Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Y5V	10704	2021-05-04	2020-02-25	4.08	4.18	4.07	4.2	0.004	0.66	0.0	0.04	11.31	0.00	2.232	7.24	0.29	4.0	96.0	0.0	-2.25	0.65	0.84	—	4.1	0.004	0.70	0.0	0.04	12.65	0.00	2.132	11.09	0.00	4.5	95.5	0.0	0.95	1.83	0.65	0.84	—	13400	1758	6	0	8	0	0	logfile
✔	6VFi	21173	2021-05-07	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.41	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	4.5	0.004	0.73	0.0	0.04	13.36	0.00	2.222	17.05	0.00	4.8	95.2	0.0	1.56	2.16	0.78	0.77	—	58488	7560	48	0	0	0	0	logfile
✔	6So5	10266	2021-05-03	2019-08-29	4.2	4.36	—	4.2	0.005	0.82	0.0	0.04	14.99	0.01	1.973	23.32	0.00	10.2	89.8	0.0	-4.60	0.68	0.79	—	4.2	0.004	0.81	0.0	0.05	14.22	0.01	2.150	17.83	0.00	6.5	93.5	0.0	0.03	1.88	0.67	0.78	—	8737	1097	7	0	1	0	0	logfile
✔	6Y50	10688	2021-05-04	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.78	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.006	0.80	0.0	0.05	9.98	0.01	1.956	12.46	0.00	15.3	84.7	0.1	-2.26	0.69	0.73	0.76	—	14916	2537	10	50	3	0	0	logfile
✔	6VM2	21236	2021-05-04	2020-01-27	3.34	4.05	3.31	3.8	0.064	2.35	0.0	0.14	17.78	0.02	2.295	5.64	0.00	4.2	95.8	0.0	-2.33	0.77	0.85	2.65	3.8	0.008	1.35	0.0	0.05	17.77	0.01	1.901	24.66	0.00	4.0	96.0	0.0	-1.10	0.51	0.75	0.85	2.49	15355	1815	15	0	20	0	0	logfile
✔	6S2E	10088	2021-05-04	2019-06-20	4.2	4.38	4.22	4.2	0.009	1.53	0.0	0.13	14.14	0.01	2.218	7.69	1.88	4.7	95.2	0.1	-1.45	0.81	0.75	—	4.2	0.003	0.69	0.0	0.04	13.36	0.00	2.155	13.24	0.00	3.6	96.4	0.0	0.19	1.34	0.81	0.75	—	12459	1539	4	0	1	0	0	logfile
✔	6NTS	0510	2021-05-03	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.28	0.00	1.917	1.91	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.41	0.00	1.738	7.03	0.00	2.5	97.5	0.0	0.88	2.54	0.92	0.84	1.32	9956	1240	5	0	3	0	0	logfile
✔	6PW6	20500	2021-05-04	2019-07-22	4.5	4.56	4.36	4.5	0.021	1.78	0.0	0.11	10.80	0.01	2.200	1.41	0.56	2.7	97.2	0.2	0.50	0.74	0.81	—	4.5	0.006	0.91	0.0	0.06	14.77	0.01	1.642	18.74	0.00	3.9	96.1	0.0	-0.79	1.01	0.73	0.80	—	15942	1842	45	0	108	0	0	logfile
✔	6ZPG	11338	2021-05-03	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.003	0.86	0.0	0.04	15.11	0.00	2.205	20.99	0.00	6.1	93.9	0.0	0.14	2.19	0.65	0.63	—	3808	463	1	0	0	0	0	logfile
✔	6TQE	10549	2021-05-03	2019-12-16	4.3	4.14	—	4.2	0.007	1.04	0.0	0.06	14.59	0.01	2.077	2.78	0.76	8.6	91.4	0.0	-6.13	0.76	0.89	—	4.2	0.002	0.61	0.0	0.04	13.60	0.00	2.026	4.71	0.00	3.6	96.4	0.0	-2.69	1.28	0.75	0.88	—	10076	1268	4	0	4	0	0	logfile
✔	7JK4	22361	2021-05-05	2020-07-27	3.4	3.91	3.45	3.6	0.006	0.95	0.0	0.05	17.55	0.01	2.102	4.61	0.32	4.1	95.9	0.0	-2.88	0.87	0.88	2.64	3.6	0.002	0.55	0.0	0.04	18.01	0.00	2.085	7.37	0.00	2.2	97.8	0.0	1.86	1.04	0.88	0.89	1.95	21717	2531	13	68	8	0	0	logfile
✔	6Y9A	10734	2021-05-03	2020-03-06	4.2	5.61	—	5.7	0.004	0.82	0.0	0.05	13.59	0.01	2.211	10.90	0.00	5.9	94.1	0.0	-1.17	0.53	0.45	—	5.6	0.003	0.79	0.0	0.05	13.42	0.01	2.175	17.52	0.00	5.9	94.1	0.0	-0.14	1.50	0.56	0.67	—	5948	776	4	0	0	0	0	logfile
✔	6VM0	21234	2021-05-04	2020-01-27	3.14	4.05	3.31	3.8	0.064	2.35	0.0	0.14	17.78	0.02	2.295	5.64	0.00	4.2	95.8	0.0	-2.33	0.77	0.85	2.65	3.8	0.008	1.35	0.0	0.05	17.77	0.01	1.901	24.66	0.00	4.0	96.0	0.0	-1.10	0.51	0.72	0.82	2.49	15355	1815	15	0	20	0	0	logfile
✔	6ZNM	11317	2021-05-04	2020-07-06	4.1	4.41	3.90	4.1	0.013	1.75	0.0	0.09	13.25	0.00	1.790	1.77	0.00	7.2	92.6	0.1	-2.56	0.77	0.75	—	4.1	0.004	0.71	0.0	0.04	12.97	0.00	2.053	12.18	0.00	4.7	95.2	0.1	-0.03	0.96	0.81	0.84	—	19253	2470	15	0	138	0	0	logfile
✔	6YW7	10960	2021-05-03	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	1.63	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	0.99	0.0	0.01	5.30	0.00	2.336	9.92	0.00	16.8	83.0	0.2	-3.04	6.98	0.80	0.74	—	5426	1788	9	0	2	0	0	logfile
✔	6SiH	10210	2021-05-06	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.36	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	4.7	0.003	0.58	0.0	0.04	13.47	0.00	2.024	12.22	0.00	4.8	95.2	0.0	1.35	1.59	0.88	0.79	—	37310	4880	10	0	0	0	0	logfile
✔	6WAZ	21582	2021-05-03	2020-03-26	4.1	4.33	—	4.2	0.004	0.80	0.0	0.06	14.85	0.01	1.931	9.92	0.27	8.5	91.5	0.0	-4.73	0.83	0.82	—	4.2	0.003	0.63	0.0	0.04	14.26	0.00	2.193	9.92	0.00	6.6	93.4	0.0	-0.98	1.32	0.83	0.84	—	8537	955	4	54	0	0	0	logfile
✔	6YJ6	10817	2021-05-05	2020-04-02	3.1	3.39	3.09	3.3	0.008	0.85	0.0	0.05	9.60	0.00	2.082	2.42	0.07	5.1	94.7	0.1	-4.59	0.73	0.77	4.44	3.3	0.003	0.57	0.0	0.04	13.85	0.00	2.016	5.80	0.00	5.7	94.3	0.0	-0.48	0.75	0.74	0.79	3.19	26878	1635	3	0	22	0	13353	logfile
✔	7JPS	22421	2021-05-04	2020-08-09	4.4	5.22	—	3.8	0.006	1.19	1.0	0.06	16.52	0.01	2.102	4.24	0.00	3.1	96.9	0.0	-2.45	0.67	0.46	—	3.9	0.004	0.75	0.0	0.04	16.25	0.00	1.925	22.84	0.00	5.2	94.8	0.0	-0.89	2.98	0.84	0.72	—	16352	1932	11	26	7	0	0	logfile
✔	6VLR	21232	2021-05-05	2020-01-24	4.42	4.62	4.43	4.4	0.021	1.75	0.0	0.10	10.31	0.01	2.046	1.10	0.13	2.6	97.2	0.2	1.05	0.72	0.80	—	4.4	0.003	0.65	0.0	0.04	12.31	0.00	2.167	11.53	0.00	4.5	95.4	0.1	0.89	2.74	0.73	0.84	—	21768	2611	37	0	92	0	0	logfile

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