Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6M6B	30118	2021-11-04	2020-03-14	4.1	4.19	—	4.1	0.007	0.95	0.0	0.06	16.85	0.01	2.133	12.35	0.38	5.5	94.5	0.0	-3.41	0.79	0.76	—	4.1	0.004	0.65	0.0	0.04	15.86	0.00	2.028	13.06	0.00	4.2	95.8	0.0	-0.51	1.54	0.85	0.82	—	28180	3417	10	56	4	0	0	logfile
✔	7NCA	12264	2021-11-02	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.50	0.0	0.05	13.14	0.00	2.541	0.48	0.00	4.9	95.1	0.0	-2.81	0.78	0.70	0.85	3.29	10428	732	12	0	0	0	5376	logfile
✔	6W4o	21535	2021-11-04	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.77	1.0	0.05	10.85	0.00	0.834	15.75	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.003	0.75	0.0	0.05	12.68	0.00	2.094	20.98	0.00	2.5	97.4	0.1	0.69	1.48	0.89	0.83	—	14475	1789	13	0	0	0	0	logfile
✔	6ZiT	11229	2021-11-03	2020-06-26	3.49	3.68	4.20	3.5	0.005	0.74	0.0	0.04	15.18	0.01	1.968	23.55	0.00	10.6	89.4	0.0	-1.92	0.49	0.72	0.69	3.5	0.013	1.07	1.0	0.04	16.76	0.01	1.956	14.89	0.00	5.4	94.6	0.0	0.29	0.59	0.49	0.73	0.42	20646	1300	15	0	0	0	10446	logfile
✔	6RRS	4989	2021-11-05	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.7	0.003	0.75	0.0	0.00	6.45	0.00	2.234	1.95	0.00	11.4	88.6	0.0	-0.99	1.80	0.81	0.66	—	93060	23220	180	0	0	0	0	logfile
✔	7K45	22660	2021-11-01	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.41	0.0	0.08	9.47	0.01	2.568	0.18	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.020	1.59	1.0	0.06	14.94	0.01	2.340	10.08	0.00	4.6	95.4	0.0	0.26	2.25	0.81	0.81	2.57	3038	419	4	0	2	0	0	logfile
✔	7JMG	22393	2021-11-03	2020-07-31	4.5	7.15	—	4.3	0.005	0.93	0.0	0.05	9.82	0.01	1.373	7.34	0.27	10.3	89.6	0.1	-4.77	0.57	0.34	—	4.8	0.003	0.70	0.0	0.04	11.02	0.00	2.144	11.26	0.00	8.2	91.7	0.0	-1.61	0.86	0.83	0.70	—	120756	13500	12	0	3608	0	0	logfile
✔	7DXK	30912	2021-11-03	2021-01-19	4.1	4.08	—	4.0	0.007	1.05	0.0	0.05	15.55	0.01	2.251	5.89	0.48	5.2	94.6	0.2	-3.75	0.79	0.81	—	4.0	0.006	0.89	0.0	0.04	14.60	0.00	1.534	16.23	0.00	5.4	94.5	0.0	0.78	3.11	0.79	0.79	—	20491	2621	2	0	0	0	0	logfile
✔	6M49	30074	2021-11-01	2020-03-06	3.7	4.45	—	4.4	0.022	0.95	0.0	0.28	14.82	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.89	0.0	0.11	16.85	0.00	2.063	14.49	0.00	2.9	97.1	0.0	1.92	3.61	0.48	0.73	1.01	3098	420	3	0	1	0	0	logfile
✔	7JJJ	22354	2021-11-01	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.77	0.0	0.13	9.94	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.003	0.66	0.0	0.05	12.11	0.00	2.158	11.50	0.00	4.4	95.6	0.0	0.04	1.48	0.79	0.83	—	54614	6674	92	0	182	0	0	logfile
✔	7AT8	11910	2021-11-02	2020-10-29	4.4	4.59	—	4.4	0.004	0.63	0.0	0.04	24.70	0.00	1.763	8.58	0.40	2.3	97.4	0.3	-1.00	0.84	0.77	—	4.4	0.004	0.64	0.0	0.04	26.22	0.00	2.180	14.69	0.00	4.8	95.1	0.1	0.42	1.09	0.86	0.82	—	15951	1186	13	312	20	0	0	logfile
✔	6ZGA	11199	2021-11-04	2020-06-18	4.6	5.12	4.44	4.9	0.011	1.52	0.0	0.08	14.66	0.01	2.071	13.20	0.07	10.1	89.7	0.2	-3.01	0.41	0.70	—	5.0	0.003	0.76	0.0	0.05	13.57	0.01	2.079	16.91	0.00	6.1	93.9	0.0	-1.17	1.54	0.34	0.67	—	26963	3413	14	0	8	0	0	logfile
✔	7A92	11682	2021-11-02	2020-09-01	4.2	4.58	4.29	4.2	0.007	0.83	0.0	0.06	14.45	0.01	2.222	3.86	1.19	5.2	94.7	0.1	-2.44	0.77	0.64	—	4.2	0.003	0.62	0.0	0.04	13.52	0.00	2.043	8.24	0.00	3.8	96.2	0.0	-0.22	0.89	0.89	0.84	—	10040	1231	5	0	10	0	0	logfile
✔	7BNo	12231	2021-11-03	2021-01-22	4.2	4.76	4.36	4.4	0.007	0.99	0.0	0.06	14.04	0.02	2.216	13.17	0.72	9.3	90.7	0.0	-3.77	0.88	0.80	—	4.4	0.003	0.64	0.0	0.04	14.03	0.00	2.160	10.36	0.00	4.7	95.2	0.0	-0.57	0.63	0.89	0.83	—	25480	3197	7	0	33	0	0	logfile
✔	7JL3	22371	2021-11-04	2020-07-29	4.2	5.32	—	5.0	0.003	0.77	2.0	0.05	15.45	0.00	1.999	11.68	1.45	2.9	97.1	0.0	0.40	0.87	0.78	—	5.0	0.003	0.62	0.0	0.04	14.51	0.00	1.753	13.35	0.00	3.6	96.4	0.0	1.29	0.80	0.89	0.82	—	21219	2457	11	84	12	0	0	logfile
✔	6ZPi	11340	2021-11-01	2020-07-08	4.5	4.63	—	4.4	0.014	1.17	3.0	0.07	15.30	0.01	1.667	13.95	0.00	4.6	95.4	0.0	-0.24	0.77	0.52	—	4.4	0.003	0.73	0.0	0.04	14.12	0.00	1.975	16.43	0.00	3.7	96.3	0.0	0.34	1.80	0.85	0.79	—	9412	1184	6	1	5	0	0	logfile
✔	7NCJ	12268	2021-11-02	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.3	0.003	0.61	1.0	0.05	13.83	0.00	1.948	17.62	0.00	11.1	88.9	0.0	-2.86	1.86	0.70	0.59	—	10860	774	12	0	0	0	5586	logfile
✔	6WU2	21903	2021-11-02	2020-05-04	3.36	3.76	3.55	3.7	0.010	0.72	0.0	0.05	14.78	0.00	2.074	6.87	0.76	7.8	92.0	0.2	-3.14	0.61	0.86	3.65	3.7	0.003	0.59	0.0	0.04	15.98	0.00	2.026	9.11	0.00	5.6	94.1	0.2	0.82	0.65	0.63	0.88	2.45	15404	978	4	0	10	0	7812	logfile
✔	7DA5	30623	2021-11-01	2020-10-14	3.3	3.66	—	3.8	0.008	1.21	10.0	0.09	16.47	0.01	1.673	16.04	10.06	9.1	90.6	0.3	-3.63	0.43	0.58	1.81	3.7	0.019	1.82	1.0	0.05	16.44	0.01	2.144	14.99	0.00	7.5	92.5	0.0	-0.69	1.54	0.51	0.74	1.98	4013	591	2	0	0	0	0	logfile
✔	7CQK	30442	2021-11-01	2020-08-11	3.3	3.38	—	3.3	0.010	1.35	3.0	0.08	19.24	0.01	0.963	29.86	21.66	11.3	87.7	1.0	-5.35	0.70	0.84	2.60	3.3	0.013	1.31	1.0	0.05	17.05	0.01	1.956	7.52	0.00	5.5	94.4	0.1	-1.35	2.02	0.72	0.86	2.50	8859	1116	7	0	2	0	0	logfile

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