Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6E88	9004	2021-08-11	2018-07-27	4.8	4.77	—	4.7	0.003	0.76	0.0	0.05	11.59	0.01	2.258	7.24	0.27	4.5	95.5	0.0	-4.16	0.72	0.71	—	4.7	0.003	0.69	0.0	0.04	13.27	0.00	2.022	16.58	0.00	4.9	95.1	0.0	-0.54	1.81	0.70	0.69	—	40908	5160	24	6	6	0	0	logfile
✔	6DMo	7964	2021-08-07	2018-06-05	4.1	4.16	—	4.1	0.008	1.27	0.0	0.06	13.66	0.01	1.764	8.90	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.003	0.85	0.0	0.05	13.40	0.00	2.073	14.31	0.00	9.9	90.1	0.0	-0.61	1.86	0.59	0.73	—	7853	982	1	0	7	0	0	logfile
✔	6GTE	0063	2021-08-08	2018-06-18	4.07	3.99	—	3.9	0.009	1.11	0.0	0.06	16.15	0.01	2.232	8.08	0.75	15.6	84.3	0.1	-5.76	0.73	0.71	—	3.9	0.005	0.74	0.0	0.05	16.54	0.00	2.049	17.24	0.00	11.1	88.9	0.0	-3.06	0.89	0.74	0.71	—	10872	1274	4	67	0	0	0	logfile
✔	6NT5	0502	2021-08-07	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.59	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.005	0.71	0.0	0.04	12.83	0.00	2.215	10.35	0.00	3.8	96.2	0.0	1.30	1.19	0.74	0.83	—	4586	584	2	0	0	0	0	logfile
✔	6N2P	9332	2021-08-08	2018-11-13	4.0	4.78	—	4.2	0.009	0.87	0.0	0.04	7.86	0.01	2.203	7.41	0.00	12.8	87.2	0.0	-4.67	0.58	0.72	—	4.2	0.002	0.60	0.0	0.04	11.00	0.00	2.186	6.18	0.00	7.3	92.7	0.0	0.72	1.42	0.60	0.82	—	14570	880	10	0	0	0	7380	logfile
✔	6oRN	20175	2021-08-09	2019-04-30	4.05	4.51	4.01	4.4	0.007	1.05	1.0	0.06	10.66	0.01	2.257	4.29	0.62	7.4	92.4	0.2	-4.42	0.66	0.85	—	4.4	0.003	0.69	0.0	0.05	11.80	0.00	2.210	7.94	0.00	6.5	93.5	0.0	-1.75	0.65	0.66	0.85	—	20338	2418	18	0	101	0	0	logfile
✔	5V4S	8633	2021-08-08	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	2.99	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	4.2	0.003	0.61	0.0	0.04	10.49	0.00	2.215	15.41	0.00	2.9	97.1	0.0	3.19	1.02	0.63	0.76	—	10756	1548	4	0	0	0	0	logfile
✔	6XWo	10633	2021-08-07	2020-01-24	3.39	4.01	—	3.8	0.006	0.69	0.0	0.04	13.23	0.01	2.167	9.83	0.00	6.0	94.0	0.0	-3.53	0.74	0.82	1.64	3.8	0.003	0.66	0.0	0.04	15.00	0.00	2.167	9.58	0.00	2.9	97.1	0.0	1.08	1.17	0.73	0.85	0.96	9555	1281	3	0	0	0	0	logfile
✔	6GTD	0062	2021-08-07	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.66	—	3.9	0.003	0.71	0.0	0.04	19.83	0.00	2.147	11.01	0.00	12.9	87.1	0.0	-2.65	1.04	0.78	0.66	—	6456	1269	4	66	0	0	0	logfile
✔	5X5F	6707	2021-08-09	2017-02-15	4.2	4.29	—	4.2	0.011	1.72	6.0	0.08	14.74	0.01	1.433	32.45	5.99	13.0	85.5	1.4	-3.79	0.66	0.57	—	4.2	0.003	0.99	0.0	0.05	12.72	0.01	2.099	19.27	0.00	12.3	87.5	0.2	-2.28	1.23	0.71	0.70	—	26422	3423	3	0	0	0	0	logfile
✔	6RVY	10018	2021-08-07	2019-06-03	4.13	4.25	4.04	4.1	0.006	1.03	0.0	0.06	14.69	0.01	2.290	6.72	0.49	7.5	92.5	0.0	-5.00	0.64	0.81	—	4.1	0.004	0.76	0.0	0.04	13.30	0.00	2.305	13.14	0.00	5.2	94.8	0.0	0.02	0.73	0.64	0.81	—	9627	1290	3	0	0	0	0	logfile
✔	5YUD	6845	2021-08-08	2017-11-21	4.28	4.47	—	4.3	0.008	1.31	0.0	0.06	10.31	0.01	1.301	54.09	0.17	16.1	82.8	1.1	-5.50	0.76	0.74	—	4.3	0.003	0.86	0.0	0.04	13.53	0.00	2.180	19.35	0.00	10.9	88.5	0.5	-2.09	1.79	0.77	0.78	—	10510	1313	3	0	1	0	0	logfile
✔	5ZBG	6911	2021-08-09	2018-02-11	4.36	4.83	—	4.5	0.005	0.70	0.0	0.04	13.89	0.00	2.258	7.44	4.79	7.0	92.7	0.3	-2.22	0.69	0.81	—	4.5	0.003	0.68	0.0	0.04	12.77	0.00	2.173	12.93	0.00	5.5	94.5	0.0	1.15	1.07	0.70	0.83	—	21260	2680	4	0	0	0	0	logfile
✔	3JC2	3245	2021-08-07	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	17.88	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.028	2.38	2.0	0.05	17.84	0.00	1.835	21.05	0.00	5.3	94.0	0.6	-1.16	3.32	0.24	0.53	1.43	3911	482	4	0	32	0	0	logfile
✔	6UPK	20840	2021-08-08	2019-10-17	4.9	7.69	6.08	7.1	0.005	0.95	0.0	0.05	20.35	0.01	1.570	20.32	0.00	7.2	92.8	0.0	-3.94	0.89	0.77	—	7.0	0.003	0.64	0.0	0.04	22.39	0.00	1.972	26.23	0.00	5.1	94.9	0.0	-1.03	2.98	0.90	0.83	—	13861	1314	10	144	54	0	0	logfile
✔	4UiS	2974	2021-08-08	2015-04-03	4.4	4.48	—	4.4	0.009	1.30	0.0	0.06	9.92	0.01	1.546	24.35	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.004	0.81	0.0	0.04	12.06	0.00	2.087	16.91	0.00	9.8	89.0	1.2	-1.47	1.69	0.55	0.74	—	8518	791	5	0	458	0	0	logfile
✔	3JD8	6640	2021-08-08	2016-05-01	4.43	4.58	—	4.4	0.018	1.55	5.0	0.24	16.78	0.02	1.335	75.85	11.82	11.9	79.6	8.5	-3.29	0.54	0.62	—	4.4	0.004	0.94	0.0	0.08	12.33	0.00	2.102	19.30	0.00	8.3	90.7	1.1	-0.52	1.31	0.57	0.73	—	8050	1133	1	0	25	0	0	logfile
✔	6FN4	4282	2021-08-08	2018-02-02	4.14	4.24	—	4.2	0.005	0.81	0.0	0.05	9.96	0.01	2.096	8.79	0.00	7.5	91.3	1.2	-2.94	0.68	0.74	—	4.2	0.003	0.65	0.0	0.04	12.44	0.00	2.191	8.55	0.00	3.9	96.0	0.1	0.23	1.72	0.71	0.76	—	12702	1626	4	0	4	0	0	logfile
✔	6QX8	4663	2021-08-11	2019-03-07	4.07	4.05	—	4.0	0.008	0.94	0.0	0.05	15.12	0.01	1.805	11.14	0.14	8.0	91.9	0.2	-3.75	0.74	0.73	—	4.0	0.003	0.65	0.0	0.04	14.67	0.00	1.913	15.19	0.00	7.4	92.6	0.0	-1.20	1.33	0.74	0.72	—	38594	2384	8	24	0	0	19050	logfile
✔	6QXE	4666	2021-08-11	2019-03-07	4.15	4.14	—	4.0	0.008	0.92	0.0	0.05	14.95	0.01	1.734	14.44	0.13	7.5	92.3	0.2	-3.74	0.67	0.54	—	4.0	0.006	0.78	0.0	0.04	14.51	0.01	1.817	22.28	0.00	10.7	89.1	0.2	-1.65	2.66	0.78	0.76	—	40460	2626	10	24	0	0	19050	logfile

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