Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SDE	23517	2023-04-20	2021-09-29	3.2	3.37	—	3.3	0.004	0.92	1.0	0.06	17.03	0.00	2.201	25.84	8.60	10.6	89.1	0.3	-4.65	0.74	0.77	2.50	3.3	0.005	0.76	0.0	0.04	17.24	0.00	2.155	10.58	0.99	7.2	92.8	0.0	-0.53	0.58	0.75	0.80	2.42	5734	726	2	0	0	0	0	logfile
✔	8GZ3	34389	2023-04-20	2022-09-24	3.3	3.13	—	3.1	0.012	1.45	3.0	0.10	13.72	0.01	2.142	5.81	1.74	1.8	98.2	0.0	-0.20	0.63	0.77	2.77	3.1	0.004	0.65	0.0	0.04	14.14	0.00	2.148	6.33	0.16	1.4	98.6	0.0	0.81	1.19	0.71	0.83	3.15	8542	789	7	0	434	1	0	logfile
✔	6VV5	21391	2023-04-28	2020-02-17	3.5	3.62	3.61	3.6	0.017	1.68	0.0	0.09	11.25	0.03	2.262	4.99	1.26	1.6	98.3	0.1	0.87	0.74	0.84	3.28	3.6	0.003	0.60	0.0	0.04	14.73	0.00	2.213	6.08	0.03	3.3	96.7	0.0	0.29	1.36	0.74	0.84	2.77	26838	3291	36	0	102	0	0	logfile
✔	8H1T	34431	2023-04-24	2022-10-04	3.0	3.40	1.70	3.2	0.003	0.53	0.0	0.04	24.67	0.00	1.336	10.82	0.00	2.2	97.8	0.0	2.26	0.72	0.67	1.40	3.2	0.004	0.65	0.0	0.04	26.64	0.00	2.181	11.69	2.94	3.4	96.6	0.0	1.61	0.68	0.76	0.74	1.42	17365	1323	14	334	0	0	0	logfile
✔	6MRT	9212	2023-04-19	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.38	0.00	2.211	3.09	1.33	0.6	99.4	0.0	5.41	3.08	0.73	0.87	2.47	26868	3420	12	0	0	0	0	logfile
✔	7RHG	24460	2023-04-23	2021-07-17	2.88	2.68	—	2.7	0.003	0.57	0.0	0.04	15.36	0.00	2.196	5.80	0.00	1.7	98.3	0.0	0.74	0.69	0.87	3.86	2.8	0.003	0.49	0.0	0.04	17.08	0.00	2.130	7.79	0.93	1.5	98.5	0.0	2.09	0.33	0.69	0.89	3.75	14753	1790	8	0	4	0	0	logfile
✔	7o12	12687	2023-04-22	2021-03-28	3.7	4.45	—	3.9	0.012	1.29	0.0	0.07	14.58	0.01	1.734	8.32	0.82	5.6	94.4	0.0	-5.32	0.82	0.84	1.75	3.9	0.003	0.66	0.0	0.04	15.56	0.00	1.971	14.64	0.16	4.8	95.2	0.0	-0.17	2.11	0.82	0.84	1.31	11691	1511	8	0	5	1	0	logfile
✔	7UHF	26513	2023-04-25	2022-03-26	3.1	3.21	—	3.2	0.004	0.70	0.0	0.05	15.41	0.00	2.053	10.13	2.31	5.5	94.4	0.1	-1.07	0.55	0.79	2.79	3.2	0.004	0.64	0.0	0.04	16.40	0.00	2.143	7.48	0.50	5.5	94.5	0.0	-0.32	0.42	0.54	0.82	2.74	20379	2502	10	0	21	0	0	logfile
✔	7MSX	23971	2023-04-20	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.81	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.51	0.0	0.04	14.93	0.00	2.204	4.88	0.25	1.9	98.1	0.0	1.12	1.12	0.78	0.88	3.52	3706	473	1	0	3	0	0	logfile
✔	7RD6	24413	2023-04-20	2021-07-09	3.25	3.44	—	3.4	0.004	0.79	0.0	0.05	14.65	0.00	2.183	9.73	0.00	5.3	94.7	0.0	-1.73	0.56	0.70	2.23	3.4	0.003	0.66	0.0	0.04	16.29	0.00	2.135	14.09	0.12	6.0	94.0	0.0	-1.38	0.42	0.57	0.73	2.17	7396	929	1	0	2	0	0	logfile
✔	7F0L	31400	2023-04-26	2021-06-05	2.94	2.47	—	3.0	0.019	1.90	0.0	0.06	17.83	0.02	1.988	10.82	1.93	2.9	97.1	0.0	0.03	0.65	0.82	4.03	3.0	0.003	0.68	0.0	0.04	18.05	0.00	1.995	9.78	1.98	2.8	97.2	0.0	2.51	0.40	0.63	0.83	3.45	23458	2277	66	0	112	0	0	logfile
✔	8ABY	15327	2023-04-27	2022-07-05	3.7	4.01	3.81	4.0	0.004	0.62	0.0	0.04	14.65	0.00	2.131	10.11	0.00	4.0	96.0	0.0	-0.33	0.80	0.82	1.54	4.0	0.005	0.65	0.0	0.04	16.22	0.00	2.122	10.44	0.19	4.4	95.6	0.0	0.24	0.45	0.80	0.85	1.30	25719	3166	9	46	3	0	0	logfile
✔	7SQ8	25379	2023-04-23	2021-11-04	2.598	2.10	—	2.5	0.004	0.55	0.0	0.04	13.37	0.00	2.199	3.68	0.00	3.3	96.7	0.0	1.93	0.64	0.86	4.26	2.5	0.003	0.52	0.0	0.04	15.53	0.00	2.225	4.23	1.39	2.7	97.3	0.0	2.27	0.38	0.64	0.88	4.02	15117	1852	13	0	9	8	0	logfile
✔	7M6S	23706	2023-04-23	2021-03-26	3.61	4.62	3.61	3.9	0.008	1.49	0.0	0.09	12.34	0.01	2.269	6.38	0.00	3.1	96.9	0.0	1.92	0.87	0.78	1.08	3.9	0.003	0.84	0.0	0.05	15.03	0.00	2.190	15.35	0.25	3.5	96.5	0.0	0.25	1.42	0.89	0.83	0.85	14625	1790	10	0	5	0	0	logfile
✔	7oAN	12777	2023-04-28	2021-04-19	3.0	3.72	—	3.3	0.011	1.13	0.0	0.08	13.54	0.00	2.066	8.15	1.35	4.0	95.8	0.2	-0.73	0.88	0.87	2.70	3.3	0.004	0.61	0.0	0.05	14.62	0.00	2.147	8.40	1.18	4.3	95.7	0.0	0.39	0.59	0.87	0.87	2.54	28203	3510	24	0	66	0	0	logfile
✔	7K79	22697	2023-04-22	2020-09-22	4.0	4.46	—	4.1	0.009	1.81	2.0	0.08	17.45	0.01	2.197	11.21	0.13	9.6	90.4	0.0	-3.78	0.79	0.74	—	4.1	0.003	0.72	0.0	0.04	17.69	0.00	2.120	16.36	0.34	6.6	93.4	0.0	-0.99	2.19	0.79	0.73	—	13272	1601	4	0	0	0	0	logfile
✔	7DXD	30905	2023-04-26	2021-01-18	3.9	4.20	3.85	3.9	0.004	0.63	0.0	0.04	13.46	0.00	2.260	7.65	1.25	2.8	97.2	0.0	-0.82	0.74	0.82	1.28	3.9	0.003	0.58	0.0	0.04	15.17	0.00	2.207	8.08	0.04	2.4	97.6	0.0	2.81	1.31	0.74	0.84	0.96	23628	2928	8	0	12	0	0	logfile
✔	7TYY	26199	2023-04-21	2022-02-14	3.0	2.60	2.90	2.9	0.003	0.57	0.0	0.04	13.32	0.00	2.174	7.31	2.03	1.8	98.2	0.0	-3.39	0.59	0.78	3.16	2.9	0.004	0.61	0.0	0.04	16.38	0.00	2.145	11.96	2.44	3.1	96.9	0.0	0.00	1.02	0.62	0.82	2.98	9802	1250	11	0	9	7	0	logfile
✔	7PY5	13713	2023-04-29	2021-10-09	3.9	4.34	—	4.2	0.002	0.62	0.0	0.04	14.71	0.00	2.071	8.67	0.00	5.4	94.6	0.0	-1.41	0.80	0.79	1.13	4.2	0.003	0.63	0.0	0.04	16.58	0.00	1.942	11.47	0.21	5.5	94.5	0.0	-0.54	0.47	0.78	0.79	1.14	29959	3832	11	67	3	0	0	logfile
✔	7o10	12685	2023-04-22	2021-03-28	3.6	4.08	—	3.8	0.006	1.09	2.0	0.06	14.56	0.01	1.946	4.80	1.06	7.0	93.0	0.0	-5.64	0.78	0.82	1.71	3.8	0.005	0.75	0.0	0.05	15.78	0.00	1.873	15.85	0.16	7.4	92.6	0.0	-0.52	1.56	0.79	0.83	1.26	11651	1514	6	0	1	1	0	logfile

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