Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7E3B	30978	2022-12-11	2021-02-08	4.2	4.05	—	4.0	0.006	0.81	0.0	0.05	13.26	0.00	2.241	16.63	0.00	8.2	91.8	0.0	-2.04	0.74	0.84	—	4.0	0.004	0.70	0.0	0.05	13.25	0.00	2.242	14.15	0.00	7.0	93.0	0.0	-1.24	0.40	0.74	0.83	—	3299	421	4	0	1	0	0	logfile
✔	7MR2	23954	2022-12-13	2021-05-07	4.3	4.72	—	4.5	0.003	0.75	0.0	0.05	14.96	0.01	2.257	5.86	0.00	5.1	94.9	0.0	-1.32	0.90	0.84	—	4.5	0.002	0.55	0.0	0.04	14.98	0.00	2.153	10.06	0.00	4.6	95.4	0.0	0.28	0.29	0.90	0.84	—	16671	2075	3	0	0	0	0	logfile
✔	7EoQ	31227	2022-12-15	2021-04-22	4.1	4.43	—	4.1	0.002	0.46	0.0	0.04	9.71	0.00	2.195	7.83	2.14	4.7	95.3	0.0	0.09	0.86	0.74	—	4.1	0.004	0.66	0.0	0.04	11.25	0.00	2.124	17.22	0.00	7.9	92.1	0.0	-0.78	1.25	0.89	0.80	—	24742	3144	8	0	10	0	0	logfile
✔	7P16	13157	2022-12-11	2021-07-01	4.3	4.40	3.53	4.3	0.004	0.73	0.0	0.04	15.07	0.00	2.178	7.56	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.003	0.71	0.0	0.04	14.24	0.00	2.164	11.96	0.00	3.4	96.6	0.0	0.67	1.45	0.64	0.77	—	3621	444	3	0	1	0	0	logfile
✔	7EA8	31040	2022-12-13	2021-03-06	3.1	3.23	—	3.2	0.004	0.71	0.0	0.04	24.03	0.01	2.306	1.94	0.00	3.7	96.3	0.0	-3.23	0.69	0.78	2.67	3.2	0.005	0.60	0.0	0.04	25.92	0.00	2.189	5.15	0.00	5.1	94.9	0.0	-0.12	0.62	0.74	0.86	2.08	12865	984	12	244	4	0	0	logfile
✔	7E3C	30979	2022-12-11	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.81	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.003	0.74	0.0	0.05	14.07	0.00	2.129	15.48	0.00	11.6	88.4	0.0	-2.98	1.56	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✔	7MoP	23925	2022-12-20	2021-05-03	3.3	3.06	3.23	3.2	0.006	0.80	0.0	0.05	14.72	0.01	2.120	6.16	1.33	2.8	97.2	0.0	-0.65	0.72	0.77	2.37	3.2	0.003	0.56	0.0	0.03	15.87	0.00	2.023	5.57	0.00	2.5	97.5	0.0	2.39	1.84	0.75	0.82	1.78	39049	2452	2	0	0	0	19681	logfile
✔	7AFK	11768	2022-12-14	2020-09-19	4.9	5.45	4.73	3.0	0.008	0.88	1.0	0.05	18.40	0.02	1.519	42.50	0.00	8.4	91.6	0.0	-2.88	0.87	0.80	—	2.9	0.006	0.83	0.0	0.04	18.01	0.01	1.817	46.34	0.00	7.5	92.5	0.0	-1.52	0.78	0.88	0.85	—	18521	1108	11	456	13	0	0	logfile
✔	7EZ0	31385	2022-12-12	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	14.43	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.006	0.69	0.0	0.04	15.71	0.00	1.877	8.66	0.00	0.0	0.0	0.0	—	1.91	0.77	0.86	—	8306	0	1	387	27	0	0	logfile
✔	7AFL	11769	2022-12-18	2020-09-19	4.2	5.13	4.56	3.0	0.010	1.08	6.0	0.06	17.44	0.01	1.852	43.80	0.00	6.0	94.0	0.0	-1.84	0.89	0.87	—	2.8	0.006	0.75	0.0	0.04	16.54	0.01	1.824	42.74	0.00	6.4	93.6	0.0	-1.43	0.72	0.89	0.88	—	34322	1487	15	1054	25	0	0	logfile
✔	7NT6	12584	2022-12-15	2021-03-09	4.3	4.34	3.99	3.3	0.012	2.07	0.0	0.15	8.75	0.01	2.119	1.13	0.00	4.0	95.6	0.3	-2.44	0.72	0.76	—	3.2	0.003	0.66	0.0	0.05	8.24	0.00	2.143	3.83	0.00	6.3	93.7	0.0	2.06	0.62	0.71	0.72	—	24128	5582	17	90	0	0	0	logfile
✔	7L8W	23238	2022-12-13	2021-01-01	4.1	4.21	3.98	4.1	0.020	1.68	0.0	0.13	9.89	0.02	2.347	1.38	0.00	1.7	98.3	0.0	1.14	0.72	0.82	—	4.1	0.003	0.69	0.0	0.05	13.28	0.00	2.155	10.53	0.00	2.4	97.4	0.2	-0.06	1.39	0.73	0.82	—	15803	1714	22	0	298	0	0	logfile
✔	6XLD	22240	2022-12-12	2020-06-28	3.66	3.78	—	3.7	0.003	0.51	0.0	0.04	9.94	0.00	2.061	5.73	0.58	1.5	98.5	0.0	-3.76	0.77	0.75	1.85	3.7	0.002	0.61	0.0	0.04	14.50	0.00	1.951	10.18	0.00	3.1	96.9	0.0	-0.23	1.41	0.80	0.81	2.33	10992	1349	5	0	4	0	0	logfile
✔	7BZY	30263	2022-12-11	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.80	0.0	0.05	5.52	0.00	2.116	12.77	0.00	14.4	85.6	0.0	-2.69	1.26	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	7LGM	23327	2022-12-12	2021-01-20	4.4	4.58	4.39	4.5	0.018	1.88	0.0	0.10	9.93	0.01	2.398	2.86	0.00	7.0	93.0	0.0	-1.52	0.65	0.53	—	4.5	0.003	0.82	0.0	0.05	12.30	0.00	2.205	15.26	0.00	11.0	88.9	0.1	-2.19	3.76	0.73	0.69	—	10954	1438	4	0	2	0	0	logfile
✔	7EoU	31231	2022-12-15	2021-04-22	4.3	4.50	—	4.2	0.002	0.43	0.0	0.04	8.92	0.00	2.243	9.25	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.003	0.62	0.0	0.04	11.30	0.00	2.066	15.92	0.00	6.3	93.7	0.1	-0.32	1.65	0.89	0.80	—	24593	3084	8	0	19	0	0	logfile
✔	7L8Y	23240	2022-12-13	2021-01-01	4.2	4.30	4.00	4.2	0.020	1.64	1.0	0.13	10.06	0.02	2.188	2.25	0.00	2.4	97.6	0.0	1.02	0.71	0.81	—	4.2	0.004	0.66	0.0	0.05	13.11	0.00	2.145	9.29	0.00	3.0	97.0	0.0	0.13	0.89	0.72	0.83	—	15903	1739	27	0	292	0	0	logfile
✔	7oZV	13138	2022-12-12	2021-06-28	3.2	3.08	3.16	3.3	0.007	0.58	0.0	0.04	13.29	0.01	2.202	8.59	0.00	2.6	97.4	0.0	-0.22	0.64	0.79	3.09	3.3	0.003	0.48	0.0	0.04	15.36	0.00	2.139	8.29	0.00	2.3	97.7	0.0	-0.10	1.89	0.72	0.83	2.74	8409	991	6	22	2	0	0	logfile
✔	7Fii	31598	2022-12-12	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.57	0.0	0.04	9.50	0.00	2.272	5.61	0.00	3.6	96.4	0.0	1.07	0.67	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile
✔	7FG2	31574	2022-12-12	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.69	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.003	0.76	0.0	0.05	14.69	0.00	2.117	18.81	0.00	12.6	87.1	0.3	-2.65	0.72	0.37	0.63	—	9342	1202	2	0	0	0	0	logfile

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