Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S8D	10118	2022-12-12	2019-07-09	3.49	3.72	3.62	3.7	0.006	0.84	0.0	0.09	13.77	0.01	2.255	10.39	2.56	4.2	95.6	0.2	-0.87	0.78	0.81	3.80	3.7	0.005	0.72	0.0	0.05	15.00	0.00	2.156	8.89	0.62	5.3	94.7	0.0	-0.50	0.53	0.79	0.87	3.39	12267	1584	15	0	6	0	0	logfile
✔	6NYY	0552	2022-12-14	2019-02-12	3.0	2.29	2.99	3.1	0.007	0.90	0.0	0.05	10.08	0.01	0.952	5.97	0.05	5.9	94.1	0.0	-5.40	0.70	0.66	3.17	3.1	0.004	0.68	0.0	0.04	16.24	0.00	1.952	9.92	2.09	4.7	95.3	0.0	-0.49	1.37	0.77	0.74	2.53	19226	2894	16	0	13	0	0	logfile
✔	6iV6	9742	2022-12-12	2018-12-02	3.6	3.59	—	3.6	0.005	1.04	0.0	0.05	16.90	0.01	2.261	5.02	0.61	6.7	93.3	0.1	-5.17	0.64	0.75	2.10	3.6	0.003	0.71	0.0	0.04	18.18	0.00	2.174	8.71	0.40	8.8	91.2	0.0	-2.40	0.91	0.68	0.75	2.12	10158	1209	2	26	0	0	0	logfile
✔	6F41	4181	2022-12-22	2017-11-29	4.3	4.42	—	4.3	0.002	0.64	0.0	0.04	15.14	0.01	2.195	7.66	0.80	9.9	90.1	0.1	-4.92	0.82	0.78	—	4.3	0.003	0.76	0.0	0.04	15.49	0.00	2.047	12.28	0.04	8.1	91.9	0.0	-2.30	1.54	0.84	0.81	—	47788	5667	29	132	7	0	0	logfile
✔	6P7X	20272	2022-12-16	2019-06-06	4.3	5.62	4.32	4.2	0.007	1.01	2.0	0.05	15.45	0.01	1.495	10.71	1.27	10.3	89.4	0.3	-3.84	0.84	0.63	—	4.3	0.003	0.61	0.0	0.04	14.02	0.00	1.837	13.43	0.00	9.3	90.7	0.0	-0.41	0.86	0.88	0.75	—	30537	1833	5	0	0	0	15288	logfile
✔	6RTB	4996	2022-12-11	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.006	0.85	0.0	0.05	16.16	0.00	2.105	17.65	0.65	22.1	77.9	0.0	-4.34	0.89	0.62	0.80	4.18	4681	699	10	0	0	0	0	logfile
✔	6RMG	4936	2022-12-14	2019-05-06	3.4	3.70	—	3.6	0.011	1.44	0.0	0.08	11.91	0.01	2.042	4.25	0.10	8.7	91.3	0.0	-3.98	0.72	0.80	3.37	3.6	0.003	0.60	0.0	0.04	14.38	0.00	1.894	10.62	0.40	7.2	92.8	0.0	0.21	0.84	0.77	0.86	2.87	19137	1176	5	0	19	0	9327	logfile
✔	6DJo	7938	2022-12-12	2018-05-25	3.6	3.75	—	3.7	0.009	0.94	0.0	0.06	10.85	0.01	2.053	6.86	0.96	4.9	95.1	0.0	-4.76	0.69	0.84	3.42	3.6	0.005	0.70	0.0	0.05	15.01	0.00	1.897	9.05	0.56	5.9	94.1	0.0	-1.71	2.19	0.70	0.85	2.85	11748	1488	8	0	8	0	0	logfile
✔	6N2Y	9333	2022-12-19	2018-11-14	3.0	3.23	2.99	3.2	0.009	1.19	14.0	0.07	10.48	0.01	0.765	9.02	0.40	3.4	96.5	0.1	-2.50	0.62	0.74	4.06	3.2	0.003	0.66	0.0	0.04	14.96	0.00	1.989	11.29	2.14	3.5	96.4	0.0	0.79	1.20	0.68	0.84	3.39	35043	4696	27	0	26	0	0	logfile
✔	6CG0	7470	2022-12-14	2018-02-19	3.17	3.69	—	3.3	0.003	0.60	0.0	0.04	20.01	0.00	2.205	15.37	4.08	2.5	97.4	0.1	-2.47	0.91	0.85	3.15	3.3	0.002	0.54	0.0	0.04	20.30	0.00	2.133	8.07	0.12	2.0	98.0	0.0	0.50	0.53	0.92	0.88	2.66	20080	1989	13	212	4	0	0	logfile
✔	6PPU	20447	2022-12-12	2019-07-08	3.5	3.56	—	3.5	0.009	1.18	2.0	0.07	15.05	0.01	1.855	11.03	3.10	7.9	92.1	0.0	-5.80	0.76	0.84	3.72	3.5	0.002	0.65	0.0	0.04	16.86	0.00	2.175	6.59	0.12	4.2	95.8	0.0	-1.93	0.59	0.76	0.84	2.60	10104	1302	4	29	53	0	0	logfile
✔	6V1i	21012	2022-12-12	2019-11-20	3.8	4.10	3.68	3.8	0.007	0.90	0.0	0.04	9.43	0.01	2.433	1.82	0.00	1.5	98.5	0.0	-3.88	0.93	0.89	1.99	3.8	0.003	0.68	0.0	0.04	14.45	0.00	2.239	7.87	0.47	1.6	98.4	0.0	4.72	0.82	0.93	0.90	1.19	9711	1233	9	0	0	0	0	logfile
✔	6T8G	10400	2022-12-14	2019-10-24	4.34	4.41	—	4.3	0.008	1.12	0.0	0.06	13.12	0.01	2.228	7.19	0.15	10.2	89.8	0.0	-4.29	0.81	0.83	—	4.3	0.005	0.86	0.0	0.05	14.32	0.01	2.063	19.07	0.00	7.6	92.4	0.0	-0.98	1.37	0.82	0.83	—	18875	2367	14	32	6	0	0	logfile
✔	6KS8	0760	2022-12-12	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.95	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.004	0.80	1.0	0.05	11.72	0.00	2.042	24.03	0.00	4.6	95.3	0.0	-0.71	1.94	0.82	0.74	—	61943	8120	16	0	0	0	0	logfile
✔	6KU9	0776	2022-12-12	2019-08-31	2.67	2.78	2.55	2.7	0.005	0.90	0.0	0.06	14.50	0.01	2.258	3.94	5.48	6.5	93.1	0.3	-2.36	0.76	0.86	3.72	2.7	0.004	0.64	0.0	0.05	15.58	0.00	2.224	5.62	2.62	4.8	95.2	0.0	-0.74	1.63	0.76	0.88	3.58	11739	1461	3	0	0	0	0	logfile
✔	6PSY	20468	2022-12-12	2019-07-14	2.8	2.96	—	3.0	0.007	1.08	0.0	0.06	11.32	0.01	2.256	8.88	0.40	8.3	91.7	0.0	-4.87	0.59	0.74	3.67	3.0	0.004	0.68	0.0	0.04	16.61	0.00	2.184	14.29	2.85	7.4	92.6	0.0	-1.24	1.26	0.64	0.80	3.07	11540	1429	4	0	4	0	0	logfile
✔	5K7L	8215	2022-12-16	2016-05-26	3.78	6.86	—	3.4	0.008	1.37	25.0	0.07	13.26	0.00	2.314	7.95	0.35	7.3	92.6	0.1	-0.20	0.69	0.55	1.02	3.5	0.003	0.62	0.0	0.04	13.82	0.00	2.163	9.16	0.00	3.5	96.5	0.0	1.54	0.60	0.70	0.68	0.78	30870	4215	15	0	10	0	0	logfile
✔	6RLB	4918	2022-12-14	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.2	0.003	0.72	0.0	0.04	5.19	0.00	2.243	3.44	0.00	11.3	88.6	0.0	-0.76	1.85	0.86	0.66	—	20407	4122	14	0	0	0	0	logfile
✔	6PSX	20467	2022-12-12	2019-07-14	3.3	3.50	—	3.4	0.006	1.06	0.0	0.06	11.04	0.01	2.243	8.17	0.41	8.5	91.5	0.0	-5.01	0.64	0.74	2.94	3.4	0.004	0.69	0.0	0.04	14.78	0.00	2.082	13.85	0.58	7.8	92.2	0.0	-1.49	1.32	0.68	0.80	2.29	11074	1372	4	0	4	0	0	logfile
✔	5YU8	6844	2022-12-14	2017-11-21	3.8	3.92	—	3.9	0.014	1.86	0.0	0.09	12.63	0.02	1.834	0.30	0.25	2.5	97.3	0.2	-3.36	0.62	0.83	3.41	3.9	0.004	0.69	0.0	0.04	15.64	0.00	1.953	6.27	0.15	2.1	97.9	0.0	-0.76	1.32	0.61	0.86	2.20	18147	2292	13	0	10	0	0	logfile

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