Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XPD	22285	2023-11-13	2020-07-08	3.8	3.62	—	3.7	0.007	0.77	0.0	0.04	14.37	0.00	1.461	13.89	0.20	9.4	90.6	0.0	-3.83	0.60	0.85	1.65	3.6	0.004	0.74	0.0	0.04	16.57	0.00	1.952	11.43	0.78	5.4	94.6	0.0	1.02	1.38	0.60	0.83	2.03	4622	606	4	0	4	0	0	logfile
✔	7W9F	32366	2023-11-13	2021-12-09	3.6	2.59	—	2.2	0.003	0.73	0.0	0.05	13.99	0.01	2.302	3.37	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.63	0.0	0.04	16.02	0.00	2.165	10.00	0.55	4.0	96.0	0.0	-1.02	0.53	0.74	0.73	1.84	4856	625	3	0	0	0	0	logfile
✔	7E8B	31013	2023-11-22	2021-03-01	4.2	3.74	4.28	3.8	0.003	0.61	0.0	0.04	14.23	0.00	2.120	15.19	0.05	7.3	92.7	0.0	-1.09	0.67	0.65	—	3.6	0.005	0.74	0.0	0.05	14.51	0.01	2.108	21.99	0.05	9.2	90.8	0.0	-1.45	0.58	0.68	0.68	—	36832	4580	8	0	0	0	0	logfile
✔	8DEP	27394	2023-11-13	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	13.59	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.62	0.0	0.03	16.80	0.00	2.214	7.84	0.32	1.5	98.5	0.0	2.16	0.65	0.46	0.77	1.68	3223	398	1	0	4	0	0	logfile
✔	7oNi	12995	2023-11-14	2021-05-25	3.4	3.65	3.17	3.3	0.003	0.53	0.0	0.04	14.04	0.00	1.323	7.13	0.00	4.2	95.8	0.0	0.82	0.87	0.85	2.39	3.3	0.003	0.57	0.0	0.04	15.85	0.00	2.221	7.18	0.45	4.5	95.5	0.0	1.20	0.39	0.88	0.87	2.13	8840	1141	6	0	7	0	0	logfile
✔	8G6K	29772	2023-11-14	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.003	0.60	0.0	0.04	4.50	0.00	2.284	2.64	0.00	6.7	93.3	0.0	0.05	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	6oFJ	20047	2023-11-15	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.58	0.0	0.04	14.03	0.00	2.002	10.00	0.00	8.7	91.3	0.0	-1.93	1.22	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	6T0W	10361	2023-11-15	2019-10-03	3.18	3.27	3.23	3.2	0.008	0.80	0.0	0.05	14.46	0.01	2.251	4.31	6.26	5.6	94.3	0.1	-3.70	0.72	0.85	3.43	3.2	0.004	0.59	0.0	0.04	15.20	0.00	2.186	6.03	0.18	3.3	96.7	0.0	-0.02	0.53	0.73	0.86	3.28	10556	1268	4	25	0	0	0	logfile
✔	7o0U	12679	2023-11-14	2021-03-27	2.35	2.42	—	2.3	0.018	4.37	0.0	0.06	24.75	0.01	2.121	1.73	0.41	1.2	98.8	0.0	1.39	0.83	0.86	5.52	2.3	0.003	1.70	0.0	0.03	21.23	0.00	1.834	7.34	1.15	0.9	99.1	0.0	4.12	2.04	0.84	0.89	4.24	55758	4972	236	0	320	491	0	logfile
✔	8GXX	34364	2023-11-20	2022-09-21	3.0	2.61	3.12	2.9	0.006	0.56	0.0	0.04	11.56	0.00	1.758	5.57	0.06	3.0	96.9	0.0	0.65	0.67	0.82	3.77	2.8	0.003	0.59	0.0	0.04	16.97	0.00	1.956	7.51	2.76	2.1	97.9	0.0	0.94	1.10	0.74	0.85	3.19	29553	3788	15	0	5	0	0	logfile
✔	7Ki1	22883	2023-11-15	2020-10-22	2.5	2.57	2.46	2.6	0.013	0.93	0.0	0.06	15.54	0.00	2.257	8.41	0.28	3.5	96.5	0.0	-1.64	0.64	0.81	3.96	2.6	0.003	0.55	0.0	0.04	16.94	0.00	2.118	6.02	1.85	2.1	97.9	0.0	1.06	0.52	0.65	0.84	3.62	10265	1285	11	0	1	73	0	logfile
✔	7UAG	26425	2023-11-14	2022-03-12	3.5	3.78	3.45	3.9	0.004	0.66	0.0	0.05	13.11	0.01	2.247	17.66	0.00	6.5	93.4	0.1	-1.43	0.65	0.67	1.75	3.8	0.005	0.70	0.0	0.05	15.39	0.01	2.060	17.86	0.37	6.8	93.2	0.0	-1.47	0.40	0.67	0.68	1.33	7588	938	2	0	0	0	0	logfile
✔	7EZH	31387	2023-11-14	2021-06-01	3.2	2.28	—	2.1	0.004	0.68	1.0	0.05	12.75	0.01	2.278	2.69	0.74	4.7	95.2	0.1	-1.38	0.73	0.72	2.97	2.1	0.003	0.69	0.0	0.04	15.50	0.00	2.128	12.18	0.64	2.7	97.3	0.0	0.92	1.61	0.75	0.76	2.13	8838	1150	6	0	0	0	0	logfile
✔	7UC2	26442	2023-11-16	2022-03-15	2.5	2.71	2.55	2.8	0.009	0.94	0.0	0.05	19.35	0.00	2.199	8.35	1.02	1.9	98.1	0.0	0.65	0.75	0.87	4.24	2.8	0.003	0.53	0.0	0.04	18.79	0.00	2.144	8.44	3.06	2.1	97.9	0.0	0.26	0.36	0.75	0.89	4.12	15820	1900	12	0	8	28	0	logfile
✔	7ZDA	14639	2023-11-14	2022-03-29	3.17	3.35	3.16	3.3	0.006	0.77	0.0	0.05	14.78	0.01	1.941	8.77	0.11	1.7	98.3	0.0	-2.09	0.75	0.84	3.16	3.3	0.003	0.65	0.0	0.04	16.44	0.00	1.982	7.68	0.11	1.6	98.4	0.0	1.12	1.02	0.73	0.88	2.16	9052	1159	4	0	5	0	0	logfile
✔	7MTE	23984	2023-11-17	2021-05-13	3.2	2.75	3.06	3.1	0.005	0.82	0.0	0.06	9.37	0.01	2.298	2.16	0.04	4.5	95.5	0.0	-3.17	0.74	0.84	3.68	3.0	0.003	0.60	0.0	0.05	13.69	0.00	2.184	4.41	0.31	5.0	95.0	0.0	-0.50	1.38	0.76	0.87	3.17	20612	2568	20	0	42	0	0	logfile
✔	7X2C	32964	2023-11-15	2022-02-25	3.2	3.88	—	3.8	0.006	0.71	0.0	0.05	13.60	0.00	2.102	9.59	0.48	2.0	98.0	0.0	0.97	0.58	0.72	1.80	3.8	0.003	0.58	0.0	0.04	15.52	0.00	2.106	10.23	0.48	2.0	98.0	0.0	0.97	0.37	0.56	0.70	1.04	7953	1031	6	0	3	0	0	logfile
✔	7SNi	25227	2023-11-16	2021-10-28	2.5	2.71	—	2.8	0.006	0.74	0.0	0.05	17.05	0.00	2.239	8.51	0.06	2.1	97.9	0.0	-0.02	0.71	0.80	3.21	2.8	0.005	0.62	0.0	0.05	18.35	0.00	2.007	12.96	1.40	2.6	97.4	0.0	-0.29	0.36	0.68	0.81	3.49	16533	1952	12	0	12	233	0	logfile
✔	7UiX	26556	2023-11-19	2022-03-29	3.24	3.26	—	3.3	0.004	0.79	0.0	0.04	14.12	0.00	2.013	2.99	0.02	0.1	99.9	0.0	-0.81	0.62	0.80	2.80	3.3	0.012	0.73	0.0	0.04	16.82	0.01	1.703	9.66	0.32	3.3	96.7	0.0	0.33	0.82	0.60	0.84	2.84	76307	4820	20	0	23	0	38286	logfile
✔	7Q9G	13869	2023-11-20	2021-11-12	3.3	3.52	—	3.4	0.003	0.50	0.0	0.04	9.49	0.00	2.034	4.08	0.67	3.1	96.9	0.0	-0.07	0.82	0.80	2.69	3.4	0.003	0.55	0.0	0.04	12.53	0.00	2.214	7.62	0.25	3.2	96.8	0.0	0.49	0.58	0.84	0.85	2.43	28973	3632	22	0	52	0	0	logfile

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