Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PHG	13415	2023-02-17	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.004	0.66	0.0	0.04	13.37	0.00	1.921	20.25	0.00	11.6	88.4	0.0	-3.54	1.28	0.78	0.67	—	6469	427	3	0	0	0	3160	logfile
✔	6HJR	0237	2023-02-20	2018-09-04	4.2	4.57	4.24	4.3	0.009	1.10	0.0	0.06	11.09	0.01	2.200	6.58	0.70	10.6	89.2	0.2	-3.38	0.84	0.88	—	4.3	0.003	0.65	0.0	0.04	11.99	0.00	2.066	11.22	0.00	8.0	91.9	0.1	-1.09	0.59	0.84	0.88	—	12579	1578	19	0	31	0	0	logfile
✔	7PEC	13352	2023-02-27	2021-08-09	4.24	4.75	—	4.4	0.002	0.49	0.0	0.04	14.50	0.00	2.238	5.38	4.99	4.6	95.4	0.0	-1.94	0.73	0.78	—	4.4	0.003	0.65	0.0	0.04	13.48	0.00	2.087	12.69	0.00	3.2	96.8	0.0	0.50	0.92	0.74	0.79	—	30911	3822	5	0	57	0	0	logfile
✔	7WV5	32846	2023-02-20	2022-02-09	3.1	3.30	—	3.6	0.016	1.51	0.0	0.05	18.03	0.09	2.260	6.14	0.16	3.3	96.7	0.0	-1.03	0.69	0.81	4.11	3.6	0.003	1.73	0.0	0.04	18.66	0.02	2.116	7.48	0.00	4.1	95.9	0.0	-1.44	0.51	0.70	0.83	3.97	12958	1318	16	46	80	0	0	logfile
✔	6RFS	4874	2023-02-23	2019-04-16	4.04	4.52	—	4.1	0.010	1.26	0.0	0.94	10.33	0.01	2.078	8.88	0.15	8.3	91.5	0.2	-4.08	0.83	0.83	—	4.1	0.008	1.57	0.0	0.29	11.95	0.00	2.089	15.73	0.00	5.9	94.1	0.0	-0.68	1.38	0.83	0.84	—	60966	7685	49	0	12	0	0	logfile
✔	7VAK	31845	2023-02-27	2021-08-30	4.7	3.87	4.25	4.0	0.003	0.55	0.0	0.04	13.32	0.00	2.115	9.01	0.00	2.9	97.1	0.0	0.43	0.71	0.75	—	3.8	0.004	0.68	0.0	0.05	14.06	0.00	2.126	11.26	0.00	4.7	95.3	0.0	-0.10	1.25	0.72	0.77	—	29462	3788	12	0	0	0	0	logfile
✔	6CB1	7445	2023-02-27	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.97	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.004	0.79	0.0	0.04	18.17	0.00	2.026	21.56	0.00	8.9	91.1	0.0	-1.66	2.04	0.75	0.75	—	69945	6459	42	1615	694	0	0	logfile
✔	7SAM	24952	2023-02-17	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	6oDJ	20021	2023-02-25	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.73	0.0	0.06	7.96	0.00	2.090	10.56	0.00	0.0	0.0	0.0	—	0.60	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	6FU8	4319	2023-02-16	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	7JJJ	22354	2023-02-22	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.77	0.0	0.13	9.94	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.68	0.0	0.05	11.96	0.00	2.093	11.87	0.00	4.1	95.9	0.0	0.03	1.43	0.79	0.83	—	54614	6674	92	0	182	0	0	logfile
✔	6GiY	0008	2023-02-26	2018-05-15	4.3	4.14	—	4.0	0.007	1.18	0.0	0.06	10.19	0.01	2.232	6.17	0.29	12.7	87.1	0.3	-5.09	0.73	0.77	—	4.0	0.003	0.77	0.0	0.04	12.12	0.01	2.107	11.70	0.00	10.4	89.5	0.1	-2.19	0.92	0.73	0.76	—	28969	3649	9	0	0	0	0	logfile
✔	6GCS	4384	2023-02-22	2018-04-19	4.32	4.51	—	4.3	0.010	1.35	3.0	0.97	12.02	0.01	2.231	8.78	0.73	13.4	85.9	0.8	-4.79	0.77	0.78	—	4.3	0.009	1.69	0.0	0.30	12.66	0.00	2.049	20.00	0.00	13.2	86.5	0.3	-2.20	0.78	0.78	0.79	—	55137	6864	53	0	667	0	0	logfile
✔	7TXZ	26162	2023-02-20	2022-02-10	3.2	3.25	3.11	3.2	0.016	1.48	0.0	0.09	10.07	0.01	2.400	0.32	0.19	1.9	98.0	0.1	0.71	0.71	0.79	4.26	3.2	0.003	0.62	0.0	0.05	13.42	0.00	2.111	7.66	0.00	3.0	96.9	0.1	0.26	0.54	0.73	0.85	4.03	11303	1464	22	0	29	0	0	logfile
✔	5MS1	3562	2023-02-17	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.003	0.67	0.0	0.04	12.42	0.00	2.162	9.67	0.00	2.9	97.1	0.0	-0.77	1.54	0.46	0.85	—	4350	556	2	0	0	0	0	logfile
✔	7JLX	22383	2023-02-17	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	8B0i	15784	2023-02-22	2022-09-07	4.28	5.23	4.35	4.5	0.012	1.98	1.0	0.11	22.56	0.01	1.911	8.92	0.14	5.1	94.9	0.0	-1.62	0.77	0.61	—	4.5	0.002	0.59	0.0	0.04	20.65	0.00	1.974	14.00	0.00	5.1	94.9	0.0	0.38	1.42	0.80	0.74	—	17636	1075	5	103	0	0	7831	logfile
✔	7K8Y	22735	2023-02-26	2020-09-27	4.4	5.34	—	4.4	0.002	0.53	0.0	0.05	10.71	0.00	1.137	21.70	0.04	2.8	97.0	0.3	-2.11	0.80	0.77	—	4.4	0.005	0.75	0.0	0.05	11.59	0.00	1.985	25.96	0.00	7.4	92.5	0.2	-1.14	1.18	0.82	0.83	—	25560	3242	8	0	23	0	0	logfile
✔	8D8Q	27254	2023-02-17	2022-06-08	4.2	3.68	34.06	3.7	0.011	1.23	0.0	0.05	11.06	0.01	2.139	1.66	0.53	1.5	98.3	0.2	2.20	0.67	0.74	—	3.6	0.003	0.69	0.0	0.04	13.12	0.00	2.133	12.14	0.00	4.1	95.9	0.0	-0.21	1.02	0.67	0.75	—	5202	669	6	0	1	0	0	logfile
✔	6RDR	4828	2023-02-21	2019-04-12	4.1	4.19	4.13	4.1	0.007	0.94	0.0	0.05	14.97	0.01	1.908	6.99	0.44	5.2	94.6	0.2	-4.22	0.67	0.74	—	4.1	0.003	0.69	0.0	0.04	14.02	0.00	1.914	14.08	0.00	5.2	94.7	0.1	-0.50	1.29	0.69	0.78	—	53748	7103	37	0	11	0	0	logfile

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