Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M62	23687	2022-04-04	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile
✔	7M65	23689	2022-04-04	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.005	0.96	0.0	0.05	12.00	0.00	2.126	25.73	0.00	17.3	82.7	0.0	-6.33	4.44	0.52	0.73	—	2025	275	10	0	5	0	0	logfile
✔	7M64	23688	2022-04-04	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.90	0.0	0.04	11.30	0.00	2.242	6.78	0.00	5.2	94.8	0.0	-4.00	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7oSL	13054	2022-04-09	2021-06-09	3.1	2.94	3.08	3.1	0.010	1.26	0.0	0.07	12.14	0.01	2.374	0.44	0.00	1.3	98.7	0.0	-2.09	0.61	0.67	2.20	3.1	0.002	0.53	0.0	0.04	14.71	0.00	2.203	2.82	0.07	2.1	97.9	0.0	1.19	0.75	0.73	0.78	1.81	47885	2935	9	0	0	0	24225	logfile
✔	7M61	23686	2022-04-04	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.004	0.78	0.0	0.05	14.97	0.00	2.122	20.78	1.03	14.8	85.2	0.0	-4.62	0.86	0.47	0.75	2.83	1690	230	10	0	10	0	0	logfile
✔	7PEB	13351	2022-04-07	2021-08-09	3.67	4.11	—	3.9	0.002	0.52	0.0	0.04	13.94	0.00	2.245	4.50	2.69	5.1	94.9	0.1	-2.66	0.71	0.73	1.45	3.9	0.003	0.71	0.0	0.04	15.49	0.00	2.078	11.11	0.41	3.6	96.4	0.0	0.89	2.13	0.72	0.75	1.13	29140	3611	5	0	57	0	0	logfile
✔	7RTV	24690	2022-04-04	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.05	18.50	0.00	2.197	15.60	0.32	3.0	97.0	0.0	2.57	0.49	0.42	0.64	0.60	2881	366	3	0	6	0	0	logfile
✔	6YT5	10912	2022-04-09	2020-04-23	3.0	2.67	—	3.3	0.010	0.73	0.0	0.05	15.51	0.00	2.196	13.76	0.15	8.0	92.0	0.0	-4.28	0.85	0.81	2.08	3.3	0.004	0.76	0.0	0.04	17.73	0.01	2.144	11.76	1.90	3.6	96.4	0.0	0.71	0.54	0.83	0.81	1.27	39078	5040	12	0	0	0	0	logfile
✔	7V5G	31724	2022-04-09	2021-08-17	4.47	4.49	—	3.6	0.002	0.50	1.0	0.04	7.72	0.00	2.210	9.85	0.08	5.7	94.2	0.1	-2.80	0.86	0.71	—	3.8	0.004	0.73	0.0	0.04	12.29	0.00	2.034	21.47	0.02	4.3	95.7	0.0	-0.67	2.25	0.89	0.79	—	48150	6193	28	0	0	0	0	logfile
✔	7V5M	31727	2022-04-09	2021-08-17	3.88	4.12	—	3.8	0.002	0.61	0.0	0.04	7.67	0.00	2.155	9.48	0.00	3.0	96.9	0.1	-2.87	0.80	0.69	1.03	3.8	0.005	0.84	0.0	0.05	14.29	0.00	2.001	17.49	0.52	3.3	96.7	0.0	-0.10	1.82	0.90	0.85	2.17	45340	6198	28	0	0	0	0	logfile
✔	7S67	24852	2022-04-06	2021-09-13	3.8	3.64	3.80	3.9	0.013	1.39	0.0	0.07	11.90	0.01	1.815	5.58	0.00	1.5	98.5	0.0	0.25	0.70	0.73	2.10	3.8	0.005	0.77	0.0	0.05	16.35	0.01	1.910	13.76	0.66	2.4	97.6	0.0	0.06	2.75	0.71	0.80	1.69	23058	2892	12	0	24	0	0	logfile
✔	7S66	24851	2022-04-06	2021-09-13	2.8	3.06	2.88	3.1	0.013	1.34	0.0	0.06	10.54	0.01	1.770	2.28	0.00	1.4	98.6	0.0	0.50	0.75	0.83	3.82	3.0	0.003	0.54	0.0	0.04	16.32	0.00	1.869	5.01	2.04	1.6	98.4	0.0	0.85	1.36	0.73	0.85	3.48	23242	2910	12	0	24	0	0	logfile
✔	7S65	24850	2022-04-06	2021-09-13	3.2	3.04	3.23	3.3	0.014	1.46	0.0	0.07	11.66	0.01	1.385	8.25	0.26	2.0	98.0	0.0	0.19	0.64	0.74	3.55	3.2	0.007	0.68	0.0	0.04	15.87	0.01	1.819	9.43	0.17	2.4	97.6	0.0	0.47	0.69	0.65	0.79	3.23	22049	2760	12	0	24	0	0	logfile
✔	7N6Q	24208	2022-04-05	2021-06-08	3.87	3.99	—	4.0	0.014	1.80	0.0	0.08	16.00	0.00	2.223	7.63	1.55	7.5	92.5	0.0	-4.50	0.51	0.68	2.01	4.0	0.003	0.73	0.0	0.05	17.54	0.00	2.201	9.97	0.31	5.5	94.5	0.0	0.01	2.52	0.66	0.81	1.47	12752	1500	8	0	16	0	0	logfile
✔	7M1X	23626	2022-04-05	2021-03-15	3.7	4.26	—	4.1	0.007	0.78	0.0	0.04	29.10	0.01	2.244	6.51	2.27	5.5	94.4	0.1	-1.56	0.83	0.84	1.52	4.1	0.006	0.72	0.0	0.04	29.27	0.00	2.056	17.81	0.65	5.6	94.4	0.0	0.88	1.26	0.84	0.85	1.58	11475	746	10	272	0	0	0	logfile
✔	7BCQ	12142	2022-04-06	2020-12-21	3.43	3.61	3.36	3.8	0.013	1.05	0.0	0.15	13.48	0.01	2.098	3.22	0.00	5.5	94.5	0.0	-0.68	0.58	0.73	2.69	3.8	0.003	0.68	0.0	0.15	14.22	0.00	2.023	7.79	0.00	5.0	95.0	0.0	0.94	0.49	0.59	0.77	2.46	20160	1326	6	0	3	0	10299	logfile
✔	7BCT	12143	2022-04-06	2020-12-21	3.37	3.33	3.31	3.4	0.009	1.15	0.0	0.15	13.35	0.01	2.299	4.43	0.00	5.7	94.3	0.0	-0.74	0.51	0.67	2.81	3.4	0.004	0.79	0.0	0.17	14.90	0.00	2.003	10.40	0.58	5.9	94.1	0.0	1.14	0.79	0.56	0.73	2.59	20091	1326	3	0	0	0	10299	logfile
✔	7K8D	22728	2022-04-05	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.7	0.003	0.83	0.0	0.04	13.33	0.01	2.120	13.72	0.00	4.3	95.7	0.0	0.70	1.45	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	7JZY	22584	2022-04-07	2020-09-02	3.6	3.61	—	3.6	0.009	0.96	0.0	0.05	16.34	0.01	2.236	5.56	0.85	7.0	93.0	0.0	-3.78	0.81	0.85	2.54	3.5	0.006	0.89	1.0	0.04	17.32	0.00	1.653	12.31	0.09	5.9	94.1	0.0	-0.96	0.49	0.81	0.84	2.12	24539	3024	12	61	0	0	0	logfile
✔	7EW4	31347	2022-04-04	2021-05-24	3.2	3.38	—	3.4	0.002	0.50	0.0	0.14	14.00	0.00	2.237	7.77	0.00	2.0	98.0	0.0	1.05	0.67	0.74	2.41	3.4	0.012	1.19	1.0	0.05	15.26	0.01	2.083	9.91	0.10	2.7	97.3	0.0	0.67	0.36	0.68	0.79	2.39	8929	1145	6	0	3	0	0	logfile

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