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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6S8D | 10118 | 2022-12-12 | 2019-07-09 | 3.49 | 3.72 | 3.62 | 3.7 | 0.006 | 0.84 | 0.0 | 0.09 | 13.77 | 0.01 | 2.255 | 10.39 | 2.56 | 4.2 | 95.6 | 0.2 | -0.87 | 0.78 | 0.81 | 3.80 | 3.7 | 0.005 | 0.72 | 0.0 | 0.05 | 15.00 | 0.00 | 2.156 | 8.89 | 0.62 | 5.3 | 94.7 | 0.0 | -0.50 | 0.53 | 0.79 | 0.87 | 3.39 | 12267 | 1584 | 15 | 0 | 6 | 0 | 0 | logfile |
✔ | 6NYY | 0552 | 2022-12-14 | 2019-02-12 | 3.0 | 2.29 | 2.99 | 3.1 | 0.007 | 0.90 | 0.0 | 0.05 | 10.08 | 0.01 | 0.952 | 5.97 | 0.05 | 5.9 | 94.1 | 0.0 | -5.40 | 0.70 | 0.66 | 3.17 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 16.24 | 0.00 | 1.952 | 9.92 | 2.09 | 4.7 | 95.3 | 0.0 | -0.49 | 1.37 | 0.77 | 0.74 | 2.53 | 19226 | 2894 | 16 | 0 | 13 | 0 | 0 | logfile |
✔ | 6iV6 | 9742 | 2022-12-12 | 2018-12-02 | 3.6 | 3.59 | — | 3.6 | 0.005 | 1.04 | 0.0 | 0.05 | 16.90 | 0.01 | 2.261 | 5.02 | 0.61 | 6.7 | 93.3 | 0.1 | -5.17 | 0.64 | 0.75 | 2.10 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 18.18 | 0.00 | 2.174 | 8.71 | 0.40 | 8.8 | 91.2 | 0.0 | -2.40 | 0.91 | 0.68 | 0.75 | 2.12 | 10158 | 1209 | 2 | 26 | 0 | 0 | 0 | logfile |
✔ | 6F41 | 4181 | 2022-12-22 | 2017-11-29 | 4.3 | 4.42 | — | 4.3 | 0.002 | 0.64 | 0.0 | 0.04 | 15.14 | 0.01 | 2.195 | 7.66 | 0.80 | 9.9 | 90.1 | 0.1 | -4.92 | 0.82 | 0.78 | — | 4.3 | 0.003 | 0.76 | 0.0 | 0.04 | 15.49 | 0.00 | 2.047 | 12.28 | 0.04 | 8.1 | 91.9 | 0.0 | -2.30 | 1.54 | 0.84 | 0.81 | — | 47788 | 5667 | 29 | 132 | 7 | 0 | 0 | logfile |
✔ | 6P7X | 20272 | 2022-12-16 | 2019-06-06 | 4.3 | 5.62 | 4.32 | 4.2 | 0.007 | 1.01 | 2.0 | 0.05 | 15.45 | 0.01 | 1.495 | 10.71 | 1.27 | 10.3 | 89.4 | 0.3 | -3.84 | 0.84 | 0.63 | — | 4.3 | 0.003 | 0.61 | 0.0 | 0.04 | 14.02 | 0.00 | 1.837 | 13.43 | 0.00 | 9.3 | 90.7 | 0.0 | -0.41 | 0.86 | 0.88 | 0.75 | — | 30537 | 1833 | 5 | 0 | 0 | 0 | 15288 | logfile |
✔ | 6RTB | 4996 | 2022-12-11 | 2019-05-22 | 3.46 | 3.57 | — | 3.5 | 0.009 | 1.23 | 0.0 | 0.07 | 15.08 | 0.01 | 2.122 | 6.27 | 2.61 | 18.9 | 80.9 | 0.2 | -4.64 | 0.62 | 0.79 | 4.22 | 3.5 | 0.006 | 0.85 | 0.0 | 0.05 | 16.16 | 0.00 | 2.105 | 17.65 | 0.65 | 22.1 | 77.9 | 0.0 | -4.34 | 0.89 | 0.62 | 0.80 | 4.18 | 4681 | 699 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RMG | 4936 | 2022-12-14 | 2019-05-06 | 3.4 | 3.70 | — | 3.6 | 0.011 | 1.44 | 0.0 | 0.08 | 11.91 | 0.01 | 2.042 | 4.25 | 0.10 | 8.7 | 91.3 | 0.0 | -3.98 | 0.72 | 0.80 | 3.37 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.38 | 0.00 | 1.894 | 10.62 | 0.40 | 7.2 | 92.8 | 0.0 | 0.21 | 0.84 | 0.77 | 0.86 | 2.87 | 19137 | 1176 | 5 | 0 | 19 | 0 | 9327 | logfile |
✔ | 6DJo | 7938 | 2022-12-12 | 2018-05-25 | 3.6 | 3.75 | — | 3.7 | 0.009 | 0.94 | 0.0 | 0.06 | 10.85 | 0.01 | 2.053 | 6.86 | 0.96 | 4.9 | 95.1 | 0.0 | -4.76 | 0.69 | 0.84 | 3.42 | 3.6 | 0.005 | 0.70 | 0.0 | 0.05 | 15.01 | 0.00 | 1.897 | 9.05 | 0.56 | 5.9 | 94.1 | 0.0 | -1.71 | 2.19 | 0.70 | 0.85 | 2.85 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6N2Y | 9333 | 2022-12-19 | 2018-11-14 | 3.0 | 3.23 | 2.99 | 3.2 | 0.009 | 1.19 | 14.0 | 0.07 | 10.48 | 0.01 | 0.765 | 9.02 | 0.40 | 3.4 | 96.5 | 0.1 | -2.50 | 0.62 | 0.74 | 4.06 | 3.2 | 0.003 | 0.66 | 0.0 | 0.04 | 14.96 | 0.00 | 1.989 | 11.29 | 2.14 | 3.5 | 96.4 | 0.0 | 0.79 | 1.20 | 0.68 | 0.84 | 3.39 | 35043 | 4696 | 27 | 0 | 26 | 0 | 0 | logfile |
✔ | 6CG0 | 7470 | 2022-12-14 | 2018-02-19 | 3.17 | 3.69 | — | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 20.01 | 0.00 | 2.205 | 15.37 | 4.08 | 2.5 | 97.4 | 0.1 | -2.47 | 0.91 | 0.85 | 3.15 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 20.30 | 0.00 | 2.133 | 8.07 | 0.12 | 2.0 | 98.0 | 0.0 | 0.50 | 0.53 | 0.92 | 0.88 | 2.66 | 20080 | 1989 | 13 | 212 | 4 | 0 | 0 | logfile |
✔ | 6PPU | 20447 | 2022-12-12 | 2019-07-08 | 3.5 | 3.56 | — | 3.5 | 0.009 | 1.18 | 2.0 | 0.07 | 15.05 | 0.01 | 1.855 | 11.03 | 3.10 | 7.9 | 92.1 | 0.0 | -5.80 | 0.76 | 0.84 | 3.72 | 3.5 | 0.002 | 0.65 | 0.0 | 0.04 | 16.86 | 0.00 | 2.175 | 6.59 | 0.12 | 4.2 | 95.8 | 0.0 | -1.93 | 0.59 | 0.76 | 0.84 | 2.60 | 10104 | 1302 | 4 | 29 | 53 | 0 | 0 | logfile |
✔ | 6V1i | 21012 | 2022-12-12 | 2019-11-20 | 3.8 | 4.10 | 3.68 | 3.8 | 0.007 | 0.90 | 0.0 | 0.04 | 9.43 | 0.01 | 2.433 | 1.82 | 0.00 | 1.5 | 98.5 | 0.0 | -3.88 | 0.93 | 0.89 | 1.99 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 14.45 | 0.00 | 2.239 | 7.87 | 0.47 | 1.6 | 98.4 | 0.0 | 4.72 | 0.82 | 0.93 | 0.90 | 1.19 | 9711 | 1233 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6T8G | 10400 | 2022-12-14 | 2019-10-24 | 4.34 | 4.41 | — | 4.3 | 0.008 | 1.12 | 0.0 | 0.06 | 13.12 | 0.01 | 2.228 | 7.19 | 0.15 | 10.2 | 89.8 | 0.0 | -4.29 | 0.81 | 0.83 | — | 4.3 | 0.005 | 0.86 | 0.0 | 0.05 | 14.32 | 0.01 | 2.063 | 19.07 | 0.00 | 7.6 | 92.4 | 0.0 | -0.98 | 1.37 | 0.82 | 0.83 | — | 18875 | 2367 | 14 | 32 | 6 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2022-12-12 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.95 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.004 | 0.80 | 1.0 | 0.05 | 11.72 | 0.00 | 2.042 | 24.03 | 0.00 | 4.6 | 95.3 | 0.0 | -0.71 | 1.94 | 0.82 | 0.74 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KU9 | 0776 | 2022-12-12 | 2019-08-31 | 2.67 | 2.78 | 2.55 | 2.7 | 0.005 | 0.90 | 0.0 | 0.06 | 14.50 | 0.01 | 2.258 | 3.94 | 5.48 | 6.5 | 93.1 | 0.3 | -2.36 | 0.76 | 0.86 | 3.72 | 2.7 | 0.004 | 0.64 | 0.0 | 0.05 | 15.58 | 0.00 | 2.224 | 5.62 | 2.62 | 4.8 | 95.2 | 0.0 | -0.74 | 1.63 | 0.76 | 0.88 | 3.58 | 11739 | 1461 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PSY | 20468 | 2022-12-12 | 2019-07-14 | 2.8 | 2.96 | — | 3.0 | 0.007 | 1.08 | 0.0 | 0.06 | 11.32 | 0.01 | 2.256 | 8.88 | 0.40 | 8.3 | 91.7 | 0.0 | -4.87 | 0.59 | 0.74 | 3.67 | 3.0 | 0.004 | 0.68 | 0.0 | 0.04 | 16.61 | 0.00 | 2.184 | 14.29 | 2.85 | 7.4 | 92.6 | 0.0 | -1.24 | 1.26 | 0.64 | 0.80 | 3.07 | 11540 | 1429 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 5K7L | 8215 | 2022-12-16 | 2016-05-26 | 3.78 | 6.86 | — | 3.4 | 0.008 | 1.37 | 25.0 | 0.07 | 13.26 | 0.00 | 2.314 | 7.95 | 0.35 | 7.3 | 92.6 | 0.1 | -0.20 | 0.69 | 0.55 | 1.02 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 13.82 | 0.00 | 2.163 | 9.16 | 0.00 | 3.5 | 96.5 | 0.0 | 1.54 | 0.60 | 0.70 | 0.68 | 0.78 | 30870 | 4215 | 15 | 0 | 10 | 0 | 0 | logfile |
✔ | 6RLB | 4918 | 2022-12-14 | 2019-05-01 | 4.5 | 4.85 | 4.49 | 4.3 | 0.007 | 0.95 | 0.0 | 0.06 | 4.70 | 0.00 | 2.082 | 0.71 | 0.00 | 4.0 | 95.9 | 0.0 | -1.08 | 0.80 | 0.63 | — | 4.2 | 0.003 | 0.72 | 0.0 | 0.04 | 5.19 | 0.00 | 2.243 | 3.44 | 0.00 | 11.3 | 88.6 | 0.0 | -0.76 | 1.85 | 0.86 | 0.66 | — | 20407 | 4122 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PSX | 20467 | 2022-12-12 | 2019-07-14 | 3.3 | 3.50 | — | 3.4 | 0.006 | 1.06 | 0.0 | 0.06 | 11.04 | 0.01 | 2.243 | 8.17 | 0.41 | 8.5 | 91.5 | 0.0 | -5.01 | 0.64 | 0.74 | 2.94 | 3.4 | 0.004 | 0.69 | 0.0 | 0.04 | 14.78 | 0.00 | 2.082 | 13.85 | 0.58 | 7.8 | 92.2 | 0.0 | -1.49 | 1.32 | 0.68 | 0.80 | 2.29 | 11074 | 1372 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 5YU8 | 6844 | 2022-12-14 | 2017-11-21 | 3.8 | 3.92 | — | 3.9 | 0.014 | 1.86 | 0.0 | 0.09 | 12.63 | 0.02 | 1.834 | 0.30 | 0.25 | 2.5 | 97.3 | 0.2 | -3.36 | 0.62 | 0.83 | 3.41 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 15.64 | 0.00 | 1.953 | 6.27 | 0.15 | 2.1 | 97.9 | 0.0 | -0.76 | 1.32 | 0.61 | 0.86 | 2.20 | 18147 | 2292 | 13 | 0 | 10 | 0 | 0 | logfile |