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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7A97 | 11687 | 2024-03-22 | 2020-09-01 | 4.4 | 5.14 | 4.59 | 4.5 | 0.002 | 0.48 | 1.0 | 0.04 | 5.51 | 0.00 | 2.074 | 4.87 | 0.26 | 10.3 | 89.7 | 0.0 | -4.43 | 0.88 | 0.78 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.04 | 9.01 | 0.00 | 2.112 | 12.08 | 0.03 | 3.9 | 96.1 | 0.0 | -0.96 | 2.57 | 0.90 | 0.83 | — | 34626 | 4373 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oJ3 | 20086 | 2024-03-25 | 2019-04-10 | 4.5 | 4.52 | 4.52 | 4.5 | 0.010 | 1.29 | 0.0 | 0.07 | 10.21 | 0.01 | 2.062 | 3.55 | 0.01 | 9.0 | 91.0 | 0.0 | -3.41 | 0.63 | 0.73 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.04 | 13.81 | 0.01 | 1.822 | 15.77 | 0.04 | 7.6 | 92.4 | 0.0 | -1.24 | 2.16 | 0.66 | 0.78 | — | 148557 | 9072 | 11 | 0 | 0 | 0 | 74462 | logfile |
✔ | 7PBU | 13303 | 2024-03-17 | 2021-08-02 | 3.3 | 2.68 | — | 3.4 | 0.005 | 0.82 | 0.0 | 0.05 | 16.55 | 0.01 | 2.364 | 1.82 | 0.00 | 1.1 | 98.9 | 0.0 | 0.22 | 0.60 | 0.76 | 2.90 | 3.4 | 0.005 | 0.62 | 0.0 | 0.04 | 20.38 | 0.00 | 2.118 | 5.40 | 3.16 | 1.4 | 98.6 | 0.0 | 1.01 | 1.84 | 0.61 | 0.79 | 1.50 | 19243 | 1063 | 12 | 68 | 0 | 0 | 9507 | logfile |
✔ | 6Si7 | 10206 | 2024-03-18 | 2019-08-08 | 3.4 | 3.48 | — | 3.4 | 0.004 | 0.79 | 0.0 | 0.05 | 14.71 | 0.01 | 2.267 | 12.97 | 0.00 | 9.2 | 90.8 | 0.0 | -4.55 | 0.71 | 0.77 | 1.03 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.58 | 0.00 | 2.230 | 19.95 | 4.00 | 7.5 | 92.5 | 0.0 | -1.26 | 0.58 | 0.75 | 0.82 | 1.21 | 19476 | 2502 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KoX | 22983 | 2024-03-21 | 2020-11-10 | 2.7 | 3.29 | 2.69 | 3.1 | 0.013 | 1.19 | 0.0 | 0.23 | 13.51 | 0.01 | 2.136 | 5.49 | 0.57 | 3.6 | 96.4 | 0.0 | -0.69 | 0.69 | 0.81 | 4.07 | 3.1 | 0.003 | 0.76 | 0.0 | 0.18 | 14.24 | 0.00 | 2.180 | 6.63 | 0.92 | 3.0 | 97.0 | 0.0 | 0.97 | 0.99 | 0.68 | 0.81 | 4.56 | 31350 | 1930 | 20 | 0 | 30 | 5 | 15410 | logfile |
✔ | 7C17 | 30268 | 2024-03-22 | 2020-05-02 | 4.22 | 4.29 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.05 | 16.45 | 0.01 | 1.995 | 7.54 | 0.21 | 5.7 | 94.3 | 0.0 | -4.63 | 0.79 | 0.69 | — | 4.2 | 0.003 | 0.72 | 0.0 | 0.04 | 16.47 | 0.00 | 2.120 | 19.52 | 0.03 | 7.1 | 92.9 | 0.0 | -1.62 | 0.85 | 0.82 | 0.75 | — | 33061 | 3995 | 12 | 104 | 4 | 0 | 0 | logfile |
✔ | 7A2G | 11624 | 2024-03-16 | 2020-08-17 | 4.1 | 6.36 | 4.20 | 6.0 | 0.006 | 0.86 | 0.0 | 0.04 | 15.22 | 0.01 | 1.869 | 47.63 | 0.49 | 16.3 | 83.4 | 0.2 | -5.55 | 0.86 | 0.78 | — | 6.0 | 0.003 | 0.76 | 0.0 | 0.04 | 14.41 | 0.00 | 2.028 | 28.62 | 0.00 | 11.4 | 88.6 | 0.0 | -1.91 | 0.72 | 0.86 | 0.79 | — | 13408 | 1680 | 12 | 0 | 4 | 4 | 0 | logfile |
✔ | 6V05 | 20969 | 2024-03-16 | 2019-11-18 | 4.1 | 4.20 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.05 | 13.87 | 0.00 | 2.054 | 9.26 | 0.75 | 3.6 | 96.3 | 0.1 | -2.86 | 0.70 | 0.79 | — | 4.1 | 0.003 | 0.64 | 0.0 | 0.04 | 13.32 | 0.00 | 2.193 | 8.92 | 0.00 | 4.4 | 95.6 | 0.0 | -0.29 | 1.07 | 0.70 | 0.76 | — | 13705 | 1884 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KY6 | 23069 | 2024-03-15 | 2020-12-07 | 3.1 | 3.28 | — | 3.2 | 0.006 | 0.70 | 0.0 | 0.05 | 17.71 | 0.00 | 2.092 | 12.79 | 7.34 | 6.9 | 92.9 | 0.2 | -2.79 | 0.69 | 0.85 | 2.99 | 3.2 | 0.004 | 0.60 | 0.0 | 0.04 | 17.61 | 0.00 | 2.049 | 9.79 | 4.81 | 5.6 | 94.4 | 0.0 | -0.07 | 0.33 | 0.68 | 0.86 | 2.69 | 10729 | 1322 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 7Z9R | 14576 | 2024-03-20 | 2022-03-21 | 4.2 | 3.82 | 4.08 | 4.0 | 0.008 | 1.40 | 15.0 | 0.10 | 14.18 | 0.02 | 1.182 | 6.11 | 1.21 | 3.3 | 96.6 | 0.0 | -1.16 | 0.71 | 0.73 | — | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 12.26 | 0.00 | 2.138 | 6.94 | 0.07 | 2.8 | 97.2 | 0.0 | 0.40 | 0.83 | 0.76 | 0.79 | — | 27078 | 3349 | 29 | 0 | 66 | 0 | 0 | logfile |
✔ | 6T8H | 10401 | 2024-03-18 | 2019-10-24 | 3.77 | 3.90 | 3.76 | 3.8 | 0.012 | 1.09 | 1.0 | 0.07 | 11.30 | 0.01 | 1.696 | 39.00 | 0.94 | 8.6 | 91.3 | 0.1 | -3.78 | 0.81 | 0.82 | 2.42 | 3.8 | 0.004 | 0.65 | 0.0 | 0.05 | 15.92 | 0.00 | 1.870 | 54.43 | 2.66 | 6.5 | 93.5 | 0.0 | -0.15 | 1.24 | 0.81 | 0.83 | 1.85 | 19398 | 2346 | 9 | 34 | 5 | 0 | 33 | logfile |
✔ | 7M4Q | 23664 | 2024-03-25 | 2021-03-22 | 2.87 | 2.54 | — | 2.6 | 0.011 | 1.08 | 3.0 | 0.06 | 15.29 | 0.01 | 2.198 | 5.41 | 2.63 | 2.4 | 97.5 | 0.1 | 0.60 | 0.54 | 0.72 | 3.10 | 2.6 | 0.004 | 0.58 | 0.0 | 0.04 | 17.10 | 0.00 | 1.922 | 5.93 | 3.32 | 2.4 | 97.6 | 0.0 | 1.30 | 0.60 | 0.66 | 0.79 | 2.97 | 48572 | 3142 | 5 | 0 | 8 | 0 | 24342 | logfile |
✔ | 6PV8 | 20488 | 2024-03-18 | 2019-07-19 | 3.87 | 4.04 | 3.94 | 4.0 | 0.006 | 1.07 | 1.0 | 0.07 | 14.13 | 0.01 | 2.057 | 5.07 | 0.69 | 4.9 | 95.1 | 0.0 | -2.83 | 0.70 | 0.79 | 2.52 | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 14.68 | 0.00 | 2.145 | 8.52 | 3.82 | 4.2 | 95.8 | 0.0 | -0.08 | 1.13 | 0.72 | 0.82 | 2.02 | 20051 | 2379 | 28 | 0 | 57 | 8 | 0 | logfile |
✔ | 6PV7 | 20487 | 2024-03-18 | 2019-07-19 | 3.34 | 3.54 | 3.37 | 3.5 | 0.007 | 1.12 | 0.0 | 0.07 | 13.86 | 0.01 | 1.952 | 5.21 | 0.64 | 5.0 | 95.0 | 0.0 | -2.91 | 0.75 | 0.83 | 3.22 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 14.24 | 0.00 | 2.217 | 6.38 | 3.40 | 3.1 | 96.9 | 0.0 | 0.56 | 1.25 | 0.73 | 0.86 | 2.58 | 20048 | 2379 | 28 | 0 | 58 | 8 | 0 | logfile |
✔ | 8DMF | 27535 | 2024-03-10 | 2022-07-08 | 4.0 | 4.71 | 3.73 | 4.1 | 0.003 | 0.64 | 0.0 | 0.05 | 14.28 | 0.00 | 1.977 | 13.96 | 0.00 | 5.0 | 95.0 | 0.0 | -0.20 | 0.81 | 0.83 | — | 4.1 | 0.005 | 0.73 | 0.0 | 0.04 | 16.01 | 0.00 | 1.812 | 21.12 | 1.14 | 7.4 | 92.6 | 0.0 | -0.69 | 0.44 | 0.82 | 0.84 | — | 5670 | 718 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7EZ0 | 31385 | 2024-03-11 | 2021-06-01 | 3.14 | 3.26 | — | 3.2 | 0.003 | 0.56 | 0.0 | 0.03 | 23.64 | 0.00 | 1.804 | 2.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.74 | 0.79 | — | 3.2 | 0.006 | 0.70 | 0.0 | 0.04 | 23.85 | 0.00 | 1.860 | 8.26 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.55 | 0.77 | 0.86 | — | 8306 | 0 | 1 | 387 | 27 | 0 | 0 | logfile |
✔ | 7UN8 | 26616 | 2024-03-16 | 2022-04-09 | 3.3 | 3.12 | 3.18 | 3.3 | 0.014 | 0.99 | 1.0 | 0.11 | 15.82 | 0.01 | 1.944 | 13.55 | 0.06 | 6.3 | 93.5 | 0.2 | -1.88 | 0.69 | 0.80 | 1.68 | 3.2 | 0.003 | 0.66 | 0.0 | 0.04 | 17.46 | 0.00 | 2.175 | 13.69 | 2.61 | 3.8 | 96.2 | 0.0 | -0.13 | 0.58 | 0.71 | 0.84 | 2.21 | 14067 | 1780 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 6X40 | 22038 | 2024-03-17 | 2020-05-21 | 2.86 | 3.10 | 2.91 | 3.0 | 0.008 | 1.12 | 3.0 | 0.13 | 14.33 | 0.01 | 2.233 | 7.24 | 0.42 | 4.2 | 95.8 | 0.0 | -2.03 | 0.71 | 0.86 | 4.16 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 15.61 | 0.00 | 2.176 | 10.59 | 3.72 | 3.3 | 96.7 | 0.0 | 0.02 | 0.97 | 0.69 | 0.87 | 3.59 | 17411 | 2121 | 17 | 0 | 26 | 0 | 0 | logfile |
✔ | 6QLD | 4579 | 2024-03-21 | 2019-01-31 | 4.15 | 4.29 | — | 4.1 | 0.004 | 0.86 | 1.0 | 0.05 | 21.70 | 0.01 | 2.289 | 5.03 | 0.25 | 5.1 | 94.8 | 0.2 | -3.52 | 0.83 | 0.76 | — | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 21.26 | 0.00 | 2.175 | 13.11 | 0.12 | 5.8 | 94.2 | 0.0 | 1.00 | 0.70 | 0.83 | 0.76 | — | 29086 | 3157 | 22 | 248 | 0 | 0 | 0 | logfile |
✔ | 6TE9 | 10477 | 2024-03-14 | 2019-11-11 | 3.58 | 3.70 | — | 3.6 | 0.011 | 1.32 | 0.0 | 0.08 | 10.50 | 0.01 | 0.891 | 13.02 | 0.82 | 9.9 | 90.0 | 0.1 | -5.43 | 0.77 | 0.85 | 3.48 | 3.6 | 0.004 | 0.78 | 0.0 | 0.04 | 15.50 | 0.00 | 2.177 | 14.68 | 4.44 | 7.2 | 92.8 | 0.0 | -1.45 | 0.68 | 0.77 | 0.85 | 2.06 | 66906 | 8892 | 42 | 0 | 0 | 0 | 0 | logfile |