Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SQV	25396	2023-02-17	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	7M30	23640	2023-02-19	2021-03-17	3.81	2.76	3.80	2.1	0.005	1.15	0.0	0.07	13.59	0.01	1.711	9.02	0.89	5.3	94.7	0.0	-0.94	0.68	0.56	1.80	2.2	0.004	1.02	0.0	0.05	17.24	0.01	2.036	26.35	1.09	6.3	93.7	0.0	-0.68	3.36	0.75	0.72	1.14	9191	1167	12	0	2	0	0	logfile
✔	7UY7	26866	2023-02-21	2022-05-06	4.2	4.18	4.04	3.2	0.002	0.56	1.0	0.04	15.12	0.00	2.203	13.96	0.18	3.8	96.2	0.0	-0.53	0.73	0.74	—	3.1	0.003	0.60	0.0	0.04	15.60	0.00	2.193	13.43	0.00	5.1	94.9	0.0	-0.61	1.23	0.73	0.76	—	15161	1808	7	10	1	0	0	logfile
✔	7VAU	31864	2023-02-27	2021-08-30	3.3	2.83	3.35	3.2	0.007	0.69	0.0	0.05	13.63	0.00	1.966	5.17	0.00	2.6	97.4	0.0	0.84	0.60	0.81	2.86	3.1	0.004	0.59	0.0	0.04	16.36	0.00	1.965	6.66	0.52	2.8	97.2	0.0	0.21	1.12	0.63	0.85	2.44	29513	3787	14	0	4	0	0	logfile
✔	7B6D	12052	2023-02-19	2020-12-07	4.27	2.60	—	2.5	0.005	0.87	0.0	0.05	14.40	0.01	2.049	32.99	0.43	10.2	89.7	0.1	-2.46	0.78	0.74	—	2.5	0.003	0.72	0.0	0.05	14.41	0.00	2.080	23.40	0.00	9.1	90.9	0.0	-1.38	1.33	0.78	0.75	—	10470	1290	8	0	0	0	0	logfile
✔	8FiS	29209	2023-02-23	2022-12-16	3.18	3.36	3.47	3.5	0.004	0.62	1.0	0.05	14.61	0.00	2.110	3.15	0.25	5.5	94.5	0.0	-0.93	0.80	0.80	2.46	3.5	0.003	0.58	0.0	0.04	15.32	0.00	2.064	6.83	0.20	5.3	94.6	0.0	-0.27	0.61	0.80	0.84	2.16	20356	2357	57	0	142	0	0	logfile
✔	7V24	31636	2023-02-17	2021-08-07	3.29	3.50	—	3.4	0.006	0.80	0.0	0.05	13.64	0.00	2.164	11.90	0.24	11.3	88.7	0.0	-1.86	0.67	0.83	3.60	3.4	0.005	0.69	0.0	0.04	15.40	0.00	2.137	10.96	0.00	10.4	89.6	0.0	-1.14	0.40	0.66	0.84	3.54	3814	487	3	0	0	0	0	logfile
✔	6Q9D	4480	2023-02-26	2018-12-18	3.8	3.99	—	3.9	0.007	1.15	0.0	1.60	10.39	0.01	2.107	6.41	0.24	10.8	89.0	0.2	-4.23	0.74	0.82	2.23	3.9	0.012	2.41	0.0	0.48	15.95	0.00	2.100	13.81	0.27	9.4	90.6	0.0	-1.43	2.17	0.74	0.83	1.66	27662	3463	26	0	12	0	0	logfile
✔	7VAY	31871	2023-02-27	2021-08-30	3.3	2.93	3.28	3.2	0.005	0.59	0.0	0.04	13.52	0.00	1.949	6.21	0.00	2.6	97.4	0.0	1.07	0.63	0.77	3.23	3.1	0.006	0.65	0.0	0.05	16.18	0.01	1.933	8.94	0.32	2.9	97.1	0.0	0.22	1.06	0.72	0.86	3.30	29553	3788	16	0	5	0	0	logfile
✔	7ZF2	14696	2023-02-24	2022-03-31	3.86	3.97	3.73	3.9	0.007	0.62	0.0	0.04	13.32	0.00	2.162	10.43	5.77	5.7	94.3	0.0	0.01	0.78	0.86	1.96	3.9	0.003	0.62	0.0	0.04	15.06	0.00	2.212	9.61	0.43	3.7	96.3	0.0	0.47	0.39	0.78	0.85	1.40	23822	3068	7	0	3	0	0	logfile
✔	7CWM	30483	2023-02-27	2020-08-29	3.6	4.19	—	3.6	0.008	1.04	2.0	0.07	9.90	0.01	1.512	22.14	0.54	7.7	92.3	0.1	-3.56	0.73	0.65	1.87	3.6	0.003	0.63	0.0	0.04	12.51	0.00	2.218	11.92	0.09	5.1	94.9	0.0	-1.05	0.78	0.83	0.79	1.63	30772	3883	26	0	44	0	0	logfile
✔	6VRL	21370	2023-02-17	2020-02-07	3.8	3.98	4.22	3.9	0.002	0.56	0.0	0.04	14.02	0.00	2.159	10.57	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	3.9	0.003	0.71	0.0	0.04	16.18	0.00	2.038	17.54	0.46	6.6	93.4	0.0	-1.10	0.78	0.50	0.70	1.42	6141	764	4	0	4	0	0	logfile
✔	7T3o	25666	2023-02-17	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.003	0.66	0.0	0.04	16.17	0.00	2.229	6.17	0.00	3.6	96.4	0.0	0.21	0.58	0.48	0.84	1.64	3410	452	1	0	0	0	0	logfile
✔	7MiS	23863	2023-02-25	2021-04-17	2.8	2.48	—	2.8	0.003	0.50	0.0	0.04	14.51	0.00	1.917	3.78	0.00	3.8	96.2	0.0	0.91	0.69	0.80	3.35	2.8	0.003	0.49	0.0	0.04	16.11	0.00	1.856	4.05	0.63	3.8	96.2	0.0	1.04	0.35	0.70	0.82	3.05	25893	1616	6	0	6	0	12854	logfile
✔	7Li8	23363	2023-02-17	2021-01-26	3.9	4.37	—	4.3	0.002	0.60	0.0	0.04	10.77	0.00	2.230	6.84	0.00	5.3	94.7	0.0	-3.23	0.62	0.72	1.26	4.3	0.003	0.71	0.0	0.04	14.24	0.00	2.202	10.39	0.16	7.1	92.9	0.0	-1.27	2.18	0.64	0.76	1.67	6181	767	5	0	14	0	0	logfile
✔	7N65	24195	2023-02-23	2021-06-07	4.15	4.35	—	4.2	0.011	1.18	0.0	0.06	14.11	0.01	1.935	35.99	4.29	15.2	84.6	0.2	-4.44	0.78	0.77	—	4.2	0.005	0.85	0.0	0.05	12.89	0.00	2.103	22.87	0.05	12.1	87.9	0.0	-3.06	0.72	0.77	0.76	—	21525	2454	72	0	189	0	0	logfile
✔	7QUQ	14151	2023-02-23	2022-01-18	2.6	2.44	—	2.8	0.009	0.94	0.0	0.05	12.93	0.01	2.144	15.78	0.10	4.7	95.3	0.0	-1.38	0.64	0.65	1.63	2.8	0.003	0.71	0.0	0.05	16.43	0.00	2.097	20.72	2.08	4.9	95.1	0.0	-0.87	1.61	0.67	0.70	1.59	19095	2457	12	0	6	0	0	logfile
✔	6R4o	4721	2023-02-19	2019-03-22	4.2	4.81	—	4.6	0.006	1.21	0.0	0.06	12.61	0.01	1.774	10.02	0.48	8.2	91.8	0.0	-4.45	0.64	0.71	—	4.6	0.003	0.72	0.0	0.04	13.28	0.00	2.001	14.04	0.10	5.8	94.2	0.0	0.01	1.02	0.64	0.72	—	9602	1182	4	0	6	0	0	logfile
✔	7VAX	31869	2023-02-27	2021-08-30	2.9	2.65	2.96	2.8	0.003	0.51	0.0	0.04	13.46	0.00	2.017	4.97	0.03	2.0	98.0	0.0	1.44	0.60	0.81	3.35	2.7	0.003	0.58	0.0	0.04	16.92	0.00	1.970	8.02	2.17	2.1	97.9	0.0	0.57	0.55	0.67	0.86	3.10	29553	3788	15	0	5	0	0	logfile
✔	7TRJ	26098	2023-02-25	2022-01-29	2.8	3.41	—	3.3	0.003	0.84	0.0	0.05	16.16	0.00	2.080	9.67	6.92	3.6	96.3	0.1	-1.80	0.78	0.82	2.52	3.3	0.004	0.64	0.0	0.04	16.60	0.00	2.120	7.40	3.64	4.1	95.9	0.0	1.01	0.70	0.79	0.85	2.99	25190	3234	10	0	0	0	0	logfile

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