Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RMi	24572	2023-08-10	2021-07-27	3.2	3.78	3.15	3.7	0.004	0.84	0.0	0.05	12.68	0.01	2.296	4.36	0.00	3.4	96.6	0.0	-1.03	0.69	0.72	2.32	3.7	0.003	0.60	0.0	0.04	14.60	0.00	2.196	8.23	0.57	3.1	96.9	0.0	0.53	1.28	0.66	0.78	2.20	7205	960	6	0	1	0	0	logfile
✔	6N2D	9327	2023-08-10	2018-11-12	3.3	3.50	3.29	3.6	0.008	1.21	0.0	0.07	11.75	0.01	1.610	14.18	0.71	2.6	97.4	0.0	-2.81	0.61	0.78	1.68	3.5	0.005	0.82	0.0	0.05	16.12	0.01	2.115	19.61	1.41	2.2	97.8	0.0	1.77	0.63	0.61	0.80	1.08	7162	993	13	0	0	0	0	logfile
✔	6L3V	0827	2023-08-16	2019-10-15	2.63	2.90	2.72	2.9	0.009	0.92	0.0	0.04	17.16	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.003	0.60	0.0	0.03	16.70	0.00	2.186	2.31	1.41	0.8	99.2	0.0	2.15	3.58	0.59	0.87	2.86	19416	1206	12	0	6	0	9528	logfile
✔	8iP3	35630	2023-08-12	2023-03-14	2.6	3.21	2.64	3.0	0.002	0.42	0.0	0.04	10.76	0.00	2.255	5.46	0.00	1.9	98.1	0.0	3.79	0.76	0.84	3.68	3.0	0.003	0.47	0.0	0.04	13.60	0.00	2.264	6.70	1.06	2.0	98.0	0.0	3.60	0.34	0.71	0.81	3.55	12868	1595	10	0	13	0	0	logfile
✔	6A90	6995	2023-08-12	2018-07-11	2.8	2.90	—	2.9	0.011	1.23	0.0	0.07	11.48	0.01	2.302	3.60	1.75	7.6	92.1	0.3	-5.83	0.60	0.83	3.90	2.9	0.003	0.67	0.0	0.04	15.74	0.00	2.293	5.23	2.36	6.0	94.0	0.0	0.43	1.29	0.62	0.85	2.92	11085	1380	5	0	8	0	0	logfile
✔	6LVB	0988	2023-08-20	2020-02-02	2.8	2.90	2.76	2.9	0.008	0.90	0.0	0.06	9.15	0.01	1.914	2.94	0.27	4.6	95.4	0.0	-2.88	0.80	0.89	6.02	2.9	0.003	0.58	0.0	0.05	14.46	0.00	1.973	5.36	1.02	4.0	96.0	0.0	-0.38	1.20	0.80	0.91	5.02	28276	3544	16	0	4	4	0	logfile
✔	7RFE	24439	2023-08-11	2021-07-14	2.6	2.27	—	2.5	0.013	2.07	13.0	0.10	19.39	0.02	2.500	1.13	2.87	3.5	96.2	0.2	-0.73	0.60	0.78	5.31	2.5	0.004	0.66	0.0	0.04	18.23	0.00	1.877	7.03	1.31	3.2	96.8	0.0	0.82	0.77	0.63	0.82	4.32	58720	3800	16	0	32	0	29200	logfile
✔	8GQ5	34198	2023-08-25	2022-08-29	2.7	3.68	3.11	3.6	0.010	1.10	0.0	0.06	14.18	0.01	2.166	6.28	0.00	6.0	94.0	0.0	-3.24	0.77	0.86	3.12	3.6	0.003	0.72	0.0	0.04	16.04	0.00	2.176	10.10	1.37	5.2	94.8	0.0	0.29	0.55	0.68	0.79	2.52	42592	5424	32	0	0	0	0	logfile
✔	7WCo	32426	2023-08-11	2021-12-20	3.8	3.89	—	3.9	0.008	1.13	0.0	0.06	11.02	0.01	0.599	4.59	0.53	14.2	85.8	0.0	-5.43	0.56	0.85	2.78	3.9	0.004	0.79	0.0	0.05	15.45	0.01	2.183	9.17	0.63	8.8	91.2	0.0	-2.39	1.57	0.56	0.85	2.86	8950	1195	15	0	0	0	0	logfile
✔	7LA4	23245	2023-08-10	2021-01-05	3.3	3.51	—	3.5	0.006	0.84	1.0	0.06	14.95	0.00	2.100	16.95	1.91	9.6	89.9	0.5	-4.02	0.75	0.82	3.50	3.5	0.004	0.65	0.0	0.05	15.85	0.00	2.055	14.00	0.45	8.8	91.2	0.0	-2.85	0.47	0.76	0.84	3.03	8281	1052	10	0	17	4	0	logfile
✔	7V2M	31656	2023-08-10	2021-08-09	3.4	3.28	3.35	3.1	0.008	1.15	3.0	0.11	16.39	0.00	2.232	6.24	0.33	6.5	93.2	0.3	-0.70	0.80	0.86	2.18	3.1	0.005	0.65	0.0	0.04	16.95	0.00	2.055	11.12	0.49	6.9	93.0	0.0	-0.33	0.32	0.80	0.87	2.02	55229	2909	25	1486	2	0	0	logfile
✔	7ZEL	14690	2023-08-13	2022-03-31	2.8	2.97	2.82	3.0	0.003	0.57	0.0	0.04	12.71	0.00	2.126	4.89	0.00	1.6	98.4	0.0	0.27	0.70	0.82	4.19	3.0	0.003	0.52	0.0	0.04	15.96	0.00	2.116	6.53	1.42	2.6	97.4	0.0	1.17	1.16	0.68	0.83	3.63	13334	1654	4	0	4	0	0	logfile
✔	6CS0	7578	2023-08-18	2018-03-19	3.8	3.92	3.84	3.8	0.007	1.01	0.0	0.06	9.26	0.01	2.254	6.77	0.04	7.8	92.2	0.0	-4.10	0.73	0.66	1.18	3.8	0.003	0.70	0.0	0.05	13.19	0.00	2.106	14.92	0.11	7.4	92.6	0.0	-2.21	0.79	0.74	0.67	0.72	25909	3205	25	0	66	0	0	logfile
✔	7W7E	32342	2023-08-10	2021-12-04	3.4	3.51	—	3.9	0.004	0.66	2.0	0.05	14.41	0.00	2.120	8.28	0.32	8.8	91.2	0.0	-1.54	0.68	0.82	2.16	3.9	0.003	0.62	0.0	0.04	16.60	0.00	2.193	9.52	0.22	6.4	93.6	0.0	-0.79	0.99	0.68	0.83	1.83	8524	1090	5	0	1	0	0	logfile
✔	7MZ7	24085	2023-08-15	2021-05-24	3.35	3.57	3.23	3.6	0.013	0.96	0.0	0.06	11.62	0.01	2.046	1.92	0.41	5.7	94.1	0.2	0.21	0.62	0.84	2.91	3.6	0.003	0.66	0.0	0.04	15.42	0.00	2.111	9.08	0.52	6.2	93.8	0.0	0.74	1.81	0.62	0.86	1.85	17889	2180	8	0	5	0	0	logfile
✔	7L2W	23143	2023-08-15	2020-12-17	3.16	3.33	3.09	3.3	0.011	1.03	0.0	0.05	14.26	0.01	2.075	2.37	0.47	5.8	94.2	0.0	0.57	0.64	0.86	2.77	3.3	0.004	0.64	0.0	0.04	15.87	0.00	2.121	7.85	0.16	5.7	94.3	0.0	0.92	3.52	0.64	0.87	2.02	17737	2144	11	0	9	4	0	logfile
✔	7MZD	24090	2023-08-15	2021-05-24	2.9	3.17	2.77	3.2	0.010	0.79	0.0	0.05	10.48	0.01	2.252	1.11	0.59	4.0	96.0	0.0	1.32	0.64	0.88	3.97	3.2	0.004	0.73	0.0	0.04	15.97	0.00	2.137	8.21	1.54	6.1	93.9	0.0	1.41	1.13	0.64	0.90	3.14	17486	2128	12	0	6	4	0	logfile
✔	7YNB	33957	2023-08-13	2022-07-30	3.46	3.65	3.47	3.6	0.005	0.72	0.0	0.05	16.85	0.01	2.127	7.12	1.26	11.0	88.8	0.2	-4.52	0.83	0.87	2.37	3.6	0.003	0.61	0.0	0.04	17.06	0.00	2.154	5.77	0.07	10.4	89.6	0.0	-1.87	1.16	0.84	0.89	2.11	13847	1536	3	66	0	0	0	logfile
✔	7W6P	32331	2023-08-10	2021-12-02	3.47	3.79	—	9.6	0.004	0.70	0.0	0.04	13.78	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.68	0.0	0.04	15.37	0.00	2.199	14.66	0.44	5.7	94.3	0.0	-0.83	1.94	0.31	0.25	0.54	8408	1083	5	0	1	0	0	logfile
✔	6XLB	22238	2023-08-12	2020-06-28	3.8	4.01	—	3.8	0.002	0.43	0.0	0.04	13.65	0.00	2.235	7.33	0.00	2.0	98.0	0.0	-2.43	0.82	0.77	1.14	3.8	0.003	0.70	0.0	0.04	16.05	0.00	2.137	17.34	0.48	3.2	96.8	0.0	-0.32	0.89	0.84	0.81	1.48	11180	1380	4	0	0	0	0	logfile

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