Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NSJ	0498	2023-04-21	2019-01-24	2.7	3.69	2.67	3.6	0.008	1.12	0.0	0.06	13.77	0.01	2.340	8.25	2.18	6.0	94.0	0.0	-4.40	0.61	0.75	5.00	3.6	0.003	0.59	0.0	0.04	14.04	0.00	2.234	5.27	1.09	4.0	96.0	0.0	2.26	0.53	0.58	0.75	2.91	9096	1092	12	0	18	0	0	logfile
✔	7ABF	11694	2023-04-27	2020-09-07	3.9	4.03	—	3.9	0.004	0.69	0.0	0.13	11.14	0.00	1.747	4.05	0.19	11.8	88.1	0.1	-3.73	0.73	0.72	2.68	4.0	0.003	0.69	0.0	0.04	13.37	0.00	1.948	8.07	0.48	10.4	89.6	0.0	-1.23	0.69	0.76	0.77	2.38	25904	3732	17	152	3	0	0	logfile
✔	6KXS	0782	2023-04-26	2019-09-12	3.4	3.50	—	3.4	0.018	1.44	0.0	0.09	15.91	0.01	2.157	9.00	3.30	15.2	84.4	0.4	-4.73	0.70	0.72	2.54	3.4	0.003	0.68	0.0	0.05	16.60	0.00	2.148	10.57	0.16	8.5	91.5	0.0	-1.97	0.59	0.71	0.75	2.11	22499	2869	23	0	12	0	0	logfile
✔	6VK1	21223	2023-04-20	2020-01-18	3.9	3.99	—	3.9	0.003	0.59	0.0	0.04	14.77	0.00	2.245	10.65	0.13	4.4	95.6	0.0	-1.86	0.62	0.79	1.42	3.9	0.004	0.86	0.0	0.05	17.33	0.00	2.192	13.21	0.63	4.2	95.8	0.0	1.78	1.59	0.62	0.79	1.17	7259	882	2	0	0	0	0	logfile
✔	6X6A	22074	2023-04-25	2020-05-27	3.6	3.58	—	3.4	0.010	1.29	0.0	0.08	14.43	0.01	2.206	13.75	0.45	7.5	92.4	0.1	-2.80	0.86	0.83	3.00	3.4	0.003	0.67	0.0	0.04	15.74	0.00	2.084	15.40	0.27	6.3	93.7	0.0	-1.07	0.57	0.86	0.82	2.41	20240	2524	8	0	0	0	0	logfile
✔	7W4J	32305	2023-04-23	2021-11-28	3.2	3.23	—	3.2	0.006	0.77	2.0	0.04	17.54	0.01	2.198	9.09	0.21	3.8	96.1	0.1	1.04	0.78	0.87	2.70	3.2	0.006	0.65	0.0	0.05	17.13	0.01	2.097	8.15	0.34	4.5	95.4	0.0	0.72	0.35	0.79	0.88	2.83	66607	8140	65	0	37	0	0	logfile
✔	6QSU	4629	2023-04-28	2019-02-22	2.4	2.64	2.56	2.6	0.006	0.65	0.0	0.05	13.44	0.00	1.918	4.58	0.61	4.6	95.4	0.0	0.27	0.81	0.87	4.68	2.6	0.002	0.53	0.0	0.04	16.49	0.00	1.940	5.87	0.67	3.1	96.9	0.0	0.36	1.15	0.72	0.86	4.21	75758	9684	60	0	36	1178	0	logfile
✔	7W2K	32263	2023-04-23	2021-11-24	2.9	3.00	—	3.0	0.007	0.77	2.0	0.04	17.96	0.01	2.125	9.55	1.51	3.6	96.3	0.1	1.00	0.80	0.88	3.00	3.0	0.003	0.56	0.0	0.04	17.48	0.00	2.170	8.41	2.04	3.6	96.3	0.0	0.96	0.29	0.79	0.88	2.90	66522	8140	66	0	37	0	0	logfile
✔	6YS5	10892	2023-04-24	2020-04-21	3.0	3.05	2.83	3.0	0.007	0.72	0.0	0.05	15.84	0.01	1.880	5.29	7.15	7.4	92.6	0.0	-3.10	0.80	0.87	2.82	3.0	0.005	0.61	0.0	0.04	15.96	0.00	1.876	5.39	5.11	7.3	92.7	0.0	-0.24	0.31	0.80	0.90	2.97	16864	852	13	477	24	0	0	logfile
✔	6NSK	0499	2023-04-21	2019-01-24	2.7	2.82	2.55	3.1	0.009	1.11	0.0	0.06	14.42	0.01	2.213	4.78	0.00	3.6	96.4	0.0	-3.23	0.62	0.77	5.14	3.1	0.003	0.58	0.0	0.04	14.68	0.00	2.265	5.59	1.74	3.7	96.3	0.0	2.52	0.42	0.65	0.82	3.62	9096	1092	12	0	18	0	0	logfile
✔	7KSM	23020	2023-04-27	2020-11-23	3.2	2.90	3.21	3.1	0.007	0.79	0.0	0.05	14.48	0.01	1.934	7.88	0.08	4.4	95.6	0.0	-2.42	0.76	0.86	3.00	3.1	0.002	0.55	0.0	0.04	16.01	0.00	2.005	7.70	0.30	3.7	96.3	0.0	0.21	1.22	0.77	0.87	2.33	24547	3137	13	0	22	0	0	logfile
✔	7W4K	32306	2023-04-23	2021-11-28	3.2	3.31	—	3.3	0.007	0.76	2.0	0.05	17.22	0.01	1.897	10.90	0.41	4.0	95.9	0.1	1.03	0.77	0.86	2.51	3.3	0.003	0.58	0.0	0.04	16.90	0.00	2.117	8.34	0.24	4.1	95.8	0.0	0.98	0.36	0.78	0.87	2.35	66374	8140	64	0	34	0	0	logfile
✔	7W4N	32309	2023-04-23	2021-11-28	3.0	3.03	—	3.0	0.010	0.83	0.0	0.05	17.73	0.01	1.982	8.71	1.28	3.9	96.1	0.0	0.75	0.78	0.88	3.05	3.0	0.004	0.61	0.0	0.04	17.51	0.00	2.133	7.54	2.57	4.5	95.5	0.0	0.76	1.13	0.78	0.88	2.97	66477	8140	65	0	34	0	0	logfile
✔	7EFo	31088	2023-04-20	2021-03-22	3.85	3.87	—	3.9	0.010	1.20	1.0	0.15	17.15	0.01	2.071	58.70	6.18	7.1	92.8	0.1	-2.21	0.52	0.71	1.44	3.9	0.003	0.82	0.0	0.05	17.03	0.00	2.131	19.46	0.39	6.3	93.7	0.0	-1.13	1.26	0.54	0.72	0.80	7306	916	5	0	1	0	0	logfile
✔	7KSL	23019	2023-04-24	2020-11-23	3.5	2.75	3.35	3.3	0.007	0.78	0.0	0.05	14.07	0.01	2.133	8.85	0.12	8.7	91.3	0.0	-3.52	0.73	0.81	2.24	3.3	0.003	0.61	0.0	0.04	15.45	0.00	2.148	7.10	0.29	4.7	95.3	0.0	0.14	1.22	0.73	0.81	2.00	18306	2551	10	0	5	0	0	logfile
✔	6SEF	10154	2023-04-22	2019-07-29	3.7	4.25	—	3.6	0.007	0.85	0.0	0.05	27.92	0.00	2.225	4.94	0.00	2.7	97.3	0.0	-2.10	0.88	0.84	2.28	3.5	0.005	0.76	0.0	0.04	28.99	0.00	2.071	16.74	0.80	2.9	97.1	0.0	0.58	0.72	0.89	0.85	1.99	11919	751	11	290	0	0	0	logfile
✔	7W0Y	32249	2023-04-25	2021-11-18	3.4	3.42	—	3.4	0.008	0.81	0.0	0.04	17.98	0.01	2.148	11.79	0.22	3.4	96.5	0.1	1.17	0.78	0.85	2.73	3.4	0.002	0.54	0.0	0.04	17.04	0.00	2.142	8.54	0.24	3.3	96.6	0.0	1.18	0.35	0.78	0.86	2.57	68093	8269	68	0	44	0	0	logfile
✔	7Q2X	13783	2023-04-24	2021-10-26	3.0	2.22	—	2.1	0.002	0.55	0.0	0.04	17.41	0.00	2.035	7.69	0.11	2.6	97.4	0.0	2.57	0.74	0.70	1.84	2.0	0.003	0.69	0.0	0.04	20.45	0.00	1.906	10.04	2.31	3.4	96.6	0.0	1.78	1.28	0.77	0.79	2.17	18240	2098	8	72	6	0	0	logfile
✔	7NDA	12281	2023-04-28	2021-01-30	3.3	3.59	—	3.5	0.004	0.63	0.0	0.05	10.98	0.00	2.051	5.34	0.30	4.4	95.3	0.3	-0.16	0.81	0.82	2.59	3.5	0.003	0.68	0.0	0.05	14.04	0.00	2.118	11.18	0.23	3.0	97.0	0.0	-0.05	0.75	0.83	0.86	2.25	27721	3452	23	0	63	0	0	logfile
✔	6TNY	10539	2023-04-25	2019-12-10	3.08	3.41	—	3.1	0.009	1.10	2.0	0.06	17.58	0.01	1.826	7.98	0.83	6.4	93.2	0.3	-3.49	0.83	0.76	2.04	3.1	0.003	0.67	0.0	0.04	18.05	0.00	2.147	8.49	0.24	4.9	95.1	0.0	-0.52	0.75	0.86	0.81	1.93	19726	2399	10	50	3	0	0	logfile

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