Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WAH	32385	2023-04-22	2021-12-14	2.45	2.65	—	2.8	0.002	0.51	0.0	0.04	11.56	0.00	2.239	7.07	0.55	1.7	98.3	0.0	0.28	0.64	0.80	3.72	2.8	0.002	0.53	0.0	0.04	15.46	0.00	2.081	7.50	2.11	2.3	97.7	0.0	0.63	1.00	0.63	0.80	3.25	13217	1473	3	62	4	0	0	logfile
✔	7R44	14266	2023-04-25	2022-02-08	2.4	2.43	—	2.4	0.008	0.81	0.0	0.84	15.16	0.00	1.908	3.31	0.00	2.5	97.5	0.0	0.40	0.70	0.90	6.05	2.5	0.007	1.30	0.0	0.25	16.34	0.00	1.997	4.87	0.60	1.6	98.4	0.0	1.68	0.32	0.70	0.90	5.12	68213	8163	113	0	50	905	0	logfile
✔	6ZG8	11196	2023-04-23	2020-06-18	3.49	2.83	3.28	3.2	0.006	0.69	0.0	0.04	14.97	0.00	2.041	12.31	0.00	3.9	96.1	0.0	0.37	0.52	0.76	2.19	3.2	0.003	0.53	0.0	0.04	16.35	0.00	2.079	9.50	0.39	2.7	97.3	0.0	2.24	0.41	0.52	0.77	1.90	15522	1045	11	0	0	0	7815	logfile
✔	7JRJ	22446	2023-04-26	2020-08-12	3.03	2.86	—	2.8	0.006	0.60	0.0	0.04	11.33	0.00	2.210	5.16	0.04	4.6	95.4	0.0	-2.44	0.75	0.81	3.28	2.6	0.005	0.62	0.0	0.04	14.01	0.00	2.121	5.98	0.13	3.8	96.2	0.0	0.36	0.61	0.77	0.84	2.83	22924	2931	15	0	128	0	0	logfile
✔	8ERR	28559	2023-04-27	2022-10-12	3.1	3.29	3.06	3.3	0.010	1.34	2.0	0.08	10.04	0.01	2.346	2.36	0.88	3.0	96.7	0.3	0.26	0.73	0.78	4.14	3.3	0.003	0.61	0.0	0.05	12.72	0.00	2.119	3.35	0.21	3.0	97.0	0.0	0.79	1.52	0.72	0.76	3.72	25780	3742	13	0	50	0	0	logfile
✔	7WV4	32845	2023-04-27	2022-02-09	3.35	3.68	—	3.6	0.014	1.48	0.0	0.04	18.99	0.08	2.227	7.60	0.00	4.6	95.4	0.0	-1.40	0.79	0.76	2.07	3.4	0.006	1.76	0.0	0.05	20.13	0.02	2.109	19.25	0.20	9.1	90.9	0.0	-2.03	0.94	0.81	0.81	2.15	24490	2636	6	80	80	0	0	logfile
✔	6XS6	22301	2023-04-24	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.003	0.59	0.0	0.04	15.91	0.00	2.160	8.43	0.15	5.1	94.9	0.0	-0.95	0.37	0.57	0.59	2.19	18294	2357	3	0	0	0	0	logfile
✔	8AP9	15562	2023-04-25	2022-08-09	3.7	3.41	3.21	3.4	0.006	0.48	0.0	0.04	9.61	0.00	2.191	2.85	0.40	1.9	98.1	0.0	-0.08	0.57	0.83	3.96	3.4	0.003	0.47	0.0	0.04	13.17	0.00	2.147	3.87	0.00	3.2	96.8	0.0	-1.39	1.39	0.63	0.86	3.40	19658	1285	14	0	1	0	9972	logfile
✔	6KNF	0730	2023-04-20	2019-08-05	2.99	3.24	—	3.2	0.007	0.63	0.0	0.05	15.04	0.00	2.015	7.65	8.82	3.6	96.4	0.0	-2.46	0.83	0.91	4.90	3.2	0.005	0.58	0.0	0.05	15.52	0.00	2.017	7.00	5.51	1.7	98.3	0.0	-0.70	0.93	0.83	0.92	4.37	7749	1002	6	0	6	0	0	logfile
✔	7P04	13143	2023-04-25	2021-06-29	2.85	2.64	—	2.9	0.005	0.66	1.0	0.04	13.94	0.00	2.061	7.70	0.00	3.6	96.4	0.0	-0.21	0.61	0.81	4.06	3.1	0.003	0.54	1.0	0.04	15.76	0.00	2.090	6.77	0.86	3.0	97.0	0.0	0.93	0.80	0.61	0.83	3.29	21543	1353	1	0	2	0	10675	logfile
✔	7WS9	32751	2023-04-29	2022-01-28	2.9	3.48	—	3.3	0.004	0.59	0.0	0.04	13.41	0.00	2.095	7.98	0.03	2.3	97.5	0.2	0.33	0.79	0.84	2.70	3.3	0.003	0.58	0.0	0.04	15.06	0.00	2.190	7.90	1.20	2.2	97.8	0.0	0.76	2.53	0.79	0.87	2.50	29710	3691	22	0	40	0	0	logfile
✔	8EA3	27971	2023-04-20	2022-08-27	3.7	3.91	3.69	3.8	0.013	1.65	12.0	0.09	16.88	0.02	1.162	11.38	0.29	2.4	97.4	0.2	-1.04	0.75	0.70	2.00	3.8	0.003	0.58	0.0	0.04	18.89	0.00	1.926	8.59	0.25	2.5	97.5	0.0	1.54	1.43	0.81	0.82	1.32	55955	5618	44	495	26	0	0	logfile
✔	6QC8	4500	2023-04-23	2018-12-27	4.2	4.28	4.19	4.2	0.008	1.26	0.0	1.03	11.78	0.01	2.069	7.62	0.57	11.9	88.0	0.1	-4.06	0.63	0.76	—	4.2	0.009	1.73	0.0	0.31	13.74	0.01	1.995	19.28	0.04	11.4	88.6	0.0	-1.58	1.73	0.64	0.78	—	65394	8092	58	0	18	0	0	logfile
✔	6ZiT	11229	2023-04-25	2020-06-26	3.49	3.68	4.20	3.5	0.005	0.74	0.0	0.04	15.19	0.01	1.968	23.60	0.00	10.6	89.4	0.0	-1.92	0.49	0.72	0.69	3.5	0.003	0.60	0.0	0.04	16.48	0.00	1.970	12.86	0.28	5.1	94.9	0.0	0.40	0.55	0.49	0.72	0.49	20646	1300	15	0	0	0	10446	logfile
✔	7L85	23222	2023-04-25	2020-12-31	2.9	3.14	2.89	3.1	0.025	1.68	0.0	0.10	9.89	0.01	2.365	2.39	0.00	2.3	97.7	0.0	0.88	0.81	0.89	4.84	3.1	0.005	0.61	0.0	0.05	15.79	0.01	2.156	7.44	1.12	3.2	96.8	0.0	0.92	1.29	0.76	0.90	3.92	20556	2664	24	0	0	0	0	logfile
✔	7NS6	12561	2023-04-22	2021-03-05	3.18	4.09	—	3.2	0.004	0.85	25.0	0.06	13.20	0.00	2.006	12.56	0.00	2.3	97.6	0.1	0.71	0.87	0.81	1.73	3.2	0.002	0.58	0.0	0.04	14.34	0.00	2.115	10.89	0.20	3.2	96.8	0.0	0.28	1.52	0.89	0.86	2.02	55899	7109	20	0	52	0	0	logfile
✔	7WS4	32743	2023-04-27	2022-01-28	3.7	4.11	—	3.9	0.004	0.62	0.0	0.05	13.41	0.00	2.110	9.30	0.00	3.5	96.5	0.0	0.09	0.83	0.85	2.54	3.9	0.007	0.69	0.0	0.05	14.93	0.00	2.105	10.56	0.31	4.4	95.6	0.0	-0.12	0.34	0.84	0.87	2.50	26566	3327	22	0	38	0	0	logfile
✔	7WP0	32665	2023-04-19	2022-01-22	3.71	3.94	—	3.9	0.007	0.94	0.0	0.06	14.49	0.01	2.281	5.81	0.59	8.5	91.5	0.0	-4.57	0.65	0.80	3.41	3.9	0.003	0.66	0.0	0.04	15.95	0.00	2.286	10.65	0.00	8.0	92.0	0.0	-1.94	0.56	0.64	0.79	2.56	3174	407	3	0	1	0	0	logfile
✔	7PK6	13466	2023-04-24	2021-08-25	2.15	2.27	2.23	2.3	0.005	0.60	0.0	0.05	17.06	0.01	1.864	4.25	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.003	0.55	0.0	0.04	17.46	0.00	2.152	6.42	2.12	2.2	97.8	0.0	1.53	0.87	0.78	0.88	4.85	120580	15100	20	0	0	0	0	logfile
✔	6T1Y	10363	2023-04-23	2019-10-07	3.3	3.22	3.26	3.3	0.017	1.60	0.0	0.08	12.35	0.01	1.332	2.81	0.32	5.2	94.8	0.0	-1.04	0.71	0.84	3.29	3.3	0.003	0.68	0.0	0.04	15.87	0.00	2.031	8.52	0.25	2.3	97.7	0.0	0.34	1.77	0.68	0.85	2.87	14915	1885	15	0	15	0	0	logfile

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