Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CB1	7445	2023-08-17	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.97	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.004	0.78	0.0	0.04	17.69	0.00	2.044	20.20	0.00	8.1	91.9	0.0	-1.18	1.99	0.75	0.75	—	69945	6459	42	1615	694	0	0	logfile
✔	6RFS	4874	2023-08-11	2019-04-16	4.04	4.52	—	4.1	0.010	1.26	0.0	0.94	10.33	0.01	2.078	8.88	0.15	8.3	91.5	0.2	-4.08	0.83	0.83	—	4.1	0.008	1.57	0.0	0.29	11.95	0.00	2.089	15.73	0.00	5.9	94.1	0.0	-0.68	1.38	0.83	0.84	—	60966	7685	49	0	12	0	0	logfile
✔	8B0i	15784	2023-08-15	2022-09-07	4.28	5.23	4.35	4.5	0.012	1.98	1.0	0.11	22.56	0.01	1.911	8.92	0.14	5.1	94.9	0.0	-1.62	0.77	0.61	—	4.5	0.002	0.59	0.0	0.04	20.65	0.00	1.974	14.00	0.00	5.1	94.9	0.0	0.38	1.42	0.80	0.74	—	17636	1075	5	103	0	0	7831	logfile
✔	7SAM	24952	2023-08-09	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7Q59	13829	2023-08-26	2021-11-03	4.36	4.89	—	4.4	0.003	0.63	0.0	0.04	10.22	0.00	1.925	6.09	0.72	3.6	96.4	0.0	-0.17	0.79	0.65	—	4.4	0.003	0.66	0.0	0.04	11.81	0.00	2.036	13.79	0.00	3.7	96.3	0.0	-0.11	1.44	0.90	0.83	—	47632	6118	14	0	6	0	0	logfile
✔	6GJ3	0010	2023-08-15	2018-05-15	4.3	4.02	—	3.9	0.008	1.19	0.0	0.06	10.34	0.01	2.248	5.14	0.37	13.5	86.2	0.3	-4.76	0.71	0.78	—	3.9	0.003	0.73	0.0	0.04	12.36	0.01	2.209	10.28	0.00	10.8	89.2	0.0	-1.74	0.76	0.71	0.78	—	17405	2194	7	0	0	0	0	logfile
✔	7Q8S	13865	2023-08-16	2021-11-11	3.4	3.39	3.35	3.3	0.002	0.44	0.0	0.04	8.15	0.00	2.222	3.32	0.23	2.1	97.9	0.0	1.31	0.68	0.86	4.17	3.3	0.003	0.56	0.0	0.05	12.98	0.00	2.140	4.19	0.00	3.2	96.8	0.0	0.86	0.55	0.70	0.89	3.69	19665	2485	15	0	10	0	0	logfile
✔	6GCS	4384	2023-08-10	2018-04-19	4.32	4.51	—	4.3	0.010	1.35	3.0	0.97	12.02	0.01	2.231	8.79	0.73	13.4	85.9	0.8	-4.79	0.77	0.78	—	4.3	0.009	1.69	0.0	0.30	12.66	0.00	2.049	20.03	0.00	13.2	86.5	0.3	-2.20	0.78	0.78	0.79	—	55137	6864	53	0	667	0	0	logfile
✔	7VAK	31845	2023-08-20	2021-08-30	4.7	3.87	4.25	4.0	0.003	0.55	0.0	0.04	13.32	0.00	2.115	9.01	0.00	2.9	97.1	0.0	0.43	0.71	0.75	—	3.8	0.004	0.68	0.0	0.05	14.06	0.00	2.126	11.27	0.00	4.7	95.3	0.0	-0.10	1.25	0.72	0.77	—	29462	3788	12	0	0	0	0	logfile
✔	7K8Y	22735	2023-08-19	2020-09-27	4.4	5.34	—	4.4	0.003	0.55	0.0	0.05	10.63	0.00	1.137	21.70	0.04	2.8	97.0	0.3	-2.11	0.80	0.77	—	4.4	0.002	0.60	0.0	0.04	11.27	0.00	2.109	12.37	0.00	3.6	96.2	0.1	-0.32	1.11	0.81	0.81	—	25560	3242	8	0	23	0	0	logfile
✔	7NVW	12615	2023-08-17	2021-03-16	4.3	4.32	4.26	4.2	0.002	0.45	0.0	0.04	15.45	0.00	1.971	6.64	0.00	4.4	95.6	0.0	0.80	0.71	0.66	—	4.2	0.003	0.70	0.0	0.04	15.77	0.00	2.146	15.97	0.00	4.7	95.2	0.0	-0.42	1.05	0.73	0.68	—	23647	2814	17	42	35	0	0	logfile
✔	8BD6	15976	2023-08-20	2022-10-18	4.1	5.46	4.05	4.2	0.009	1.37	18.0	0.09	21.21	0.01	1.062	17.28	8.81	2.2	97.8	0.0	-2.08	0.71	0.61	—	3.7	0.003	0.72	0.0	0.04	18.32	0.00	1.857	26.12	0.00	4.7	95.3	0.0	-1.16	2.03	0.74	0.63	—	29951	2900	24	313	18	0	0	logfile
✔	7SSV	25414	2023-08-13	2021-11-11	3.39	3.66	—	3.6	0.018	1.72	20.0	0.11	14.84	0.01	2.215	4.74	6.26	6.6	93.4	0.0	-3.22	0.64	0.81	2.90	3.7	0.002	0.61	0.0	0.04	15.24	0.00	2.239	5.42	0.00	3.9	96.1	0.1	0.91	1.10	0.66	0.85	1.83	13815	1874	8	0	3	0	0	logfile
✔	8HAK	34594	2023-08-14	2022-10-26	4.5	4.61	4.45	3.6	0.003	0.65	0.0	0.04	24.84	0.00	2.214	12.85	0.00	2.2	97.8	0.0	0.55	0.87	0.75	—	3.6	0.004	0.67	0.0	0.04	26.53	0.00	2.177	17.46	0.00	3.3	96.7	0.0	0.66	0.82	0.89	0.81	—	16342	1285	11	292	0	0	0	logfile
✔	7NG4	12307	2023-08-18	2021-02-08	4.4	5.07	4.36	3.9	0.010	1.37	0.0	0.06	13.12	0.01	1.977	6.38	0.12	7.3	92.7	0.0	-2.19	0.89	0.78	—	3.9	0.003	0.57	0.0	0.04	12.78	0.00	1.773	12.19	0.00	4.7	95.3	0.0	-0.92	0.97	0.88	0.79	—	74624	4656	13	0	31	0	37485	logfile
✔	6FU8	4319	2023-08-09	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	5MS1	3562	2023-08-09	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.003	0.67	0.0	0.04	12.79	0.00	2.136	9.78	0.00	2.9	97.1	0.0	-0.39	1.54	0.46	0.85	—	4350	556	2	0	0	0	0	logfile
✔	8SB3	40289	2023-08-24	2023-04-02	4.1	4.41	4.14	4.2	0.007	1.04	0.0	0.05	14.16	0.01	2.138	2.68	0.00	7.6	91.9	0.5	-2.11	0.74	0.73	—	4.2	0.004	0.71	0.0	0.04	13.52	0.00	1.922	14.29	0.00	9.3	90.3	0.5	-2.28	1.35	0.77	0.78	—	38690	2460	24	0	79	0	18600	logfile
✔	7JLX	22383	2023-08-09	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7JJJ	22354	2023-08-10	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.79	0.0	0.13	10.01	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.71	0.0	0.05	12.38	0.00	2.113	11.30	0.00	4.0	96.0	0.0	-0.22	1.44	0.80	0.83	—	54614	6674	92	0	182	0	0	logfile

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