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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WGE | 21663 | 2022-07-04 | 2020-04-05 | 3.9 | 4.05 | — | 4.0 | 0.007 | 0.99 | 0.0 | 0.06 | 18.97 | 0.01 | 1.921 | 6.69 | 0.15 | 8.3 | 91.6 | 0.0 | -2.35 | 0.74 | 0.85 | 1.35 | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 20.06 | 0.00 | 1.935 | 9.77 | 0.29 | 5.0 | 95.0 | 0.0 | 1.23 | 1.43 | 0.74 | 0.84 | 1.11 | 20194 | 2280 | 8 | 86 | 4 | 0 | 0 | logfile |
✔ | 7BTP | 30181 | 2022-07-05 | 2020-04-02 | 4.01 | 4.31 | — | 4.1 | 0.007 | 1.11 | 0.0 | 0.06 | 11.60 | 0.01 | 2.220 | 7.30 | 0.59 | 11.6 | 88.3 | 0.0 | -4.46 | 0.83 | 0.71 | — | 4.1 | 0.004 | 0.78 | 0.0 | 0.04 | 12.60 | 0.00 | 2.078 | 15.20 | 0.05 | 10.0 | 90.0 | 0.0 | -1.44 | 1.10 | 0.86 | 0.79 | — | 20371 | 2534 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YSL | 10899 | 2022-07-03 | 2020-04-22 | 3.5 | 3.58 | 3.41 | 3.5 | 0.006 | 1.17 | 0.0 | 0.06 | 12.21 | 0.01 | 2.232 | 5.98 | 0.47 | 9.0 | 90.9 | 0.1 | -4.73 | 0.58 | 0.72 | 1.19 | 3.5 | 0.005 | 0.97 | 0.0 | 0.05 | 16.67 | 0.01 | 2.067 | 16.94 | 0.47 | 7.3 | 92.7 | 0.0 | -1.12 | 1.18 | 0.60 | 0.71 | 0.96 | 10128 | 1324 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M66 | 30114 | 2022-07-04 | 2020-03-13 | 4.1 | 4.40 | — | 4.2 | 0.005 | 1.08 | 0.0 | 0.06 | 16.35 | 0.01 | 2.231 | 9.42 | 0.00 | 8.8 | 91.2 | 0.0 | -5.00 | 0.64 | 0.75 | — | 4.2 | 0.003 | 0.81 | 0.0 | 0.05 | 14.78 | 0.01 | 2.024 | 14.40 | 0.00 | 7.8 | 92.2 | 0.0 | -1.13 | 1.67 | 0.64 | 0.75 | — | 14938 | 1855 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UW8 | 20919 | 2022-07-04 | 2019-11-04 | 4.02 | 4.12 | — | 4.0 | 0.005 | 0.90 | 4.0 | 0.05 | 14.81 | 0.01 | 2.173 | 4.55 | 0.00 | 6.4 | 93.6 | 0.0 | -4.15 | 0.69 | 0.83 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 14.40 | 0.00 | 2.129 | 8.79 | 0.00 | 6.1 | 93.9 | 0.0 | 0.18 | 1.66 | 0.69 | 0.82 | — | 19640 | 2408 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W4X | 21540 | 2022-07-04 | 2020-03-11 | 3.6 | 3.70 | 3.62 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 15.36 | 0.00 | 1.869 | 11.81 | 0.05 | 6.0 | 94.0 | 0.0 | -3.25 | 0.66 | 0.78 | 1.98 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 17.30 | 0.00 | 1.994 | 11.41 | 0.42 | 4.7 | 95.3 | 0.0 | -0.54 | 0.45 | 0.69 | 0.79 | 1.66 | 17678 | 2190 | 10 | 1 | 6 | 4 | 0 | logfile |
✔ | 6WB1 | 21584 | 2022-07-03 | 2020-03-26 | 4.7 | 4.87 | — | 4.6 | 0.002 | 0.50 | 0.0 | 0.04 | 12.49 | 0.00 | 2.204 | 7.21 | 0.55 | 4.5 | 95.4 | 0.1 | -4.82 | 0.86 | 0.80 | — | 4.6 | 0.003 | 0.61 | 0.0 | 0.04 | 13.12 | 0.00 | 2.159 | 11.05 | 0.00 | 4.3 | 95.7 | 0.0 | -0.90 | 0.73 | 0.88 | 0.84 | — | 8235 | 944 | 4 | 75 | 0 | 0 | 0 | logfile |
✔ | 6WXB | 21954 | 2022-07-05 | 2020-05-10 | 2.9 | 3.45 | 2.92 | 3.4 | 0.007 | 0.81 | 0.0 | 0.05 | 13.75 | 0.00 | 2.307 | 2.10 | 0.71 | 5.6 | 94.4 | 0.0 | -2.98 | 0.60 | 0.76 | 4.10 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 15.19 | 0.00 | 2.138 | 6.51 | 1.26 | 5.6 | 94.4 | 0.0 | -0.50 | 1.21 | 0.55 | 0.74 | 3.57 | 22698 | 1455 | 6 | 0 | 15 | 0 | 11049 | logfile |
✔ | 6UZY | 20964 | 2022-07-04 | 2019-11-15 | 3.38 | 3.52 | — | 3.5 | 0.012 | 1.10 | 7.0 | 0.07 | 15.17 | 0.01 | 2.265 | 6.91 | 0.00 | 2.6 | 97.4 | 0.0 | -3.44 | 0.66 | 0.82 | 2.53 | 3.5 | 0.002 | 0.50 | 0.0 | 0.04 | 15.49 | 0.00 | 2.289 | 6.04 | 0.06 | 2.2 | 97.8 | 0.0 | 1.66 | 0.33 | 0.63 | 0.81 | 1.84 | 16212 | 1946 | 14 | 0 | 21 | 0 | 0 | logfile |
✔ | 7JSV | 22460 | 2022-07-05 | 2020-08-16 | 3.9 | 3.98 | — | 4.0 | 0.020 | 2.10 | 0.0 | 0.10 | 13.46 | 0.01 | 2.348 | 6.75 | 0.00 | 0.0 | 100.0 | 0.0 | 1.16 | 0.61 | 0.80 | 2.43 | 4.0 | 0.003 | 0.79 | 0.0 | 0.04 | 15.99 | 0.00 | 2.123 | 12.88 | 0.38 | 1.0 | 99.0 | 0.0 | 0.10 | 0.90 | 0.64 | 0.83 | 2.63 | 22140 | 2706 | 82 | 0 | 41 | 0 | 0 | logfile |
✔ | 6WHT | 21675 | 2022-07-04 | 2020-04-08 | 4.39 | 5.00 | — | 4.6 | 0.006 | 0.85 | 0.0 | 0.05 | 13.38 | 0.01 | 1.983 | 23.64 | 0.63 | 17.3 | 82.3 | 0.3 | -5.16 | 0.65 | 0.69 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.04 | 12.28 | 0.00 | 2.081 | 11.73 | 0.00 | 8.8 | 91.2 | 0.0 | -1.33 | 0.52 | 0.75 | 0.79 | — | 20532 | 3082 | 10 | 0 | 8 | 0 | 0 | logfile |
✔ | 6WHS | 21674 | 2022-07-05 | 2020-04-08 | 4.0 | 4.40 | — | 4.2 | 0.010 | 0.93 | 0.0 | 0.05 | 14.29 | 0.01 | 2.088 | 19.72 | 0.82 | 16.6 | 83.4 | 0.0 | -4.97 | 0.70 | 0.75 | — | 4.2 | 0.005 | 0.77 | 0.0 | 0.05 | 15.41 | 0.00 | 2.111 | 12.61 | 0.41 | 8.9 | 91.1 | 0.0 | -1.40 | 0.49 | 0.77 | 0.84 | — | 22866 | 3172 | 10 | 0 | 12 | 0 | 0 | logfile |
✔ | 6Q0X | 20555 | 2022-07-03 | 2019-08-02 | 4.2 | 4.30 | — | 4.2 | 0.007 | 0.88 | 0.0 | 0.05 | 17.07 | 0.00 | 2.139 | 24.20 | 1.21 | 8.1 | 91.9 | 0.0 | -3.83 | 0.68 | 0.72 | — | 4.2 | 0.004 | 0.76 | 0.0 | 0.04 | 15.99 | 0.00 | 2.188 | 19.48 | 0.00 | 6.3 | 93.7 | 0.0 | 0.28 | 1.41 | 0.67 | 0.73 | — | 12468 | 1492 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LRR | 0959 | 2022-07-07 | 2020-01-16 | 3.37 | 3.45 | — | 3.4 | 0.014 | 1.22 | 0.0 | 0.07 | 11.04 | 0.01 | 2.274 | 9.44 | 0.52 | 7.6 | 92.3 | 0.1 | -5.11 | 0.71 | 0.84 | 3.59 | 3.4 | 0.013 | 1.17 | 5.0 | 0.05 | 15.04 | 0.01 | 1.751 | 18.91 | 0.22 | 6.6 | 93.4 | 0.0 | -2.05 | 0.56 | 0.71 | 0.81 | 2.54 | 43706 | 5494 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VXP | 21447 | 2022-07-04 | 2020-02-22 | 3.39 | 4.13 | — | 3.9 | 0.008 | 1.13 | 14.0 | 0.07 | 11.36 | 0.01 | 2.226 | 6.82 | 0.00 | 4.1 | 95.9 | 0.0 | -2.30 | 0.74 | 0.80 | 2.28 | 3.9 | 0.005 | 0.69 | 0.0 | 0.04 | 13.62 | 0.00 | 2.294 | 5.76 | 0.93 | 2.7 | 97.3 | 0.0 | 2.73 | 1.77 | 0.75 | 0.84 | 2.19 | 14819 | 1939 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VYF | 21458 | 2022-07-04 | 2020-02-26 | 3.3 | 3.38 | — | 3.3 | 0.005 | 0.68 | 0.0 | 0.04 | 13.96 | 0.00 | 2.223 | 8.29 | 0.27 | 8.7 | 91.3 | 0.0 | -3.53 | 0.73 | 0.87 | 2.78 | 3.3 | 0.006 | 0.63 | 0.0 | 0.05 | 15.62 | 0.00 | 2.147 | 9.92 | 0.54 | 10.1 | 89.9 | 0.0 | -1.15 | 0.90 | 0.74 | 0.88 | 2.92 | 13624 | 1728 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YSF | 10895 | 2022-07-03 | 2020-04-22 | 3.4 | 3.49 | 3.31 | 3.5 | 0.004 | 0.77 | 0.0 | 0.04 | 15.31 | 0.00 | 1.874 | 13.85 | 0.90 | 8.5 | 91.5 | 0.0 | -3.39 | 0.67 | 0.80 | 2.12 | 3.5 | 0.007 | 1.04 | 0.0 | 0.04 | 17.42 | 0.01 | 1.739 | 19.57 | 0.54 | 8.1 | 91.9 | 0.0 | -0.25 | 0.67 | 0.67 | 0.80 | 1.60 | 10220 | 1327 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BP3 | 30143 | 2022-07-03 | 2020-03-21 | 3.8 | 4.06 | — | 4.1 | 0.007 | 1.05 | 0.0 | 0.06 | 16.16 | 0.01 | 2.235 | 6.34 | 0.00 | 7.4 | 92.6 | 0.0 | -4.77 | 0.48 | 0.75 | 0.86 | 4.1 | 0.015 | 1.50 | 1.0 | 0.05 | 18.19 | 0.01 | 2.076 | 23.01 | 0.78 | 5.4 | 94.6 | 0.0 | -0.33 | 1.30 | 0.50 | 0.74 | 1.14 | 6080 | 788 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WBG | 21589 | 2022-07-04 | 2020-03-26 | 2.97 | 3.60 | — | 3.3 | 0.007 | 0.83 | 0.0 | 0.04 | 17.07 | 0.01 | 2.183 | 12.01 | 0.38 | 5.0 | 95.0 | 0.0 | -1.48 | 0.72 | 0.81 | 2.56 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 14.75 | 0.00 | 2.198 | 8.59 | 1.90 | 4.0 | 96.0 | 0.0 | 2.00 | 0.49 | 0.72 | 0.83 | 2.41 | 19712 | 2408 | 14 | 0 | 49 | 0 | 0 | logfile |
✔ | 7JGS | 22330 | 2022-07-05 | 2020-07-19 | 3.2 | 3.82 | 3.22 | 3.4 | 0.006 | 0.94 | 0.0 | 0.05 | 17.85 | 0.01 | 1.392 | 4.17 | 0.18 | 2.7 | 97.3 | 0.0 | -3.49 | 0.86 | 0.87 | 2.76 | 3.4 | 0.005 | 0.65 | 0.0 | 0.04 | 18.66 | 0.00 | 1.824 | 8.80 | 0.36 | 3.1 | 96.9 | 0.0 | 1.51 | 1.06 | 0.87 | 0.90 | 1.99 | 21743 | 2528 | 13 | 70 | 8 | 0 | 0 | logfile |