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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EQS | 28544 | 2024-03-10 | 2022-10-09 | 3.1 | 3.53 | 3.10 | 3.4 | 0.005 | 0.74 | 0.0 | 0.04 | 19.17 | 0.00 | 2.219 | 12.31 | 0.00 | 2.8 | 97.2 | 0.0 | 0.01 | 0.66 | 0.82 | 2.72 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 20.40 | 0.00 | 2.149 | 8.72 | 1.80 | 2.3 | 97.7 | 0.0 | 2.08 | 1.14 | 0.70 | 0.87 | 2.22 | 3654 | 438 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7EKi | 31168 | 2024-03-16 | 2021-04-05 | 3.18 | 3.70 | — | 3.6 | 0.005 | 0.63 | 0.0 | 0.06 | 12.21 | 0.00 | 2.230 | 5.79 | 0.88 | 5.3 | 94.7 | 0.0 | -1.88 | 0.69 | 0.81 | 2.83 | 3.6 | 0.002 | 0.53 | 0.0 | 0.04 | 13.17 | 0.00 | 2.176 | 4.72 | 0.64 | 5.1 | 94.9 | 0.0 | -0.29 | 0.37 | 0.68 | 0.81 | 2.49 | 16005 | 1975 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 7XR4 | 33407 | 2024-03-14 | 2022-05-09 | 3.4 | 3.26 | 3.35 | 3.4 | 0.007 | 0.94 | 0.0 | 0.05 | 15.58 | 0.00 | 2.304 | 10.91 | 0.29 | 2.1 | 97.9 | 0.0 | 1.68 | 0.73 | 0.85 | 1.65 | 3.4 | 0.003 | 0.53 | 0.0 | 0.04 | 14.73 | 0.00 | 2.236 | 9.81 | 1.43 | 1.2 | 98.8 | 0.0 | 3.16 | 1.09 | 0.71 | 0.85 | 1.42 | 10026 | 1278 | 6 | 0 | 27 | 0 | 0 | logfile |
✔ | 6PEK | 20327 | 2024-03-15 | 2019-06-20 | 4.2 | 4.25 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.03 | 13.79 | 0.00 | 1.913 | 4.42 | 0.00 | 0.8 | 99.2 | 0.0 | -2.47 | 0.70 | 0.74 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.04 | 14.94 | 0.00 | 1.037 | 15.04 | 0.00 | 3.0 | 97.0 | 0.0 | -0.32 | 1.43 | 0.72 | 0.77 | — | 11106 | 1405 | 11 | 0 | 13 | 0 | 0 | logfile |
✔ | 6B3J | 7039 | 2024-03-14 | 2017-09-22 | 3.3 | 3.63 | 3.26 | 3.5 | 0.007 | 1.00 | 0.0 | 0.06 | 9.89 | 0.01 | 2.229 | 4.37 | 0.00 | 4.2 | 95.8 | 0.0 | 0.60 | 0.66 | 0.73 | 2.35 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 14.50 | 0.00 | 2.142 | 10.75 | 2.99 | 4.3 | 95.7 | 0.0 | 1.05 | 1.69 | 0.69 | 0.78 | 1.69 | 9034 | 1129 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PW4 | 20498 | 2024-03-18 | 2019-07-22 | 3.53 | 3.64 | — | 3.6 | 0.008 | 1.14 | 0.0 | 0.05 | 17.52 | 0.01 | 2.302 | 5.63 | 0.38 | 10.7 | 89.3 | 0.1 | -6.92 | 0.71 | 0.80 | 1.68 | 3.6 | 0.005 | 0.80 | 0.0 | 0.04 | 17.93 | 0.00 | 2.060 | 13.57 | 3.12 | 10.8 | 89.2 | 0.0 | -2.14 | 0.52 | 0.72 | 0.80 | 1.38 | 22348 | 2742 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 7ECV | 31058 | 2024-03-19 | 2021-03-13 | 3.43 | 3.52 | — | 3.5 | 0.006 | 0.86 | 0.0 | 0.05 | 17.83 | 0.01 | 1.818 | 11.10 | 0.87 | 7.5 | 92.4 | 0.1 | -4.11 | 0.74 | 0.80 | 2.31 | 3.5 | 0.002 | 0.59 | 0.0 | 0.04 | 18.34 | 0.00 | 2.093 | 10.00 | 3.06 | 6.0 | 94.0 | 0.0 | -0.84 | 0.53 | 0.74 | 0.80 | 1.84 | 24153 | 3121 | 12 | 60 | 0 | 0 | 0 | logfile |
✔ | 6UVN | 20908 | 2024-03-21 | 2019-11-03 | 3.1 | 2.62 | — | 2.0 | 0.010 | 0.84 | 1.0 | 0.05 | 15.46 | 0.00 | 2.114 | 19.08 | 0.52 | 8.1 | 91.8 | 0.1 | -3.87 | 0.89 | 0.81 | 2.57 | 2.0 | 0.005 | 0.65 | 0.0 | 0.04 | 16.73 | 0.00 | 1.754 | 13.25 | 2.67 | 6.7 | 93.3 | 0.0 | -1.19 | 0.45 | 0.90 | 0.82 | 2.27 | 29487 | 3461 | 14 | 61 | 83 | 0 | 0 | logfile |
✔ | 7XD1 | 33132 | 2024-03-15 | 2022-03-26 | 3.2 | 2.74 | 3.19 | 3.1 | 0.009 | 0.87 | 0.0 | 0.05 | 26.77 | 0.01 | 2.339 | 2.77 | 1.59 | 1.3 | 98.7 | 0.0 | -5.83 | 0.76 | 0.83 | 4.00 | 3.1 | 0.003 | 0.61 | 0.0 | 0.04 | 28.31 | 0.00 | 2.067 | 7.15 | 2.54 | 1.7 | 98.3 | 0.0 | 1.54 | 0.47 | 0.78 | 0.84 | 2.66 | 12048 | 760 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 6LZ3 | 30022 | 2024-03-16 | 2020-02-18 | 3.2 | 3.37 | 3.26 | 3.3 | 0.007 | 1.20 | 0.0 | 0.06 | 17.57 | 0.01 | 2.201 | 4.66 | 3.86 | 8.7 | 90.9 | 0.4 | -6.45 | 0.80 | 0.81 | 2.16 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 16.93 | 0.00 | 2.072 | 9.61 | 2.90 | 8.1 | 91.9 | 0.0 | -2.06 | 0.67 | 0.80 | 0.83 | 2.60 | 15968 | 1944 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7BTo | 30180 | 2024-03-18 | 2020-04-02 | 3.97 | 4.13 | — | 4.0 | 0.005 | 1.12 | 0.0 | 0.06 | 11.73 | 0.01 | 1.372 | 7.27 | 0.35 | 13.6 | 86.4 | 0.0 | -4.82 | 0.84 | 0.75 | 1.40 | 4.0 | 0.003 | 0.78 | 0.0 | 0.05 | 14.69 | 0.00 | 2.040 | 14.79 | 2.42 | 10.9 | 89.1 | 0.0 | -2.31 | 0.88 | 0.85 | 0.77 | 1.32 | 21283 | 2644 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8H1J | 34428 | 2024-03-10 | 2022-10-03 | 3.1 | 3.36 | 3.20 | 3.3 | 0.005 | 0.53 | 0.0 | 0.03 | 22.06 | 0.00 | 2.232 | 8.41 | 5.19 | 1.7 | 98.3 | 0.0 | 2.19 | 0.62 | 0.67 | 2.02 | 3.3 | 0.004 | 0.53 | 0.0 | 0.03 | 22.24 | 0.00 | 2.149 | 7.92 | 4.55 | 2.5 | 97.5 | 0.0 | 1.16 | 0.50 | 0.73 | 0.80 | 1.48 | 5773 | 362 | 5 | 134 | 1 | 0 | 0 | logfile |
✔ | 8A5D | 15165 | 2024-03-15 | 2022-06-14 | 2.9 | 3.06 | 2.94 | 3.0 | 0.016 | 1.88 | 1.0 | 0.09 | 14.05 | 0.01 | 2.001 | 0.82 | 0.23 | 2.6 | 97.3 | 0.1 | -0.81 | 0.72 | 0.80 | 4.42 | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.31 | 0.00 | 1.976 | 4.57 | 2.53 | 2.7 | 97.3 | 0.0 | 1.69 | 0.53 | 0.80 | 0.85 | 3.61 | 12222 | 1519 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6U8R | 20690 | 2024-03-21 | 2019-09-05 | 3.91 | 3.97 | 3.83 | 3.9 | 0.019 | 1.85 | 0.0 | 0.08 | 17.00 | 0.01 | 2.188 | 10.11 | 3.21 | 8.7 | 91.0 | 0.3 | -4.40 | 0.61 | 0.81 | 2.14 | 4.0 | 0.003 | 0.86 | 0.0 | 0.05 | 16.95 | 0.00 | 2.096 | 19.89 | 5.81 | 7.6 | 92.4 | 0.0 | -2.09 | 1.23 | 0.61 | 0.80 | 1.02 | 31528 | 4016 | 24 | 0 | 32 | 0 | 0 | logfile |
✔ | 7JHH | 22337 | 2024-03-16 | 2020-07-20 | 3.92 | 4.11 | — | 3.9 | 0.003 | 0.77 | 0.0 | 0.05 | 9.11 | 0.01 | 1.328 | 5.05 | 0.00 | 3.0 | 97.0 | 0.0 | -3.32 | 0.85 | 0.75 | 1.51 | 3.9 | 0.005 | 1.05 | 2.0 | 0.05 | 14.09 | 0.00 | 1.585 | 19.16 | 1.91 | 3.4 | 96.6 | 0.0 | -0.61 | 1.81 | 0.87 | 0.80 | 1.69 | 13418 | 1698 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 7MH1 | 23833 | 2024-03-23 | 2021-04-14 | 2.8 | 2.84 | — | 2.9 | 0.012 | 2.03 | 7.0 | 0.11 | 16.82 | 0.02 | 2.037 | 1.79 | 1.44 | 4.3 | 95.7 | 0.0 | -1.16 | 0.61 | 0.77 | 4.82 | 2.9 | 0.003 | 0.62 | 0.0 | 0.04 | 17.16 | 0.00 | 1.915 | 5.71 | 2.53 | 3.5 | 96.5 | 0.0 | 0.84 | 0.82 | 0.61 | 0.79 | 3.91 | 35636 | 2228 | 8 | 0 | 16 | 0 | 17800 | logfile |
✔ | 6WB9 | 21587 | 2024-03-16 | 2020-03-26 | 3.0 | 3.13 | — | 3.1 | 0.006 | 0.83 | 0.0 | 0.05 | 13.62 | 0.01 | 1.983 | 10.26 | 0.87 | 7.7 | 92.3 | 0.0 | -3.47 | 0.66 | 0.78 | 3.45 | 3.1 | 0.004 | 0.84 | 0.0 | 0.04 | 16.16 | 0.00 | 2.092 | 11.85 | 2.86 | 7.7 | 92.3 | 0.0 | -0.10 | 1.17 | 0.67 | 0.81 | 3.13 | 14507 | 1771 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 5VoT | 8721 | 2024-03-17 | 2017-05-03 | 4.9 | 4.98 | — | 4.9 | 0.004 | 0.67 | 0.0 | 0.04 | 7.57 | 0.00 | 2.126 | 11.91 | 0.00 | 8.5 | 91.5 | 0.0 | -4.03 | 0.63 | 0.71 | — | 4.9 | 0.003 | 0.70 | 0.0 | 0.04 | 10.85 | 0.00 | 2.167 | 13.62 | 0.00 | 5.4 | 94.6 | 0.0 | 0.29 | 0.85 | 0.65 | 0.80 | — | 16463 | 2322 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W0D | 32239 | 2024-03-18 | 2021-11-18 | 4.18 | 4.33 | — | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 16.44 | 0.00 | 2.067 | 15.76 | 0.05 | 5.0 | 95.0 | 0.0 | -0.30 | 0.91 | 0.80 | — | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 16.44 | 0.00 | 1.952 | 16.94 | 0.05 | 5.7 | 94.3 | 0.0 | -0.30 | 0.38 | 0.91 | 0.81 | — | 20322 | 2233 | 8 | 104 | 4 | 0 | 0 | logfile |
✔ | 8G6Q | 29778 | 2024-03-15 | 2023-02-15 | 3.41 | 3.90 | 3.43 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 27.96 | 0.00 | 2.164 | 9.72 | 0.14 | 3.2 | 96.8 | 0.0 | 2.17 | 0.86 | 0.83 | 0.81 | 3.6 | 0.004 | 0.59 | 0.0 | 0.03 | 27.89 | 0.00 | 2.177 | 10.34 | 2.46 | 4.0 | 96.0 | 0.0 | 2.10 | 0.34 | 0.88 | 0.85 | 0.98 | 12485 | 825 | 11 | 290 | 0 | 0 | 0 | logfile |