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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7K8C | 22726 | 2022-04-05 | 2020-09-26 | 4.27 | 4.22 | — | 4.2 | 0.004 | 0.84 | 2.0 | 0.05 | 13.70 | 0.01 | 2.196 | 12.83 | 0.85 | 3.2 | 96.8 | 0.0 | 0.14 | 0.47 | 0.56 | — | 4.2 | 0.003 | 0.80 | 0.0 | 0.04 | 13.55 | 0.01 | 2.215 | 13.63 | 0.17 | 3.6 | 96.4 | 0.0 | 0.67 | 0.60 | 0.50 | 0.61 | — | 5524 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K8B | 22725 | 2022-04-04 | 2020-09-26 | 2.94 | 2.86 | — | 3.1 | 0.005 | 0.83 | 2.0 | 0.05 | 14.13 | 0.01 | 2.214 | 14.30 | 0.68 | 5.5 | 94.5 | 0.0 | -0.97 | 0.41 | 0.61 | 1.17 | 3.1 | 0.003 | 0.79 | 0.0 | 0.04 | 16.91 | 0.01 | 2.147 | 15.10 | 2.36 | 5.4 | 94.6 | 0.0 | -0.14 | 1.19 | 0.42 | 0.63 | 0.64 | 5543 | 726 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VH1 | 31983 | 2022-04-05 | 2021-09-20 | 4.2 | 4.15 | — | 4.0 | 0.009 | 1.32 | 0.0 | 0.07 | 12.24 | 0.01 | 2.222 | 5.93 | 0.74 | 11.9 | 87.8 | 0.2 | -5.32 | 0.79 | 0.75 | — | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 12.70 | 0.00 | 2.140 | 10.71 | 0.00 | 8.8 | 91.2 | 0.0 | -1.93 | 3.32 | 0.79 | 0.75 | — | 13156 | 1661 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 7JZY | 22584 | 2022-04-07 | 2020-09-02 | 3.6 | 3.61 | — | 3.6 | 0.009 | 0.96 | 0.0 | 0.05 | 16.34 | 0.01 | 2.236 | 5.56 | 0.85 | 7.0 | 93.0 | 0.0 | -3.78 | 0.81 | 0.85 | 2.54 | 3.5 | 0.006 | 0.89 | 1.0 | 0.04 | 17.32 | 0.00 | 1.653 | 12.31 | 0.09 | 5.9 | 94.1 | 0.0 | -0.96 | 0.49 | 0.81 | 0.84 | 2.12 | 24539 | 3024 | 12 | 61 | 0 | 0 | 0 | logfile |
✔ | 7PEB | 13351 | 2022-04-07 | 2021-08-09 | 3.67 | 4.11 | — | 3.9 | 0.002 | 0.52 | 0.0 | 0.04 | 13.94 | 0.00 | 2.245 | 4.50 | 2.69 | 5.1 | 94.9 | 0.1 | -2.66 | 0.71 | 0.73 | 1.45 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 15.49 | 0.00 | 2.078 | 11.11 | 0.41 | 3.6 | 96.4 | 0.0 | 0.89 | 2.13 | 0.72 | 0.75 | 1.13 | 29140 | 3611 | 5 | 0 | 57 | 0 | 0 | logfile |
✔ | 7E3L | 30983 | 2022-04-08 | 2021-02-09 | 3.6 | 4.10 | — | 3.6 | 0.006 | 0.87 | 4.0 | 0.05 | 13.31 | 0.01 | 2.193 | 9.04 | 0.32 | 8.9 | 91.0 | 0.1 | -2.95 | 0.68 | 0.53 | 2.26 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 14.71 | 0.00 | 2.012 | 9.54 | 0.06 | 4.4 | 95.6 | 0.0 | -0.32 | 0.76 | 0.85 | 0.86 | 2.09 | 32639 | 4266 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 7PE8 | 13348 | 2022-04-07 | 2021-08-09 | 3.2 | 3.51 | — | 3.4 | 0.002 | 0.41 | 0.0 | 0.04 | 8.71 | 0.00 | 2.255 | 4.45 | 1.65 | 3.2 | 96.8 | 0.0 | -0.20 | 0.79 | 0.81 | 2.75 | 3.4 | 0.002 | 0.52 | 0.0 | 0.04 | 12.70 | 0.00 | 2.206 | 7.04 | 0.17 | 3.6 | 96.4 | 0.0 | 0.72 | 0.49 | 0.80 | 0.83 | 1.84 | 29291 | 3832 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 7FD8 | 31536 | 2022-04-05 | 2021-07-16 | 3.8 | 3.98 | 3.73 | 3.6 | 0.008 | 1.41 | 2.0 | 0.11 | 11.94 | 0.00 | 2.327 | 5.06 | 0.61 | 8.6 | 91.3 | 0.1 | -2.25 | 0.73 | 0.82 | 2.28 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 13.67 | 0.00 | 2.145 | 12.10 | 0.15 | 4.9 | 95.1 | 0.0 | 0.08 | 0.61 | 0.73 | 0.84 | 2.07 | 12152 | 1528 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7K8D | 22728 | 2022-04-05 | 2020-09-26 | 4.33 | 4.48 | — | 4.7 | 0.004 | 1.12 | 0.0 | 0.06 | 12.53 | 0.01 | 2.205 | 23.61 | 1.86 | 4.3 | 95.7 | 0.0 | -2.98 | 0.33 | 0.40 | — | 4.7 | 0.003 | 0.83 | 0.0 | 0.04 | 13.33 | 0.01 | 2.120 | 13.72 | 0.00 | 4.3 | 95.7 | 0.0 | 0.70 | 1.45 | 0.41 | 0.49 | — | 5529 | 725 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oiD | 12926 | 2022-04-09 | 2021-05-11 | 3.7 | 3.36 | — | 3.3 | 0.013 | 1.33 | 2.0 | 0.07 | 17.19 | 0.01 | 1.521 | 9.44 | 0.07 | 6.8 | 93.2 | 0.0 | -2.22 | 0.73 | 0.74 | 2.43 | 3.3 | 0.010 | 0.91 | 1.0 | 0.05 | 17.54 | 0.01 | 1.520 | 17.23 | 0.28 | 5.2 | 94.8 | 0.0 | -0.83 | 1.17 | 0.72 | 0.73 | 1.71 | 101125 | 8217 | 61 | 1601 | 5 | 0 | 0 | logfile |
✔ | 6YT5 | 10912 | 2022-04-09 | 2020-04-23 | 3.0 | 2.67 | — | 3.3 | 0.010 | 0.73 | 0.0 | 0.05 | 15.51 | 0.00 | 2.196 | 13.76 | 0.15 | 8.0 | 92.0 | 0.0 | -4.28 | 0.85 | 0.81 | 2.08 | 3.3 | 0.004 | 0.76 | 0.0 | 0.04 | 17.73 | 0.01 | 2.144 | 11.76 | 1.90 | 3.6 | 96.4 | 0.0 | 0.71 | 0.54 | 0.83 | 0.81 | 1.27 | 39078 | 5040 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EY4 | 31377 | 2022-04-04 | 2021-05-29 | 3.69 | 3.90 | — | 3.9 | 0.007 | 0.89 | 0.0 | 0.05 | 14.08 | 0.01 | 2.150 | 10.63 | 0.20 | 13.5 | 86.1 | 0.4 | -2.54 | 0.63 | 0.78 | 3.57 | 3.9 | 0.004 | 0.83 | 0.0 | 0.05 | 16.37 | 0.01 | 2.169 | 10.52 | 1.20 | 10.3 | 89.7 | 0.0 | -1.69 | 1.30 | 0.65 | 0.81 | 3.22 | 4683 | 585 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7EY5 | 31378 | 2022-04-04 | 2021-05-29 | 3.4 | 3.68 | — | 3.5 | 0.005 | 0.81 | 0.0 | 0.05 | 13.84 | 0.01 | 2.161 | 11.66 | 0.00 | 12.9 | 87.1 | 0.0 | -3.63 | 0.68 | 0.82 | 2.63 | 3.5 | 0.004 | 0.79 | 0.0 | 0.05 | 15.39 | 0.01 | 2.085 | 11.46 | 0.36 | 10.0 | 90.0 | 0.0 | -2.46 | 0.42 | 0.68 | 0.84 | 1.98 | 5072 | 648 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PEA | 13350 | 2022-04-04 | 2021-08-09 | 4.07 | 4.50 | — | 4.2 | 0.002 | 0.47 | 0.0 | 0.04 | 14.27 | 0.00 | 2.239 | 3.97 | 4.24 | 4.7 | 95.3 | 0.0 | -2.53 | 0.84 | 0.72 | — | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 13.42 | 0.00 | 2.142 | 11.58 | 0.00 | 3.4 | 96.6 | 0.0 | 0.63 | 1.51 | 0.86 | 0.77 | — | 58252 | 7222 | 10 | 0 | 114 | 0 | 0 | logfile |
✔ | 7EY0 | 31374 | 2022-04-04 | 2021-05-29 | 3.2 | 3.42 | — | 3.4 | 0.007 | 1.01 | 5.0 | 0.06 | 14.51 | 0.01 | 2.105 | 17.83 | 3.08 | 12.2 | 87.3 | 0.4 | -2.42 | 0.55 | 0.73 | 3.30 | 3.4 | 0.004 | 0.76 | 0.0 | 0.04 | 15.78 | 0.01 | 2.126 | 14.49 | 0.46 | 6.8 | 93.2 | 0.0 | -1.42 | 1.71 | 0.58 | 0.78 | 2.82 | 5963 | 755 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MC0 | 23752 | 2022-04-04 | 2021-04-01 | 3.3 | 3.73 | — | 3.7 | 0.012 | 1.62 | 8.0 | 0.10 | 12.73 | 0.01 | 1.925 | 7.84 | 1.19 | 3.9 | 95.8 | 0.3 | -0.86 | 0.65 | 0.81 | 2.48 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 14.66 | 0.00 | 2.209 | 5.84 | 0.13 | 3.9 | 96.1 | 0.0 | 0.90 | 1.05 | 0.65 | 0.82 | 2.10 | 7092 | 931 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E3K | 30982 | 2022-04-08 | 2021-02-09 | 3.9 | 4.65 | — | 3.7 | 0.008 | 0.94 | 1.0 | 0.07 | 12.93 | 0.01 | 2.011 | 12.94 | 0.12 | 7.9 | 92.0 | 0.1 | -1.92 | 0.71 | 0.59 | 1.92 | 3.7 | 0.011 | 0.99 | 1.0 | 0.04 | 14.31 | 0.01 | 1.727 | 13.48 | 0.15 | 5.4 | 94.6 | 0.0 | -0.61 | 2.57 | 0.86 | 0.86 | 1.79 | 32539 | 4278 | 12 | 0 | 22 | 0 | 0 | logfile |
✔ | 7oiZ | 12936 | 2022-04-09 | 2021-05-13 | 2.9 | 3.30 | — | 3.3 | 0.007 | 0.85 | 1.0 | 0.05 | 14.09 | 0.02 | 1.986 | 3.75 | 0.07 | 3.5 | 96.4 | 0.1 | -0.63 | 0.83 | 0.86 | 2.92 | 3.3 | 0.004 | 0.66 | 0.0 | 0.04 | 14.47 | 0.01 | 1.848 | 7.72 | 1.94 | 3.7 | 96.3 | 0.0 | 0.31 | 0.36 | 0.79 | 0.86 | 2.43 | 140295 | 5604 | 64 | 4472 | 311 | 0 | 0 | logfile |
✔ | 7PE9 | 13349 | 2022-04-08 | 2021-08-09 | 3.7 | 4.12 | — | 3.9 | 0.003 | 0.55 | 0.0 | 0.04 | 14.29 | 0.00 | 2.250 | 6.21 | 1.33 | 3.7 | 96.3 | 0.0 | -0.63 | 0.81 | 0.81 | 1.47 | 3.9 | 0.007 | 0.80 | 1.0 | 0.04 | 15.68 | 0.00 | 2.166 | 9.35 | 0.10 | 3.7 | 96.3 | 0.0 | 0.73 | 1.72 | 0.82 | 0.83 | 1.04 | 31076 | 4043 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 7EG0 | 31103 | 2022-04-05 | 2021-03-23 | 3.4 | 3.09 | — | 3.3 | 0.015 | 1.13 | 0.0 | 0.05 | 14.94 | 0.00 | 1.975 | 20.60 | 0.12 | 13.9 | 86.0 | 0.1 | -2.98 | 0.74 | 0.79 | 2.89 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 16.59 | 0.00 | 1.988 | 8.14 | 0.30 | 9.3 | 90.7 | 0.0 | -0.20 | 2.08 | 0.77 | 0.82 | 2.70 | 15246 | 1878 | 8 | 0 | 8 | 0 | 0 | logfile |