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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7MJP | 23881 | 2023-07-07 | 2021-04-20 | 4.2 | 4.40 | — | 4.3 | 0.008 | 1.11 | 0.0 | 0.07 | 6.51 | 0.01 | 1.477 | 2.76 | 0.00 | 9.1 | 90.9 | 0.0 | -1.16 | 0.51 | 0.65 | — | 4.4 | 0.002 | 0.60 | 0.0 | 0.05 | 4.85 | 0.00 | 2.276 | 0.87 | 0.00 | 6.8 | 93.2 | 0.0 | -0.45 | 0.44 | 0.56 | 0.69 | — | 14163 | 2818 | 10 | 0 | 8 | 0 | 0 | logfile |
✔ | 7PEY | 13361 | 2023-07-07 | 2021-08-11 | 4.5 | 5.20 | — | 3.8 | 0.006 | 0.90 | 0.0 | 0.05 | 29.92 | 0.01 | 2.177 | 7.49 | 0.00 | 1.6 | 98.4 | 0.0 | -0.09 | 0.89 | 0.84 | — | 3.8 | 0.005 | 0.68 | 0.0 | 0.04 | 29.92 | 0.00 | 2.127 | 22.29 | 0.00 | 3.1 | 96.9 | 0.0 | 1.41 | 1.31 | 0.89 | 0.85 | — | 13099 | 768 | 10 | 342 | 0 | 0 | 0 | logfile |
✔ | 7Z2G | 14465 | 2023-07-04 | 2022-02-26 | 3.65 | 3.52 | 3.63 | 3.6 | 0.007 | 0.73 | 1.0 | 0.05 | 17.04 | 0.02 | 2.324 | 8.07 | 0.24 | 3.9 | 96.1 | 0.0 | -0.62 | 0.63 | 0.76 | 2.35 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 18.39 | 0.01 | 2.142 | 9.10 | 0.12 | 3.7 | 96.3 | 0.0 | -0.35 | 0.39 | 0.63 | 0.76 | 2.15 | 8406 | 943 | 4 | 36 | 1 | 0 | 0 | logfile |
✔ | 7JZ6 | 22530 | 2023-07-10 | 2020-09-01 | 2.53 | 2.20 | — | 2.2 | 0.009 | 1.04 | 8.0 | 0.11 | 19.13 | 0.01 | 1.219 | 8.05 | 11.17 | 7.8 | 92.2 | 0.0 | -3.03 | 0.58 | 0.65 | 2.78 | 2.2 | 0.003 | 0.62 | 0.0 | 0.04 | 19.08 | 0.00 | 2.177 | 5.78 | 5.84 | 2.8 | 97.2 | 0.0 | 0.25 | 1.59 | 0.57 | 0.66 | 2.47 | 20842 | 2646 | 12 | 0 | 4 | 18 | 0 | logfile |
✔ | 7LD3 | 23280 | 2023-07-04 | 2021-01-12 | 3.2 | 3.49 | 3.04 | 3.5 | 0.006 | 1.02 | 0.0 | 0.06 | 12.70 | 0.01 | 2.277 | 3.63 | 0.13 | 3.3 | 96.7 | 0.0 | -1.50 | 0.59 | 0.82 | 3.41 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 14.47 | 0.00 | 2.172 | 8.61 | 0.00 | 2.2 | 97.8 | 0.0 | 0.57 | 1.26 | 0.68 | 0.87 | 2.78 | 7016 | 888 | 5 | 0 | 2 | 1 | 0 | logfile |
✔ | 6MHW | 9120 | 2023-07-16 | 2018-09-18 | 4.0 | 4.10 | 3.97 | 4.0 | 0.004 | 0.62 | 0.0 | 0.13 | 7.02 | 0.00 | 1.933 | 7.04 | 0.00 | 3.4 | 96.6 | 0.0 | -2.09 | 0.79 | 0.77 | — | 4.0 | 0.003 | 0.65 | 0.0 | 0.12 | 12.87 | 0.00 | 1.907 | 9.76 | 0.06 | 4.7 | 95.3 | 0.0 | 1.74 | 1.49 | 0.79 | 0.79 | — | 34414 | 2452 | 4 | 0 | 0 | 0 | 16514 | logfile |
✔ | 6PA7 | 20281 | 2023-07-10 | 2019-06-11 | 2.94 | 3.31 | — | 3.1 | 0.005 | 0.80 | 0.0 | 0.05 | 23.57 | 0.01 | 2.304 | 3.72 | 0.00 | 3.1 | 96.9 | 0.0 | -2.99 | 0.80 | 0.77 | 2.57 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 25.89 | 0.00 | 2.170 | 12.57 | 2.87 | 3.6 | 96.4 | 0.0 | 0.76 | 0.85 | 0.82 | 0.83 | 2.55 | 21019 | 1770 | 19 | 332 | 3 | 0 | 0 | logfile |
✔ | 6ZGJ | 11208 | 2023-07-06 | 2020-06-18 | 3.4 | 3.39 | 3.34 | 3.5 | 0.005 | 0.61 | 0.0 | 0.04 | 12.36 | 0.00 | 2.192 | 9.66 | 0.00 | 6.3 | 93.7 | 0.0 | -1.35 | 0.69 | 0.79 | 3.10 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 14.28 | 0.00 | 2.228 | 6.59 | 0.18 | 5.7 | 94.3 | 0.0 | -0.56 | 0.42 | 0.71 | 0.85 | 2.51 | 11555 | 1540 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D43 | 30568 | 2023-07-14 | 2020-09-22 | 4.3 | 4.40 | — | 4.3 | 0.006 | 0.99 | 0.0 | 0.05 | 14.62 | 0.01 | 2.018 | 28.49 | 0.31 | 18.3 | 81.6 | 0.1 | -6.11 | 0.83 | 0.79 | — | 4.3 | 0.005 | 0.79 | 0.0 | 0.05 | 13.78 | 0.00 | 2.083 | 20.44 | 0.00 | 12.6 | 87.3 | 0.0 | -2.75 | 1.57 | 0.83 | 0.78 | — | 31009 | 4347 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S89 | 24891 | 2023-07-10 | 2021-09-17 | 2.54 | 2.40 | — | 2.4 | 0.012 | 1.28 | 4.0 | 0.06 | 16.92 | 0.01 | 2.222 | 5.87 | 1.74 | 2.5 | 97.5 | 0.0 | -3.47 | 0.79 | 0.82 | 4.59 | 2.4 | 0.003 | 0.68 | 0.0 | 0.04 | 17.50 | 0.00 | 2.226 | 10.28 | 1.60 | 3.5 | 96.5 | 0.0 | 1.69 | 0.63 | 0.79 | 0.86 | 3.95 | 20425 | 2376 | 12 | 0 | 45 | 88 | 0 | logfile |
✔ | 7PDD | 13334 | 2023-07-03 | 2021-08-05 | 4.2 | 4.47 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.04 | 14.38 | 0.00 | 2.092 | 20.92 | 0.00 | 7.1 | 92.9 | 0.0 | -4.11 | 0.79 | 0.75 | — | 4.3 | 0.003 | 0.79 | 0.0 | 0.05 | 14.04 | 0.00 | 2.224 | 17.90 | 0.00 | 5.3 | 94.7 | 0.0 | -1.20 | 0.90 | 0.78 | 0.72 | — | 4516 | 577 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TBU | 10452 | 2023-07-07 | 2019-11-04 | 3.16 | 3.52 | — | 3.4 | 0.012 | 1.51 | 0.0 | 0.18 | 14.96 | 0.00 | 1.526 | 5.99 | 0.00 | 5.0 | 94.9 | 0.1 | -1.99 | 0.72 | 0.80 | 3.61 | 3.4 | 0.003 | 0.71 | 0.0 | 0.15 | 15.76 | 0.00 | 2.036 | 11.69 | 0.54 | 4.5 | 95.5 | 0.0 | 1.46 | 0.82 | 0.70 | 0.84 | 2.89 | 13733 | 842 | 3 | 0 | 12 | 0 | 6645 | logfile |
✔ | 7MiP | 23859 | 2023-07-16 | 2021-04-17 | 2.4 | 2.51 | — | 2.5 | 0.015 | 2.04 | 8.0 | 0.13 | 14.38 | 0.01 | 1.950 | 2.53 | 1.04 | 3.4 | 96.4 | 0.2 | -1.24 | 0.58 | 0.74 | 4.56 | 2.5 | 0.003 | 0.59 | 0.0 | 0.04 | 17.13 | 0.00 | 1.947 | 6.06 | 1.25 | 1.5 | 98.5 | 0.0 | 0.72 | 1.36 | 0.62 | 0.81 | 4.11 | 34800 | 2164 | 8 | 0 | 12 | 0 | 17328 | logfile |
✔ | 6ZGD | 11202 | 2023-07-05 | 2020-06-18 | 4.1 | 4.30 | 3.99 | 4.2 | 0.006 | 0.62 | 0.0 | 0.05 | 10.93 | 0.01 | 2.137 | 10.94 | 0.61 | 4.6 | 95.4 | 0.0 | -1.11 | 0.74 | 0.82 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.05 | 11.91 | 0.01 | 2.177 | 8.26 | 0.00 | 2.3 | 97.7 | 0.0 | -0.73 | 1.00 | 0.70 | 0.81 | — | 10175 | 1440 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R8A | 24313 | 2023-07-05 | 2021-06-26 | 2.9 | 3.05 | — | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 13.75 | 0.00 | 2.305 | 6.32 | 3.39 | 4.6 | 95.3 | 0.1 | -1.64 | 0.66 | 0.81 | 2.32 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 16.03 | 0.00 | 2.216 | 5.85 | 3.21 | 5.1 | 94.9 | 0.0 | 1.12 | 1.04 | 0.75 | 0.91 | 2.98 | 10530 | 1332 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7P15 | 13156 | 2023-07-04 | 2021-07-01 | 3.58 | 3.46 | 3.56 | 3.5 | 0.007 | 0.93 | 2.0 | 0.07 | 16.34 | 0.02 | 2.182 | 8.93 | 0.23 | 4.0 | 96.0 | 0.0 | -1.15 | 0.62 | 0.71 | 2.09 | 3.5 | 0.003 | 0.72 | 0.0 | 0.04 | 17.92 | 0.01 | 2.167 | 10.95 | 0.12 | 3.0 | 97.0 | 0.0 | -0.30 | 0.41 | 0.62 | 0.71 | 2.24 | 8587 | 969 | 3 | 34 | 1 | 0 | 0 | logfile |
✔ | 7oSL | 13054 | 2023-07-19 | 2021-06-09 | 3.1 | 2.94 | 3.08 | 3.1 | 0.010 | 1.26 | 0.0 | 0.07 | 12.14 | 0.01 | 2.374 | 0.44 | 0.00 | 1.3 | 98.7 | 0.0 | -2.09 | 0.61 | 0.67 | 2.20 | 3.1 | 0.002 | 0.54 | 0.0 | 0.04 | 14.65 | 0.00 | 2.202 | 2.80 | 0.04 | 2.1 | 97.9 | 0.0 | 1.08 | 0.74 | 0.73 | 0.80 | 1.82 | 47885 | 2935 | 9 | 0 | 0 | 0 | 24225 | logfile |
✔ | 6RLA | 4917 | 2023-07-18 | 2019-05-01 | 3.9 | 4.09 | 3.89 | 3.9 | 0.007 | 1.16 | 0.0 | 0.06 | 11.38 | 0.01 | 2.116 | 3.84 | 0.35 | 7.9 | 92.1 | 0.0 | -3.78 | 0.84 | 0.77 | 1.21 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 14.63 | 0.00 | 2.049 | 8.57 | 0.31 | 4.6 | 95.4 | 0.0 | 0.22 | 0.88 | 0.85 | 0.78 | 0.92 | 43034 | 5500 | 4 | 0 | 10 | 0 | 0 | logfile |
✔ | 8HiL | 34820 | 2023-07-11 | 2022-11-20 | 3.57 | 3.29 | 3.64 | 3.2 | 0.007 | 1.12 | 0.0 | 0.06 | 11.20 | 0.01 | 2.105 | 6.12 | 1.12 | 13.3 | 86.4 | 0.3 | -4.62 | 0.82 | 0.79 | 2.26 | 3.1 | 0.003 | 0.67 | 0.0 | 0.04 | 14.51 | 0.00 | 1.728 | 10.27 | 0.04 | 11.7 | 88.3 | 0.0 | -1.91 | 1.26 | 0.83 | 0.79 | 1.59 | 23134 | 2914 | 15 | 0 | 7 | 0 | 0 | logfile |
✔ | 7K3B | 22655 | 2023-07-09 | 2020-09-10 | 3.4 | 3.49 | — | 3.4 | 0.008 | 0.78 | 0.0 | 0.05 | 12.85 | 0.00 | 2.155 | 8.62 | 0.00 | 4.8 | 95.2 | 0.0 | -0.19 | 0.82 | 0.85 | 3.08 | 3.4 | 0.003 | 0.66 | 0.0 | 0.05 | 15.16 | 0.00 | 2.149 | 10.29 | 0.34 | 4.4 | 95.6 | 0.0 | -0.16 | 0.60 | 0.84 | 0.88 | 2.81 | 19038 | 2394 | 24 | 0 | 51 | 0 | 0 | logfile |