Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BC5	12139	2022-11-29	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.002	0.69	0.0	0.04	16.82	0.00	2.275	14.00	0.76	6.9	93.1	0.0	-2.62	1.28	0.23	0.57	0.92	1200	161	1	0	0	0	0	logfile
✔	6M7D	30129	2022-11-29	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	13.84	0.00	2.157	15.64	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.003	0.53	0.0	0.04	15.81	0.00	2.240	9.20	2.62	1.2	98.8	0.0	1.93	0.83	0.35	0.87	2.88	3280	412	2	6	0	0	0	logfile
✔	7MKM	23899	2022-11-29	2021-04-24	3.16	2.47	—	2.2	0.003	0.79	0.0	0.05	13.76	0.01	2.304	8.49	0.00	2.2	97.8	0.0	-0.82	0.52	0.59	1.64	2.2	0.004	0.82	0.0	0.05	15.73	0.01	2.190	12.82	0.29	7.5	92.5	0.0	-1.99	0.63	0.54	0.63	1.36	3192	406	3	0	1	0	0	logfile
✔	7LTo	23517	2022-11-29	2021-02-19	3.2	3.37	—	3.3	0.003	0.71	0.0	0.05	15.41	0.00	2.232	11.24	3.25	9.1	90.9	0.0	-4.26	0.71	0.77	2.73	3.3	0.003	0.72	0.0	0.04	16.89	0.00	2.090	8.35	1.42	7.5	92.5	0.0	-0.66	1.17	0.72	0.79	2.36	4754	605	2	0	0	0	0	logfile
✔	7JZU	22574	2022-11-29	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.78	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.003	0.59	0.0	0.04	14.23	0.00	2.252	5.19	0.00	3.3	96.7	0.0	0.46	1.61	0.69	0.80	4.31	1987	248	3	0	3	0	0	logfile
✔	7JZM	22533	2022-11-29	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.37	0.0	0.08	9.25	0.01	2.420	1.01	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.003	0.69	0.0	0.04	14.47	0.00	2.187	8.88	0.00	2.8	97.2	0.0	0.24	1.24	0.76	0.79	3.02	2033	258	3	0	3	0	0	logfile
✔	7E23	30950	2022-11-29	2021-02-04	3.3	3.62	—	3.6	0.004	0.82	0.0	0.05	14.42	0.01	2.123	14.37	0.00	17.3	82.7	0.0	-3.70	0.70	0.77	2.78	3.6	0.003	0.75	0.0	0.05	16.18	0.01	2.170	13.23	0.30	15.8	84.2	0.0	-3.06	1.15	0.72	0.80	1.81	3133	403	4	0	1	0	0	logfile
✔	7BC6	12140	2022-11-29	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.76	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.003	0.63	0.0	0.04	15.29	0.00	2.201	7.85	0.23	4.2	95.8	0.0	0.39	0.28	0.55	0.82	2.09	4178	549	2	0	0	0	0	logfile
✔	7MSX	23971	2022-11-29	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.95	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.49	0.0	0.04	15.13	0.00	2.210	5.43	0.49	2.1	97.9	0.0	1.21	1.12	0.79	0.87	3.16	3706	473	1	0	3	0	0	logfile
✔	7MJi	23874	2022-11-29	2021-04-20	2.81	3.32	—	3.2	0.006	0.80	0.0	0.05	12.43	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.004	0.58	0.0	0.04	15.25	0.00	2.300	7.73	1.10	2.8	97.2	0.0	-0.01	1.44	0.56	0.85	4.21	2522	320	3	0	1	0	0	logfile
✔	7LXX	23578	2022-11-29	2021-03-05	3.0	2.96	3.03	3.2	0.012	1.18	0.0	0.06	10.07	0.01	2.519	0.76	0.00	3.6	96.4	0.0	0.69	0.75	0.78	4.22	3.1	0.004	0.68	0.0	0.05	14.60	0.00	2.128	10.01	4.21	3.6	96.4	0.0	-0.44	1.60	0.75	0.82	4.59	2740	352	5	0	4	0	0	logfile
✔	7LY0	23581	2022-11-29	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.17	0.0	0.08	9.71	0.01	2.515	1.10	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.004	0.62	0.0	0.04	15.36	0.00	2.150	9.39	2.14	2.1	97.9	0.0	0.60	1.63	0.70	0.77	4.31	2805	354	5	0	6	0	0	logfile
✔	7LXW	23577	2022-11-29	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.61	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.003	0.60	0.0	0.05	15.32	0.00	2.264	9.35	1.90	1.7	98.3	0.0	0.52	0.70	0.71	0.82	5.23	2524	317	5	0	5	0	0	logfile
✔	6WKT	21708	2022-11-29	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.65	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.59	0.0	0.03	15.90	0.00	2.202	11.45	0.00	4.8	95.2	0.0	3.63	1.34	0.65	0.75	3.76	3152	424	4	0	0	0	0	logfile
✔	7DA4	30622	2022-11-29	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.95	0.0	0.04	11.56	0.00	2.266	19.19	0.00	18.3	81.7	0.0	-5.96	3.11	0.36	0.58	—	507	66	3	0	0	0	0	logfile
✔	7JLX	22383	2022-11-29	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7C1D	30269	2022-11-29	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.90	0.00	2.239	18.63	0.52	24.5	75.5	0.0	-4.57	2.82	0.39	0.75	2.42	2034	306	6	0	0	0	0	logfile
✔	7LX5	23566	2022-11-29	2021-03-03	3.44	3.85	3.41	3.9	0.005	0.62	0.0	0.04	10.10	0.00	2.198	4.72	0.00	3.4	96.6	0.0	-0.46	0.71	0.81	3.26	3.9	0.003	0.72	0.0	0.04	15.79	0.00	2.166	9.43	1.08	2.9	97.1	0.0	-0.16	1.43	0.70	0.81	3.36	3485	448	3	0	0	0	0	logfile
✔	7BC7	12141	2022-11-29	2020-12-18	3.3	3.46	3.24	3.4	0.009	0.98	0.0	0.05	14.71	0.01	2.110	12.54	0.23	9.4	90.5	0.2	-1.48	0.58	0.84	2.41	3.4	0.003	0.68	0.0	0.04	16.13	0.00	2.199	10.06	0.69	4.6	95.4	0.0	0.08	0.36	0.58	0.85	2.30	4209	549	3	0	1	0	0	logfile
✔	7B6E	12053	2022-11-29	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.28	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	4.9	0.003	0.98	0.0	0.05	14.71	0.00	2.119	24.18	0.00	10.9	89.1	0.0	-1.33	0.86	0.61	0.66	—	2205	269	1	0	0	0	0	logfile

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