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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7SDE | 23517 | 2023-04-20 | 2021-09-29 | 3.2 | 3.37 | — | 3.3 | 0.004 | 0.92 | 1.0 | 0.06 | 17.03 | 0.00 | 2.201 | 25.84 | 8.60 | 10.6 | 89.1 | 0.3 | -4.65 | 0.74 | 0.77 | 2.50 | 3.3 | 0.005 | 0.76 | 0.0 | 0.04 | 17.24 | 0.00 | 2.155 | 10.58 | 0.99 | 7.2 | 92.8 | 0.0 | -0.53 | 0.58 | 0.75 | 0.80 | 2.42 | 5734 | 726 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GZ3 | 34389 | 2023-04-20 | 2022-09-24 | 3.3 | 3.13 | — | 3.1 | 0.012 | 1.45 | 3.0 | 0.10 | 13.72 | 0.01 | 2.142 | 5.81 | 1.74 | 1.8 | 98.2 | 0.0 | -0.20 | 0.63 | 0.77 | 2.77 | 3.1 | 0.004 | 0.65 | 0.0 | 0.04 | 14.14 | 0.00 | 2.148 | 6.33 | 0.16 | 1.4 | 98.6 | 0.0 | 0.81 | 1.19 | 0.71 | 0.83 | 3.15 | 8542 | 789 | 7 | 0 | 434 | 1 | 0 | logfile |
✔ | 6VV5 | 21391 | 2023-04-28 | 2020-02-17 | 3.5 | 3.62 | 3.61 | 3.6 | 0.017 | 1.68 | 0.0 | 0.09 | 11.25 | 0.03 | 2.262 | 4.99 | 1.26 | 1.6 | 98.3 | 0.1 | 0.87 | 0.74 | 0.84 | 3.28 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.73 | 0.00 | 2.213 | 6.08 | 0.03 | 3.3 | 96.7 | 0.0 | 0.29 | 1.36 | 0.74 | 0.84 | 2.77 | 26838 | 3291 | 36 | 0 | 102 | 0 | 0 | logfile |
✔ | 8H1T | 34431 | 2023-04-24 | 2022-10-04 | 3.0 | 3.40 | 1.70 | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 24.67 | 0.00 | 1.336 | 10.82 | 0.00 | 2.2 | 97.8 | 0.0 | 2.26 | 0.72 | 0.67 | 1.40 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 26.64 | 0.00 | 2.181 | 11.69 | 2.94 | 3.4 | 96.6 | 0.0 | 1.61 | 0.68 | 0.76 | 0.74 | 1.42 | 17365 | 1323 | 14 | 334 | 0 | 0 | 0 | logfile |
✔ | 6MRT | 9212 | 2023-04-19 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.49 | 0.0 | 0.03 | 15.38 | 0.00 | 2.211 | 3.09 | 1.33 | 0.6 | 99.4 | 0.0 | 5.41 | 3.08 | 0.73 | 0.87 | 2.47 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RHG | 24460 | 2023-04-23 | 2021-07-17 | 2.88 | 2.68 | — | 2.7 | 0.003 | 0.57 | 0.0 | 0.04 | 15.36 | 0.00 | 2.196 | 5.80 | 0.00 | 1.7 | 98.3 | 0.0 | 0.74 | 0.69 | 0.87 | 3.86 | 2.8 | 0.003 | 0.49 | 0.0 | 0.04 | 17.08 | 0.00 | 2.130 | 7.79 | 0.93 | 1.5 | 98.5 | 0.0 | 2.09 | 0.33 | 0.69 | 0.89 | 3.75 | 14753 | 1790 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7o12 | 12687 | 2023-04-22 | 2021-03-28 | 3.7 | 4.45 | — | 3.9 | 0.012 | 1.29 | 0.0 | 0.07 | 14.58 | 0.01 | 1.734 | 8.32 | 0.82 | 5.6 | 94.4 | 0.0 | -5.32 | 0.82 | 0.84 | 1.75 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 15.56 | 0.00 | 1.971 | 14.64 | 0.16 | 4.8 | 95.2 | 0.0 | -0.17 | 2.11 | 0.82 | 0.84 | 1.31 | 11691 | 1511 | 8 | 0 | 5 | 1 | 0 | logfile |
✔ | 7UHF | 26513 | 2023-04-25 | 2022-03-26 | 3.1 | 3.21 | — | 3.2 | 0.004 | 0.70 | 0.0 | 0.05 | 15.41 | 0.00 | 2.053 | 10.13 | 2.31 | 5.5 | 94.4 | 0.1 | -1.07 | 0.55 | 0.79 | 2.79 | 3.2 | 0.004 | 0.64 | 0.0 | 0.04 | 16.40 | 0.00 | 2.143 | 7.48 | 0.50 | 5.5 | 94.5 | 0.0 | -0.32 | 0.42 | 0.54 | 0.82 | 2.74 | 20379 | 2502 | 10 | 0 | 21 | 0 | 0 | logfile |
✔ | 7MSX | 23971 | 2023-04-20 | 2021-05-12 | 3.15 | 3.24 | 3.04 | 3.2 | 0.008 | 0.62 | 0.0 | 0.05 | 10.30 | 0.00 | 2.385 | 0.81 | 0.00 | 1.9 | 98.1 | 0.0 | 0.06 | 0.77 | 0.85 | 3.76 | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 14.93 | 0.00 | 2.204 | 4.88 | 0.25 | 1.9 | 98.1 | 0.0 | 1.12 | 1.12 | 0.78 | 0.88 | 3.52 | 3706 | 473 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 7RD6 | 24413 | 2023-04-20 | 2021-07-09 | 3.25 | 3.44 | — | 3.4 | 0.004 | 0.79 | 0.0 | 0.05 | 14.65 | 0.00 | 2.183 | 9.73 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.56 | 0.70 | 2.23 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 16.29 | 0.00 | 2.135 | 14.09 | 0.12 | 6.0 | 94.0 | 0.0 | -1.38 | 0.42 | 0.57 | 0.73 | 2.17 | 7396 | 929 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7F0L | 31400 | 2023-04-26 | 2021-06-05 | 2.94 | 2.47 | — | 3.0 | 0.019 | 1.90 | 0.0 | 0.06 | 17.83 | 0.02 | 1.988 | 10.82 | 1.93 | 2.9 | 97.1 | 0.0 | 0.03 | 0.65 | 0.82 | 4.03 | 3.0 | 0.003 | 0.68 | 0.0 | 0.04 | 18.05 | 0.00 | 1.995 | 9.78 | 1.98 | 2.8 | 97.2 | 0.0 | 2.51 | 0.40 | 0.63 | 0.83 | 3.45 | 23458 | 2277 | 66 | 0 | 112 | 0 | 0 | logfile |
✔ | 8ABY | 15327 | 2023-04-27 | 2022-07-05 | 3.7 | 4.01 | 3.81 | 4.0 | 0.004 | 0.62 | 0.0 | 0.04 | 14.65 | 0.00 | 2.131 | 10.11 | 0.00 | 4.0 | 96.0 | 0.0 | -0.33 | 0.80 | 0.82 | 1.54 | 4.0 | 0.005 | 0.65 | 0.0 | 0.04 | 16.22 | 0.00 | 2.122 | 10.44 | 0.19 | 4.4 | 95.6 | 0.0 | 0.24 | 0.45 | 0.80 | 0.85 | 1.30 | 25719 | 3166 | 9 | 46 | 3 | 0 | 0 | logfile |
✔ | 7SQ8 | 25379 | 2023-04-23 | 2021-11-04 | 2.598 | 2.10 | — | 2.5 | 0.004 | 0.55 | 0.0 | 0.04 | 13.37 | 0.00 | 2.199 | 3.68 | 0.00 | 3.3 | 96.7 | 0.0 | 1.93 | 0.64 | 0.86 | 4.26 | 2.5 | 0.003 | 0.52 | 0.0 | 0.04 | 15.53 | 0.00 | 2.225 | 4.23 | 1.39 | 2.7 | 97.3 | 0.0 | 2.27 | 0.38 | 0.64 | 0.88 | 4.02 | 15117 | 1852 | 13 | 0 | 9 | 8 | 0 | logfile |
✔ | 7M6S | 23706 | 2023-04-23 | 2021-03-26 | 3.61 | 4.62 | 3.61 | 3.9 | 0.008 | 1.49 | 0.0 | 0.09 | 12.34 | 0.01 | 2.269 | 6.38 | 0.00 | 3.1 | 96.9 | 0.0 | 1.92 | 0.87 | 0.78 | 1.08 | 3.9 | 0.003 | 0.84 | 0.0 | 0.05 | 15.03 | 0.00 | 2.190 | 15.35 | 0.25 | 3.5 | 96.5 | 0.0 | 0.25 | 1.42 | 0.89 | 0.83 | 0.85 | 14625 | 1790 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 7oAN | 12777 | 2023-04-28 | 2021-04-19 | 3.0 | 3.72 | — | 3.3 | 0.011 | 1.13 | 0.0 | 0.08 | 13.54 | 0.00 | 2.066 | 8.15 | 1.35 | 4.0 | 95.8 | 0.2 | -0.73 | 0.88 | 0.87 | 2.70 | 3.3 | 0.004 | 0.61 | 0.0 | 0.05 | 14.62 | 0.00 | 2.147 | 8.40 | 1.18 | 4.3 | 95.7 | 0.0 | 0.39 | 0.59 | 0.87 | 0.87 | 2.54 | 28203 | 3510 | 24 | 0 | 66 | 0 | 0 | logfile |
✔ | 7K79 | 22697 | 2023-04-22 | 2020-09-22 | 4.0 | 4.46 | — | 4.1 | 0.009 | 1.81 | 2.0 | 0.08 | 17.45 | 0.01 | 2.197 | 11.21 | 0.13 | 9.6 | 90.4 | 0.0 | -3.78 | 0.79 | 0.74 | — | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 17.69 | 0.00 | 2.120 | 16.36 | 0.34 | 6.6 | 93.4 | 0.0 | -0.99 | 2.19 | 0.79 | 0.73 | — | 13272 | 1601 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DXD | 30905 | 2023-04-26 | 2021-01-18 | 3.9 | 4.20 | 3.85 | 3.9 | 0.004 | 0.63 | 0.0 | 0.04 | 13.46 | 0.00 | 2.260 | 7.65 | 1.25 | 2.8 | 97.2 | 0.0 | -0.82 | 0.74 | 0.82 | 1.28 | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 15.17 | 0.00 | 2.207 | 8.08 | 0.04 | 2.4 | 97.6 | 0.0 | 2.81 | 1.31 | 0.74 | 0.84 | 0.96 | 23628 | 2928 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7TYY | 26199 | 2023-04-21 | 2022-02-14 | 3.0 | 2.60 | 2.90 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 13.32 | 0.00 | 2.174 | 7.31 | 2.03 | 1.8 | 98.2 | 0.0 | -3.39 | 0.59 | 0.78 | 3.16 | 2.9 | 0.004 | 0.61 | 0.0 | 0.04 | 16.38 | 0.00 | 2.145 | 11.96 | 2.44 | 3.1 | 96.9 | 0.0 | 0.00 | 1.02 | 0.62 | 0.82 | 2.98 | 9802 | 1250 | 11 | 0 | 9 | 7 | 0 | logfile |
✔ | 7PY5 | 13713 | 2023-04-29 | 2021-10-09 | 3.9 | 4.34 | — | 4.2 | 0.002 | 0.62 | 0.0 | 0.04 | 14.71 | 0.00 | 2.071 | 8.67 | 0.00 | 5.4 | 94.6 | 0.0 | -1.41 | 0.80 | 0.79 | 1.13 | 4.2 | 0.003 | 0.63 | 0.0 | 0.04 | 16.58 | 0.00 | 1.942 | 11.47 | 0.21 | 5.5 | 94.5 | 0.0 | -0.54 | 0.47 | 0.78 | 0.79 | 1.14 | 29959 | 3832 | 11 | 67 | 3 | 0 | 0 | logfile |
✔ | 7o10 | 12685 | 2023-04-22 | 2021-03-28 | 3.6 | 4.08 | — | 3.8 | 0.006 | 1.09 | 2.0 | 0.06 | 14.56 | 0.01 | 1.946 | 4.80 | 1.06 | 7.0 | 93.0 | 0.0 | -5.64 | 0.78 | 0.82 | 1.71 | 3.8 | 0.005 | 0.75 | 0.0 | 0.05 | 15.78 | 0.00 | 1.873 | 15.85 | 0.16 | 7.4 | 92.6 | 0.0 | -0.52 | 1.56 | 0.79 | 0.83 | 1.26 | 11651 | 1514 | 6 | 0 | 1 | 1 | 0 | logfile |