Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MR1	23953	2023-11-17	2021-05-07	4.2	4.74	—	4.6	0.003	0.78	0.0	0.05	14.91	0.01	2.237	5.74	0.00	5.5	94.5	0.0	-1.78	0.85	0.84	—	4.6	0.004	0.68	0.0	0.04	14.81	0.00	2.159	12.63	0.00	7.5	92.4	0.0	-0.59	0.33	0.85	0.84	—	18473	2316	3	0	0	0	0	logfile
✔	6PWX	20514	2023-11-19	2019-07-23	4.2	4.53	—	4.2	0.003	0.59	0.0	0.04	27.24	0.00	2.098	13.58	3.58	4.5	95.5	0.0	-1.76	0.89	0.85	—	4.2	0.005	0.70	0.0	0.04	26.62	0.01	2.073	20.17	0.00	4.8	95.2	0.0	0.15	1.23	0.90	0.86	—	14411	1074	11	292	0	0	0	logfile
✔	6F2D	4173	2023-11-15	2017-11-24	4.2	4.27	4.05	4.1	0.010	1.19	0.0	0.05	9.30	0.01	2.023	26.29	0.51	16.3	83.0	0.7	-6.32	0.71	0.72	—	4.1	0.003	0.89	0.0	0.04	13.03	0.01	2.125	12.83	0.00	7.7	91.7	0.6	0.23	2.03	0.75	0.77	—	12541	1629	10	0	0	0	0	logfile
✔	6ZFo	11184	2023-11-17	2020-06-17	4.4	4.43	—	4.4	0.003	0.56	0.0	0.04	10.41	0.00	2.157	3.58	1.30	4.5	95.5	0.0	-0.66	0.49	0.51	—	4.4	0.003	0.60	0.0	0.04	11.46	0.00	1.946	11.31	0.00	5.3	94.7	0.0	-1.00	1.56	0.53	0.59	—	18988	1252	8	0	2	0	9310	logfile
✔	6Fo0	4286	2023-11-15	2018-02-05	4.1	4.16	2.43	4.1	0.012	0.96	0.0	0.05	8.97	0.01	2.040	5.54	0.00	10.2	89.8	0.1	-4.55	0.72	0.79	—	4.1	0.003	0.61	0.0	0.04	12.56	0.00	1.904	10.30	0.00	5.8	94.2	0.0	-1.21	2.42	0.74	0.81	—	61356	3910	24	0	8	0	30362	logfile
✔	6DZM	8936	2023-11-15	2018-07-05	4.29	4.66	—	4.3	0.008	0.96	0.0	0.05	9.60	0.01	2.058	8.59	0.00	13.6	86.4	0.0	-4.76	0.77	0.80	—	4.3	0.003	0.76	0.0	0.05	12.09	0.00	2.177	14.52	0.00	8.9	91.1	0.0	-1.87	0.98	0.78	0.83	—	13584	1695	24	0	27	0	0	logfile
✔	7A96	11686	2023-11-20	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.91	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.002	0.63	0.0	0.04	9.04	0.00	2.114	10.16	0.00	3.3	96.6	0.0	-0.85	0.87	0.89	0.82	—	29811	3783	4	0	0	0	0	logfile
✔	7KPW	22990	2023-11-13	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile
✔	6PVQ	20497	2023-11-17	2019-07-21	4.75	4.68	—	4.6	0.008	1.32	0.0	0.06	13.01	0.01	2.244	9.74	1.15	14.4	85.2	0.4	-5.23	0.66	0.75	—	4.5	0.003	0.81	0.0	0.04	13.47	0.00	2.171	14.10	0.00	11.8	88.0	0.2	-2.25	1.10	0.67	0.77	—	17640	2160	4	0	0	0	0	logfile
✔	7WTH	32786	2023-11-13	2022-02-04	4.3	3.63	—	4.0	0.004	0.78	0.0	0.05	12.97	0.01	2.169	9.08	0.85	8.0	92.0	0.0	-2.03	0.69	0.70	—	3.8	0.004	0.77	0.0	0.05	13.51	0.00	2.154	11.58	0.00	10.6	89.2	0.2	-2.44	1.20	0.69	0.72	—	3257	421	3	0	0	0	0	logfile
✔	6B3o	7040	2023-11-14	2017-09-22	4.1	4.04	—	4.1	0.024	1.82	0.0	0.11	10.99	0.01	2.285	2.28	0.34	2.1	97.6	0.3	1.14	0.69	0.76	—	4.0	0.005	0.75	0.0	0.04	14.24	0.00	2.119	10.89	0.00	4.7	95.0	0.3	0.76	1.67	0.71	0.77	—	7980	1032	3	0	0	0	0	logfile
✔	6NAV	0397	2023-11-17	2018-12-06	4.1	4.14	—	4.1	0.005	0.82	0.0	0.06	8.77	0.00	2.245	4.10	0.00	4.7	95.3	0.0	-2.96	0.62	0.82	—	4.1	0.004	0.63	0.0	0.04	11.69	0.00	2.121	8.30	0.00	6.8	93.2	0.0	-0.83	1.53	0.63	0.84	—	18711	2751	21	0	0	0	0	logfile
✔	7B0S	11970	2023-11-18	2020-11-21	3.6	3.73	—	3.6	0.009	0.77	0.0	0.04	16.13	0.00	2.214	7.36	0.35	6.2	93.8	0.0	-0.53	0.83	0.86	2.66	3.6	0.003	0.56	0.0	0.04	16.88	0.00	2.232	4.20	0.00	2.5	97.5	0.0	1.22	0.34	0.82	0.85	1.84	21076	2572	8	0	12	0	0	logfile
✔	5JUY	8178	2023-11-19	2016-05-10	4.1	4.28	—	4.1	0.009	1.23	0.0	0.05	10.72	0.00	1.447	16.11	0.71	6.6	93.0	0.4	-3.18	0.76	0.55	—	4.1	0.003	0.66	0.0	0.04	12.04	0.00	2.092	12.45	0.00	5.3	94.6	0.1	-0.61	1.62	0.84	0.69	—	76058	9461	32	0	14	0	0	logfile
✔	7ZH6	14725	2023-11-13	2022-04-05	3.67	4.10	0.95	4.2	0.006	0.90	0.0	0.06	16.13	0.01	1.607	26.36	1.26	6.4	93.6	0.0	0.99	0.54	0.73	1.36	4.2	0.003	0.73	0.0	0.04	16.88	0.00	2.217	14.09	0.00	6.0	94.0	0.0	0.95	1.12	0.54	0.74	1.24	3771	478	1	0	1	0	0	logfile
✔	6LQi	0946	2023-11-19	2020-01-13	4.5	4.59	—	4.5	0.003	0.77	0.0	0.04	13.59	0.01	2.203	10.88	0.40	6.4	93.4	0.2	-3.01	0.70	0.75	—	4.5	0.003	0.75	0.0	0.04	13.02	0.00	2.196	10.64	0.00	7.5	92.4	0.1	-0.76	1.53	0.70	0.75	—	26934	3903	3	0	0	0	0	logfile
✔	6PVL	20492	2023-11-18	2019-07-21	4.4	4.48	—	4.4	0.008	1.13	0.0	0.06	11.67	0.01	2.202	6.80	1.39	15.4	84.2	0.5	-5.53	0.69	0.81	—	4.4	0.004	0.85	0.0	0.04	13.22	0.00	2.071	16.18	0.00	12.8	87.0	0.2	-1.56	1.50	0.70	0.82	—	21006	2576	5	0	2	0	0	logfile
✔	6HQE	0252	2023-11-14	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.004	0.77	0.0	0.04	11.97	0.01	2.226	19.13	0.00	2.7	97.3	0.0	1.18	1.68	0.64	0.83	—	9360	1196	52	0	0	0	0	logfile
✔	6S1M	10080	2023-11-17	2019-06-19	4.27	4.52	—	4.3	0.010	1.22	2.0	0.08	17.76	0.01	1.193	13.31	1.46	7.2	91.9	0.8	-3.67	0.74	0.59	—	4.3	0.003	0.74	0.0	0.04	16.15	0.00	2.145	12.90	0.00	4.8	95.2	0.0	-0.58	3.63	0.82	0.76	—	19726	2399	11	50	3	0	0	logfile
✔	7F5U	31467	2023-11-17	2021-06-22	4.1	4.16	—	3.9	0.007	0.80	0.0	0.04	14.71	0.00	2.101	24.28	0.00	12.3	87.6	0.1	-4.58	0.82	0.84	—	3.9	0.003	0.70	0.0	0.04	14.04	0.00	2.136	14.13	0.00	7.4	92.5	0.1	-0.91	0.70	0.82	0.82	—	20744	2740	4	0	0	0	0	logfile

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