Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NVW	12615	2023-04-26	2021-03-16	4.3	4.32	4.26	4.2	0.002	0.45	0.0	0.04	15.45	0.00	1.971	6.64	0.00	4.4	95.6	0.0	0.80	0.71	0.66	—	4.2	0.003	0.70	0.0	0.04	15.77	0.00	2.146	15.97	0.00	4.7	95.2	0.0	-0.42	1.05	0.73	0.68	—	23647	2814	17	42	35	0	0	logfile
✔	6LN9	0928	2023-04-20	2019-12-28	3.4	3.61	3.06	3.6	0.003	0.54	0.0	0.04	12.32	0.00	2.075	7.70	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.003	0.60	0.0	0.04	14.72	0.00	1.333	10.18	0.00	4.3	95.7	0.0	-0.24	0.52	0.62	0.75	1.21	7612	987	1	0	2	0	0	logfile
✔	7K8Y	22735	2023-04-28	2020-09-27	4.4	5.34	—	4.4	0.003	0.55	0.0	0.05	10.63	0.00	1.137	21.70	0.04	2.8	97.0	0.3	-2.11	0.80	0.77	—	4.4	0.002	0.60	0.0	0.04	11.27	0.00	2.109	12.37	0.00	3.6	96.2	0.1	-0.32	1.11	0.81	0.81	—	25560	3242	8	0	23	0	0	logfile
✔	7VVo	32146	2023-04-20	2021-11-06	4.1	2.82	3.93	4.0	0.014	1.88	0.0	0.09	15.54	0.01	2.158	9.28	3.81	4.5	95.5	0.1	-1.84	0.70	0.74	—	3.9	0.003	0.66	0.0	0.04	13.97	0.00	2.115	12.08	0.00	3.2	96.8	0.0	0.24	2.35	0.69	0.69	—	7942	1059	6	0	0	0	0	logfile
✔	7KCQ	22817	2023-04-21	2020-10-07	3.2	3.31	—	3.3	0.011	0.80	0.0	0.06	15.99	0.00	1.987	7.49	7.09	6.1	93.9	0.0	-4.00	0.77	0.87	4.16	3.3	0.003	0.52	0.0	0.04	15.79	0.00	2.137	8.90	0.00	2.6	97.4	0.0	-0.22	1.13	0.75	0.87	3.47	10332	1388	8	0	8	0	0	logfile
✔	7PHG	13415	2023-04-20	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.004	0.66	0.0	0.04	13.37	0.00	1.921	20.25	0.00	11.6	88.4	0.0	-3.54	1.28	0.78	0.67	—	6469	427	3	0	0	0	3160	logfile
✔	6FU8	4319	2023-04-19	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	7QGU	13959	2023-04-28	2021-12-10	4.75	7.20	—	5.6	0.010	1.50	1.0	0.04	15.78	0.02	1.064	11.45	0.26	6.6	91.0	2.3	-1.82	0.70	0.57	—	5.5	0.009	1.09	0.0	0.05	20.48	0.01	1.102	77.49	0.00	10.9	88.3	0.8	-1.78	2.90	0.82	0.84	—	135606	5791	54	4656	0	0	0	logfile
✔	7TPK	26058	2023-04-19	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.69	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.004	0.63	0.0	0.04	15.27	0.00	2.331	4.95	0.00	4.2	95.8	0.0	-1.45	1.26	0.65	0.81	3.26	1484	194	1	0	1	0	0	logfile
✔	8D8Q	27254	2023-04-20	2022-06-08	4.2	3.68	34.06	3.7	0.012	1.23	0.0	0.05	11.07	0.01	2.139	1.66	0.53	1.5	98.3	0.2	2.20	0.67	0.74	—	3.6	0.005	0.74	0.0	0.05	13.10	0.00	2.150	16.15	0.00	4.9	95.1	0.0	-0.72	1.04	0.67	0.76	—	5202	669	6	0	1	0	0	logfile
✔	7NG4	12307	2023-04-28	2021-02-08	4.4	5.07	4.36	3.9	0.010	1.37	0.0	0.06	13.12	0.01	1.977	6.38	0.12	7.3	92.7	0.0	-2.19	0.89	0.78	—	3.9	0.003	0.57	0.0	0.04	12.78	0.00	1.773	12.19	0.00	4.7	95.3	0.0	-0.92	0.97	0.88	0.79	—	74624	4656	13	0	31	0	37485	logfile
✔	7TT5	26111	2023-04-23	2022-01-31	4.3	4.48	—	4.4	0.004	0.69	0.0	0.04	10.02	0.01	2.033	4.14	0.00	0.9	99.1	0.0	1.26	0.65	0.70	—	4.3	0.004	0.59	0.0	0.04	12.22	0.00	1.862	9.68	0.00	3.4	96.6	0.0	0.38	1.20	0.69	0.77	—	14255	928	5	0	0	0	6938	logfile
✔	8B0i	15784	2023-04-24	2022-09-07	4.28	5.23	4.35	4.5	0.012	1.98	1.0	0.11	22.56	0.01	1.911	8.92	0.14	5.1	94.9	0.0	-1.62	0.77	0.61	—	4.5	0.002	0.59	0.0	0.04	20.65	0.00	1.974	14.00	0.00	5.1	94.9	0.0	0.38	1.42	0.80	0.74	—	17636	1075	5	103	0	0	7831	logfile
✔	6GCS	4384	2023-04-20	2018-04-19	4.32	4.51	—	4.3	0.010	1.35	3.0	0.97	12.02	0.01	2.231	8.79	0.73	13.4	85.9	0.8	-4.79	0.77	0.78	—	4.3	0.009	1.69	0.0	0.30	12.66	0.00	2.049	20.03	0.00	13.2	86.5	0.3	-2.20	0.78	0.78	0.79	—	55137	6864	53	0	667	0	0	logfile
✔	7S38	24819	2023-04-23	2021-09-04	3.3	3.17	3.25	3.1	0.008	0.99	0.0	0.05	15.52	0.01	2.233	2.62	0.08	4.2	95.8	0.0	-1.38	0.86	0.83	3.03	3.1	0.002	0.52	0.0	0.03	17.38	0.00	2.095	8.30	0.00	2.5	97.5	0.0	0.46	1.31	0.88	0.87	2.70	13987	1353	4	138	1	0	0	logfile
✔	7CXR	30495	2023-04-20	2020-09-02	3.4	3.32	3.43	3.7	0.007	0.87	1.0	0.06	16.56	0.00	2.199	12.99	3.39	6.6	93.1	0.3	-2.27	0.52	0.54	1.33	3.6	0.003	0.75	0.0	0.04	18.18	0.00	2.283	11.73	0.00	4.1	95.9	0.0	1.92	1.57	0.59	0.62	1.16	5168	614	2	0	0	0	0	logfile
✔	7JJJ	22354	2023-04-20	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.79	0.0	0.13	10.01	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.71	0.0	0.05	12.38	0.00	2.113	11.30	0.00	4.0	96.0	0.0	-0.22	1.44	0.80	0.83	—	54614	6674	92	0	182	0	0	logfile
✔	7SAM	24952	2023-04-20	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7M9C	23723	2023-04-29	2021-03-30	4.2	4.61	3.85	4.2	0.003	0.64	4.0	0.04	14.80	0.00	1.350	9.42	0.10	2.6	97.3	0.1	0.09	0.78	0.67	—	4.3	0.003	0.76	0.0	0.05	15.38	0.00	2.130	15.90	0.00	2.7	97.2	0.1	0.81	6.10	0.83	0.83	—	30517	3598	26	66	10	0	0	logfile
✔	6M6B	30118	2023-04-28	2020-03-14	4.1	4.19	—	4.1	0.007	0.95	0.0	0.06	16.85	0.01	2.133	12.35	0.38	5.5	94.5	0.0	-3.41	0.79	0.76	—	4.1	0.003	0.63	0.0	0.04	15.92	0.00	1.984	12.90	0.00	4.3	95.7	0.0	-0.66	1.51	0.85	0.82	—	28180	3417	10	56	4	0	0	logfile

• ← previous
• Page 4 of 372
• next →