Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GC6	4381	2021-01-08	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.26	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.009	0.84	0.0	0.04	16.32	0.01	1.996	37.74	0.00	10.2	89.8	0.0	-2.55	2.23	0.91	0.86	—	61404	2118	19	2092	0	0	0	logfile
✔	6GYL	0091	2021-01-07	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.13	0.16	6.2	92.7	1.1	-3.33	0.32	0.00	—	3.3	0.003	0.79	0.0	0.04	14.39	0.01	2.097	19.63	0.00	7.2	92.6	0.2	-1.51	2.19	0.51	0.21	—	43409	5250	30	112	11	0	0	logfile
✔	6GC8	4383	2021-01-06	2018-04-17	3.8	4.18	—	3.9	0.002	0.57	0.0	0.03	12.93	0.00	2.129	3.87	0.16	6.3	93.5	0.2	-4.04	0.71	0.60	0.92	3.9	0.008	0.83	0.0	0.04	16.16	0.01	1.921	31.65	0.00	11.8	87.9	0.3	-2.53	2.96	0.83	0.79	0.66	88884	3090	42	3016	6	42	0	logfile
✔	6NQB	0482	2021-01-07	2019-01-20	3.8	4.35	—	4.0	0.006	0.98	0.0	0.05	17.60	0.01	2.216	7.98	0.41	13.6	86.3	0.1	-5.36	0.86	0.79	0.88	4.0	0.003	0.67	0.0	0.04	17.31	0.01	2.040	20.76	0.00	13.5	86.5	0.1	-3.02	0.84	0.86	0.79	0.63	42570	1752	17	1341	1	0	0	logfile
✔	3JAD	6344	2021-01-05	2015-06-08	3.9	2.16	—	3.8	0.013	1.36	0.0	0.07	9.02	0.01	2.250	16.45	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	2.6	0.003	0.76	0.0	0.04	12.02	0.00	2.123	16.91	0.00	4.7	95.3	0.0	0.57	1.28	0.70	0.77	0.37	12705	1685	10	0	15	0	0	logfile
✔	5LMo	4074	2021-01-08	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.37	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.004	0.72	0.0	0.04	16.61	0.01	1.159	32.03	0.00	8.4	90.9	0.7	-1.61	2.22	0.87	0.83	—	54110	2622	29	1533	110	0	0	logfile
✔	6BCQ	7085	2021-01-06	2017-10-20	3.25	3.34	—	3.3	0.007	1.00	0.0	0.05	9.82	0.01	2.318	3.48	0.25	5.5	94.5	0.0	-4.85	0.64	0.80	3.09	3.3	0.006	0.73	0.0	0.04	12.90	0.01	2.138	8.27	0.00	5.6	94.4	0.0	0.92	0.86	0.64	0.80	2.01	31048	3932	8	0	4	0	0	logfile
✔	6CoZ	7545	2021-01-05	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.004	0.88	0.0	0.04	6.14	0.00	2.319	9.28	0.00	17.9	82.1	0.0	-2.45	1.69	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	3JAF	6346	2021-01-05	2015-06-08	3.8	2.26	—	3.8	0.015	1.30	0.0	0.41	10.07	0.01	2.134	18.84	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.003	1.22	0.0	0.13	12.50	0.00	2.177	16.38	0.00	3.1	96.9	0.0	0.39	1.83	0.72	0.81	1.19	13865	1710	10	0	15	0	0	logfile
✔	6RZB	10061	2021-01-05	2019-06-13	4.1	4.19	3.09	4.2	0.014	1.87	5.0	0.12	17.68	0.01	2.096	9.24	5.37	4.2	95.5	0.3	-2.81	0.68	0.84	—	4.1	0.003	0.73	0.0	0.04	14.66	0.00	1.965	15.57	0.00	2.5	97.5	0.0	0.19	1.48	0.68	0.82	—	8001	1001	5	1	3	0	0	logfile
✔	5WFE	8827	2021-01-06	2017-07-11	3.64	4.04	—	3.8	0.004	0.66	0.0	0.04	22.67	0.00	1.891	14.72	0.09	4.6	95.3	0.1	-1.79	0.80	0.67	1.90	3.8	0.004	0.71	0.0	0.04	23.02	0.00	2.093	16.04	0.00	3.5	96.5	0.0	0.65	2.32	0.83	0.74	1.59	15523	1447	12	210	0	0	0	logfile
✔	5LMU	4080	2021-01-08	2016-08-01	4.0	4.12	4.00	4.0	0.008	1.44	43.0	0.12	21.32	0.01	1.289	21.06	25.30	12.0	84.2	3.8	-2.57	0.73	0.79	—	4.0	0.006	0.84	0.0	0.04	16.70	0.01	1.811	29.47	0.00	8.9	90.6	0.5	-1.55	0.94	0.76	0.83	—	55195	2550	29	1612	82	0	0	logfile
✔	6HLR	0240	2021-01-07	2018-09-11	3.18	3.30	—	3.3	0.008	0.94	0.0	0.06	12.28	0.01	1.734	4.70	0.15	4.9	95.1	0.0	-4.37	0.70	0.84	4.14	3.2	0.005	0.69	0.0	0.05	14.45	0.00	1.996	9.35	0.00	4.2	95.8	0.0	-0.38	1.64	0.72	0.86	3.48	32370	3881	21	73	8	0	0	logfile
✔	6HLS	0241	2021-01-06	2018-09-11	3.21	3.27	—	3.3	0.007	0.95	0.0	0.06	10.21	0.01	2.231	5.17	0.32	5.4	94.6	0.0	-4.54	0.64	0.82	4.01	3.3	0.003	0.63	0.0	0.04	13.27	0.00	2.113	8.90	0.00	3.6	96.4	0.0	-0.72	1.27	0.65	0.83	3.20	30954	3896	17	0	7	0	0	logfile
✔	6HLQ	0239	2021-01-07	2018-09-11	3.18	3.18	—	3.2	0.006	0.89	0.0	0.06	12.12	0.01	1.742	5.16	0.09	4.6	95.4	0.0	-4.49	0.68	0.82	4.22	3.2	0.003	0.62	0.0	0.04	14.32	0.00	1.999	8.43	0.00	3.2	96.8	0.0	-0.48	0.71	0.69	0.84	3.67	32731	3926	22	73	9	0	0	logfile
✔	6R25	4710	2021-01-06	2019-03-15	4.61	8.06	—	3.8	0.009	1.04	0.0	0.06	25.67	0.02	1.036	12.48	5.67	4.9	93.8	1.3	-2.97	0.74	0.45	—	3.9	0.006	0.70	0.0	0.04	26.20	0.00	1.948	23.73	0.00	3.5	96.4	0.1	0.84	1.59	0.89	0.73	—	18654	1544	16	294	4	314	0	logfile
✔	5ooE	3838	2021-01-05	2017-08-07	3.6	3.72	3.50	3.7	0.016	1.60	0.0	0.07	11.01	0.02	1.939	3.24	0.00	4.8	93.2	2.0	-1.39	0.68	0.85	2.69	3.7	0.003	0.63	0.0	0.04	13.43	0.00	2.065	9.27	0.00	3.3	96.7	0.0	0.75	2.67	0.68	0.85	2.85	14310	1810	10	0	10	0	0	logfile
✔	6R1U	4705	2021-01-06	2019-03-15	4.36	6.44	—	3.8	0.008	1.04	0.0	0.06	25.75	0.02	0.544	11.63	6.26	4.7	94.1	1.2	-2.99	0.73	0.45	—	3.9	0.003	0.64	0.0	0.04	25.52	0.00	2.050	13.52	0.00	2.6	97.4	0.1	0.94	1.26	0.89	0.77	—	18394	1550	14	294	4	0	0	logfile
✔	5ooF	3839	2021-01-05	2017-08-07	3.4	3.53	3.41	3.5	0.015	1.54	0.0	0.08	11.80	0.02	2.010	2.86	0.00	6.3	91.0	2.7	-1.40	0.71	0.85	2.69	3.5	0.007	0.79	0.0	0.05	13.83	0.00	2.004	8.67	0.00	4.3	95.1	0.5	-0.19	2.16	0.70	0.86	2.58	14640	1855	10	0	10	0	0	logfile
✔	6KiW	0693	2021-01-06	2019-07-20	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	22.54	0.01	2.182	4.29	0.00	9.1	90.9	0.0	-3.96	0.70	0.74	—	4.0	0.003	0.64	0.0	0.04	23.05	0.00	2.102	11.74	0.00	7.6	92.4	0.0	-1.21	0.78	0.70	0.73	—	20225	1809	16	289	1	0	0	logfile

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