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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7MR1 | 23953 | 2023-11-17 | 2021-05-07 | 4.2 | 4.74 | — | 4.6 | 0.003 | 0.78 | 0.0 | 0.05 | 14.91 | 0.01 | 2.237 | 5.74 | 0.00 | 5.5 | 94.5 | 0.0 | -1.78 | 0.85 | 0.84 | — | 4.6 | 0.004 | 0.68 | 0.0 | 0.04 | 14.81 | 0.00 | 2.159 | 12.63 | 0.00 | 7.5 | 92.4 | 0.0 | -0.59 | 0.33 | 0.85 | 0.84 | — | 18473 | 2316 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PWX | 20514 | 2023-11-19 | 2019-07-23 | 4.2 | 4.53 | — | 4.2 | 0.003 | 0.59 | 0.0 | 0.04 | 27.24 | 0.00 | 2.098 | 13.58 | 3.58 | 4.5 | 95.5 | 0.0 | -1.76 | 0.89 | 0.85 | — | 4.2 | 0.005 | 0.70 | 0.0 | 0.04 | 26.62 | 0.01 | 2.073 | 20.17 | 0.00 | 4.8 | 95.2 | 0.0 | 0.15 | 1.23 | 0.90 | 0.86 | — | 14411 | 1074 | 11 | 292 | 0 | 0 | 0 | logfile |
✔ | 6F2D | 4173 | 2023-11-15 | 2017-11-24 | 4.2 | 4.27 | 4.05 | 4.1 | 0.010 | 1.19 | 0.0 | 0.05 | 9.30 | 0.01 | 2.023 | 26.29 | 0.51 | 16.3 | 83.0 | 0.7 | -6.32 | 0.71 | 0.72 | — | 4.1 | 0.003 | 0.89 | 0.0 | 0.04 | 13.03 | 0.01 | 2.125 | 12.83 | 0.00 | 7.7 | 91.7 | 0.6 | 0.23 | 2.03 | 0.75 | 0.77 | — | 12541 | 1629 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZFo | 11184 | 2023-11-17 | 2020-06-17 | 4.4 | 4.43 | — | 4.4 | 0.003 | 0.56 | 0.0 | 0.04 | 10.41 | 0.00 | 2.157 | 3.58 | 1.30 | 4.5 | 95.5 | 0.0 | -0.66 | 0.49 | 0.51 | — | 4.4 | 0.003 | 0.60 | 0.0 | 0.04 | 11.46 | 0.00 | 1.946 | 11.31 | 0.00 | 5.3 | 94.7 | 0.0 | -1.00 | 1.56 | 0.53 | 0.59 | — | 18988 | 1252 | 8 | 0 | 2 | 0 | 9310 | logfile |
✔ | 6Fo0 | 4286 | 2023-11-15 | 2018-02-05 | 4.1 | 4.16 | 2.43 | 4.1 | 0.012 | 0.96 | 0.0 | 0.05 | 8.97 | 0.01 | 2.040 | 5.54 | 0.00 | 10.2 | 89.8 | 0.1 | -4.55 | 0.72 | 0.79 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 12.56 | 0.00 | 1.904 | 10.30 | 0.00 | 5.8 | 94.2 | 0.0 | -1.21 | 2.42 | 0.74 | 0.81 | — | 61356 | 3910 | 24 | 0 | 8 | 0 | 30362 | logfile |
✔ | 6DZM | 8936 | 2023-11-15 | 2018-07-05 | 4.29 | 4.66 | — | 4.3 | 0.008 | 0.96 | 0.0 | 0.05 | 9.60 | 0.01 | 2.058 | 8.59 | 0.00 | 13.6 | 86.4 | 0.0 | -4.76 | 0.77 | 0.80 | — | 4.3 | 0.003 | 0.76 | 0.0 | 0.05 | 12.09 | 0.00 | 2.177 | 14.52 | 0.00 | 8.9 | 91.1 | 0.0 | -1.87 | 0.98 | 0.78 | 0.83 | — | 13584 | 1695 | 24 | 0 | 27 | 0 | 0 | logfile |
✔ | 7A96 | 11686 | 2023-11-20 | 2020-09-01 | 4.8 | 5.70 | 4.94 | 4.9 | 0.003 | 0.49 | 1.0 | 0.04 | 5.85 | 0.00 | 2.236 | 3.91 | 0.82 | 10.8 | 89.2 | 0.0 | -4.46 | 0.88 | 0.77 | — | 4.9 | 0.002 | 0.63 | 0.0 | 0.04 | 9.04 | 0.00 | 2.114 | 10.16 | 0.00 | 3.3 | 96.6 | 0.0 | -0.85 | 0.87 | 0.89 | 0.82 | — | 29811 | 3783 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KPW | 22990 | 2023-11-13 | 2020-11-12 | 4.9 | 5.04 | 4.74 | 4.9 | 0.009 | 1.54 | 4.0 | 0.10 | 1.89 | 0.01 | 2.279 | 3.61 | 0.00 | 3.9 | 94.9 | 1.2 | 4.09 | 0.75 | 0.67 | — | 4.9 | 0.003 | 0.73 | 0.0 | 0.04 | 5.85 | 0.00 | 2.148 | 2.79 | 0.00 | 11.5 | 87.9 | 0.6 | -0.50 | 2.04 | 0.82 | 0.82 | — | 4313 | 865 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PVQ | 20497 | 2023-11-17 | 2019-07-21 | 4.75 | 4.68 | — | 4.6 | 0.008 | 1.32 | 0.0 | 0.06 | 13.01 | 0.01 | 2.244 | 9.74 | 1.15 | 14.4 | 85.2 | 0.4 | -5.23 | 0.66 | 0.75 | — | 4.5 | 0.003 | 0.81 | 0.0 | 0.04 | 13.47 | 0.00 | 2.171 | 14.10 | 0.00 | 11.8 | 88.0 | 0.2 | -2.25 | 1.10 | 0.67 | 0.77 | — | 17640 | 2160 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WTH | 32786 | 2023-11-13 | 2022-02-04 | 4.3 | 3.63 | — | 4.0 | 0.004 | 0.78 | 0.0 | 0.05 | 12.97 | 0.01 | 2.169 | 9.08 | 0.85 | 8.0 | 92.0 | 0.0 | -2.03 | 0.69 | 0.70 | — | 3.8 | 0.004 | 0.77 | 0.0 | 0.05 | 13.51 | 0.00 | 2.154 | 11.58 | 0.00 | 10.6 | 89.2 | 0.2 | -2.44 | 1.20 | 0.69 | 0.72 | — | 3257 | 421 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B3o | 7040 | 2023-11-14 | 2017-09-22 | 4.1 | 4.04 | — | 4.1 | 0.024 | 1.82 | 0.0 | 0.11 | 10.99 | 0.01 | 2.285 | 2.28 | 0.34 | 2.1 | 97.6 | 0.3 | 1.14 | 0.69 | 0.76 | — | 4.0 | 0.005 | 0.75 | 0.0 | 0.04 | 14.24 | 0.00 | 2.119 | 10.89 | 0.00 | 4.7 | 95.0 | 0.3 | 0.76 | 1.67 | 0.71 | 0.77 | — | 7980 | 1032 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NAV | 0397 | 2023-11-17 | 2018-12-06 | 4.1 | 4.14 | — | 4.1 | 0.005 | 0.82 | 0.0 | 0.06 | 8.77 | 0.00 | 2.245 | 4.10 | 0.00 | 4.7 | 95.3 | 0.0 | -2.96 | 0.62 | 0.82 | — | 4.1 | 0.004 | 0.63 | 0.0 | 0.04 | 11.69 | 0.00 | 2.121 | 8.30 | 0.00 | 6.8 | 93.2 | 0.0 | -0.83 | 1.53 | 0.63 | 0.84 | — | 18711 | 2751 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B0S | 11970 | 2023-11-18 | 2020-11-21 | 3.6 | 3.73 | — | 3.6 | 0.009 | 0.77 | 0.0 | 0.04 | 16.13 | 0.00 | 2.214 | 7.36 | 0.35 | 6.2 | 93.8 | 0.0 | -0.53 | 0.83 | 0.86 | 2.66 | 3.6 | 0.003 | 0.56 | 0.0 | 0.04 | 16.88 | 0.00 | 2.232 | 4.20 | 0.00 | 2.5 | 97.5 | 0.0 | 1.22 | 0.34 | 0.82 | 0.85 | 1.84 | 21076 | 2572 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 5JUY | 8178 | 2023-11-19 | 2016-05-10 | 4.1 | 4.28 | — | 4.1 | 0.009 | 1.23 | 0.0 | 0.05 | 10.72 | 0.00 | 1.447 | 16.11 | 0.71 | 6.6 | 93.0 | 0.4 | -3.18 | 0.76 | 0.55 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 12.04 | 0.00 | 2.092 | 12.45 | 0.00 | 5.3 | 94.6 | 0.1 | -0.61 | 1.62 | 0.84 | 0.69 | — | 76058 | 9461 | 32 | 0 | 14 | 0 | 0 | logfile |
✔ | 7ZH6 | 14725 | 2023-11-13 | 2022-04-05 | 3.67 | 4.10 | 0.95 | 4.2 | 0.006 | 0.90 | 0.0 | 0.06 | 16.13 | 0.01 | 1.607 | 26.36 | 1.26 | 6.4 | 93.6 | 0.0 | 0.99 | 0.54 | 0.73 | 1.36 | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 16.88 | 0.00 | 2.217 | 14.09 | 0.00 | 6.0 | 94.0 | 0.0 | 0.95 | 1.12 | 0.54 | 0.74 | 1.24 | 3771 | 478 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6LQi | 0946 | 2023-11-19 | 2020-01-13 | 4.5 | 4.59 | — | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.59 | 0.01 | 2.203 | 10.88 | 0.40 | 6.4 | 93.4 | 0.2 | -3.01 | 0.70 | 0.75 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.04 | 13.02 | 0.00 | 2.196 | 10.64 | 0.00 | 7.5 | 92.4 | 0.1 | -0.76 | 1.53 | 0.70 | 0.75 | — | 26934 | 3903 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PVL | 20492 | 2023-11-18 | 2019-07-21 | 4.4 | 4.48 | — | 4.4 | 0.008 | 1.13 | 0.0 | 0.06 | 11.67 | 0.01 | 2.202 | 6.80 | 1.39 | 15.4 | 84.2 | 0.5 | -5.53 | 0.69 | 0.81 | — | 4.4 | 0.004 | 0.85 | 0.0 | 0.04 | 13.22 | 0.00 | 2.071 | 16.18 | 0.00 | 12.8 | 87.0 | 0.2 | -1.56 | 1.50 | 0.70 | 0.82 | — | 21006 | 2576 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 6HQE | 0252 | 2023-11-14 | 2018-09-24 | 4.4 | 4.34 | — | 4.4 | 0.009 | 1.25 | 0.0 | 0.06 | 9.67 | 0.01 | 2.307 | 6.79 | 0.00 | 4.8 | 95.2 | 0.0 | -7.05 | 0.65 | 0.85 | — | 4.4 | 0.004 | 0.77 | 0.0 | 0.04 | 11.97 | 0.01 | 2.226 | 19.13 | 0.00 | 2.7 | 97.3 | 0.0 | 1.18 | 1.68 | 0.64 | 0.83 | — | 9360 | 1196 | 52 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S1M | 10080 | 2023-11-17 | 2019-06-19 | 4.27 | 4.52 | — | 4.3 | 0.010 | 1.22 | 2.0 | 0.08 | 17.76 | 0.01 | 1.193 | 13.31 | 1.46 | 7.2 | 91.9 | 0.8 | -3.67 | 0.74 | 0.59 | — | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 16.15 | 0.00 | 2.145 | 12.90 | 0.00 | 4.8 | 95.2 | 0.0 | -0.58 | 3.63 | 0.82 | 0.76 | — | 19726 | 2399 | 11 | 50 | 3 | 0 | 0 | logfile |
✔ | 7F5U | 31467 | 2023-11-17 | 2021-06-22 | 4.1 | 4.16 | — | 3.9 | 0.007 | 0.80 | 0.0 | 0.04 | 14.71 | 0.00 | 2.101 | 24.28 | 0.00 | 12.3 | 87.6 | 0.1 | -4.58 | 0.82 | 0.84 | — | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 14.04 | 0.00 | 2.136 | 14.13 | 0.00 | 7.4 | 92.5 | 0.1 | -0.91 | 0.70 | 0.82 | 0.82 | — | 20744 | 2740 | 4 | 0 | 0 | 0 | 0 | logfile |