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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PHG | 13415 | 2023-02-17 | 2021-08-17 | 4.3 | 4.13 | — | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 13.71 | 0.00 | 1.916 | 18.40 | 0.00 | 11.9 | 88.1 | 0.0 | -3.68 | 0.78 | 0.67 | — | 4.0 | 0.004 | 0.66 | 0.0 | 0.04 | 13.37 | 0.00 | 1.921 | 20.25 | 0.00 | 11.6 | 88.4 | 0.0 | -3.54 | 1.28 | 0.78 | 0.67 | — | 6469 | 427 | 3 | 0 | 0 | 0 | 3160 | logfile |
✔ | 6HJR | 0237 | 2023-02-20 | 2018-09-04 | 4.2 | 4.57 | 4.24 | 4.3 | 0.009 | 1.10 | 0.0 | 0.06 | 11.09 | 0.01 | 2.200 | 6.58 | 0.70 | 10.6 | 89.2 | 0.2 | -3.38 | 0.84 | 0.88 | — | 4.3 | 0.003 | 0.65 | 0.0 | 0.04 | 11.99 | 0.00 | 2.066 | 11.22 | 0.00 | 8.0 | 91.9 | 0.1 | -1.09 | 0.59 | 0.84 | 0.88 | — | 12579 | 1578 | 19 | 0 | 31 | 0 | 0 | logfile |
✔ | 7PEC | 13352 | 2023-02-27 | 2021-08-09 | 4.24 | 4.75 | — | 4.4 | 0.002 | 0.49 | 0.0 | 0.04 | 14.50 | 0.00 | 2.238 | 5.38 | 4.99 | 4.6 | 95.4 | 0.0 | -1.94 | 0.73 | 0.78 | — | 4.4 | 0.003 | 0.65 | 0.0 | 0.04 | 13.48 | 0.00 | 2.087 | 12.69 | 0.00 | 3.2 | 96.8 | 0.0 | 0.50 | 0.92 | 0.74 | 0.79 | — | 30911 | 3822 | 5 | 0 | 57 | 0 | 0 | logfile |
✔ | 7WV5 | 32846 | 2023-02-20 | 2022-02-09 | 3.1 | 3.30 | — | 3.6 | 0.016 | 1.51 | 0.0 | 0.05 | 18.03 | 0.09 | 2.260 | 6.14 | 0.16 | 3.3 | 96.7 | 0.0 | -1.03 | 0.69 | 0.81 | 4.11 | 3.6 | 0.003 | 1.73 | 0.0 | 0.04 | 18.66 | 0.02 | 2.116 | 7.48 | 0.00 | 4.1 | 95.9 | 0.0 | -1.44 | 0.51 | 0.70 | 0.83 | 3.97 | 12958 | 1318 | 16 | 46 | 80 | 0 | 0 | logfile |
✔ | 6RFS | 4874 | 2023-02-23 | 2019-04-16 | 4.04 | 4.52 | — | 4.1 | 0.010 | 1.26 | 0.0 | 0.94 | 10.33 | 0.01 | 2.078 | 8.88 | 0.15 | 8.3 | 91.5 | 0.2 | -4.08 | 0.83 | 0.83 | — | 4.1 | 0.008 | 1.57 | 0.0 | 0.29 | 11.95 | 0.00 | 2.089 | 15.73 | 0.00 | 5.9 | 94.1 | 0.0 | -0.68 | 1.38 | 0.83 | 0.84 | — | 60966 | 7685 | 49 | 0 | 12 | 0 | 0 | logfile |
✔ | 7VAK | 31845 | 2023-02-27 | 2021-08-30 | 4.7 | 3.87 | 4.25 | 4.0 | 0.003 | 0.55 | 0.0 | 0.04 | 13.32 | 0.00 | 2.115 | 9.01 | 0.00 | 2.9 | 97.1 | 0.0 | 0.43 | 0.71 | 0.75 | — | 3.8 | 0.004 | 0.68 | 0.0 | 0.05 | 14.06 | 0.00 | 2.126 | 11.26 | 0.00 | 4.7 | 95.3 | 0.0 | -0.10 | 1.25 | 0.72 | 0.77 | — | 29462 | 3788 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CB1 | 7445 | 2023-02-27 | 2018-02-01 | 4.6 | 4.77 | — | 4.6 | 0.006 | 1.02 | 0.0 | 0.06 | 16.94 | 0.00 | 0.266 | 5.97 | 0.00 | 5.0 | 94.8 | 0.1 | -2.68 | 0.66 | 0.49 | — | 4.5 | 0.004 | 0.79 | 0.0 | 0.04 | 18.17 | 0.00 | 2.026 | 21.56 | 0.00 | 8.9 | 91.1 | 0.0 | -1.66 | 2.04 | 0.75 | 0.75 | — | 69945 | 6459 | 42 | 1615 | 694 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2023-02-17 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.88 | 0.0 | 0.04 | 22.84 | 0.01 | 1.820 | 82.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.78 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 6oDJ | 20021 | 2023-02-25 | 2019-03-26 | 3.5 | 3.75 | — | 3.7 | 0.009 | 1.50 | 0.0 | 0.07 | 11.32 | 0.01 | 2.438 | 2.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.81 | — | 3.7 | 0.012 | 1.73 | 0.0 | 0.06 | 7.96 | 0.00 | 2.090 | 10.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.82 | 0.83 | — | 25415 | 0 | 17 | 0 | 5083 | 0 | 0 | logfile |
✔ | 6FU8 | 4319 | 2023-02-16 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.004 | 0.85 | 0.0 | 0.04 | 15.02 | 0.00 | 2.243 | 16.86 | 0.00 | 11.2 | 87.5 | 1.2 | -1.85 | 3.09 | 0.23 | 0.62 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 7JJJ | 22354 | 2023-02-22 | 2020-07-26 | 4.5 | 4.63 | 4.47 | 4.5 | 0.020 | 1.77 | 0.0 | 0.13 | 9.94 | 0.01 | 2.377 | 0.90 | 0.07 | 2.0 | 98.0 | 0.0 | 0.68 | 0.79 | 0.80 | — | 4.5 | 0.004 | 0.68 | 0.0 | 0.05 | 11.96 | 0.00 | 2.093 | 11.87 | 0.00 | 4.1 | 95.9 | 0.0 | 0.03 | 1.43 | 0.79 | 0.83 | — | 54614 | 6674 | 92 | 0 | 182 | 0 | 0 | logfile |
✔ | 6GiY | 0008 | 2023-02-26 | 2018-05-15 | 4.3 | 4.14 | — | 4.0 | 0.007 | 1.18 | 0.0 | 0.06 | 10.19 | 0.01 | 2.232 | 6.17 | 0.29 | 12.7 | 87.1 | 0.3 | -5.09 | 0.73 | 0.77 | — | 4.0 | 0.003 | 0.77 | 0.0 | 0.04 | 12.12 | 0.01 | 2.107 | 11.70 | 0.00 | 10.4 | 89.5 | 0.1 | -2.19 | 0.92 | 0.73 | 0.76 | — | 28969 | 3649 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GCS | 4384 | 2023-02-22 | 2018-04-19 | 4.32 | 4.51 | — | 4.3 | 0.010 | 1.35 | 3.0 | 0.97 | 12.02 | 0.01 | 2.231 | 8.78 | 0.73 | 13.4 | 85.9 | 0.8 | -4.79 | 0.77 | 0.78 | — | 4.3 | 0.009 | 1.69 | 0.0 | 0.30 | 12.66 | 0.00 | 2.049 | 20.00 | 0.00 | 13.2 | 86.5 | 0.3 | -2.20 | 0.78 | 0.78 | 0.79 | — | 55137 | 6864 | 53 | 0 | 667 | 0 | 0 | logfile |
✔ | 7TXZ | 26162 | 2023-02-20 | 2022-02-10 | 3.2 | 3.25 | 3.11 | 3.2 | 0.016 | 1.48 | 0.0 | 0.09 | 10.07 | 0.01 | 2.400 | 0.32 | 0.19 | 1.9 | 98.0 | 0.1 | 0.71 | 0.71 | 0.79 | 4.26 | 3.2 | 0.003 | 0.62 | 0.0 | 0.05 | 13.42 | 0.00 | 2.111 | 7.66 | 0.00 | 3.0 | 96.9 | 0.1 | 0.26 | 0.54 | 0.73 | 0.85 | 4.03 | 11303 | 1464 | 22 | 0 | 29 | 0 | 0 | logfile |
✔ | 5MS1 | 3562 | 2023-02-17 | 2016-12-29 | 4.25 | 4.22 | — | 4.2 | 0.014 | 1.51 | 0.0 | 0.07 | 9.30 | 0.01 | 2.413 | 2.10 | 0.00 | 5.5 | 93.5 | 1.1 | -0.81 | 0.37 | 0.76 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 12.42 | 0.00 | 2.162 | 9.67 | 0.00 | 2.9 | 97.1 | 0.0 | -0.77 | 1.54 | 0.46 | 0.85 | — | 4350 | 556 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2023-02-17 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 7.17 | 0.00 | 2.306 | 8.03 | 0.00 | 17.7 | 82.3 | 0.0 | -2.25 | 2.42 | 0.48 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B0i | 15784 | 2023-02-22 | 2022-09-07 | 4.28 | 5.23 | 4.35 | 4.5 | 0.012 | 1.98 | 1.0 | 0.11 | 22.56 | 0.01 | 1.911 | 8.92 | 0.14 | 5.1 | 94.9 | 0.0 | -1.62 | 0.77 | 0.61 | — | 4.5 | 0.002 | 0.59 | 0.0 | 0.04 | 20.65 | 0.00 | 1.974 | 14.00 | 0.00 | 5.1 | 94.9 | 0.0 | 0.38 | 1.42 | 0.80 | 0.74 | — | 17636 | 1075 | 5 | 103 | 0 | 0 | 7831 | logfile |
✔ | 7K8Y | 22735 | 2023-02-26 | 2020-09-27 | 4.4 | 5.34 | — | 4.4 | 0.002 | 0.53 | 0.0 | 0.05 | 10.71 | 0.00 | 1.137 | 21.70 | 0.04 | 2.8 | 97.0 | 0.3 | -2.11 | 0.80 | 0.77 | — | 4.4 | 0.005 | 0.75 | 0.0 | 0.05 | 11.59 | 0.00 | 1.985 | 25.96 | 0.00 | 7.4 | 92.5 | 0.2 | -1.14 | 1.18 | 0.82 | 0.83 | — | 25560 | 3242 | 8 | 0 | 23 | 0 | 0 | logfile |
✔ | 8D8Q | 27254 | 2023-02-17 | 2022-06-08 | 4.2 | 3.68 | 34.06 | 3.7 | 0.011 | 1.23 | 0.0 | 0.05 | 11.06 | 0.01 | 2.139 | 1.66 | 0.53 | 1.5 | 98.3 | 0.2 | 2.20 | 0.67 | 0.74 | — | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 13.12 | 0.00 | 2.133 | 12.14 | 0.00 | 4.1 | 95.9 | 0.0 | -0.21 | 1.02 | 0.67 | 0.75 | — | 5202 | 669 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6RDR | 4828 | 2023-02-21 | 2019-04-12 | 4.1 | 4.19 | 4.13 | 4.1 | 0.007 | 0.94 | 0.0 | 0.05 | 14.97 | 0.01 | 1.908 | 6.99 | 0.44 | 5.2 | 94.6 | 0.2 | -4.22 | 0.67 | 0.74 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 14.02 | 0.00 | 1.914 | 14.08 | 0.00 | 5.2 | 94.7 | 0.1 | -0.50 | 1.29 | 0.69 | 0.78 | — | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |