Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WGE	21663	2022-07-04	2020-04-05	3.9	4.05	—	4.0	0.007	0.99	0.0	0.06	18.97	0.01	1.921	6.69	0.15	8.3	91.6	0.0	-2.35	0.74	0.85	1.35	3.9	0.003	0.64	0.0	0.04	20.06	0.00	1.935	9.77	0.29	5.0	95.0	0.0	1.23	1.43	0.74	0.84	1.11	20194	2280	8	86	4	0	0	logfile
✔	7BTP	30181	2022-07-05	2020-04-02	4.01	4.31	—	4.1	0.007	1.11	0.0	0.06	11.60	0.01	2.220	7.30	0.59	11.6	88.3	0.0	-4.46	0.83	0.71	—	4.1	0.004	0.78	0.0	0.04	12.60	0.00	2.078	15.20	0.05	10.0	90.0	0.0	-1.44	1.10	0.86	0.79	—	20371	2534	6	0	0	0	0	logfile
✔	6YSL	10899	2022-07-03	2020-04-22	3.5	3.58	3.41	3.5	0.006	1.17	0.0	0.06	12.21	0.01	2.232	5.98	0.47	9.0	90.9	0.1	-4.73	0.58	0.72	1.19	3.5	0.005	0.97	0.0	0.05	16.67	0.01	2.067	16.94	0.47	7.3	92.7	0.0	-1.12	1.18	0.60	0.71	0.96	10128	1324	7	0	0	0	0	logfile
✔	6M66	30114	2022-07-04	2020-03-13	4.1	4.40	—	4.2	0.005	1.08	0.0	0.06	16.35	0.01	2.231	9.42	0.00	8.8	91.2	0.0	-5.00	0.64	0.75	—	4.2	0.003	0.81	0.0	0.05	14.78	0.01	2.024	14.40	0.00	7.8	92.2	0.0	-1.13	1.67	0.64	0.75	—	14938	1855	7	0	0	0	0	logfile
✔	6UW8	20919	2022-07-04	2019-11-04	4.02	4.12	—	4.0	0.005	0.90	4.0	0.05	14.81	0.01	2.173	4.55	0.00	6.4	93.6	0.0	-4.15	0.69	0.83	—	4.0	0.003	0.61	0.0	0.04	14.40	0.00	2.129	8.79	0.00	6.1	93.9	0.0	0.18	1.66	0.69	0.82	—	19640	2408	4	0	0	0	0	logfile
✔	6W4X	21540	2022-07-04	2020-03-11	3.6	3.70	3.62	3.7	0.004	0.65	0.0	0.04	15.36	0.00	1.869	11.81	0.05	6.0	94.0	0.0	-3.25	0.66	0.78	1.98	3.7	0.003	0.67	0.0	0.04	17.30	0.00	1.994	11.41	0.42	4.7	95.3	0.0	-0.54	0.45	0.69	0.79	1.66	17678	2190	10	1	6	4	0	logfile
✔	6WB1	21584	2022-07-03	2020-03-26	4.7	4.87	—	4.6	0.002	0.50	0.0	0.04	12.49	0.00	2.204	7.21	0.55	4.5	95.4	0.1	-4.82	0.86	0.80	—	4.6	0.003	0.61	0.0	0.04	13.12	0.00	2.159	11.05	0.00	4.3	95.7	0.0	-0.90	0.73	0.88	0.84	—	8235	944	4	75	0	0	0	logfile
✔	6WXB	21954	2022-07-05	2020-05-10	2.9	3.45	2.92	3.4	0.007	0.81	0.0	0.05	13.75	0.00	2.307	2.10	0.71	5.6	94.4	0.0	-2.98	0.60	0.76	4.10	3.4	0.003	0.52	0.0	0.04	15.19	0.00	2.138	6.51	1.26	5.6	94.4	0.0	-0.50	1.21	0.55	0.74	3.57	22698	1455	6	0	15	0	11049	logfile
✔	6UZY	20964	2022-07-04	2019-11-15	3.38	3.52	—	3.5	0.012	1.10	7.0	0.07	15.17	0.01	2.265	6.91	0.00	2.6	97.4	0.0	-3.44	0.66	0.82	2.53	3.5	0.002	0.50	0.0	0.04	15.49	0.00	2.289	6.04	0.06	2.2	97.8	0.0	1.66	0.33	0.63	0.81	1.84	16212	1946	14	0	21	0	0	logfile
✔	7JSV	22460	2022-07-05	2020-08-16	3.9	3.98	—	4.0	0.020	2.10	0.0	0.10	13.46	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.003	0.79	0.0	0.04	15.99	0.00	2.123	12.88	0.38	1.0	99.0	0.0	0.10	0.90	0.64	0.83	2.63	22140	2706	82	0	41	0	0	logfile
✔	6WHT	21675	2022-07-04	2020-04-08	4.39	5.00	—	4.6	0.006	0.85	0.0	0.05	13.38	0.01	1.983	23.64	0.63	17.3	82.3	0.3	-5.16	0.65	0.69	—	4.6	0.003	0.69	0.0	0.04	12.28	0.00	2.081	11.73	0.00	8.8	91.2	0.0	-1.33	0.52	0.75	0.79	—	20532	3082	10	0	8	0	0	logfile
✔	6WHS	21674	2022-07-05	2020-04-08	4.0	4.40	—	4.2	0.010	0.93	0.0	0.05	14.29	0.01	2.088	19.72	0.82	16.6	83.4	0.0	-4.97	0.70	0.75	—	4.2	0.005	0.77	0.0	0.05	15.41	0.00	2.111	12.61	0.41	8.9	91.1	0.0	-1.40	0.49	0.77	0.84	—	22866	3172	10	0	12	0	0	logfile
✔	6Q0X	20555	2022-07-03	2019-08-02	4.2	4.30	—	4.2	0.007	0.88	0.0	0.05	17.07	0.00	2.139	24.20	1.21	8.1	91.9	0.0	-3.83	0.68	0.72	—	4.2	0.004	0.76	0.0	0.04	15.99	0.00	2.188	19.48	0.00	6.3	93.7	0.0	0.28	1.41	0.67	0.73	—	12468	1492	4	0	0	0	0	logfile
✔	6LRR	0959	2022-07-07	2020-01-16	3.37	3.45	—	3.4	0.014	1.22	0.0	0.07	11.04	0.01	2.274	9.44	0.52	7.6	92.3	0.1	-5.11	0.71	0.84	3.59	3.4	0.013	1.17	5.0	0.05	15.04	0.01	1.751	18.91	0.22	6.6	93.4	0.0	-2.05	0.56	0.71	0.81	2.54	43706	5494	24	0	0	0	0	logfile
✔	6VXP	21447	2022-07-04	2020-02-22	3.39	4.13	—	3.9	0.008	1.13	14.0	0.07	11.36	0.01	2.226	6.82	0.00	4.1	95.9	0.0	-2.30	0.74	0.80	2.28	3.9	0.005	0.69	0.0	0.04	13.62	0.00	2.294	5.76	0.93	2.7	97.3	0.0	2.73	1.77	0.75	0.84	2.19	14819	1939	7	0	0	0	0	logfile
✔	6VYF	21458	2022-07-04	2020-02-26	3.3	3.38	—	3.3	0.005	0.68	0.0	0.04	13.96	0.00	2.223	8.29	0.27	8.7	91.3	0.0	-3.53	0.73	0.87	2.78	3.3	0.006	0.63	0.0	0.05	15.62	0.00	2.147	9.92	0.54	10.1	89.9	0.0	-1.15	0.90	0.74	0.88	2.92	13624	1728	4	0	0	0	0	logfile
✔	6YSF	10895	2022-07-03	2020-04-22	3.4	3.49	3.31	3.5	0.004	0.77	0.0	0.04	15.31	0.00	1.874	13.85	0.90	8.5	91.5	0.0	-3.39	0.67	0.80	2.12	3.5	0.007	1.04	0.0	0.04	17.42	0.01	1.739	19.57	0.54	8.1	91.9	0.0	-0.25	0.67	0.67	0.80	1.60	10220	1327	7	0	0	0	0	logfile
✔	7BP3	30143	2022-07-03	2020-03-21	3.8	4.06	—	4.1	0.007	1.05	0.0	0.06	16.16	0.01	2.235	6.34	0.00	7.4	92.6	0.0	-4.77	0.48	0.75	0.86	4.1	0.015	1.50	1.0	0.05	18.19	0.01	2.076	23.01	0.78	5.4	94.6	0.0	-0.33	1.30	0.50	0.74	1.14	6080	788	2	0	0	0	0	logfile
✔	6WBG	21589	2022-07-04	2020-03-26	2.97	3.60	—	3.3	0.007	0.83	0.0	0.04	17.07	0.01	2.183	12.01	0.38	5.0	95.0	0.0	-1.48	0.72	0.81	2.56	3.3	0.003	0.63	0.0	0.04	14.75	0.00	2.198	8.59	1.90	4.0	96.0	0.0	2.00	0.49	0.72	0.83	2.41	19712	2408	14	0	49	0	0	logfile
✔	7JGS	22330	2022-07-05	2020-07-19	3.2	3.82	3.22	3.4	0.006	0.94	0.0	0.05	17.85	0.01	1.392	4.17	0.18	2.7	97.3	0.0	-3.49	0.86	0.87	2.76	3.4	0.005	0.65	0.0	0.04	18.66	0.00	1.824	8.80	0.36	3.1	96.9	0.0	1.51	1.06	0.87	0.90	1.99	21743	2528	13	70	8	0	0	logfile

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