Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6LHW	0901	2023-02-21	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.027	44.00	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	6B5V	7058	2023-02-23	2017-09-29	4.8	4.85	—	4.8	0.008	1.23	0.0	0.06	13.98	0.01	2.333	9.06	3.55	5.9	94.1	0.0	-4.79	0.61	0.72	—	4.8	0.003	0.80	0.0	0.04	13.10	0.00	2.149	12.86	0.00	6.5	93.5	0.0	-1.76	0.89	0.70	0.81	—	18933	2356	8	0	5	0	0	logfile
✔	5LJo	4061	2023-02-25	2016-07-19	4.9	7.28	—	5.9	0.014	1.69	1.0	0.08	11.01	0.01	2.147	5.45	0.15	9.4	86.8	3.8	-2.52	0.69	0.58	—	5.9	0.003	0.67	0.0	0.04	12.72	0.00	1.935	15.16	0.00	10.8	88.9	0.3	-2.08	1.31	0.79	0.79	—	24947	1624	5	0	0	0	12255	logfile
✔	6T8G	10400	2023-02-22	2019-10-24	4.34	4.41	—	4.3	0.008	1.12	0.0	0.06	13.12	0.01	2.228	7.19	0.15	10.2	89.8	0.0	-4.29	0.81	0.83	—	4.3	0.004	0.81	0.0	0.05	14.28	0.00	2.106	16.21	0.00	6.7	93.3	0.0	-0.84	1.37	0.82	0.83	—	18875	2367	14	32	6	0	0	logfile
✔	6PoM	20416	2023-02-17	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.28	0.0	0.06	21.46	0.01	1.930	61.80	0.00	0.0	0.0	0.0	—	1.76	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7WB1	32392	2023-02-20	2021-12-15	3.7	3.09	—	3.0	0.003	0.59	0.0	0.04	19.51	0.00	2.046	11.12	0.00	4.7	95.2	0.1	0.55	0.83	0.75	0.94	3.0	0.003	0.61	0.0	0.04	20.37	0.00	2.084	14.67	0.00	5.2	94.8	0.0	0.33	1.01	0.83	0.76	1.29	11524	960	4	178	0	0	0	logfile
✔	7XZX	33533	2023-02-23	2022-06-03	4.53	5.42	4.49	4.5	0.006	0.99	0.0	0.06	25.64	0.00	1.688	10.77	0.15	1.7	98.3	0.0	0.69	0.69	0.37	—	4.4	0.004	0.65	0.0	0.04	25.63	0.00	2.095	14.00	0.00	2.6	97.4	0.0	1.09	1.71	0.90	0.82	—	19270	1554	14	342	0	0	0	logfile
✔	6HiS	0228	2023-02-22	2018-08-30	4.5	4.60	—	4.5	0.010	1.55	0.0	0.08	11.89	0.01	2.228	16.64	0.29	4.9	95.1	0.0	-2.60	0.76	0.77	—	4.5	0.003	0.77	0.0	0.05	13.36	0.00	2.228	13.02	0.00	7.8	92.2	0.0	-1.77	0.93	0.76	0.77	—	16240	1935	25	0	40	0	0	logfile
✔	7SWo	25477	2023-02-17	2021-11-20	4.1	3.78	—	3.8	0.007	0.89	0.0	0.05	14.43	0.01	2.215	26.02	0.19	10.0	90.0	0.0	-2.59	0.65	0.76	—	3.8	0.003	0.72	0.0	0.05	13.81	0.01	2.118	18.05	0.00	6.0	94.0	0.0	-1.25	0.53	0.64	0.74	—	4784	627	3	0	0	0	0	logfile
✔	6oAA	0666	2023-02-23	2019-03-15	4.1	4.22	4.19	4.2	0.006	1.06	1.0	0.05	16.65	0.01	1.317	13.46	0.34	8.3	91.5	0.3	-5.52	0.63	0.70	—	4.2	0.003	0.83	0.0	0.05	15.51	0.00	1.082	14.28	0.00	9.7	90.2	0.1	-2.15	0.88	0.66	0.75	—	19546	2494	10	0	14	0	0	logfile
✔	6K9L	9950	2023-02-27	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.75	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.68	0.0	0.04	9.69	0.00	2.113	12.20	0.00	7.1	92.9	0.0	0.72	1.80	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	7VPZ	32077	2023-02-27	2021-10-18	4.14	4.38	4.16	4.1	0.005	0.79	1.0	0.05	18.57	0.00	1.887	6.54	0.52	3.6	96.3	0.0	-0.02	0.81	0.71	—	4.2	0.003	0.69	0.0	0.04	18.61	0.00	1.968	17.15	0.00	3.2	96.8	0.0	-0.08	0.71	0.83	0.75	—	30593	3474	14	173	9	0	0	logfile
✔	5YYS	6859	2023-02-24	2017-12-11	4.2	4.57	—	4.1	0.016	2.26	0.0	0.10	15.30	0.01	2.201	22.76	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.005	1.30	0.0	0.06	12.76	0.01	2.047	36.43	0.00	24.1	75.3	0.6	-3.96	1.66	0.87	0.73	—	24044	3244	4	0	0	0	0	logfile
✔	6UA2	20704	2023-02-28	2019-09-10	4.2	4.44	4.05	4.4	0.017	1.74	0.0	0.08	16.71	0.01	2.191	14.11	4.10	11.3	88.7	0.1	-4.76	0.65	0.78	—	4.4	0.003	0.92	0.0	0.05	14.43	0.01	2.104	22.04	0.00	8.5	91.4	0.0	-2.75	1.68	0.64	0.76	—	31660	4016	24	0	36	0	0	logfile
✔	6PEK	20327	2023-02-20	2019-06-20	4.2	4.25	—	4.2	0.005	0.73	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.74	0.0	0.04	14.87	0.00	1.129	14.37	0.00	3.0	97.0	0.0	-0.34	0.99	0.71	0.77	—	11106	1405	11	0	13	0	0	logfile
✔	8AUR	15673	2023-02-17	2022-08-25	3.47	3.44	3.63	3.6	0.002	0.54	0.0	0.04	13.41	0.00	2.350	6.62	0.00	5.6	94.4	0.0	-1.30	0.72	0.82	2.41	3.5	0.004	0.66	0.0	0.04	16.10	0.00	2.233	7.09	0.00	9.4	90.5	0.1	-1.38	1.66	0.71	0.83	2.56	5409	699	3	0	0	0	0	logfile
✔	5L08	8300	2023-02-21	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.99	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.5	0.006	1.23	0.0	0.06	14.56	0.01	1.854	41.71	0.00	6.7	93.3	0.0	-3.29	3.82	0.26	0.71	—	13617	1629	9	0	0	0	0	logfile
✔	6N7S	0362	2023-02-20	2018-11-28	4.6	4.47	—	4.4	0.008	1.20	0.0	0.07	14.87	0.01	1.812	8.33	1.04	12.5	87.5	0.0	-5.07	0.69	0.54	—	4.3	0.003	0.71	0.0	0.04	14.71	0.00	1.879	15.87	0.00	5.3	94.7	0.0	-2.15	1.90	0.71	0.59	—	12783	1607	11	13	8	0	0	logfile
✔	6ZY4	11549	2023-02-21	2020-07-30	4.1	4.37	—	4.1	0.003	0.80	0.0	0.05	13.50	0.01	2.314	3.85	0.00	4.9	95.1	0.0	-5.91	0.73	0.74	—	4.1	0.003	0.77	0.0	0.04	12.71	0.00	1.965	11.98	0.00	5.4	94.6	0.0	-1.71	2.49	0.76	0.79	—	14902	1978	14	0	4	0	0	logfile
✔	7RZQ	24774	2023-02-16	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile

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