Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QUQ	14151	2023-02-23	2022-01-18	2.6	2.44	—	2.8	0.009	0.94	0.0	0.05	12.93	0.01	2.144	15.78	0.10	4.7	95.3	0.0	-1.38	0.64	0.65	1.63	2.8	0.003	0.71	0.0	0.05	16.43	0.00	2.097	20.72	2.08	4.9	95.1	0.0	-0.87	1.61	0.67	0.70	1.59	19095	2457	12	0	6	0	0	logfile
✔	7K0J	22599	2023-02-18	2020-09-04	3.1	3.65	—	3.6	0.006	0.71	0.0	0.05	13.14	0.00	2.210	5.54	0.00	3.2	96.8	0.0	0.19	0.64	0.80	3.76	3.6	0.004	0.52	0.0	0.04	14.55	0.00	2.216	5.15	0.12	2.6	97.4	0.0	1.07	0.40	0.63	0.80	3.33	7683	977	5	0	3	0	0	logfile
✔	7CWM	30483	2023-02-27	2020-08-29	3.6	4.19	—	3.6	0.008	1.04	2.0	0.07	9.90	0.01	1.512	22.14	0.54	7.7	92.3	0.1	-3.56	0.73	0.65	1.87	3.6	0.003	0.63	0.0	0.04	12.51	0.00	2.218	11.92	0.09	5.1	94.9	0.0	-1.05	0.78	0.83	0.79	1.63	30772	3883	26	0	44	0	0	logfile
✔	6QEX	4539	2023-02-21	2019-01-08	3.6	3.83	—	3.8	0.009	1.23	0.0	0.10	15.49	0.01	1.406	8.33	0.73	6.0	93.9	0.1	-3.39	0.62	0.73	1.80	3.8	0.002	0.62	0.0	0.04	16.34	0.00	2.191	8.82	0.51	3.6	96.4	0.0	0.52	0.58	0.65	0.72	1.35	13251	1627	4	0	22	0	0	logfile
✔	7K0Q	22608	2023-02-18	2020-09-04	3.3	3.61	—	3.5	0.006	0.70	0.0	0.05	12.64	0.00	2.116	5.18	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.002	0.48	0.0	0.04	14.21	0.00	2.189	4.84	0.11	2.5	97.5	0.0	1.24	1.46	0.73	0.87	2.87	8778	1107	5	0	2	0	0	logfile
✔	8DD8	27336	2023-02-19	2022-06-17	3.4	3.50	3.43	3.4	0.003	0.60	0.0	0.04	15.62	0.00	2.211	7.30	0.00	4.0	95.9	0.1	-0.65	0.81	0.81	2.33	3.4	0.002	0.53	0.0	0.04	16.75	0.00	2.198	10.11	0.00	4.0	96.0	0.0	0.42	1.22	0.83	0.84	1.99	10492	1272	2	0	0	0	0	logfile
✔	7M30	23640	2023-02-19	2021-03-17	3.81	2.76	3.80	2.1	0.005	1.15	0.0	0.07	13.59	0.01	1.711	9.02	0.89	5.3	94.7	0.0	-0.94	0.68	0.56	1.80	2.2	0.004	1.02	0.0	0.05	17.24	0.01	2.036	26.35	1.09	6.3	93.7	0.0	-0.68	3.36	0.75	0.72	1.14	9191	1167	12	0	2	0	0	logfile
✔	8E94	27955	2023-02-22	2022-08-26	3.72	3.74	3.51	3.7	0.006	0.91	12.0	0.11	14.91	0.02	1.557	13.91	1.27	8.5	91.3	0.2	-2.58	0.68	0.81	2.05	3.7	0.003	0.65	0.0	0.05	15.38	0.00	2.170	6.87	0.35	8.4	91.6	0.0	-1.58	0.34	0.68	0.81	1.74	18816	2590	15	0	27	0	0	logfile
✔	7FDB	31539	2023-02-24	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.61	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.88	0.0	0.05	13.87	0.01	2.001	29.12	0.03	7.7	92.3	0.0	-1.80	2.25	0.77	0.68	—	64497	8295	31	0	0	0	0	logfile
✔	7VDA	31912	2023-02-24	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	7.99	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.002	0.54	0.0	0.04	18.07	0.00	2.051	8.99	2.60	2.1	97.9	0.0	1.12	0.41	0.66	0.84	4.19	23292	2976	6	0	0	0	0	logfile
✔	7RA3	24334	2023-02-19	2021-06-29	3.24	3.47	—	3.3	0.005	0.91	0.0	0.05	13.68	0.00	2.074	6.99	0.35	7.1	92.9	0.0	-1.87	0.69	0.80	2.16	3.3	0.004	0.74	0.0	0.04	15.98	0.00	2.111	14.04	0.62	5.4	94.6	0.0	-0.79	0.82	0.69	0.83	1.29	10802	1381	7	0	0	0	0	logfile
✔	6VRL	21370	2023-02-17	2020-02-07	3.8	3.98	4.22	3.9	0.002	0.56	0.0	0.04	14.02	0.00	2.159	10.57	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	3.9	0.003	0.71	0.0	0.04	16.18	0.00	2.038	17.54	0.46	6.6	93.4	0.0	-1.10	0.78	0.50	0.70	1.42	6141	764	4	0	4	0	0	logfile
✔	6R4o	4721	2023-02-19	2019-03-22	4.2	4.81	—	4.6	0.006	1.21	0.0	0.06	12.61	0.01	1.774	10.02	0.48	8.2	91.8	0.0	-4.45	0.64	0.71	—	4.6	0.003	0.72	0.0	0.04	13.28	0.00	2.001	14.04	0.10	5.8	94.2	0.0	0.01	1.02	0.64	0.72	—	9602	1182	4	0	6	0	0	logfile
✔	7W94	32360	2023-02-25	2021-12-09	3.4	3.02	—	3.6	0.003	0.67	0.0	0.05	13.57	0.01	2.288	3.37	0.14	3.4	96.6	0.0	-4.24	0.78	0.74	1.49	3.5	0.005	0.76	0.0	0.05	16.33	0.00	2.055	14.40	0.57	6.9	93.1	0.0	-1.66	0.73	0.80	0.79	1.58	25082	3206	3	0	0	0	0	logfile
✔	7KFT	22855	2023-02-20	2020-10-14	3.4	3.68	—	3.6	0.005	0.83	0.0	0.05	14.40	0.01	2.237	5.46	0.00	4.8	95.2	0.0	-0.99	0.69	0.79	2.73	3.6	0.004	0.60	0.0	0.04	16.08	0.00	2.148	7.42	0.24	4.8	95.2	0.0	0.49	0.40	0.69	0.80	2.11	11680	1427	5	0	0	0	0	logfile
✔	7oJi	12952	2023-02-19	2021-05-16	3.4	3.75	3.40	3.6	0.012	1.08	0.0	0.08	11.46	0.00	2.231	4.30	0.41	4.8	95.0	0.2	-0.15	0.69	0.83	3.28	3.6	0.002	0.56	0.0	0.04	14.74	0.00	2.214	5.59	0.61	4.2	95.8	0.0	0.57	0.69	0.72	0.87	2.73	9195	1144	4	0	9	0	0	logfile
✔	6VRH	21368	2023-02-17	2020-02-07	3.3	3.68	3.56	3.6	0.003	0.54	0.0	0.04	12.92	0.00	2.212	9.91	0.00	5.1	94.9	0.0	-3.01	0.45	0.70	2.12	3.6	0.003	0.57	0.0	0.04	14.97	0.00	2.144	9.26	0.15	5.7	94.3	0.0	-0.69	0.59	0.50	0.74	1.56	6142	764	4	0	5	0	0	logfile
✔	7K0C	22591	2023-02-24	2020-09-04	3.3	3.68	—	3.5	0.008	1.01	0.0	0.06	13.53	0.01	1.940	33.54	0.12	15.1	84.9	0.0	-3.35	0.69	0.74	1.17	3.5	0.004	0.81	0.0	0.05	15.96	0.01	2.044	20.57	0.66	10.4	89.6	0.0	-2.22	0.61	0.70	0.76	0.88	22540	2898	13	0	2	0	0	logfile
✔	8D0B	27104	2023-02-27	2022-05-26	3.43	4.09	3.52	2.2	0.002	0.48	0.0	0.04	15.42	0.00	2.167	5.41	0.06	3.1	96.9	0.0	1.19	0.87	0.83	1.67	2.2	0.006	0.58	0.0	0.04	15.99	0.00	2.165	6.56	0.09	4.9	95.1	0.0	1.08	0.20	0.88	0.84	1.81	29367	3630	8	15	0	0	0	logfile
✔	7CAB	30325	2023-02-25	2020-06-08	3.52	3.75	—	3.7	0.011	0.86	0.0	0.06	9.54	0.00	1.105	13.85	0.82	4.5	95.5	0.0	-3.16	0.77	0.78	3.43	3.7	0.003	0.62	0.0	0.04	13.09	0.00	2.178	8.56	0.22	3.5	96.5	0.0	-0.23	1.22	0.78	0.82	3.00	24978	3087	21	0	60	0	0	logfile

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