Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HKP	34856	2023-07-16	2022-11-27	3.6	3.48	3.49	3.5	0.009	0.68	0.0	0.04	15.28	0.00	2.142	4.27	0.00	2.7	97.3	0.0	-2.19	0.64	0.87	3.27	3.5	0.004	0.55	0.0	0.04	16.21	0.00	2.142	4.45	0.00	2.2	97.8	0.0	2.47	0.86	0.64	0.88	2.43	34098	2088	18	0	6	0	16842	logfile
✔	6D3R	7793	2023-07-04	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.57	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.003	0.65	0.0	0.04	11.96	0.00	2.185	7.56	0.00	3.4	96.6	0.0	1.90	1.20	0.68	0.78	—	7610	1127	1	0	2	0	0	logfile
✔	7T3o	25666	2023-07-03	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.003	0.66	0.0	0.04	16.17	0.00	2.229	6.17	0.00	3.6	96.4	0.0	0.21	0.58	0.48	0.84	1.64	3410	452	1	0	0	0	0	logfile
✔	5TAQ	8382	2023-07-08	2016-09-10	4.1	4.24	4.25	4.1	0.005	0.97	0.0	0.05	10.16	0.01	1.373	4.58	0.43	10.9	88.9	0.2	-5.26	0.76	0.78	—	4.1	0.005	0.79	0.0	0.04	12.30	0.00	2.046	14.49	0.00	12.5	87.4	0.1	-1.92	1.94	0.77	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	6VRK	21369	2023-07-04	2020-02-07	4.1	4.22	4.47	4.2	0.004	0.67	0.0	0.04	13.85	0.00	2.245	10.73	0.00	6.5	93.5	0.0	-3.10	0.47	0.69	—	4.2	0.003	0.73	0.0	0.04	13.89	0.00	2.150	15.90	0.00	7.1	92.9	0.0	-1.22	1.04	0.48	0.69	—	6141	764	4	0	4	0	0	logfile
✔	7SYM	25533	2023-07-13	2021-11-25	4.8	3.64	4.44	3.5	0.003	0.83	1.0	0.04	15.76	0.01	2.245	5.29	0.00	5.3	94.7	0.0	-2.78	0.63	0.68	—	3.5	0.005	0.73	0.0	0.04	16.44	0.01	1.990	16.98	0.00	8.9	91.1	0.0	-1.62	0.52	0.64	0.70	—	78761	4891	38	1859	2	0	0	logfile
✔	7B6D	12052	2023-07-05	2020-12-07	4.27	2.60	—	2.5	0.005	0.87	0.0	0.05	14.40	0.01	2.049	32.99	0.43	10.2	89.7	0.1	-2.46	0.78	0.74	—	2.5	0.003	0.72	0.0	0.05	14.41	0.00	2.080	23.40	0.00	9.1	90.9	0.0	-1.38	1.33	0.78	0.75	—	10470	1290	8	0	0	0	0	logfile
✔	5TAZ	8390	2023-07-08	2016-09-10	4.3	4.46	4.86	4.3	0.004	0.86	4.0	0.05	9.92	0.01	1.373	4.79	0.58	10.2	89.6	0.2	-5.04	0.74	0.73	—	4.3	0.005	0.81	0.0	0.04	12.08	0.00	2.051	18.58	0.00	12.9	86.9	0.2	-2.20	0.91	0.76	0.77	—	121276	13500	12	0	3712	0	0	logfile
✔	7FDA	31538	2023-07-06	2021-07-16	4.2	3.94	—	3.5	0.003	0.56	0.0	0.04	11.99	0.00	1.871	8.71	0.00	5.8	94.2	0.0	-0.86	0.72	0.63	—	3.1	0.004	0.75	0.0	0.04	13.16	0.00	2.055	16.36	0.00	5.8	94.2	0.0	-0.77	1.81	0.77	0.78	—	64497	8295	31	0	0	0	0	logfile
✔	8DD8	27336	2023-07-05	2022-06-17	3.4	3.50	3.43	3.4	0.003	0.60	0.0	0.04	15.62	0.00	2.211	7.34	0.00	4.0	95.9	0.1	-0.65	0.81	0.81	2.33	3.4	0.002	0.53	0.0	0.04	16.75	0.00	2.198	10.21	0.00	4.0	96.0	0.0	0.42	1.22	0.83	0.84	1.99	10492	1272	2	0	0	0	0	logfile
✔	7SYL	25532	2023-07-13	2021-11-25	4.5	3.40	4.38	3.3	0.004	0.87	0.0	0.04	15.84	0.01	2.191	6.19	0.02	6.6	93.4	0.0	-3.03	0.63	0.59	—	3.3	0.003	0.65	0.0	0.04	16.52	0.00	2.016	16.63	0.00	6.9	93.1	0.0	-1.86	1.09	0.66	0.63	—	78748	4891	38	1859	2	0	0	logfile
✔	5TAW	8387	2023-07-08	2016-09-10	4.4	4.49	4.56	4.2	0.004	0.86	0.0	0.05	9.82	0.01	1.373	5.05	0.39	10.3	89.5	0.2	-4.87	0.79	0.75	—	4.2	0.005	0.79	0.0	0.04	11.93	0.00	2.017	18.09	0.00	13.0	86.9	0.1	-1.94	1.99	0.80	0.79	—	121276	13500	12	0	3712	0	0	logfile
✔	7T8C	25744	2023-07-13	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	11.08	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile
✔	7SAB	24947	2023-07-11	2021-09-22	4.3	4.66	—	4.5	0.006	0.81	9.0	0.06	13.44	0.01	1.955	10.59	0.38	6.3	93.5	0.2	-1.48	0.68	0.81	—	4.5	0.003	0.67	0.0	0.04	13.49	0.00	2.168	8.81	0.00	7.1	92.8	0.1	-1.13	0.97	0.69	0.81	—	23510	3160	10	0	13	0	0	logfile
✔	5T9V	8376	2023-07-08	2016-09-09	4.4	4.79	4.75	4.5	0.004	0.90	4.0	0.05	9.94	0.01	1.374	5.64	0.54	10.5	89.3	0.2	-4.84	0.81	0.78	—	4.5	0.003	0.72	0.0	0.04	11.70	0.00	2.114	16.07	0.00	10.7	89.1	0.1	-1.35	0.84	0.82	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5TA3	8377	2023-07-08	2016-09-09	4.4	4.71	4.62	4.5	0.004	0.90	0.0	0.05	9.97	0.01	1.374	5.28	0.54	10.8	89.1	0.1	-4.86	0.81	0.78	—	4.5	0.004	0.74	0.0	0.04	11.98	0.00	2.077	17.98	0.00	12.1	87.8	0.1	-1.58	0.87	0.82	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	7B6E	12053	2023-07-03	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	2.4	0.004	0.99	0.0	0.05	14.87	0.00	2.111	27.61	0.00	11.3	88.7	0.0	-1.65	0.83	0.61	0.67	—	2205	269	1	0	0	0	0	logfile
✔	5TAM	8379	2023-07-08	2016-09-10	4.3	4.53	4.46	4.3	0.005	0.92	4.0	0.05	9.87	0.01	1.373	5.48	0.35	10.4	89.5	0.2	-4.88	0.81	0.79	—	4.3	0.005	0.79	0.0	0.04	12.08	0.00	2.076	18.45	0.00	12.5	87.3	0.1	-1.92	1.52	0.82	0.81	—	121456	13500	12	0	3720	0	0	logfile
✔	6W4o	21535	2023-07-13	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.78	1.0	0.05	10.85	0.00	0.834	15.75	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.004	0.75	0.0	0.05	13.01	0.00	2.134	21.61	0.00	2.4	97.4	0.2	0.49	1.35	0.89	0.82	—	14475	1789	13	0	0	0	0	logfile
✔	5T9S	8375	2023-07-08	2016-09-09	4.2	4.32	4.62	4.2	0.004	0.88	0.0	0.05	9.86	0.01	1.373	3.99	0.50	10.3	89.5	0.1	-5.16	0.72	0.73	—	4.2	0.005	0.79	0.0	0.04	12.46	0.00	2.092	15.41	0.00	13.6	86.3	0.1	-2.08	0.92	0.73	0.76	—	120756	13500	12	0	3608	0	0	logfile

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