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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5oDV | 3785 | 2024-03-18 | 2017-07-06 | 4.0 | 4.43 | 4.14 | 4.4 | 0.008 | 0.80 | 0.0 | 0.05 | 12.01 | 0.01 | 1.941 | 6.34 | 0.00 | 13.2 | 86.8 | 0.0 | -4.48 | 0.50 | 0.73 | — | 4.4 | 0.004 | 0.65 | 0.0 | 0.04 | 16.98 | 0.00 | 1.934 | 9.12 | 2.57 | 8.2 | 91.8 | 0.0 | -2.16 | 1.09 | 0.53 | 0.82 | — | 82656 | 4968 | 48 | 120 | 0 | 0 | 40368 | logfile |
✔ | 7oZG | 13123 | 2024-03-10 | 2021-06-28 | 3.3 | 3.21 | 2.71 | 3.6 | 0.023 | 1.83 | 0.0 | 0.10 | 12.75 | 0.01 | 2.254 | 17.09 | 0.00 | 8.7 | 91.3 | 0.0 | -4.01 | 0.40 | 0.73 | 3.72 | 3.7 | 0.006 | 0.82 | 0.0 | 0.05 | 15.66 | 0.00 | 2.270 | 17.98 | 10.82 | 17.5 | 82.5 | 0.0 | -4.72 | 1.62 | 0.35 | 0.69 | 4.53 | 4960 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P6D | 13226 | 2024-03-10 | 2021-07-15 | 3.3 | 3.43 | 3.17 | 3.5 | 0.003 | 0.66 | 0.0 | 0.05 | 11.41 | 0.00 | 2.575 | 2.25 | 0.00 | 2.7 | 97.3 | 0.0 | -2.54 | 0.55 | 0.77 | 3.72 | 3.5 | 0.006 | 0.73 | 0.0 | 0.05 | 13.80 | 0.00 | 2.088 | 4.96 | 4.65 | 11.7 | 88.3 | 0.0 | -3.17 | 2.42 | 0.47 | 0.83 | 4.41 | 4340 | 575 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XJX | 33236 | 2024-03-10 | 2022-04-18 | 2.7 | 2.78 | 1.76 | 2.9 | 0.008 | 0.81 | 0.0 | 0.06 | 12.77 | 0.00 | 2.438 | 12.63 | 0.00 | 16.4 | 83.6 | 0.0 | -5.02 | 0.48 | 0.81 | 4.92 | 2.9 | 0.004 | 0.77 | 0.0 | 0.05 | 14.58 | 0.00 | 2.392 | 9.10 | 4.44 | 12.3 | 87.7 | 0.0 | -3.52 | 1.16 | 0.45 | 0.81 | 4.78 | 2628 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Xo2 | 33334 | 2024-03-10 | 2022-04-30 | 3.0 | 2.83 | 2.60 | 2.9 | 0.001 | 0.38 | 0.0 | 0.05 | 18.12 | 0.00 | 2.586 | 6.10 | 0.00 | 5.0 | 95.0 | 0.0 | -0.89 | 0.49 | 0.87 | 6.67 | 2.9 | 0.009 | 0.69 | 0.0 | 0.06 | 19.10 | 0.00 | 2.285 | 4.76 | 4.65 | 9.4 | 90.6 | 0.0 | -1.72 | 1.12 | 0.51 | 0.89 | 6.72 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oG6 | 12879 | 2024-03-10 | 2021-05-06 | 3.3 | 3.47 | — | 2.9 | 0.008 | 0.82 | 0.0 | 0.04 | 18.38 | 0.01 | 2.325 | 7.36 | 6.10 | 9.6 | 90.4 | 0.0 | -4.47 | 0.28 | 0.82 | 2.77 | 2.9 | 0.003 | 0.62 | 0.0 | 0.04 | 17.37 | 0.00 | 2.176 | 10.24 | 2.44 | 6.6 | 93.4 | 0.0 | -0.62 | 0.54 | 0.27 | 0.84 | 2.90 | 1602 | 199 | 2 | 5 | 0 | 0 | 0 | logfile |
✔ | 8ADS | 15369 | 2024-03-10 | 2022-07-11 | 3.05 | 2.91 | 2.80 | 3.2 | 0.004 | 0.49 | 0.0 | 0.06 | 13.38 | 0.00 | 2.218 | 11.86 | 0.00 | 1.4 | 98.6 | 0.0 | -3.19 | 0.48 | 0.79 | 5.21 | 3.2 | 0.005 | 0.65 | 0.0 | 0.05 | 16.29 | 0.00 | 2.125 | 11.86 | 4.62 | 2.5 | 97.5 | 0.0 | -3.55 | 0.55 | 0.50 | 0.82 | 5.94 | 5170 | 750 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QVC | 14174 | 2024-03-10 | 2022-01-21 | 2.64 | 2.62 | 2.62 | 2.6 | 0.012 | 2.09 | 10.0 | 0.12 | 15.49 | 0.01 | 2.525 | 0.00 | 0.53 | 5.8 | 94.2 | 0.0 | -2.45 | 0.43 | 0.86 | 7.41 | 2.7 | 0.005 | 0.74 | 0.0 | 0.06 | 18.06 | 0.00 | 2.133 | 9.23 | 4.23 | 5.5 | 94.5 | 0.0 | -2.30 | 1.00 | 0.42 | 0.89 | 5.81 | 3255 | 405 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q8B | 13863 | 2024-03-16 | 2021-11-11 | 3.3 | 3.20 | 3.22 | 3.2 | 0.004 | 0.50 | 0.0 | 0.05 | 10.85 | 0.00 | 2.012 | 3.76 | 0.00 | 2.7 | 97.3 | 0.0 | 1.33 | 0.70 | 0.86 | 4.06 | 3.1 | 0.003 | 0.56 | 0.0 | 0.05 | 15.10 | 0.00 | 2.071 | 6.21 | 0.86 | 2.2 | 97.8 | 0.0 | 0.74 | 0.48 | 0.71 | 0.89 | 3.75 | 14640 | 1850 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 7P6E | 13227 | 2024-03-11 | 2021-07-15 | 3.4 | 3.40 | 3.47 | 4.1 | 0.009 | 0.96 | 0.0 | 0.06 | 8.26 | 0.01 | 2.358 | 3.99 | 0.00 | 5.9 | 94.1 | 0.0 | -4.80 | 0.54 | 0.80 | 4.38 | 4.1 | 0.004 | 0.69 | 0.0 | 0.05 | 13.21 | 0.00 | 2.133 | 9.48 | 4.21 | 5.3 | 94.7 | 0.0 | -4.15 | 2.67 | 0.52 | 0.81 | 3.99 | 8090 | 1050 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SSX | 10307 | 2024-03-10 | 2019-09-09 | 2.98 | 3.11 | — | 3.1 | 0.008 | 0.94 | 0.0 | 0.07 | 14.94 | 0.00 | 2.424 | 6.14 | 4.26 | 12.6 | 87.4 | 0.0 | -4.73 | 0.65 | 0.82 | 4.81 | 3.1 | 0.005 | 0.69 | 0.0 | 0.05 | 16.86 | 0.00 | 2.241 | 10.87 | 4.68 | 11.9 | 88.1 | 0.0 | -5.00 | 0.75 | 0.64 | 0.85 | 4.29 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BGS | 16035 | 2024-03-10 | 2022-10-28 | 3.16 | 3.15 | 2.98 | 3.3 | 0.009 | 1.64 | 0.0 | 0.10 | 13.08 | 0.01 | 2.368 | 1.46 | 0.00 | 6.8 | 93.2 | 0.0 | -3.72 | 0.43 | 0.86 | 5.04 | 3.3 | 0.004 | 0.75 | 0.0 | 0.05 | 15.35 | 0.00 | 2.218 | 5.73 | 1.73 | 2.5 | 97.5 | 0.0 | -2.74 | 1.30 | 0.36 | 0.80 | 3.20 | 4018 | 525 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q67 | 13854 | 2024-03-10 | 2021-11-05 | 3.37 | 3.41 | 2.44 | 3.4 | 0.020 | 2.21 | 0.0 | 0.14 | 14.47 | 0.01 | 2.280 | 12.16 | 8.00 | 16.1 | 83.9 | 0.0 | -4.98 | 0.51 | 0.71 | 2.52 | 3.5 | 0.004 | 1.00 | 0.0 | 0.05 | 19.06 | 0.00 | 2.149 | 28.31 | 14.91 | 19.1 | 80.9 | 0.0 | -5.06 | 2.51 | 0.45 | 0.70 | 0.92 | 2618 | 363 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A7P | 15223 | 2024-03-10 | 2022-06-21 | 3.4 | 3.32 | 3.49 | 3.5 | 0.002 | 0.54 | 0.0 | 0.04 | 10.48 | 0.01 | 2.313 | 6.43 | 1.83 | 4.7 | 95.3 | 0.0 | -3.55 | 0.44 | 0.77 | 3.05 | 3.5 | 0.004 | 0.72 | 0.0 | 0.05 | 14.94 | 0.00 | 2.257 | 8.58 | 3.66 | 9.2 | 90.8 | 0.0 | -3.85 | 0.78 | 0.44 | 0.80 | 3.29 | 4320 | 522 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P66 | 13219 | 2024-03-10 | 2021-07-15 | 3.0 | 3.09 | 2.70 | 3.2 | 0.004 | 0.66 | 0.0 | 0.06 | 12.13 | 0.00 | 2.388 | 4.21 | 0.00 | 3.8 | 96.2 | 0.0 | -2.50 | 0.48 | 0.82 | 4.06 | 3.2 | 0.005 | 0.61 | 0.0 | 0.05 | 15.15 | 0.00 | 2.180 | 6.01 | 3.01 | 5.3 | 94.7 | 0.0 | -2.91 | 1.34 | 0.47 | 0.84 | 4.52 | 4060 | 540 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8RED | 19083 | 2024-03-21 | 2023-12-10 | 3.9 | 4.13 | 3.86 | 3.8 | 0.005 | 0.68 | 0.0 | 0.04 | 19.76 | 0.01 | 2.088 | 10.12 | 0.41 | 6.4 | 93.5 | 0.0 | -0.58 | 0.80 | 0.75 | 1.60 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 19.70 | 0.00 | 1.920 | 11.17 | 3.29 | 6.2 | 93.8 | 0.0 | 0.03 | 1.19 | 0.88 | 0.84 | 1.31 | 28878 | 3617 | 10 | 105 | 3 | 0 | 0 | logfile |
✔ | 7PZD | 13727 | 2024-03-20 | 2021-10-12 | 3.6 | 3.77 | — | 3.8 | 0.010 | 1.24 | 0.0 | 0.08 | 16.79 | 0.01 | 2.384 | 6.88 | 1.27 | 5.6 | 94.4 | 0.0 | -3.73 | 0.68 | 0.81 | 1.20 | 3.8 | 0.003 | 0.62 | 0.0 | 0.03 | 18.77 | 0.01 | 2.254 | 7.79 | 1.34 | 4.2 | 95.8 | 0.0 | 1.29 | 1.68 | 0.67 | 0.81 | 0.44 | 13644 | 1656 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A7T | 15225 | 2024-03-10 | 2022-06-21 | 3.0 | 2.93 | 3.07 | 3.2 | 0.003 | 0.46 | 0.0 | 0.04 | 8.48 | 0.00 | 2.302 | 5.04 | 0.00 | 2.8 | 97.2 | 0.0 | -4.48 | 0.39 | 0.85 | 4.72 | 3.2 | 0.005 | 0.67 | 0.0 | 0.04 | 15.85 | 0.00 | 2.226 | 8.96 | 4.29 | 3.5 | 96.5 | 0.0 | -4.03 | 1.15 | 0.43 | 0.89 | 4.90 | 3702 | 444 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DMG | 27536 | 2024-03-17 | 2022-07-08 | 4.4 | 5.39 | 4.50 | 4.6 | 0.029 | 2.33 | 20.0 | 0.12 | 16.95 | 0.01 | 0.312 | 28.72 | 6.80 | 6.0 | 92.3 | 1.7 | -2.43 | 0.79 | 0.61 | — | 4.6 | 0.004 | 0.76 | 0.0 | 0.04 | 13.61 | 0.00 | 1.855 | 87.56 | 0.00 | 6.9 | 93.0 | 0.0 | 0.04 | 2.26 | 0.93 | 0.85 | — | 16844 | 2068 | 4 | 0 | 18 | 0 | 202 | logfile |
✔ | 7Ro4 | 24587 | 2024-03-17 | 2021-07-30 | 4.3 | 4.51 | — | 4.2 | 0.006 | 0.78 | 0.0 | 0.05 | 13.23 | 0.01 | 2.237 | 17.04 | 4.00 | 5.4 | 94.6 | 0.0 | 0.68 | 0.68 | 0.85 | — | 4.2 | 0.004 | 0.79 | 0.0 | 0.05 | 11.04 | 0.01 | 2.091 | 14.04 | 0.01 | 6.0 | 94.0 | 0.0 | 1.87 | 0.59 | 0.68 | 0.85 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |