Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XHJ	22187	2023-09-30	2020-06-18	3.62	4.10	—	4.0	0.014	1.38	18.0	0.08	13.47	0.01	2.225	3.12	0.00	3.5	96.5	0.0	-2.59	0.61	0.53	0.86	4.0	0.002	0.63	0.0	0.04	15.79	0.00	2.079	4.93	0.20	1.4	98.6	0.0	0.51	2.45	0.75	0.75	1.05	60624	8514	18	0	36	0	0	logfile
✔	8D8R	27255	2023-09-27	2022-06-08	4.1	4.18	1.95	4.1	0.011	1.25	0.0	0.06	11.00	0.01	2.512	1.08	0.00	2.1	97.9	0.0	1.96	0.59	0.61	—	4.1	0.003	0.75	0.0	0.05	12.45	0.01	2.191	14.44	0.00	6.7	93.3	0.0	-0.58	1.90	0.62	0.66	—	3323	425	3	0	1	0	0	logfile
✔	8BDZ	15995	2023-09-27	2022-10-20	3.13	3.37	1.52	3.1	0.002	0.52	0.0	0.04	12.41	0.00	2.264	6.23	0.00	3.0	97.0	0.0	2.26	0.48	0.84	2.77	3.1	0.004	0.58	0.0	0.04	14.08	0.00	2.208	9.58	0.27	1.7	98.3	0.0	3.07	0.44	0.49	0.86	2.82	3309	414	3	0	0	0	0	logfile
✔	7M8J	23717	2023-09-28	2021-03-29	3.48	3.83	3.41	3.7	0.006	0.96	0.0	0.05	14.72	0.00	1.837	12.31	0.00	6.8	93.2	0.0	-0.32	0.69	0.80	2.61	3.7	0.004	0.64	0.0	0.04	15.29	0.00	2.090	7.53	0.52	7.4	92.6	0.0	-0.57	0.47	0.69	0.81	2.81	6915	453	3	0	0	0	3398	logfile
✔	7PY4	13711	2023-09-30	2021-10-08	3.1	3.52	3.18	3.5	0.004	0.59	0.0	0.05	12.30	0.00	1.650	4.90	0.08	3.1	96.9	0.0	0.83	0.65	0.82	3.46	3.5	0.003	0.53	0.0	0.04	14.56	0.00	2.028	5.45	0.00	3.2	96.8	0.0	0.96	0.74	0.67	0.85	2.34	11835	1439	5	0	11	0	0	logfile
✔	8A1R	15084	2023-09-29	2022-06-01	3.6	5.63	3.62	3.4	0.014	1.35	0.0	0.05	15.14	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.003	0.77	1.0	0.05	16.10	0.00	2.170	19.32	0.41	5.9	94.1	0.0	-0.55	0.61	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7ZKi	14763	2023-09-28	2022-04-13	3.6	3.32	3.71	3.1	0.011	0.83	0.0	0.05	13.82	0.04	1.408	9.61	0.17	2.2	97.8	0.0	-0.08	0.57	0.73	1.30	3.2	0.002	0.90	0.0	0.04	15.37	0.01	1.992	8.66	0.00	3.4	96.6	0.0	-0.17	0.43	0.57	0.74	1.24	7120	688	5	77	2	0	0	logfile
✔	7BJ2	12193	2023-09-29	2021-01-13	3.0	3.64	3.01	3.2	0.003	0.62	0.0	0.04	14.87	0.00	2.246	12.91	0.00	4.0	96.0	0.0	0.20	0.72	0.80	2.36	3.2	0.007	0.70	0.0	0.04	16.76	0.00	2.230	13.68	1.03	5.9	94.1	0.0	-0.07	0.53	0.74	0.91	2.91	58552	7956	26	0	0	0	0	logfile
✔	7YQ4	34019	2023-09-30	2022-08-05	3.95	4.36	4.08	4.3	0.016	1.30	0.0	0.07	17.82	0.02	2.256	4.50	0.53	9.0	91.0	0.0	-4.40	0.72	0.74	1.65	4.3	0.004	0.95	0.0	0.05	18.94	0.01	2.113	10.94	0.79	9.1	90.9	0.0	-2.93	1.12	0.74	0.80	1.46	10618	1243	5	24	0	0	0	logfile
✔	7ZDT	14669	2023-09-29	2022-03-29	2.71	2.89	2.68	2.9	0.005	0.66	0.0	0.04	13.49	0.00	1.945	6.38	0.00	1.3	98.7	0.0	-0.81	0.76	0.90	3.85	2.9	0.004	0.55	0.0	0.04	15.76	0.00	1.944	5.22	1.28	1.7	98.3	0.0	2.14	0.34	0.74	0.91	3.63	9003	1155	3	0	2	0	0	logfile
✔	7NPW	12524	2023-09-30	2021-02-28	3.99	4.53	—	4.3	0.003	0.67	0.0	0.04	13.77	0.00	2.290	12.91	0.00	3.3	96.7	0.0	0.92	0.52	0.76	1.58	4.3	0.003	0.78	0.0	0.05	16.19	0.00	2.160	16.52	0.66	4.0	96.0	0.0	0.75	0.62	0.56	0.81	1.26	9723	1278	3	0	0	0	0	logfile
✔	8D48	27177	2023-09-28	2022-06-01	3.7	3.91	3.59	3.9	0.005	0.81	1.0	0.05	15.51	0.01	1.565	11.86	0.00	7.2	92.8	0.0	-1.11	0.72	0.79	2.07	3.9	0.003	0.69	0.0	0.05	15.92	0.00	2.223	8.73	0.16	5.9	94.1	0.0	-0.65	0.98	0.72	0.80	1.97	5545	714	4	0	2	0	0	logfile
✔	7oZN	13129	2023-09-28	2021-06-28	3.5	3.79	3.49	3.7	0.002	0.42	0.0	0.04	14.10	0.00	2.073	4.61	0.00	2.0	98.0	0.0	1.13	0.77	0.72	1.17	3.7	0.004	0.69	0.0	0.05	16.69	0.00	2.069	15.15	0.51	3.5	96.5	0.0	-0.01	0.84	0.80	0.78	1.48	54330	6774	32	0	10	0	0	logfile
✔	7MTR	23995	2023-09-30	2021-05-13	3.3	2.40	—	2.1	0.006	0.93	1.0	0.05	13.82	0.01	2.236	7.85	1.25	4.1	95.9	0.0	-0.18	0.78	0.75	2.62	2.1	0.004	0.63	0.0	0.04	14.93	0.01	2.122	4.80	0.21	3.5	96.5	0.0	0.08	0.52	0.80	0.80	2.26	10933	1526	4	0	3	0	0	logfile
✔	7ZDK	14652	2023-09-29	2022-03-29	3.01	3.14	2.96	3.1	0.007	0.78	0.0	0.05	14.26	0.00	2.219	7.96	0.00	1.6	98.4	0.0	-1.50	0.76	0.89	3.46	3.1	0.002	0.51	0.0	0.04	15.53	0.00	1.980	6.33	0.11	1.9	98.1	0.0	1.56	0.33	0.72	0.90	2.61	9089	1161	4	0	4	0	0	logfile
✔	8EiQ	28161	2023-09-29	2022-09-15	3.0	2.87	3.05	3.2	0.006	1.11	0.0	0.05	12.35	0.01	1.936	1.35	1.78	1.3	98.7	0.0	-1.39	0.65	0.87	3.70	3.1	0.003	0.53	0.0	0.04	16.00	0.00	1.962	3.37	1.68	2.2	97.8	0.0	0.72	1.61	0.66	0.87	2.53	9578	1162	3	0	25	0	0	logfile
✔	8B0F	15779	2023-09-29	2022-09-07	3.0	3.33	3.08	3.1	0.004	0.75	0.0	0.05	14.65	0.01	2.067	4.43	1.40	7.8	92.2	0.0	-1.39	0.81	0.81	3.23	3.1	0.004	0.65	0.0	0.04	15.05	0.00	1.918	6.32	0.91	5.0	95.0	0.0	-0.12	1.37	0.81	0.82	2.96	60654	3910	12	0	9	0	29718	logfile
✔	6S6L	10103	2023-09-30	2019-07-03	3.1	2.99	2.95	2.9	0.014	1.12	0.0	0.07	9.31	0.01	2.263	5.39	0.16	5.3	94.7	0.0	-2.85	0.39	0.65	3.67	2.9	0.002	0.59	0.0	0.04	12.12	0.01	2.158	8.90	0.24	3.5	96.5	0.0	-0.82	0.55	0.40	0.66	2.99	11587	1510	3	0	0	0	0	logfile
✔	7Z0o	14428	2023-09-30	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.63	0.00	2.189	6.20	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.59	0.0	0.04	21.28	0.00	2.134	9.34	3.46	2.5	97.5	0.0	1.84	0.50	0.77	0.79	3.27	11864	1256	10	78	0	0	0	logfile
✔	6X0L	21978	2023-09-28	2020-05-16	3.9	3.69	—	3.6	0.005	0.85	0.0	0.05	18.72	0.00	2.067	21.30	0.13	5.0	95.0	0.0	-1.57	0.59	0.67	1.05	3.5	0.003	0.78	0.0	0.04	20.20	0.00	2.182	19.25	0.77	5.0	95.0	0.0	0.15	0.68	0.60	0.68	1.31	8037	894	7	40	0	0	0	logfile

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