Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6T61	10381	2021-08-10	2019-10-17	3.7	3.68	—	3.6	0.006	0.93	0.0	0.05	15.61	0.01	0.321	8.29	0.00	8.1	91.9	0.0	-3.35	0.50	0.77	1.47	3.6	0.006	0.94	0.0	0.05	17.88	0.01	1.714	14.93	0.48	6.4	93.6	0.0	0.68	1.65	0.52	0.79	0.99	30978	3906	18	0	0	0	0	logfile
✔	6S3K	10092	2021-08-07	2019-06-25	3.7	4.09	3.85	4.1	0.008	1.12	0.0	0.06	15.38	0.01	2.276	5.87	0.62	10.7	89.3	0.0	-4.54	0.57	0.75	0.73	4.1	0.004	0.74	0.0	0.04	16.94	0.01	2.279	10.26	0.31	8.1	91.9	0.0	0.53	3.50	0.56	0.72	0.73	8902	1146	4	0	6	0	0	logfile
✔	5YQ7	6828	2021-08-09	2017-11-05	4.1	4.39	—	4.3	0.021	3.62	0.0	0.05	19.01	0.01	1.542	19.78	0.14	14.6	85.2	0.2	-4.34	0.63	0.77	—	4.3	0.005	2.22	0.0	0.04	17.15	0.00	1.843	12.39	0.07	12.9	87.1	0.0	-1.28	1.43	0.64	0.78	—	20009	2107	68	0	120	0	0	logfile
✔	6oSL	20185	2021-08-07	2019-05-01	3.0	3.04	—	3.0	0.010	1.06	0.0	0.07	13.47	0.00	2.308	12.48	2.44	12.3	87.7	0.0	-4.40	0.45	0.79	1.34	3.0	0.005	0.80	0.0	0.06	15.98	0.00	2.271	12.73	9.27	8.4	91.6	0.0	-3.57	1.25	0.46	0.80	1.93	4060	590	10	0	0	0	0	logfile
✔	6PQX	20455	2021-08-07	2019-07-10	4.6	4.84	—	4.7	0.006	0.99	0.0	0.06	23.23	0.01	2.222	16.07	2.35	5.2	94.1	0.6	-3.41	0.78	0.79	—	4.7	0.003	0.67	0.0	0.04	22.96	0.01	2.101	17.68	0.00	5.4	94.6	0.0	-0.80	1.66	0.76	0.74	—	10116	960	10	120	4	0	0	logfile
✔	6K4Y	9916	2021-08-10	2019-05-27	3.79	3.88	—	3.9	0.008	0.99	0.0	0.06	14.87	0.01	2.242	8.93	0.68	7.6	92.3	0.1	-4.54	0.61	0.69	1.81	3.8	0.006	0.77	0.0	0.05	17.93	0.01	2.030	12.24	0.47	7.7	92.3	0.0	-1.20	1.59	0.71	0.78	1.29	33247	3950	11	105	3	0	0	logfile
✔	6N1H	8902	2021-08-08	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	30.92	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.69	0.0	0.04	17.79	0.01	2.180	9.31	3.04	6.6	93.4	0.0	1.00	4.70	0.63	0.84	1.76	10991	1328	16	0	0	0	0	logfile
✔	6P5J	20256	2021-08-16	2019-05-30	3.1	3.21	3.52	3.2	0.010	1.34	1.0	0.10	17.13	0.00	2.213	2.59	2.19	9.4	90.0	0.5	-4.21	0.62	0.71	1.96	3.2	0.006	0.76	3.0	0.04	17.83	0.01	1.923	15.39	0.52	7.8	92.2	0.0	-2.48	1.37	0.66	0.74	1.73	215969	11490	81	5766	0	0	0	logfile
✔	6N9Y	0383	2021-08-07	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	4.80	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.71	0.0	0.04	15.77	0.00	2.172	12.94	0.21	7.5	92.5	0.0	-1.13	1.78	0.40	0.79	—	4527	552	1	0	0	0	0	logfile
✔	6ACH	9592	2021-08-09	2018-07-26	3.2	3.31	—	3.3	0.068	1.82	0.0	0.07	12.66	0.01	1.393	2.80	1.03	7.2	92.8	0.0	-3.92	0.74	0.81	4.44	3.3	0.005	0.73	0.0	0.05	15.17	0.00	2.200	6.13	1.16	4.5	95.5	0.0	0.01	1.89	0.77	0.88	3.63	23240	2912	16	0	8	0	0	logfile
✔	5WPT	8882	2021-08-08	2017-08-07	3.75	3.87	—	3.8	0.008	1.03	0.0	0.05	11.16	0.01	2.276	2.56	0.24	8.1	91.7	0.2	-5.18	0.62	0.82	3.22	3.8	0.003	0.75	0.0	0.04	15.83	0.01	2.222	7.35	0.18	6.6	93.4	0.0	0.87	0.99	0.63	0.81	1.84	14889	1816	8	0	9	0	0	logfile
✔	6iUG	9734	2021-08-08	2018-11-28	3.9	3.96	—	3.8	0.005	0.90	0.0	0.05	10.73	0.01	2.105	7.69	0.96	8.4	91.6	0.0	-3.83	0.72	0.83	1.84	3.8	0.004	0.79	0.0	0.05	14.35	0.00	1.942	16.93	0.26	8.8	91.2	0.0	-0.98	1.34	0.72	0.84	1.64	14585	1855	10	0	10	0	0	logfile
✔	6J40	9777	2021-08-12	2019-01-07	3.8	4.30	—	3.8	0.112	3.66	4.0	0.19	22.22	0.03	1.376	17.66	0.33	4.5	95.5	0.0	-5.08	0.80	0.72	1.93	3.8	0.010	2.99	1.0	0.07	22.98	0.01	1.299	71.20	0.22	4.7	95.2	0.0	-3.19	0.52	0.83	0.76	1.85	96390	8392	120	0	1656	0	0	logfile
✔	6NT7	0504	2021-08-07	2019-01-28	4.0	4.27	—	4.1	0.008	0.91	0.0	0.05	14.13	0.01	2.238	5.64	0.00	6.2	93.8	0.0	-3.29	0.75	0.85	—	4.1	0.004	0.69	0.0	0.04	15.90	0.00	2.243	9.72	0.20	4.1	95.9	0.0	0.75	1.47	0.76	0.85	—	4729	588	3	0	1	0	0	logfile
✔	5WPQ	8881	2021-08-08	2017-08-07	3.64	3.71	—	3.7	0.005	0.96	0.0	0.05	11.37	0.01	2.310	2.00	0.49	5.9	94.1	0.0	-4.69	0.58	0.79	2.64	3.7	0.002	0.66	0.0	0.04	15.88	0.00	2.231	6.96	0.43	4.8	95.2	0.0	1.23	0.94	0.59	0.79	1.11	14889	1816	8	0	9	0	0	logfile
✔	5TV4	8469	2021-08-07	2016-11-08	4.2	4.13	—	4.0	0.007	1.26	0.0	0.06	12.31	0.01	1.511	45.35	0.48	13.1	86.2	0.7	-5.82	0.48	0.57	—	4.0	0.003	0.71	0.0	0.04	10.14	0.00	2.169	7.01	0.00	4.1	95.9	0.0	1.10	0.95	0.53	0.65	—	6548	1140	4	0	17	0	0	logfile
✔	6HRE	0259	2021-08-07	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	5.59	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	3.3	0.004	0.79	0.0	0.05	17.07	0.00	2.194	6.99	0.50	5.8	94.2	0.0	-3.28	0.79	0.29	0.77	3.95	3522	462	6	0	0	0	0	logfile
✔	6Y1A	10669	2021-08-07	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.004	0.70	0.0	0.04	10.74	0.00	2.058	13.24	0.60	7.3	92.7	0.0	-4.93	1.56	0.57	0.75	—	2960	400	32	0	16	0	0	logfile
✔	6A96	6998	2021-08-08	2018-07-11	3.51	4.46	—	4.3	0.008	0.96	0.0	0.06	10.88	0.01	2.158	6.30	0.22	7.3	92.7	0.0	-3.71	0.74	0.77	1.32	4.2	0.004	0.89	0.0	0.05	16.50	0.01	2.130	15.38	0.22	4.3	95.7	0.0	-1.21	3.70	0.76	0.80	1.37	17049	2043	13	0	44	0	0	logfile
✔	6RVX	10016	2021-08-07	2019-06-03	3.61	3.75	3.53	3.8	0.006	0.99	0.0	0.05	14.07	0.01	2.261	5.00	0.29	8.0	92.0	0.0	-5.46	0.65	0.80	1.54	3.8	0.008	1.05	0.0	0.04	15.47	0.01	2.171	12.08	0.10	4.9	95.1	0.0	-1.28	1.13	0.64	0.80	0.88	9627	1290	3	0	0	0	0	logfile

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