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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NSJ | 0498 | 2023-04-21 | 2019-01-24 | 2.7 | 3.69 | 2.67 | 3.6 | 0.008 | 1.12 | 0.0 | 0.06 | 13.77 | 0.01 | 2.340 | 8.25 | 2.18 | 6.0 | 94.0 | 0.0 | -4.40 | 0.61 | 0.75 | 5.00 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 14.04 | 0.00 | 2.234 | 5.27 | 1.09 | 4.0 | 96.0 | 0.0 | 2.26 | 0.53 | 0.58 | 0.75 | 2.91 | 9096 | 1092 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 7ABF | 11694 | 2023-04-27 | 2020-09-07 | 3.9 | 4.03 | — | 3.9 | 0.004 | 0.69 | 0.0 | 0.13 | 11.14 | 0.00 | 1.747 | 4.05 | 0.19 | 11.8 | 88.1 | 0.1 | -3.73 | 0.73 | 0.72 | 2.68 | 4.0 | 0.003 | 0.69 | 0.0 | 0.04 | 13.37 | 0.00 | 1.948 | 8.07 | 0.48 | 10.4 | 89.6 | 0.0 | -1.23 | 0.69 | 0.76 | 0.77 | 2.38 | 25904 | 3732 | 17 | 152 | 3 | 0 | 0 | logfile |
✔ | 6KXS | 0782 | 2023-04-26 | 2019-09-12 | 3.4 | 3.50 | — | 3.4 | 0.018 | 1.44 | 0.0 | 0.09 | 15.91 | 0.01 | 2.157 | 9.00 | 3.30 | 15.2 | 84.4 | 0.4 | -4.73 | 0.70 | 0.72 | 2.54 | 3.4 | 0.003 | 0.68 | 0.0 | 0.05 | 16.60 | 0.00 | 2.148 | 10.57 | 0.16 | 8.5 | 91.5 | 0.0 | -1.97 | 0.59 | 0.71 | 0.75 | 2.11 | 22499 | 2869 | 23 | 0 | 12 | 0 | 0 | logfile |
✔ | 6VK1 | 21223 | 2023-04-20 | 2020-01-18 | 3.9 | 3.99 | — | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 14.77 | 0.00 | 2.245 | 10.65 | 0.13 | 4.4 | 95.6 | 0.0 | -1.86 | 0.62 | 0.79 | 1.42 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 17.33 | 0.00 | 2.192 | 13.21 | 0.63 | 4.2 | 95.8 | 0.0 | 1.78 | 1.59 | 0.62 | 0.79 | 1.17 | 7259 | 882 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X6A | 22074 | 2023-04-25 | 2020-05-27 | 3.6 | 3.58 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.08 | 14.43 | 0.01 | 2.206 | 13.75 | 0.45 | 7.5 | 92.4 | 0.1 | -2.80 | 0.86 | 0.83 | 3.00 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 15.74 | 0.00 | 2.084 | 15.40 | 0.27 | 6.3 | 93.7 | 0.0 | -1.07 | 0.57 | 0.86 | 0.82 | 2.41 | 20240 | 2524 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W4J | 32305 | 2023-04-23 | 2021-11-28 | 3.2 | 3.23 | — | 3.2 | 0.006 | 0.77 | 2.0 | 0.04 | 17.54 | 0.01 | 2.198 | 9.09 | 0.21 | 3.8 | 96.1 | 0.1 | 1.04 | 0.78 | 0.87 | 2.70 | 3.2 | 0.006 | 0.65 | 0.0 | 0.05 | 17.13 | 0.01 | 2.097 | 8.15 | 0.34 | 4.5 | 95.4 | 0.0 | 0.72 | 0.35 | 0.79 | 0.88 | 2.83 | 66607 | 8140 | 65 | 0 | 37 | 0 | 0 | logfile |
✔ | 6QSU | 4629 | 2023-04-28 | 2019-02-22 | 2.4 | 2.64 | 2.56 | 2.6 | 0.006 | 0.65 | 0.0 | 0.05 | 13.44 | 0.00 | 1.918 | 4.58 | 0.61 | 4.6 | 95.4 | 0.0 | 0.27 | 0.81 | 0.87 | 4.68 | 2.6 | 0.002 | 0.53 | 0.0 | 0.04 | 16.49 | 0.00 | 1.940 | 5.87 | 0.67 | 3.1 | 96.9 | 0.0 | 0.36 | 1.15 | 0.72 | 0.86 | 4.21 | 75758 | 9684 | 60 | 0 | 36 | 1178 | 0 | logfile |
✔ | 7W2K | 32263 | 2023-04-23 | 2021-11-24 | 2.9 | 3.00 | — | 3.0 | 0.007 | 0.77 | 2.0 | 0.04 | 17.96 | 0.01 | 2.125 | 9.55 | 1.51 | 3.6 | 96.3 | 0.1 | 1.00 | 0.80 | 0.88 | 3.00 | 3.0 | 0.003 | 0.56 | 0.0 | 0.04 | 17.48 | 0.00 | 2.170 | 8.41 | 2.04 | 3.6 | 96.3 | 0.0 | 0.96 | 0.29 | 0.79 | 0.88 | 2.90 | 66522 | 8140 | 66 | 0 | 37 | 0 | 0 | logfile |
✔ | 6YS5 | 10892 | 2023-04-24 | 2020-04-21 | 3.0 | 3.05 | 2.83 | 3.0 | 0.007 | 0.72 | 0.0 | 0.05 | 15.84 | 0.01 | 1.880 | 5.29 | 7.15 | 7.4 | 92.6 | 0.0 | -3.10 | 0.80 | 0.87 | 2.82 | 3.0 | 0.005 | 0.61 | 0.0 | 0.04 | 15.96 | 0.00 | 1.876 | 5.39 | 5.11 | 7.3 | 92.7 | 0.0 | -0.24 | 0.31 | 0.80 | 0.90 | 2.97 | 16864 | 852 | 13 | 477 | 24 | 0 | 0 | logfile |
✔ | 6NSK | 0499 | 2023-04-21 | 2019-01-24 | 2.7 | 2.82 | 2.55 | 3.1 | 0.009 | 1.11 | 0.0 | 0.06 | 14.42 | 0.01 | 2.213 | 4.78 | 0.00 | 3.6 | 96.4 | 0.0 | -3.23 | 0.62 | 0.77 | 5.14 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.68 | 0.00 | 2.265 | 5.59 | 1.74 | 3.7 | 96.3 | 0.0 | 2.52 | 0.42 | 0.65 | 0.82 | 3.62 | 9096 | 1092 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 7KSM | 23020 | 2023-04-27 | 2020-11-23 | 3.2 | 2.90 | 3.21 | 3.1 | 0.007 | 0.79 | 0.0 | 0.05 | 14.48 | 0.01 | 1.934 | 7.88 | 0.08 | 4.4 | 95.6 | 0.0 | -2.42 | 0.76 | 0.86 | 3.00 | 3.1 | 0.002 | 0.55 | 0.0 | 0.04 | 16.01 | 0.00 | 2.005 | 7.70 | 0.30 | 3.7 | 96.3 | 0.0 | 0.21 | 1.22 | 0.77 | 0.87 | 2.33 | 24547 | 3137 | 13 | 0 | 22 | 0 | 0 | logfile |
✔ | 7W4K | 32306 | 2023-04-23 | 2021-11-28 | 3.2 | 3.31 | — | 3.3 | 0.007 | 0.76 | 2.0 | 0.05 | 17.22 | 0.01 | 1.897 | 10.90 | 0.41 | 4.0 | 95.9 | 0.1 | 1.03 | 0.77 | 0.86 | 2.51 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 16.90 | 0.00 | 2.117 | 8.34 | 0.24 | 4.1 | 95.8 | 0.0 | 0.98 | 0.36 | 0.78 | 0.87 | 2.35 | 66374 | 8140 | 64 | 0 | 34 | 0 | 0 | logfile |
✔ | 7W4N | 32309 | 2023-04-23 | 2021-11-28 | 3.0 | 3.03 | — | 3.0 | 0.010 | 0.83 | 0.0 | 0.05 | 17.73 | 0.01 | 1.982 | 8.71 | 1.28 | 3.9 | 96.1 | 0.0 | 0.75 | 0.78 | 0.88 | 3.05 | 3.0 | 0.004 | 0.61 | 0.0 | 0.04 | 17.51 | 0.00 | 2.133 | 7.54 | 2.57 | 4.5 | 95.5 | 0.0 | 0.76 | 1.13 | 0.78 | 0.88 | 2.97 | 66477 | 8140 | 65 | 0 | 34 | 0 | 0 | logfile |
✔ | 7EFo | 31088 | 2023-04-20 | 2021-03-22 | 3.85 | 3.87 | — | 3.9 | 0.010 | 1.20 | 1.0 | 0.15 | 17.15 | 0.01 | 2.071 | 58.70 | 6.18 | 7.1 | 92.8 | 0.1 | -2.21 | 0.52 | 0.71 | 1.44 | 3.9 | 0.003 | 0.82 | 0.0 | 0.05 | 17.03 | 0.00 | 2.131 | 19.46 | 0.39 | 6.3 | 93.7 | 0.0 | -1.13 | 1.26 | 0.54 | 0.72 | 0.80 | 7306 | 916 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7KSL | 23019 | 2023-04-24 | 2020-11-23 | 3.5 | 2.75 | 3.35 | 3.3 | 0.007 | 0.78 | 0.0 | 0.05 | 14.07 | 0.01 | 2.133 | 8.85 | 0.12 | 8.7 | 91.3 | 0.0 | -3.52 | 0.73 | 0.81 | 2.24 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 15.45 | 0.00 | 2.148 | 7.10 | 0.29 | 4.7 | 95.3 | 0.0 | 0.14 | 1.22 | 0.73 | 0.81 | 2.00 | 18306 | 2551 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6SEF | 10154 | 2023-04-22 | 2019-07-29 | 3.7 | 4.25 | — | 3.6 | 0.007 | 0.85 | 0.0 | 0.05 | 27.92 | 0.00 | 2.225 | 4.94 | 0.00 | 2.7 | 97.3 | 0.0 | -2.10 | 0.88 | 0.84 | 2.28 | 3.5 | 0.005 | 0.76 | 0.0 | 0.04 | 28.99 | 0.00 | 2.071 | 16.74 | 0.80 | 2.9 | 97.1 | 0.0 | 0.58 | 0.72 | 0.89 | 0.85 | 1.99 | 11919 | 751 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 7W0Y | 32249 | 2023-04-25 | 2021-11-18 | 3.4 | 3.42 | — | 3.4 | 0.008 | 0.81 | 0.0 | 0.04 | 17.98 | 0.01 | 2.148 | 11.79 | 0.22 | 3.4 | 96.5 | 0.1 | 1.17 | 0.78 | 0.85 | 2.73 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 17.04 | 0.00 | 2.142 | 8.54 | 0.24 | 3.3 | 96.6 | 0.0 | 1.18 | 0.35 | 0.78 | 0.86 | 2.57 | 68093 | 8269 | 68 | 0 | 44 | 0 | 0 | logfile |
✔ | 7Q2X | 13783 | 2023-04-24 | 2021-10-26 | 3.0 | 2.22 | — | 2.1 | 0.002 | 0.55 | 0.0 | 0.04 | 17.41 | 0.00 | 2.035 | 7.69 | 0.11 | 2.6 | 97.4 | 0.0 | 2.57 | 0.74 | 0.70 | 1.84 | 2.0 | 0.003 | 0.69 | 0.0 | 0.04 | 20.45 | 0.00 | 1.906 | 10.04 | 2.31 | 3.4 | 96.6 | 0.0 | 1.78 | 1.28 | 0.77 | 0.79 | 2.17 | 18240 | 2098 | 8 | 72 | 6 | 0 | 0 | logfile |
✔ | 7NDA | 12281 | 2023-04-28 | 2021-01-30 | 3.3 | 3.59 | — | 3.5 | 0.004 | 0.63 | 0.0 | 0.05 | 10.98 | 0.00 | 2.051 | 5.34 | 0.30 | 4.4 | 95.3 | 0.3 | -0.16 | 0.81 | 0.82 | 2.59 | 3.5 | 0.003 | 0.68 | 0.0 | 0.05 | 14.04 | 0.00 | 2.118 | 11.18 | 0.23 | 3.0 | 97.0 | 0.0 | -0.05 | 0.75 | 0.83 | 0.86 | 2.25 | 27721 | 3452 | 23 | 0 | 63 | 0 | 0 | logfile |
✔ | 6TNY | 10539 | 2023-04-25 | 2019-12-10 | 3.08 | 3.41 | — | 3.1 | 0.009 | 1.10 | 2.0 | 0.06 | 17.58 | 0.01 | 1.826 | 7.98 | 0.83 | 6.4 | 93.2 | 0.3 | -3.49 | 0.83 | 0.76 | 2.04 | 3.1 | 0.003 | 0.67 | 0.0 | 0.04 | 18.05 | 0.00 | 2.147 | 8.49 | 0.24 | 4.9 | 95.1 | 0.0 | -0.52 | 0.75 | 0.86 | 0.81 | 1.93 | 19726 | 2399 | 10 | 50 | 3 | 0 | 0 | logfile |