 97.1 | 0.0 | 2.31 | 0.37 | 0.76 | 0.83 | 1.62 | 6425 | 806 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WVR | 21924 | 2023-08-19 | 2020-05-06 | 2.9 | 3.03 | 2.92 | 3.0 | 0.013 | 1.97 | 4.0 | 0.10 | 16.17 | 0.02 | 1.964 | 0.78 | 0.20 | 1.7 | 98.3 | 0.0 | -2.06 | 0.75 | 0.78 | 3.84 | 3.0 | 0.004 | 0.63 | 0.0 | 0.04 | 17.16 | 0.00 | 1.793 | 7.25 | 1.57 | 2.8 | 97.2 | 0.0 | 0.10 | 1.61 | 0.74 | 0.84 | 3.56 | 26744 | 1712 | 8 | 2 | 6 | 0 | 13046 | logfile |