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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GC6 | 4381 | 2021-01-08 | 2018-04-17 | 4.3 | 5.02 | — | 4.5 | 0.003 | 0.66 | 0.0 | 0.03 | 12.88 | 0.00 | 2.229 | 5.26 | 0.00 | 6.0 | 93.9 | 0.1 | -3.94 | 0.74 | 0.57 | — | 4.5 | 0.009 | 0.84 | 0.0 | 0.04 | 16.32 | 0.01 | 1.996 | 37.74 | 0.00 | 10.2 | 89.8 | 0.0 | -2.55 | 2.23 | 0.91 | 0.86 | — | 61404 | 2118 | 19 | 2092 | 0 | 0 | 0 | logfile |
✔ | 6GYL | 0091 | 2021-01-07 | 2018-06-30 | 4.8 | 4.06 | 4.25 | 12.0 | 0.008 | 0.47 | 0.0 | 0.04 | 11.68 | 0.00 | 0.860 | 9.13 | 0.16 | 6.2 | 92.7 | 1.1 | -3.33 | 0.32 | 0.00 | — | 3.3 | 0.003 | 0.79 | 0.0 | 0.04 | 14.39 | 0.01 | 2.097 | 19.63 | 0.00 | 7.2 | 92.6 | 0.2 | -1.51 | 2.19 | 0.51 | 0.21 | — | 43409 | 5250 | 30 | 112 | 11 | 0 | 0 | logfile |
✔ | 6GC8 | 4383 | 2021-01-06 | 2018-04-17 | 3.8 | 4.18 | — | 3.9 | 0.002 | 0.57 | 0.0 | 0.03 | 12.93 | 0.00 | 2.129 | 3.87 | 0.16 | 6.3 | 93.5 | 0.2 | -4.04 | 0.71 | 0.60 | 0.92 | 3.9 | 0.008 | 0.83 | 0.0 | 0.04 | 16.16 | 0.01 | 1.921 | 31.65 | 0.00 | 11.8 | 87.9 | 0.3 | -2.53 | 2.96 | 0.83 | 0.79 | 0.66 | 88884 | 3090 | 42 | 3016 | 6 | 42 | 0 | logfile |
✔ | 6NQB | 0482 | 2021-01-07 | 2019-01-20 | 3.8 | 4.35 | — | 4.0 | 0.006 | 0.98 | 0.0 | 0.05 | 17.60 | 0.01 | 2.216 | 7.98 | 0.41 | 13.6 | 86.3 | 0.1 | -5.36 | 0.86 | 0.79 | 0.88 | 4.0 | 0.003 | 0.67 | 0.0 | 0.04 | 17.31 | 0.01 | 2.040 | 20.76 | 0.00 | 13.5 | 86.5 | 0.1 | -3.02 | 0.84 | 0.86 | 0.79 | 0.63 | 42570 | 1752 | 17 | 1341 | 1 | 0 | 0 | logfile |
✔ | 3JAD | 6344 | 2021-01-05 | 2015-06-08 | 3.9 | 2.16 | — | 3.8 | 0.013 | 1.36 | 0.0 | 0.07 | 9.02 | 0.01 | 2.250 | 16.45 | 0.43 | 2.7 | 97.3 | 0.0 | -2.13 | 0.68 | 0.72 | 0.33 | 2.6 | 0.003 | 0.76 | 0.0 | 0.04 | 12.02 | 0.00 | 2.123 | 16.91 | 0.00 | 4.7 | 95.3 | 0.0 | 0.57 | 1.28 | 0.70 | 0.77 | 0.37 | 12705 | 1685 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2021-01-08 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 20.86 | 0.01 | 0.865 | 18.37 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.004 | 0.72 | 0.0 | 0.04 | 16.61 | 0.01 | 1.159 | 32.03 | 0.00 | 8.4 | 90.9 | 0.7 | -1.61 | 2.22 | 0.87 | 0.83 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 6BCQ | 7085 | 2021-01-06 | 2017-10-20 | 3.25 | 3.34 | — | 3.3 | 0.007 | 1.00 | 0.0 | 0.05 | 9.82 | 0.01 | 2.318 | 3.48 | 0.25 | 5.5 | 94.5 | 0.0 | -4.85 | 0.64 | 0.80 | 3.09 | 3.3 | 0.006 | 0.73 | 0.0 | 0.04 | 12.90 | 0.01 | 2.138 | 8.27 | 0.00 | 5.6 | 94.4 | 0.0 | 0.92 | 0.86 | 0.64 | 0.80 | 2.01 | 31048 | 3932 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6CoZ | 7545 | 2021-01-05 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.004 | 0.88 | 0.0 | 0.04 | 6.14 | 0.00 | 2.319 | 9.28 | 0.00 | 17.9 | 82.1 | 0.0 | -2.45 | 1.69 | 0.82 | 0.76 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JAF | 6346 | 2021-01-05 | 2015-06-08 | 3.8 | 2.26 | — | 3.8 | 0.015 | 1.30 | 0.0 | 0.41 | 10.07 | 0.01 | 2.134 | 18.84 | 0.70 | 0.6 | 99.4 | 0.0 | -0.82 | 0.69 | 0.71 | 1.52 | 3.8 | 0.003 | 1.22 | 0.0 | 0.13 | 12.50 | 0.00 | 2.177 | 16.38 | 0.00 | 3.1 | 96.9 | 0.0 | 0.39 | 1.83 | 0.72 | 0.81 | 1.19 | 13865 | 1710 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 6RZB | 10061 | 2021-01-05 | 2019-06-13 | 4.1 | 4.19 | 3.09 | 4.2 | 0.014 | 1.87 | 5.0 | 0.12 | 17.68 | 0.01 | 2.096 | 9.24 | 5.37 | 4.2 | 95.5 | 0.3 | -2.81 | 0.68 | 0.84 | — | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 14.66 | 0.00 | 1.965 | 15.57 | 0.00 | 2.5 | 97.5 | 0.0 | 0.19 | 1.48 | 0.68 | 0.82 | — | 8001 | 1001 | 5 | 1 | 3 | 0 | 0 | logfile |
✔ | 5WFE | 8827 | 2021-01-06 | 2017-07-11 | 3.64 | 4.04 | — | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 22.67 | 0.00 | 1.891 | 14.72 | 0.09 | 4.6 | 95.3 | 0.1 | -1.79 | 0.80 | 0.67 | 1.90 | 3.8 | 0.004 | 0.71 | 0.0 | 0.04 | 23.02 | 0.00 | 2.093 | 16.04 | 0.00 | 3.5 | 96.5 | 0.0 | 0.65 | 2.32 | 0.83 | 0.74 | 1.59 | 15523 | 1447 | 12 | 210 | 0 | 0 | 0 | logfile |
✔ | 5LMU | 4080 | 2021-01-08 | 2016-08-01 | 4.0 | 4.12 | 4.00 | 4.0 | 0.008 | 1.44 | 43.0 | 0.12 | 21.32 | 0.01 | 1.289 | 21.06 | 25.30 | 12.0 | 84.2 | 3.8 | -2.57 | 0.73 | 0.79 | — | 4.0 | 0.006 | 0.84 | 0.0 | 0.04 | 16.70 | 0.01 | 1.811 | 29.47 | 0.00 | 8.9 | 90.6 | 0.5 | -1.55 | 0.94 | 0.76 | 0.83 | — | 55195 | 2550 | 29 | 1612 | 82 | 0 | 0 | logfile |
✔ | 6HLR | 0240 | 2021-01-07 | 2018-09-11 | 3.18 | 3.30 | — | 3.3 | 0.008 | 0.94 | 0.0 | 0.06 | 12.28 | 0.01 | 1.734 | 4.70 | 0.15 | 4.9 | 95.1 | 0.0 | -4.37 | 0.70 | 0.84 | 4.14 | 3.2 | 0.005 | 0.69 | 0.0 | 0.05 | 14.45 | 0.00 | 1.996 | 9.35 | 0.00 | 4.2 | 95.8 | 0.0 | -0.38 | 1.64 | 0.72 | 0.86 | 3.48 | 32370 | 3881 | 21 | 73 | 8 | 0 | 0 | logfile |
✔ | 6HLS | 0241 | 2021-01-06 | 2018-09-11 | 3.21 | 3.27 | — | 3.3 | 0.007 | 0.95 | 0.0 | 0.06 | 10.21 | 0.01 | 2.231 | 5.17 | 0.32 | 5.4 | 94.6 | 0.0 | -4.54 | 0.64 | 0.82 | 4.01 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 13.27 | 0.00 | 2.113 | 8.90 | 0.00 | 3.6 | 96.4 | 0.0 | -0.72 | 1.27 | 0.65 | 0.83 | 3.20 | 30954 | 3896 | 17 | 0 | 7 | 0 | 0 | logfile |
✔ | 6HLQ | 0239 | 2021-01-07 | 2018-09-11 | 3.18 | 3.18 | — | 3.2 | 0.006 | 0.89 | 0.0 | 0.06 | 12.12 | 0.01 | 1.742 | 5.16 | 0.09 | 4.6 | 95.4 | 0.0 | -4.49 | 0.68 | 0.82 | 4.22 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 14.32 | 0.00 | 1.999 | 8.43 | 0.00 | 3.2 | 96.8 | 0.0 | -0.48 | 0.71 | 0.69 | 0.84 | 3.67 | 32731 | 3926 | 22 | 73 | 9 | 0 | 0 | logfile |
✔ | 6R25 | 4710 | 2021-01-06 | 2019-03-15 | 4.61 | 8.06 | — | 3.8 | 0.009 | 1.04 | 0.0 | 0.06 | 25.67 | 0.02 | 1.036 | 12.48 | 5.67 | 4.9 | 93.8 | 1.3 | -2.97 | 0.74 | 0.45 | — | 3.9 | 0.006 | 0.70 | 0.0 | 0.04 | 26.20 | 0.00 | 1.948 | 23.73 | 0.00 | 3.5 | 96.4 | 0.1 | 0.84 | 1.59 | 0.89 | 0.73 | — | 18654 | 1544 | 16 | 294 | 4 | 314 | 0 | logfile |
✔ | 5ooE | 3838 | 2021-01-05 | 2017-08-07 | 3.6 | 3.72 | 3.50 | 3.7 | 0.016 | 1.60 | 0.0 | 0.07 | 11.01 | 0.02 | 1.939 | 3.24 | 0.00 | 4.8 | 93.2 | 2.0 | -1.39 | 0.68 | 0.85 | 2.69 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 13.43 | 0.00 | 2.065 | 9.27 | 0.00 | 3.3 | 96.7 | 0.0 | 0.75 | 2.67 | 0.68 | 0.85 | 2.85 | 14310 | 1810 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6R1U | 4705 | 2021-01-06 | 2019-03-15 | 4.36 | 6.44 | — | 3.8 | 0.008 | 1.04 | 0.0 | 0.06 | 25.75 | 0.02 | 0.544 | 11.63 | 6.26 | 4.7 | 94.1 | 1.2 | -2.99 | 0.73 | 0.45 | — | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 25.52 | 0.00 | 2.050 | 13.52 | 0.00 | 2.6 | 97.4 | 0.1 | 0.94 | 1.26 | 0.89 | 0.77 | — | 18394 | 1550 | 14 | 294 | 4 | 0 | 0 | logfile |
✔ | 5ooF | 3839 | 2021-01-05 | 2017-08-07 | 3.4 | 3.53 | 3.41 | 3.5 | 0.015 | 1.54 | 0.0 | 0.08 | 11.80 | 0.02 | 2.010 | 2.86 | 0.00 | 6.3 | 91.0 | 2.7 | -1.40 | 0.71 | 0.85 | 2.69 | 3.5 | 0.007 | 0.79 | 0.0 | 0.05 | 13.83 | 0.00 | 2.004 | 8.67 | 0.00 | 4.3 | 95.1 | 0.5 | -0.19 | 2.16 | 0.70 | 0.86 | 2.58 | 14640 | 1855 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6KiW | 0693 | 2021-01-06 | 2019-07-20 | 4.0 | 4.12 | — | 4.0 | 0.006 | 0.89 | 0.0 | 0.05 | 22.54 | 0.01 | 2.182 | 4.29 | 0.00 | 9.1 | 90.9 | 0.0 | -3.96 | 0.70 | 0.74 | — | 4.0 | 0.003 | 0.64 | 0.0 | 0.04 | 23.05 | 0.00 | 2.102 | 11.74 | 0.00 | 7.6 | 92.4 | 0.0 | -1.21 | 0.78 | 0.70 | 0.73 | — | 20225 | 1809 | 16 | 289 | 1 | 0 | 0 | logfile |