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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8HKP | 34856 | 2023-07-16 | 2022-11-27 | 3.6 | 3.48 | 3.49 | 3.5 | 0.009 | 0.68 | 0.0 | 0.04 | 15.28 | 0.00 | 2.142 | 4.27 | 0.00 | 2.7 | 97.3 | 0.0 | -2.19 | 0.64 | 0.87 | 3.27 | 3.5 | 0.004 | 0.55 | 0.0 | 0.04 | 16.21 | 0.00 | 2.142 | 4.45 | 0.00 | 2.2 | 97.8 | 0.0 | 2.47 | 0.86 | 0.64 | 0.88 | 2.43 | 34098 | 2088 | 18 | 0 | 6 | 0 | 16842 | logfile |
✔ | 6D3R | 7793 | 2023-07-04 | 2018-04-16 | 4.3 | 4.80 | 4.40 | 4.5 | 0.017 | 1.75 | 0.0 | 0.10 | 9.07 | 0.01 | 2.385 | 0.57 | 0.00 | 1.5 | 98.5 | 0.0 | 0.66 | 0.66 | 0.76 | — | 4.5 | 0.003 | 0.65 | 0.0 | 0.04 | 11.96 | 0.00 | 2.185 | 7.56 | 0.00 | 3.4 | 96.6 | 0.0 | 1.90 | 1.20 | 0.68 | 0.78 | — | 7610 | 1127 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7T3o | 25666 | 2023-07-03 | 2021-12-08 | 3.3 | 3.72 | — | 3.7 | 0.006 | 0.68 | 0.0 | 0.05 | 13.49 | 0.00 | 2.284 | 3.91 | 0.29 | 7.1 | 92.9 | 0.0 | -3.36 | 0.49 | 0.86 | 1.84 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 16.17 | 0.00 | 2.229 | 6.17 | 0.00 | 3.6 | 96.4 | 0.0 | 0.21 | 0.58 | 0.48 | 0.84 | 1.64 | 3410 | 452 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TAQ | 8382 | 2023-07-08 | 2016-09-10 | 4.1 | 4.24 | 4.25 | 4.1 | 0.005 | 0.97 | 0.0 | 0.05 | 10.16 | 0.01 | 1.373 | 4.58 | 0.43 | 10.9 | 88.9 | 0.2 | -5.26 | 0.76 | 0.78 | — | 4.1 | 0.005 | 0.79 | 0.0 | 0.04 | 12.30 | 0.00 | 2.046 | 14.49 | 0.00 | 12.5 | 87.4 | 0.1 | -1.92 | 1.94 | 0.77 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 6VRK | 21369 | 2023-07-04 | 2020-02-07 | 4.1 | 4.22 | 4.47 | 4.2 | 0.004 | 0.67 | 0.0 | 0.04 | 13.85 | 0.00 | 2.245 | 10.73 | 0.00 | 6.5 | 93.5 | 0.0 | -3.10 | 0.47 | 0.69 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 13.89 | 0.00 | 2.150 | 15.90 | 0.00 | 7.1 | 92.9 | 0.0 | -1.22 | 1.04 | 0.48 | 0.69 | — | 6141 | 764 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7SYM | 25533 | 2023-07-13 | 2021-11-25 | 4.8 | 3.64 | 4.44 | 3.5 | 0.003 | 0.83 | 1.0 | 0.04 | 15.76 | 0.01 | 2.245 | 5.29 | 0.00 | 5.3 | 94.7 | 0.0 | -2.78 | 0.63 | 0.68 | — | 3.5 | 0.005 | 0.73 | 0.0 | 0.04 | 16.44 | 0.01 | 1.990 | 16.98 | 0.00 | 8.9 | 91.1 | 0.0 | -1.62 | 0.52 | 0.64 | 0.70 | — | 78761 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |
✔ | 7B6D | 12052 | 2023-07-05 | 2020-12-07 | 4.27 | 2.60 | — | 2.5 | 0.005 | 0.87 | 0.0 | 0.05 | 14.40 | 0.01 | 2.049 | 32.99 | 0.43 | 10.2 | 89.7 | 0.1 | -2.46 | 0.78 | 0.74 | — | 2.5 | 0.003 | 0.72 | 0.0 | 0.05 | 14.41 | 0.00 | 2.080 | 23.40 | 0.00 | 9.1 | 90.9 | 0.0 | -1.38 | 1.33 | 0.78 | 0.75 | — | 10470 | 1290 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TAZ | 8390 | 2023-07-08 | 2016-09-10 | 4.3 | 4.46 | 4.86 | 4.3 | 0.004 | 0.86 | 4.0 | 0.05 | 9.92 | 0.01 | 1.373 | 4.79 | 0.58 | 10.2 | 89.6 | 0.2 | -5.04 | 0.74 | 0.73 | — | 4.3 | 0.005 | 0.81 | 0.0 | 0.04 | 12.08 | 0.00 | 2.051 | 18.58 | 0.00 | 12.9 | 86.9 | 0.2 | -2.20 | 0.91 | 0.76 | 0.77 | — | 121276 | 13500 | 12 | 0 | 3712 | 0 | 0 | logfile |
✔ | 7FDA | 31538 | 2023-07-06 | 2021-07-16 | 4.2 | 3.94 | — | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 11.99 | 0.00 | 1.871 | 8.71 | 0.00 | 5.8 | 94.2 | 0.0 | -0.86 | 0.72 | 0.63 | — | 3.1 | 0.004 | 0.75 | 0.0 | 0.04 | 13.16 | 0.00 | 2.055 | 16.36 | 0.00 | 5.8 | 94.2 | 0.0 | -0.77 | 1.81 | 0.77 | 0.78 | — | 64497 | 8295 | 31 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DD8 | 27336 | 2023-07-05 | 2022-06-17 | 3.4 | 3.50 | 3.43 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.62 | 0.00 | 2.211 | 7.34 | 0.00 | 4.0 | 95.9 | 0.1 | -0.65 | 0.81 | 0.81 | 2.33 | 3.4 | 0.002 | 0.53 | 0.0 | 0.04 | 16.75 | 0.00 | 2.198 | 10.21 | 0.00 | 4.0 | 96.0 | 0.0 | 0.42 | 1.22 | 0.83 | 0.84 | 1.99 | 10492 | 1272 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SYL | 25532 | 2023-07-13 | 2021-11-25 | 4.5 | 3.40 | 4.38 | 3.3 | 0.004 | 0.87 | 0.0 | 0.04 | 15.84 | 0.01 | 2.191 | 6.19 | 0.02 | 6.6 | 93.4 | 0.0 | -3.03 | 0.63 | 0.59 | — | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 16.52 | 0.00 | 2.016 | 16.63 | 0.00 | 6.9 | 93.1 | 0.0 | -1.86 | 1.09 | 0.66 | 0.63 | — | 78748 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |
✔ | 5TAW | 8387 | 2023-07-08 | 2016-09-10 | 4.4 | 4.49 | 4.56 | 4.2 | 0.004 | 0.86 | 0.0 | 0.05 | 9.82 | 0.01 | 1.373 | 5.05 | 0.39 | 10.3 | 89.5 | 0.2 | -4.87 | 0.79 | 0.75 | — | 4.2 | 0.005 | 0.79 | 0.0 | 0.04 | 11.93 | 0.00 | 2.017 | 18.09 | 0.00 | 13.0 | 86.9 | 0.1 | -1.94 | 1.99 | 0.80 | 0.79 | — | 121276 | 13500 | 12 | 0 | 3712 | 0 | 0 | logfile |
✔ | 7T8C | 25744 | 2023-07-13 | 2021-12-16 | 4.5 | 3.21 | 4.51 | 4.6 | 0.001 | 0.42 | 0.0 | 0.04 | 7.59 | 0.00 | 2.347 | 5.08 | 0.41 | 3.6 | 96.4 | 0.0 | 0.76 | 0.63 | 0.54 | — | 4.2 | 0.002 | 0.64 | 0.0 | 0.04 | 10.96 | 0.00 | 2.130 | 11.08 | 0.00 | 4.6 | 95.4 | 0.0 | 0.62 | 1.08 | 0.66 | 0.61 | — | 28952 | 3626 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SAB | 24947 | 2023-07-11 | 2021-09-22 | 4.3 | 4.66 | — | 4.5 | 0.006 | 0.81 | 9.0 | 0.06 | 13.44 | 0.01 | 1.955 | 10.59 | 0.38 | 6.3 | 93.5 | 0.2 | -1.48 | 0.68 | 0.81 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.04 | 13.49 | 0.00 | 2.168 | 8.81 | 0.00 | 7.1 | 92.8 | 0.1 | -1.13 | 0.97 | 0.69 | 0.81 | — | 23510 | 3160 | 10 | 0 | 13 | 0 | 0 | logfile |
✔ | 5T9V | 8376 | 2023-07-08 | 2016-09-09 | 4.4 | 4.79 | 4.75 | 4.5 | 0.004 | 0.90 | 4.0 | 0.05 | 9.94 | 0.01 | 1.374 | 5.64 | 0.54 | 10.5 | 89.3 | 0.2 | -4.84 | 0.81 | 0.78 | — | 4.5 | 0.003 | 0.72 | 0.0 | 0.04 | 11.70 | 0.00 | 2.114 | 16.07 | 0.00 | 10.7 | 89.1 | 0.1 | -1.35 | 0.84 | 0.82 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5TA3 | 8377 | 2023-07-08 | 2016-09-09 | 4.4 | 4.71 | 4.62 | 4.5 | 0.004 | 0.90 | 0.0 | 0.05 | 9.97 | 0.01 | 1.374 | 5.28 | 0.54 | 10.8 | 89.1 | 0.1 | -4.86 | 0.81 | 0.78 | — | 4.5 | 0.004 | 0.74 | 0.0 | 0.04 | 11.98 | 0.00 | 2.077 | 17.98 | 0.00 | 12.1 | 87.8 | 0.1 | -1.58 | 0.87 | 0.82 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 7B6E | 12053 | 2023-07-03 | 2020-12-07 | 4.5 | 2.79 | — | 5.1 | 0.005 | 1.03 | 0.0 | 0.05 | 15.04 | 0.01 | 2.129 | 36.05 | 0.00 | 10.9 | 89.1 | 0.0 | -3.88 | 0.62 | 0.66 | — | 2.4 | 0.004 | 0.99 | 0.0 | 0.05 | 14.87 | 0.00 | 2.111 | 27.61 | 0.00 | 11.3 | 88.7 | 0.0 | -1.65 | 0.83 | 0.61 | 0.67 | — | 2205 | 269 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TAM | 8379 | 2023-07-08 | 2016-09-10 | 4.3 | 4.53 | 4.46 | 4.3 | 0.005 | 0.92 | 4.0 | 0.05 | 9.87 | 0.01 | 1.373 | 5.48 | 0.35 | 10.4 | 89.5 | 0.2 | -4.88 | 0.81 | 0.79 | — | 4.3 | 0.005 | 0.79 | 0.0 | 0.04 | 12.08 | 0.00 | 2.076 | 18.45 | 0.00 | 12.5 | 87.3 | 0.1 | -1.92 | 1.52 | 0.82 | 0.81 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 6W4o | 21535 | 2023-07-13 | 2020-03-11 | 4.8 | 5.05 | 4.72 | 4.7 | 0.004 | 0.78 | 1.0 | 0.05 | 10.85 | 0.00 | 0.834 | 15.75 | 0.91 | 3.0 | 96.7 | 0.2 | -1.53 | 0.83 | 0.70 | — | 4.7 | 0.004 | 0.75 | 0.0 | 0.05 | 13.01 | 0.00 | 2.134 | 21.61 | 0.00 | 2.4 | 97.4 | 0.2 | 0.49 | 1.35 | 0.89 | 0.82 | — | 14475 | 1789 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 5T9S | 8375 | 2023-07-08 | 2016-09-09 | 4.2 | 4.32 | 4.62 | 4.2 | 0.004 | 0.88 | 0.0 | 0.05 | 9.86 | 0.01 | 1.373 | 3.99 | 0.50 | 10.3 | 89.5 | 0.1 | -5.16 | 0.72 | 0.73 | — | 4.2 | 0.005 | 0.79 | 0.0 | 0.04 | 12.46 | 0.00 | 2.092 | 15.41 | 0.00 | 13.6 | 86.3 | 0.1 | -2.08 | 0.92 | 0.73 | 0.76 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |