Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CZB	30508	2022-07-03	2020-09-07	3.8	4.14	—	4.1	0.005	1.12	0.0	0.06	15.72	0.01	2.360	4.78	0.47	12.5	87.5	0.0	-4.95	0.56	0.80	2.30	4.1	0.003	0.91	0.0	0.05	17.03	0.00	2.245	11.15	0.94	10.8	89.2	0.0	-1.60	1.39	0.56	0.80	1.78	6304	776	4	0	0	0	0	logfile
✔	7BWM	30233	2022-07-04	2020-04-15	2.9	2.97	—	2.9	0.005	0.78	0.0	0.05	14.21	0.00	2.048	7.48	7.21	5.8	94.0	0.3	-3.28	0.76	0.85	4.49	2.9	0.002	0.61	0.0	0.04	15.57	0.00	2.132	6.73	2.05	4.9	95.1	0.0	-0.79	1.13	0.77	0.85	3.39	9532	1219	1	0	0	0	0	logfile
✔	7K45	22660	2022-07-02	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.41	0.0	0.08	9.47	0.01	2.568	0.35	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.020	1.45	1.0	0.06	14.84	0.01	2.277	8.49	0.00	3.2	96.8	0.0	0.06	1.30	0.80	0.80	2.81	3038	419	4	0	2	0	0	logfile
✔	6XE9	22145	2022-07-05	2020-06-12	4.3	5.05	4.38	4.4	0.003	0.50	0.0	0.04	14.92	0.00	2.096	21.27	0.77	5.4	94.6	0.0	-1.78	0.92	0.82	—	4.4	0.005	0.67	0.0	0.04	14.61	0.00	2.020	29.42	0.10	6.6	93.4	0.0	0.49	1.45	0.92	0.83	—	22081	2949	6	0	0	0	0	logfile
✔	7JZH	22531	2022-07-04	2020-09-02	3.59	3.46	—	3.5	0.006	0.96	4.0	0.06	20.55	0.01	2.095	16.88	16.34	8.7	91.3	0.0	-3.42	0.56	0.73	1.23	3.6	0.009	1.07	0.0	0.04	19.38	0.01	1.637	11.76	0.14	4.4	95.6	0.0	-0.30	1.63	0.59	0.73	1.10	20328	2562	6	0	0	0	0	logfile
✔	7JZ3	22529	2022-07-03	2020-09-01	2.56	2.99	—	3.0	0.003	0.62	0.0	0.05	13.64	0.00	2.211	10.63	1.09	5.8	94.2	0.0	-2.54	0.51	0.62	2.00	2.9	0.008	0.98	0.0	0.05	16.95	0.01	2.004	19.02	6.55	9.6	90.4	0.0	-2.34	1.64	0.47	0.65	1.40	8142	1038	3	0	0	0	0	logfile
✔	7BBH	12130	2022-07-05	2020-12-17	2.9	3.12	3.00	3.1	0.005	0.71	0.0	0.05	12.20	0.01	2.270	3.32	0.86	3.9	96.1	0.0	-0.97	0.78	0.83	3.43	3.1	0.003	0.60	0.0	0.04	15.37	0.00	2.164	3.67	1.69	3.5	96.5	0.0	-0.08	4.35	0.78	0.84	3.00	25827	3189	18	0	69	0	0	logfile
✔	6WVT	21925	2022-07-05	2020-05-06	3.56	3.74	—	3.7	0.007	0.96	0.0	0.05	17.66	0.01	2.106	6.53	5.29	3.8	96.2	0.0	-3.51	0.73	0.83	2.25	3.7	0.003	0.68	0.0	0.04	17.47	0.00	1.997	10.73	0.73	3.4	96.6	0.0	0.02	1.14	0.73	0.84	2.02	25248	3240	18	0	12	0	0	logfile
✔	6RBG	4798	2022-07-04	2019-04-10	3.0	3.55	—	3.4	0.004	0.89	0.0	0.05	14.50	0.00	2.407	3.44	0.38	2.0	98.0	0.0	-6.39	0.67	0.80	3.37	3.4	0.002	0.63	0.0	0.04	17.29	0.00	2.160	4.94	1.24	1.3	98.7	0.0	0.69	0.57	0.70	0.83	2.57	19336	2464	8	0	0	0	0	logfile
✔	6XMF	22257	2022-07-03	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.82	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.72	0.00	2.149	15.78	0.20	9.8	90.2	0.0	-0.48	0.47	0.71	0.76	2.71	7382	627	3	109	1	0	0	logfile
✔	6ZY9	11555	2022-07-04	2020-07-30	3.3	3.42	—	3.5	0.004	0.81	0.0	0.05	12.79	0.01	2.174	2.48	0.25	4.7	95.3	0.0	-5.76	0.62	0.71	1.14	3.4	0.006	0.88	0.0	0.04	15.32	0.01	2.039	6.85	0.13	4.3	95.7	0.0	-1.34	0.68	0.65	0.80	1.00	14973	1985	14	0	4	0	0	logfile
✔	6ZY3	11548	2022-07-04	2020-07-30	3.3	3.38	—	3.4	0.003	0.70	0.0	0.04	12.97	0.00	2.332	3.18	0.18	4.8	95.2	0.0	-5.92	0.66	0.74	1.69	3.3	0.006	0.83	0.0	0.04	15.06	0.00	1.607	6.92	0.06	5.0	95.0	0.0	-1.47	0.62	0.70	0.82	1.78	15770	2071	12	0	1	0	0	logfile
✔	7CZ6	30507	2022-07-03	2020-09-07	4.1	4.07	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	53.34	0.00	8.1	91.9	0.0	-1.66	0.61	0.58	—	4.1	0.004	0.82	0.0	0.05	10.87	0.01	2.091	15.47	0.00	6.2	93.8	0.0	-1.99	0.85	0.61	0.72	—	5442	756	6	0	0	0	0	logfile
✔	6ZoJ	11320	2022-07-05	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	14.31	0.00	1.694	4.49	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.007	0.69	0.0	0.04	16.02	0.01	1.068	5.53	2.64	3.5	96.5	0.0	0.48	2.45	0.81	0.87	3.31	75783	4914	45	1704	169	0	0	logfile
✔	7KY7	23070	2022-07-03	2020-12-07	3.08	3.38	—	3.3	0.004	0.69	0.0	0.05	15.18	0.00	1.705	14.99	1.01	7.0	92.9	0.1	-3.55	0.70	0.81	2.28	3.3	0.003	0.60	0.0	0.04	16.39	0.00	1.968	11.45	0.18	6.3	93.7	0.0	-1.18	1.11	0.68	0.81	2.30	10294	1247	8	0	17	0	0	logfile
✔	7K3A	22654	2022-07-05	2020-09-10	4.2	4.49	—	4.2	0.004	0.73	0.0	0.05	12.62	0.00	2.053	13.29	0.17	5.1	94.9	0.0	-0.62	0.85	0.73	—	4.2	0.004	0.70	0.0	0.05	12.72	0.00	2.148	19.29	0.00	5.1	94.9	0.0	-0.69	2.08	0.91	0.83	—	21426	2691	27	0	54	0	0	logfile
✔	6XRE	22294	2022-07-04	2020-07-12	4.6	7.52	—	4.5	0.011	1.16	1.0	0.07	10.73	0.01	0.771	5.43	0.24	7.9	91.5	0.6	-3.72	0.62	0.29	—	4.5	0.004	0.74	0.0	0.04	11.94	0.00	1.838	18.75	0.00	13.9	86.0	0.0	-2.98	0.91	0.85	0.65	—	68542	4289	18	0	9	0	34248	logfile
✔	7DK6	30704	2022-07-06	2020-11-23	4.3	3.67	—	3.5	0.003	0.54	0.0	0.04	7.79	0.00	2.096	1.26	0.06	3.0	97.0	0.0	-3.17	0.59	0.45	—	3.5	0.005	0.88	1.0	0.05	12.18	0.01	2.051	17.99	0.00	6.1	93.9	0.0	-1.33	1.81	0.73	0.64	—	31448	4042	7	0	0	0	0	logfile
✔	6WYK	21967	2022-07-02	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.005	0.89	0.0	0.05	16.27	0.01	2.217	12.88	0.31	1.9	98.1	0.0	1.71	0.87	0.61	0.77	—	3083	415	1	0	0	0	0	logfile
✔	7C17	30268	2022-07-06	2020-05-02	4.22	4.29	—	4.2	0.003	0.73	0.0	0.05	16.32	0.01	1.995	7.56	0.21	5.7	94.3	0.0	-4.63	0.79	0.69	—	4.2	0.004	0.76	0.0	0.04	16.51	0.00	2.059	22.84	0.06	8.0	92.0	0.0	-1.77	0.89	0.83	0.77	—	33061	3995	12	104	4	0	0	logfile

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