Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Vo3	21258	2022-07-04	2020-01-29	4.25	4.75	—	4.5	0.019	1.81	0.0	0.10	10.96	0.01	2.385	1.99	0.44	3.8	95.7	0.5	0.21	0.75	0.75	—	4.5	0.005	0.82	0.0	0.05	13.10	0.01	2.089	22.32	0.00	7.0	92.6	0.4	-0.48	1.15	0.76	0.78	—	19554	2334	39	0	78	0	0	logfile
✔	6ZQF	11362	2022-07-05	2020-07-09	4.9	5.01	—	4.8	0.009	1.42	25.0	0.08	17.00	0.01	0.887	15.97	0.00	6.2	92.3	1.5	-2.85	0.69	0.48	—	4.8	0.005	0.94	0.0	0.05	18.65	0.00	1.930	21.25	0.00	12.6	87.1	0.3	-2.62	1.55	0.81	0.72	—	89582	11884	43	1447	1	0	0	logfile
✔	6ZQA	11357	2022-07-05	2020-07-09	4.4	4.48	—	4.4	0.006	1.11	1.0	0.06	14.62	0.01	1.928	5.28	0.00	9.3	90.4	0.3	-3.27	0.77	0.74	—	4.4	0.008	1.21	0.0	0.06	16.57	0.01	1.705	19.08	0.00	18.9	81.0	0.1	-3.57	1.32	0.76	0.74	—	125991	19047	63	1485	5	0	0	logfile
✔	7CR0	30443	2022-07-03	2020-08-12	3.1	3.35	—	3.4	0.005	0.63	0.0	0.04	14.38	0.00	2.212	5.87	0.00	4.0	96.0	0.0	-4.99	0.58	0.82	3.75	3.4	0.003	0.57	0.0	0.04	15.37	0.00	2.249	7.81	0.00	3.7	96.3	0.0	2.65	0.54	0.57	0.81	2.49	8188	1004	4	0	0	0	0	logfile
✔	7AiB	11794	2022-07-04	2020-09-26	4.7	4.97	4.76	4.3	0.014	1.84	3.0	0.10	18.72	0.01	2.329	2.98	1.14	6.0	94.0	0.0	-3.64	0.88	0.72	—	4.2	0.003	0.66	0.0	0.04	17.71	0.00	2.134	20.75	0.00	3.8	96.2	0.0	0.14	1.07	0.92	0.82	—	13839	1591	7	60	2	0	0	logfile
✔	7JZM	22533	2022-07-02	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.37	0.0	0.08	9.25	0.01	2.420	1.01	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.003	0.69	0.0	0.04	13.98	0.00	2.201	6.85	0.00	2.4	97.6	0.0	0.71	1.24	0.75	0.79	2.69	2033	258	3	0	3	0	0	logfile
✔	6M4D	30076	2022-07-03	2020-03-06	4.4	4.58	—	4.3	0.007	0.84	0.0	0.05	31.38	0.01	2.074	25.95	0.71	6.6	92.8	0.6	-2.81	0.88	0.82	—	4.3	0.004	0.71	0.0	0.04	30.65	0.01	2.146	20.45	0.00	2.4	97.1	0.5	0.15	0.95	0.88	0.82	—	10497	682	10	250	0	0	0	logfile
✔	7CHH	30374	2022-07-06	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.90	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.3	0.012	1.17	0.0	0.05	15.96	0.01	1.918	20.25	0.00	6.6	93.4	0.0	-1.77	1.33	0.21	0.12	0.40	29029	3704	17	0	41	0	0	logfile
✔	6K99	9947	2022-07-04	2019-06-14	4.1	6.62	4.25	6.7	0.003	0.72	0.0	0.04	12.51	0.00	2.388	7.15	1.46	7.6	92.4	0.0	-2.97	0.73	0.83	—	6.9	0.003	0.89	0.0	0.05	13.30	0.01	2.126	21.95	0.00	7.5	92.5	0.0	-1.50	1.85	0.75	0.88	—	8244	996	12	0	0	0	0	logfile
✔	7Ai5	11791	2022-07-03	2020-09-26	4.4	4.82	4.47	4.4	0.014	1.85	5.0	0.10	17.79	0.01	2.472	3.83	1.14	3.3	96.7	0.0	-2.02	0.86	0.70	—	4.3	0.003	0.66	0.0	0.04	16.91	0.00	2.164	15.64	0.00	2.3	97.7	0.0	0.05	0.97	0.90	0.78	—	13376	1576	6	44	2	0	0	logfile
✔	7JZU	22574	2022-07-02	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.78	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.003	0.59	0.0	0.04	14.23	0.00	2.252	5.19	0.00	3.3	96.7	0.0	0.46	1.61	0.69	0.80	4.31	1987	248	3	0	3	0	0	logfile
✔	6X34	22017	2022-07-06	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.87	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.003	0.65	0.0	0.04	9.64	0.00	2.095	12.85	0.00	4.0	96.0	0.0	0.40	0.92	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✔	7JLX	22383	2022-07-03	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6X64	22069	2022-07-04	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.24	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7DL2	30708	2022-07-05	2020-11-25	4.4	4.72	—	4.3	0.006	0.88	1.0	0.06	13.74	0.00	2.198	35.72	1.11	10.1	89.8	0.1	-3.66	0.81	0.80	—	4.3	0.003	0.67	0.0	0.04	13.51	0.00	2.145	15.99	0.00	6.4	93.6	0.0	0.16	0.58	0.82	0.81	—	23285	2886	6	0	203	0	0	logfile
✔	7NG4	12307	2022-07-05	2021-02-08	4.4	5.07	4.36	3.8	0.008	1.02	0.0	0.05	13.15	0.01	1.641	24.25	0.12	7.4	92.6	0.0	-2.05	0.89	0.78	—	3.8	0.003	0.58	0.0	0.04	12.80	0.00	1.785	12.73	0.00	4.6	95.4	0.0	-0.98	1.00	0.89	0.80	—	74795	4656	13	0	65	0	37485	logfile
✔	6W1S	21514	2022-07-08	2020-03-04	4.02	4.48	—	4.1	0.008	0.79	0.0	0.04	12.39	0.00	1.330	9.47	0.03	13.4	86.4	0.2	-3.32	0.81	0.74	—	4.1	0.007	0.84	1.0	0.04	12.30	0.00	2.042	12.61	0.00	15.6	84.3	0.1	-1.22	0.57	0.81	0.76	—	47275	6862	25	0	567	0	0	logfile
✔	7K8Y	22735	2022-07-05	2020-09-27	4.4	5.34	—	4.4	0.002	0.53	0.0	0.05	10.71	0.00	1.137	21.78	0.04	2.8	97.0	0.3	-2.11	0.80	0.77	—	4.4	0.002	0.58	0.0	0.04	11.36	0.00	2.095	12.62	0.00	3.7	96.1	0.1	-0.30	1.09	0.81	0.81	—	25560	3242	8	0	23	0	0	logfile
✔	7K7G	22698	2022-07-03	2020-09-22	4.2	4.83	—	4.1	0.008	1.03	0.0	0.06	29.80	0.01	2.251	7.86	0.00	4.1	95.9	0.0	-1.83	0.87	0.81	—	4.2	0.005	0.70	0.0	0.04	28.68	0.00	2.137	19.59	0.00	5.7	94.3	0.0	0.24	1.74	0.87	0.81	—	11098	766	11	246	2	0	0	logfile
✔	6Y5D	10694	2022-07-06	2020-02-25	4.1	5.00	—	4.0	0.013	1.23	0.0	0.07	25.87	0.01	2.251	1.76	0.11	2.0	97.9	0.1	0.59	0.86	0.76	—	4.0	0.003	0.61	0.0	0.03	26.23	0.00	1.921	12.91	0.00	2.4	97.6	0.0	1.11	1.25	0.88	0.81	—	30372	2218	31	612	11	0	0	logfile

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