Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KA3	22757	2021-08-08	2020-09-29	3.3	3.20	—	3.4	0.004	0.78	0.0	0.04	13.66	0.01	2.294	3.99	0.36	2.9	97.1	0.0	-2.21	0.76	0.82	1.82	3.3	0.003	0.54	0.0	0.04	15.62	0.00	2.232	7.12	0.09	3.6	96.4	0.0	2.03	0.50	0.77	0.83	0.99	10472	1372	4	0	0	0	0	logfile
✔	7KA2	22756	2021-08-08	2020-09-29	3.6	3.77	—	3.6	0.008	0.98	0.0	0.05	15.20	0.01	2.254	6.36	6.12	3.8	96.2	0.0	-1.99	0.87	0.83	1.20	3.6	0.003	0.72	0.0	0.04	15.82	0.00	2.100	12.39	0.27	2.4	97.6	0.0	1.43	1.27	0.87	0.83	0.66	10472	1372	4	0	0	0	0	logfile
✔	7KVE	23048	2021-08-08	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	16.95	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.004	0.73	0.0	0.05	16.64	0.01	2.154	13.58	0.41	14.7	85.3	0.0	-4.08	1.22	0.75	0.74	2.29	11142	1374	1	0	0	0	0	logfile
✔	7KA4	22758	2021-08-08	2020-09-29	2.8	2.81	—	2.8	0.005	0.90	0.0	0.05	14.17	0.01	2.372	4.23	3.96	3.2	96.8	0.0	-2.20	0.77	0.82	2.71	2.9	0.003	0.57	0.0	0.04	15.90	0.00	2.159	9.73	2.61	3.4	96.6	0.0	1.64	1.43	0.78	0.83	1.49	10472	1372	4	0	0	0	0	logfile
✔	7K6Q	22692	2021-08-08	2020-09-21	3.1	3.63	3.21	3.5	0.006	0.77	0.0	0.04	25.09	0.01	2.108	3.36	0.00	2.3	97.7	0.0	1.37	0.81	0.80	3.65	3.5	0.003	0.56	0.0	0.03	26.45	0.00	2.153	9.78	0.10	2.9	97.1	0.0	1.23	0.39	0.82	0.83	2.76	15578	1229	13	292	1	0	0	logfile
✔	7KVF	23049	2021-08-08	2020-11-28	3.6	4.39	3.76	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	16.95	0.57	18.2	81.4	0.4	-5.88	0.82	0.66	1.37	3.6	0.004	0.83	0.0	0.05	16.03	0.01	2.128	22.19	0.33	14.5	85.5	0.0	-3.54	2.67	0.87	0.76	0.92	11142	1374	1	0	0	0	0	logfile
✔	7KTP	23025	2021-08-08	2020-11-24	4.8	4.79	—	4.6	0.005	0.73	0.0	0.05	11.99	0.00	2.221	2.11	0.00	4.5	95.5	0.0	-4.13	0.71	0.69	—	4.6	0.003	0.69	0.0	0.04	13.08	0.00	1.290	15.21	0.00	4.8	95.2	0.0	-0.83	2.69	0.75	0.77	—	12008	1544	5	0	7	0	0	logfile
✔	6W7W	21573	2021-08-09	2020-03-19	3.9	4.46	—	4.0	0.002	0.50	0.0	0.03	15.50	0.00	2.156	10.70	0.12	4.1	95.9	0.0	-2.82	0.91	0.83	1.20	4.0	0.008	0.85	0.0	0.04	17.43	0.01	2.009	29.28	0.94	8.6	91.4	0.0	-1.67	0.72	0.92	0.85	1.55	26883	1047	10	871	0	0	0	logfile
✔	7BR7	30158	2021-08-10	2020-03-26	4.3	3.99	—	4.0	0.006	0.94	0.0	0.06	15.20	0.01	1.573	8.87	0.70	6.8	93.2	0.0	-4.57	0.44	0.74	—	3.9	0.006	0.84	0.0	0.05	14.45	0.01	1.465	21.73	0.04	7.0	93.0	0.0	-1.95	2.73	0.45	0.75	—	73138	9263	21	0	0	0	0	logfile
✔	6WJ5	21688	2021-08-10	2020-04-11	3.6	3.81	—	3.8	0.013	1.88	4.0	0.10	13.20	0.01	2.369	0.25	0.05	3.8	95.7	0.5	-2.50	0.51	0.70	3.53	3.8	0.003	0.57	0.0	0.04	16.23	0.00	2.025	6.75	0.15	3.4	96.6	0.0	1.17	1.46	0.61	0.79	2.69	36320	2248	8	0	4	0	18268	logfile
✔	7AD9	11721	2021-08-08	2020-09-14	3.5	3.60	3.40	3.5	0.017	1.61	10.0	0.08	12.28	0.01	1.765	2.30	0.30	1.8	98.2	0.0	-0.26	0.68	0.81	2.87	3.5	0.003	0.66	5.0	0.04	15.00	0.00	2.056	9.10	0.43	2.5	97.5	0.0	1.43	1.84	0.69	0.84	2.36	15560	1960	20	0	25	0	0	logfile
✔	7D3U	30567	2021-08-08	2020-09-21	3.0	3.53	—	3.5	0.005	0.78	1.0	0.04	14.00	0.00	2.119	18.42	0.50	5.7	94.2	0.1	-3.05	0.62	0.83	2.26	3.4	0.003	0.68	0.0	0.04	15.54	0.01	2.213	10.80	2.34	5.1	94.9	0.0	0.39	0.50	0.62	0.83	1.76	14333	1873	9	0	28	0	0	logfile
✔	7DCR	30640	2021-08-07	2020-10-26	3.15	3.27	—	3.2	0.005	0.91	1.0	0.06	10.49	0.01	2.260	4.10	0.63	3.0	96.7	0.3	-4.71	0.66	0.78	3.15	3.2	0.003	0.64	0.0	0.04	14.36	0.00	2.144	7.94	0.47	3.9	96.1	0.0	0.50	0.71	0.68	0.81	2.34	5653	711	2	0	0	0	0	logfile
✔	7KTQ	23026	2021-08-08	2020-11-24	3.3	3.36	—	3.3	0.008	0.84	0.0	0.05	29.36	0.01	2.201	6.33	0.16	1.5	98.5	0.0	-2.43	0.77	0.85	3.63	3.3	0.004	0.56	0.0	0.03	29.52	0.00	2.110	6.29	0.32	2.4	97.6	0.0	2.79	3.07	0.79	0.87	2.43	12745	752	10	331	0	0	0	logfile
✔	7K9L	22754	2021-08-08	2020-09-29	4.9	4.39	—	4.7	0.007	1.20	0.0	0.07	15.28	0.01	2.254	9.26	3.96	3.5	96.5	0.0	-1.98	0.67	0.78	—	4.6	0.003	0.74	0.0	0.04	13.90	0.00	2.197	15.81	0.72	3.4	96.6	0.0	0.56	1.04	0.69	0.78	—	10472	1372	4	0	0	0	0	logfile
✔	6WMU	21853	2021-08-10	2020-04-21	3.18	3.31	—	3.3	0.016	1.01	1.0	0.06	18.72	0.01	2.066	20.86	9.93	11.7	88.0	0.3	-3.75	0.66	0.77	1.72	3.3	0.004	0.69	0.0	0.04	18.80	0.00	2.124	12.04	0.29	6.9	93.0	0.0	-0.45	0.76	0.73	0.85	1.89	34094	4121	13	86	3	0	0	logfile
✔	7K9X	22755	2021-08-08	2020-09-29	3.8	3.44	—	3.7	0.008	0.98	0.0	0.05	15.20	0.01	2.254	6.36	6.12	3.8	96.2	0.0	-1.99	0.79	0.81	0.97	3.7	0.003	0.69	0.0	0.04	15.88	0.00	2.104	12.63	0.72	2.8	97.2	0.0	1.56	1.56	0.79	0.81	0.66	10472	1372	4	0	0	0	0	logfile
✔	7KSR	23024	2021-08-08	2020-11-24	4.1	4.28	—	4.2	0.004	0.70	0.0	0.05	11.74	0.00	2.200	1.91	0.00	5.5	94.5	0.0	-4.46	0.65	0.70	—	4.2	0.003	0.64	0.0	0.04	13.11	0.00	1.556	9.96	0.00	4.1	95.9	0.0	-0.82	1.16	0.69	0.77	—	11863	1524	5	0	7	0	0	logfile
✔	6WJJ	21694	2021-08-08	2020-04-13	3.8	3.85	—	3.8	0.008	1.05	3.0	0.06	10.44	0.01	2.163	4.50	0.89	5.8	94.2	0.0	-3.43	0.74	0.81	2.71	3.8	0.005	0.69	0.0	0.05	14.33	0.00	2.046	8.55	0.30	4.7	95.3	0.0	-0.59	1.32	0.74	0.80	1.80	56908	7076	24	0	24	0	0	logfile
✔	6VRA	21365	2021-08-08	2020-02-07	3.3	3.58	—	3.4	0.008	1.03	4.0	0.06	15.67	0.01	2.214	6.31	0.80	8.5	91.5	0.0	-3.93	0.84	0.85	2.53	3.4	0.010	1.08	4.0	0.05	16.26	0.00	1.528	14.95	0.00	7.7	92.3	0.0	-1.90	0.45	0.85	0.87	2.57	57744	7208	20	0	16	0	0	logfile

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