Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZQA	11357	2022-04-07	2020-07-09	4.4	4.48	—	4.4	0.006	1.11	1.0	0.06	14.62	0.01	1.928	5.28	0.00	9.3	90.4	0.3	-3.27	0.77	0.74	—	4.4	0.006	1.02	0.0	0.05	15.88	0.00	1.743	13.83	0.00	17.3	82.6	0.1	-3.00	1.31	0.76	0.74	—	125991	19047	63	1485	5	0	0	logfile
✔	7DL2	30708	2022-04-06	2020-11-25	4.4	4.72	—	4.3	0.006	0.88	1.0	0.06	13.74	0.00	2.198	35.54	1.11	10.1	89.8	0.1	-3.66	0.81	0.80	—	4.3	0.003	0.67	0.0	0.04	13.51	0.00	2.145	15.77	0.00	6.4	93.6	0.0	0.16	0.58	0.82	0.81	—	23285	2886	6	0	203	0	0	logfile
✔	7K1K	22625	2022-04-08	2020-09-07	4.1	4.21	—	4.1	0.008	1.12	0.0	0.06	17.45	0.01	2.224	7.16	0.91	14.0	85.5	0.4	-5.07	0.73	0.74	—	4.2	0.003	0.72	0.0	0.04	16.14	0.00	2.096	10.71	0.00	10.6	89.3	0.1	-1.74	1.32	0.72	0.72	—	38243	4620	7	74	0	0	0	logfile
✔	7KJX	22901	2022-04-04	2020-10-26	3.1	3.33	—	3.3	0.006	0.72	0.0	0.04	14.00	0.01	2.100	5.38	0.12	2.3	97.7	0.0	0.94	0.71	0.81	2.85	3.3	0.003	0.52	0.0	0.04	15.40	0.00	1.995	8.49	0.00	2.6	97.4	0.0	0.73	0.46	0.77	0.86	3.03	8589	948	5	44	2	0	0	logfile
✔	7CN0	30412	2022-04-04	2020-07-29	3.9	3.96	—	3.9	0.004	0.62	0.0	0.04	13.32	0.00	1.843	14.90	0.00	8.1	91.9	0.0	-2.90	0.55	0.77	2.36	3.9	0.002	0.65	0.0	0.04	15.93	0.00	2.289	10.80	0.00	6.7	93.3	0.0	0.29	0.62	0.55	0.76	0.83	6602	884	5	0	2	0	0	logfile
✔	7LYP	23598	2022-04-06	2021-03-07	4.05	4.38	—	4.1	0.012	1.72	5.0	0.09	12.77	0.02	1.562	0.95	1.02	6.8	92.4	0.7	-1.35	0.76	0.72	—	4.1	0.004	0.64	0.0	0.04	12.55	0.00	2.140	11.26	0.00	5.1	94.9	0.0	-0.28	0.71	0.83	0.82	—	23506	2985	6	0	28	0	0	logfile
✔	7o1Q	12696	2022-04-08	2021-03-30	3.4	3.81	—	3.4	0.007	0.55	0.0	0.05	9.97	0.00	2.129	4.28	0.39	2.7	97.3	0.0	-0.21	0.85	0.81	4.50	3.5	0.004	0.54	0.0	0.05	13.14	0.00	2.003	7.15	0.00	3.7	96.3	0.0	0.27	2.17	0.80	0.81	4.18	32434	2051	7	0	0	0	15921	logfile
✔	7K8Y	22735	2022-04-07	2020-09-27	4.4	5.34	—	4.4	0.002	0.53	0.0	0.05	10.71	0.00	1.137	21.70	0.04	2.8	97.0	0.3	-2.11	0.80	0.77	—	4.4	0.002	0.58	0.0	0.04	11.36	0.00	2.095	12.54	0.00	3.7	96.1	0.1	-0.30	1.09	0.81	0.81	—	25560	3242	8	0	23	0	0	logfile
✔	7KCH	22808	2022-04-05	2020-10-05	4.33	4.50	4.30	4.3	0.011	1.07	0.0	0.06	16.55	0.01	2.175	19.21	4.72	10.5	89.5	0.0	-4.19	0.49	0.52	—	4.3	0.003	0.70	0.0	0.04	14.01	0.00	1.977	11.16	0.00	6.1	93.9	0.0	-0.17	1.69	0.58	0.83	—	12248	1805	7	0	6	0	0	logfile
✔	6X64	22069	2022-04-05	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.24	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	6Y5D	10694	2022-04-07	2020-02-25	4.1	5.00	—	4.0	0.013	1.23	0.0	0.07	25.87	0.01	2.251	1.62	0.11	2.0	97.9	0.1	0.59	0.86	0.76	—	4.0	0.003	0.61	0.0	0.03	26.23	0.00	1.921	12.80	0.00	2.4	97.6	0.0	1.11	1.25	0.88	0.81	—	30372	2218	31	612	11	0	0	logfile
✔	7LWi	23546	2022-04-07	2021-03-01	3.07	3.28	—	3.2	0.013	1.78	4.0	0.09	12.99	0.01	2.482	0.15	0.31	5.6	94.2	0.2	-1.24	0.72	0.74	3.32	3.2	0.003	0.64	0.0	0.04	14.88	0.01	2.107	5.66	0.00	3.3	96.6	0.1	0.35	1.66	0.72	0.79	2.22	23847	3003	6	0	30	0	0	logfile
✔	7KEW	22841	2022-04-05	2020-10-13	4.16	4.63	—	4.4	0.021	1.87	3.0	0.11	9.60	0.01	2.402	0.73	0.00	3.2	96.5	0.4	0.12	0.59	0.68	—	4.4	0.004	0.82	0.0	0.05	12.77	0.01	2.102	17.04	0.00	7.6	92.4	0.0	-1.15	1.65	0.61	0.74	—	13173	1650	21	0	24	0	0	logfile
✔	7LBY	23267	2022-04-05	2021-01-09	4.2	4.35	—	4.3	0.003	0.78	0.0	0.05	12.33	0.00	2.148	4.15	0.00	6.2	92.5	1.3	-0.24	0.56	0.69	—	4.3	0.006	0.74	0.0	0.05	12.03	0.01	1.980	9.73	0.00	9.4	90.3	0.4	-0.03	0.62	0.58	0.72	—	8800	1418	2	0	0	0	0	logfile
✔	6M4D	30076	2022-04-05	2020-03-06	4.4	4.58	—	4.3	0.007	0.84	0.0	0.05	31.38	0.01	2.074	25.84	0.71	6.6	92.8	0.6	-2.81	0.88	0.82	—	4.3	0.004	0.71	0.0	0.04	30.65	0.01	2.146	20.45	0.00	2.4	97.1	0.5	0.15	0.95	0.88	0.82	—	10497	682	10	250	0	0	0	logfile
✔	7ELB	31179	2022-04-08	2021-04-09	4.1	4.43	—	4.1	0.002	0.59	0.0	0.04	13.34	0.00	2.021	9.17	2.07	8.6	91.4	0.0	-3.36	0.80	0.69	—	4.1	0.003	0.74	0.0	0.04	13.09	0.00	2.119	14.54	0.00	10.4	89.6	0.0	-1.19	1.46	0.83	0.74	—	31012	3972	8	0	10	0	0	logfile
✔	7JLX	22383	2022-04-04	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6WKT	21708	2022-04-04	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.59	0.0	0.03	15.90	0.00	2.202	10.79	0.00	4.8	95.2	0.0	3.63	1.34	0.65	0.75	3.76	3152	424	4	0	0	0	0	logfile
✔	7Mo7	23919	2022-04-06	2021-05-01	4.8	4.76	—	4.3	0.004	0.73	0.0	0.05	14.04	0.00	2.126	18.99	0.00	5.2	94.8	0.0	-1.19	0.80	0.74	—	4.3	0.002	0.64	0.0	0.05	13.54	0.00	2.153	17.97	0.00	4.7	95.3	0.0	-1.19	0.53	0.82	0.78	—	18135	2329	5	0	6	0	0	logfile
✔	7oH7	12896	2022-04-05	2021-05-09	3.8	4.09	3.79	3.9	0.004	0.82	0.0	0.04	11.31	0.00	2.086	6.93	1.20	4.7	95.3	0.0	-3.01	0.64	0.69	1.65	3.9	0.003	0.68	0.0	0.04	14.30	0.00	1.960	12.95	0.00	3.3	96.7	0.0	-0.64	1.67	0.65	0.72	1.26	11552	1414	6	0	11	3	0	logfile

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