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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NVW | 12615 | 2023-04-26 | 2021-03-16 | 4.3 | 4.32 | 4.26 | 4.2 | 0.002 | 0.45 | 0.0 | 0.04 | 15.45 | 0.00 | 1.971 | 6.64 | 0.00 | 4.4 | 95.6 | 0.0 | 0.80 | 0.71 | 0.66 | — | 4.2 | 0.003 | 0.70 | 0.0 | 0.04 | 15.77 | 0.00 | 2.146 | 15.97 | 0.00 | 4.7 | 95.2 | 0.0 | -0.42 | 1.05 | 0.73 | 0.68 | — | 23647 | 2814 | 17 | 42 | 35 | 0 | 0 | logfile |
✔ | 6LN9 | 0928 | 2023-04-20 | 2019-12-28 | 3.4 | 3.61 | 3.06 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 12.32 | 0.00 | 2.075 | 7.70 | 0.00 | 4.1 | 95.9 | 0.0 | -3.36 | 0.63 | 0.73 | 1.41 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.72 | 0.00 | 1.333 | 10.18 | 0.00 | 4.3 | 95.7 | 0.0 | -0.24 | 0.52 | 0.62 | 0.75 | 1.21 | 7612 | 987 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7K8Y | 22735 | 2023-04-28 | 2020-09-27 | 4.4 | 5.34 | — | 4.4 | 0.003 | 0.55 | 0.0 | 0.05 | 10.63 | 0.00 | 1.137 | 21.70 | 0.04 | 2.8 | 97.0 | 0.3 | -2.11 | 0.80 | 0.77 | — | 4.4 | 0.002 | 0.60 | 0.0 | 0.04 | 11.27 | 0.00 | 2.109 | 12.37 | 0.00 | 3.6 | 96.2 | 0.1 | -0.32 | 1.11 | 0.81 | 0.81 | — | 25560 | 3242 | 8 | 0 | 23 | 0 | 0 | logfile |
✔ | 7VVo | 32146 | 2023-04-20 | 2021-11-06 | 4.1 | 2.82 | 3.93 | 4.0 | 0.014 | 1.88 | 0.0 | 0.09 | 15.54 | 0.01 | 2.158 | 9.28 | 3.81 | 4.5 | 95.5 | 0.1 | -1.84 | 0.70 | 0.74 | — | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 13.97 | 0.00 | 2.115 | 12.08 | 0.00 | 3.2 | 96.8 | 0.0 | 0.24 | 2.35 | 0.69 | 0.69 | — | 7942 | 1059 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KCQ | 22817 | 2023-04-21 | 2020-10-07 | 3.2 | 3.31 | — | 3.3 | 0.011 | 0.80 | 0.0 | 0.06 | 15.99 | 0.00 | 1.987 | 7.49 | 7.09 | 6.1 | 93.9 | 0.0 | -4.00 | 0.77 | 0.87 | 4.16 | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 15.79 | 0.00 | 2.137 | 8.90 | 0.00 | 2.6 | 97.4 | 0.0 | -0.22 | 1.13 | 0.75 | 0.87 | 3.47 | 10332 | 1388 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7PHG | 13415 | 2023-04-20 | 2021-08-17 | 4.3 | 4.13 | — | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 13.71 | 0.00 | 1.916 | 18.40 | 0.00 | 11.9 | 88.1 | 0.0 | -3.68 | 0.78 | 0.67 | — | 4.0 | 0.004 | 0.66 | 0.0 | 0.04 | 13.37 | 0.00 | 1.921 | 20.25 | 0.00 | 11.6 | 88.4 | 0.0 | -3.54 | 1.28 | 0.78 | 0.67 | — | 6469 | 427 | 3 | 0 | 0 | 0 | 3160 | logfile |
✔ | 6FU8 | 4319 | 2023-04-19 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.004 | 0.85 | 0.0 | 0.04 | 15.02 | 0.00 | 2.243 | 16.86 | 0.00 | 11.2 | 87.5 | 1.2 | -1.85 | 3.09 | 0.23 | 0.62 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 7QGU | 13959 | 2023-04-28 | 2021-12-10 | 4.75 | 7.20 | — | 5.6 | 0.010 | 1.50 | 1.0 | 0.04 | 15.78 | 0.02 | 1.064 | 11.45 | 0.26 | 6.6 | 91.0 | 2.3 | -1.82 | 0.70 | 0.57 | — | 5.5 | 0.009 | 1.09 | 0.0 | 0.05 | 20.48 | 0.01 | 1.102 | 77.49 | 0.00 | 10.9 | 88.3 | 0.8 | -1.78 | 2.90 | 0.82 | 0.84 | — | 135606 | 5791 | 54 | 4656 | 0 | 0 | 0 | logfile |
✔ | 7TPK | 26058 | 2023-04-19 | 2022-01-25 | 3.4 | 3.41 | — | 3.4 | 0.011 | 1.40 | 1.0 | 0.08 | 9.69 | 0.01 | 2.528 | 2.12 | 0.00 | 4.7 | 95.3 | 0.0 | -0.98 | 0.60 | 0.72 | 4.39 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.27 | 0.00 | 2.331 | 4.95 | 0.00 | 4.2 | 95.8 | 0.0 | -1.45 | 1.26 | 0.65 | 0.81 | 3.26 | 1484 | 194 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8D8Q | 27254 | 2023-04-20 | 2022-06-08 | 4.2 | 3.68 | 34.06 | 3.7 | 0.012 | 1.23 | 0.0 | 0.05 | 11.07 | 0.01 | 2.139 | 1.66 | 0.53 | 1.5 | 98.3 | 0.2 | 2.20 | 0.67 | 0.74 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.05 | 13.10 | 0.00 | 2.150 | 16.15 | 0.00 | 4.9 | 95.1 | 0.0 | -0.72 | 1.04 | 0.67 | 0.76 | — | 5202 | 669 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7NG4 | 12307 | 2023-04-28 | 2021-02-08 | 4.4 | 5.07 | 4.36 | 3.9 | 0.010 | 1.37 | 0.0 | 0.06 | 13.12 | 0.01 | 1.977 | 6.38 | 0.12 | 7.3 | 92.7 | 0.0 | -2.19 | 0.89 | 0.78 | — | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 12.78 | 0.00 | 1.773 | 12.19 | 0.00 | 4.7 | 95.3 | 0.0 | -0.92 | 0.97 | 0.88 | 0.79 | — | 74624 | 4656 | 13 | 0 | 31 | 0 | 37485 | logfile |
✔ | 7TT5 | 26111 | 2023-04-23 | 2022-01-31 | 4.3 | 4.48 | — | 4.4 | 0.004 | 0.69 | 0.0 | 0.04 | 10.02 | 0.01 | 2.033 | 4.14 | 0.00 | 0.9 | 99.1 | 0.0 | 1.26 | 0.65 | 0.70 | — | 4.3 | 0.004 | 0.59 | 0.0 | 0.04 | 12.22 | 0.00 | 1.862 | 9.68 | 0.00 | 3.4 | 96.6 | 0.0 | 0.38 | 1.20 | 0.69 | 0.77 | — | 14255 | 928 | 5 | 0 | 0 | 0 | 6938 | logfile |
✔ | 8B0i | 15784 | 2023-04-24 | 2022-09-07 | 4.28 | 5.23 | 4.35 | 4.5 | 0.012 | 1.98 | 1.0 | 0.11 | 22.56 | 0.01 | 1.911 | 8.92 | 0.14 | 5.1 | 94.9 | 0.0 | -1.62 | 0.77 | 0.61 | — | 4.5 | 0.002 | 0.59 | 0.0 | 0.04 | 20.65 | 0.00 | 1.974 | 14.00 | 0.00 | 5.1 | 94.9 | 0.0 | 0.38 | 1.42 | 0.80 | 0.74 | — | 17636 | 1075 | 5 | 103 | 0 | 0 | 7831 | logfile |
✔ | 6GCS | 4384 | 2023-04-20 | 2018-04-19 | 4.32 | 4.51 | — | 4.3 | 0.010 | 1.35 | 3.0 | 0.97 | 12.02 | 0.01 | 2.231 | 8.79 | 0.73 | 13.4 | 85.9 | 0.8 | -4.79 | 0.77 | 0.78 | — | 4.3 | 0.009 | 1.69 | 0.0 | 0.30 | 12.66 | 0.00 | 2.049 | 20.03 | 0.00 | 13.2 | 86.5 | 0.3 | -2.20 | 0.78 | 0.78 | 0.79 | — | 55137 | 6864 | 53 | 0 | 667 | 0 | 0 | logfile |
✔ | 7S38 | 24819 | 2023-04-23 | 2021-09-04 | 3.3 | 3.17 | 3.25 | 3.1 | 0.008 | 0.99 | 0.0 | 0.05 | 15.52 | 0.01 | 2.233 | 2.62 | 0.08 | 4.2 | 95.8 | 0.0 | -1.38 | 0.86 | 0.83 | 3.03 | 3.1 | 0.002 | 0.52 | 0.0 | 0.03 | 17.38 | 0.00 | 2.095 | 8.30 | 0.00 | 2.5 | 97.5 | 0.0 | 0.46 | 1.31 | 0.88 | 0.87 | 2.70 | 13987 | 1353 | 4 | 138 | 1 | 0 | 0 | logfile |
✔ | 7CXR | 30495 | 2023-04-20 | 2020-09-02 | 3.4 | 3.32 | 3.43 | 3.7 | 0.007 | 0.87 | 1.0 | 0.06 | 16.56 | 0.00 | 2.199 | 12.99 | 3.39 | 6.6 | 93.1 | 0.3 | -2.27 | 0.52 | 0.54 | 1.33 | 3.6 | 0.003 | 0.75 | 0.0 | 0.04 | 18.18 | 0.00 | 2.283 | 11.73 | 0.00 | 4.1 | 95.9 | 0.0 | 1.92 | 1.57 | 0.59 | 0.62 | 1.16 | 5168 | 614 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JJJ | 22354 | 2023-04-20 | 2020-07-26 | 4.5 | 4.63 | 4.47 | 4.5 | 0.020 | 1.79 | 0.0 | 0.13 | 10.01 | 0.01 | 2.377 | 0.90 | 0.07 | 2.0 | 98.0 | 0.0 | 0.68 | 0.79 | 0.80 | — | 4.5 | 0.004 | 0.71 | 0.0 | 0.05 | 12.38 | 0.00 | 2.113 | 11.30 | 0.00 | 4.0 | 96.0 | 0.0 | -0.22 | 1.44 | 0.80 | 0.83 | — | 54614 | 6674 | 92 | 0 | 182 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2023-04-20 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.88 | 0.0 | 0.04 | 22.84 | 0.01 | 1.820 | 82.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.78 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 7M9C | 23723 | 2023-04-29 | 2021-03-30 | 4.2 | 4.61 | 3.85 | 4.2 | 0.003 | 0.64 | 4.0 | 0.04 | 14.80 | 0.00 | 1.350 | 9.42 | 0.10 | 2.6 | 97.3 | 0.1 | 0.09 | 0.78 | 0.67 | — | 4.3 | 0.003 | 0.76 | 0.0 | 0.05 | 15.38 | 0.00 | 2.130 | 15.90 | 0.00 | 2.7 | 97.2 | 0.1 | 0.81 | 6.10 | 0.83 | 0.83 | — | 30517 | 3598 | 26 | 66 | 10 | 0 | 0 | logfile |
✔ | 6M6B | 30118 | 2023-04-28 | 2020-03-14 | 4.1 | 4.19 | — | 4.1 | 0.007 | 0.95 | 0.0 | 0.06 | 16.85 | 0.01 | 2.133 | 12.35 | 0.38 | 5.5 | 94.5 | 0.0 | -3.41 | 0.79 | 0.76 | — | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 15.92 | 0.00 | 1.984 | 12.90 | 0.00 | 4.3 | 95.7 | 0.0 | -0.66 | 1.51 | 0.85 | 0.82 | — | 28180 | 3417 | 10 | 56 | 4 | 0 | 0 | logfile |