Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MJP	23881	2023-07-07	2021-04-20	4.2	4.40	—	4.3	0.008	1.11	0.0	0.07	6.51	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.60	0.0	0.05	4.85	0.00	2.276	0.87	0.00	6.8	93.2	0.0	-0.45	0.44	0.56	0.69	—	14163	2818	10	0	8	0	0	logfile
✔	7PEY	13361	2023-07-07	2021-08-11	4.5	5.20	—	3.8	0.006	0.90	0.0	0.05	29.92	0.01	2.177	7.49	0.00	1.6	98.4	0.0	-0.09	0.89	0.84	—	3.8	0.005	0.68	0.0	0.04	29.92	0.00	2.127	22.29	0.00	3.1	96.9	0.0	1.41	1.31	0.89	0.85	—	13099	768	10	342	0	0	0	logfile
✔	7Z2G	14465	2023-07-04	2022-02-26	3.65	3.52	3.63	3.6	0.007	0.73	1.0	0.05	17.04	0.02	2.324	8.07	0.24	3.9	96.1	0.0	-0.62	0.63	0.76	2.35	3.6	0.003	0.69	0.0	0.04	18.39	0.01	2.142	9.10	0.12	3.7	96.3	0.0	-0.35	0.39	0.63	0.76	2.15	8406	943	4	36	1	0	0	logfile
✔	7JZ6	22530	2023-07-10	2020-09-01	2.53	2.20	—	2.2	0.009	1.04	8.0	0.11	19.13	0.01	1.219	8.05	11.17	7.8	92.2	0.0	-3.03	0.58	0.65	2.78	2.2	0.003	0.62	0.0	0.04	19.08	0.00	2.177	5.78	5.84	2.8	97.2	0.0	0.25	1.59	0.57	0.66	2.47	20842	2646	12	0	4	18	0	logfile
✔	7LD3	23280	2023-07-04	2021-01-12	3.2	3.49	3.04	3.5	0.006	1.02	0.0	0.06	12.70	0.01	2.277	3.63	0.13	3.3	96.7	0.0	-1.50	0.59	0.82	3.41	3.4	0.003	0.56	0.0	0.04	14.47	0.00	2.172	8.61	0.00	2.2	97.8	0.0	0.57	1.26	0.68	0.87	2.78	7016	888	5	0	2	1	0	logfile
✔	6MHW	9120	2023-07-16	2018-09-18	4.0	4.10	3.97	4.0	0.004	0.62	0.0	0.13	7.02	0.00	1.933	7.04	0.00	3.4	96.6	0.0	-2.09	0.79	0.77	—	4.0	0.003	0.65	0.0	0.12	12.87	0.00	1.907	9.76	0.06	4.7	95.3	0.0	1.74	1.49	0.79	0.79	—	34414	2452	4	0	0	0	16514	logfile
✔	6PA7	20281	2023-07-10	2019-06-11	2.94	3.31	—	3.1	0.005	0.80	0.0	0.05	23.57	0.01	2.304	3.72	0.00	3.1	96.9	0.0	-2.99	0.80	0.77	2.57	3.1	0.003	0.65	0.0	0.04	25.89	0.00	2.170	12.57	2.87	3.6	96.4	0.0	0.76	0.85	0.82	0.83	2.55	21019	1770	19	332	3	0	0	logfile
✔	6ZGJ	11208	2023-07-06	2020-06-18	3.4	3.39	3.34	3.5	0.005	0.61	0.0	0.04	12.36	0.00	2.192	9.66	0.00	6.3	93.7	0.0	-1.35	0.69	0.79	3.10	3.5	0.003	0.58	0.0	0.04	14.28	0.00	2.228	6.59	0.18	5.7	94.3	0.0	-0.56	0.42	0.71	0.85	2.51	11555	1540	5	0	0	0	0	logfile
✔	7D43	30568	2023-07-14	2020-09-22	4.3	4.40	—	4.3	0.006	0.99	0.0	0.05	14.62	0.01	2.018	28.49	0.31	18.3	81.6	0.1	-6.11	0.83	0.79	—	4.3	0.005	0.79	0.0	0.05	13.78	0.00	2.083	20.44	0.00	12.6	87.3	0.0	-2.75	1.57	0.83	0.78	—	31009	4347	14	0	0	0	0	logfile
✔	7S89	24891	2023-07-10	2021-09-17	2.54	2.40	—	2.4	0.012	1.28	4.0	0.06	16.92	0.01	2.222	5.87	1.74	2.5	97.5	0.0	-3.47	0.79	0.82	4.59	2.4	0.003	0.68	0.0	0.04	17.50	0.00	2.226	10.28	1.60	3.5	96.5	0.0	1.69	0.63	0.79	0.86	3.95	20425	2376	12	0	45	88	0	logfile
✔	7PDD	13334	2023-07-03	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	20.92	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.003	0.79	0.0	0.05	14.04	0.00	2.224	17.90	0.00	5.3	94.7	0.0	-1.20	0.90	0.78	0.72	—	4516	577	2	0	0	0	0	logfile
✔	6TBU	10452	2023-07-07	2019-11-04	3.16	3.52	—	3.4	0.012	1.51	0.0	0.18	14.96	0.00	1.526	5.99	0.00	5.0	94.9	0.1	-1.99	0.72	0.80	3.61	3.4	0.003	0.71	0.0	0.15	15.76	0.00	2.036	11.69	0.54	4.5	95.5	0.0	1.46	0.82	0.70	0.84	2.89	13733	842	3	0	12	0	6645	logfile
✔	7MiP	23859	2023-07-16	2021-04-17	2.4	2.51	—	2.5	0.015	2.04	8.0	0.13	14.38	0.01	1.950	2.53	1.04	3.4	96.4	0.2	-1.24	0.58	0.74	4.56	2.5	0.003	0.59	0.0	0.04	17.13	0.00	1.947	6.06	1.25	1.5	98.5	0.0	0.72	1.36	0.62	0.81	4.11	34800	2164	8	0	12	0	17328	logfile
✔	6ZGD	11202	2023-07-05	2020-06-18	4.1	4.30	3.99	4.2	0.006	0.62	0.0	0.05	10.93	0.01	2.137	10.94	0.61	4.6	95.4	0.0	-1.11	0.74	0.82	—	4.2	0.003	0.62	0.0	0.05	11.91	0.01	2.177	8.26	0.00	2.3	97.7	0.0	-0.73	1.00	0.70	0.81	—	10175	1440	5	0	0	0	0	logfile
✔	7R8A	24313	2023-07-05	2021-06-26	2.9	3.05	—	3.0	0.003	0.57	0.0	0.04	13.75	0.00	2.305	6.32	3.39	4.6	95.3	0.1	-1.64	0.66	0.81	2.32	3.0	0.003	0.59	0.0	0.04	16.03	0.00	2.216	5.85	3.21	5.1	94.9	0.0	1.12	1.04	0.75	0.91	2.98	10530	1332	5	0	1	0	0	logfile
✔	7P15	13156	2023-07-04	2021-07-01	3.58	3.46	3.56	3.5	0.007	0.93	2.0	0.07	16.34	0.02	2.182	8.93	0.23	4.0	96.0	0.0	-1.15	0.62	0.71	2.09	3.5	0.003	0.72	0.0	0.04	17.92	0.01	2.167	10.95	0.12	3.0	97.0	0.0	-0.30	0.41	0.62	0.71	2.24	8587	969	3	34	1	0	0	logfile
✔	7oSL	13054	2023-07-19	2021-06-09	3.1	2.94	3.08	3.1	0.010	1.26	0.0	0.07	12.14	0.01	2.374	0.44	0.00	1.3	98.7	0.0	-2.09	0.61	0.67	2.20	3.1	0.002	0.54	0.0	0.04	14.65	0.00	2.202	2.80	0.04	2.1	97.9	0.0	1.08	0.74	0.73	0.80	1.82	47885	2935	9	0	0	0	24225	logfile
✔	6RLA	4917	2023-07-18	2019-05-01	3.9	4.09	3.89	3.9	0.007	1.16	0.0	0.06	11.38	0.01	2.116	3.84	0.35	7.9	92.1	0.0	-3.78	0.84	0.77	1.21	3.9	0.003	0.67	0.0	0.04	14.63	0.00	2.049	8.57	0.31	4.6	95.4	0.0	0.22	0.88	0.85	0.78	0.92	43034	5500	4	0	10	0	0	logfile
✔	8HiL	34820	2023-07-11	2022-11-20	3.57	3.29	3.64	3.2	0.007	1.12	0.0	0.06	11.20	0.01	2.105	6.12	1.12	13.3	86.4	0.3	-4.62	0.82	0.79	2.26	3.1	0.003	0.67	0.0	0.04	14.51	0.00	1.728	10.27	0.04	11.7	88.3	0.0	-1.91	1.26	0.83	0.79	1.59	23134	2914	15	0	7	0	0	logfile
✔	7K3B	22655	2023-07-09	2020-09-10	3.4	3.49	—	3.4	0.008	0.78	0.0	0.05	12.85	0.00	2.155	8.62	0.00	4.8	95.2	0.0	-0.19	0.82	0.85	3.08	3.4	0.003	0.66	0.0	0.05	15.16	0.00	2.149	10.29	0.34	4.4	95.6	0.0	-0.16	0.60	0.84	0.88	2.81	19038	2394	24	0	51	0	0	logfile

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