Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NBX	12262	2023-07-10	2021-01-28	4.8	5.30	4.72	4.9	0.008	1.04	0.0	0.05	15.90	0.01	1.950	12.59	0.00	12.3	87.6	0.1	-4.49	0.76	0.82	—	4.9	0.004	0.64	0.0	0.04	14.15	0.00	1.865	13.30	0.00	9.7	90.3	0.0	-2.01	0.71	0.76	0.81	—	22637	1475	5	0	0	0	11129	logfile
✔	6PWW	20513	2023-07-15	2019-07-23	4.4	5.49	—	4.5	0.004	0.64	0.0	0.04	25.69	0.00	1.996	21.91	1.22	4.5	95.5	0.0	-2.62	0.92	0.84	—	4.5	0.005	0.71	0.0	0.04	25.29	0.00	2.033	28.66	0.00	5.5	94.5	0.0	-1.18	0.68	0.92	0.85	—	18174	1550	14	292	1	0	0	logfile
✔	7R6L	24281	2023-07-04	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.73	0.0	0.04	16.40	0.01	1.882	7.54	0.00	0.0	0.0	0.0	—	0.09	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	6B3o	7040	2023-07-04	2017-09-22	4.1	4.04	—	4.1	0.024	1.82	0.0	0.11	10.99	0.01	2.285	2.28	0.34	2.1	97.6	0.3	1.14	0.69	0.76	—	4.0	0.005	0.75	0.0	0.04	14.24	0.00	2.119	10.89	0.00	4.7	95.0	0.3	0.76	1.67	0.71	0.77	—	7980	1032	3	0	0	0	0	logfile
✔	6YTK	10917	2023-07-18	2020-04-24	4.07	3.60	4.00	3.9	0.003	0.58	0.0	0.04	13.76	0.00	1.844	7.84	0.00	2.3	97.7	0.0	-0.29	0.65	0.81	—	3.9	0.003	0.58	0.0	0.04	13.81	0.00	2.164	8.57	0.00	3.2	96.8	0.0	2.52	0.74	0.65	0.81	—	41620	5340	20	0	0	0	0	logfile
✔	6BF8	7092	2023-07-07	2017-10-26	4.2	4.69	4.96	7.4	0.007	1.21	0.0	0.06	11.02	0.01	2.252	7.53	0.00	3.8	96.2	0.0	-4.13	0.80	0.71	—	4.0	0.006	0.94	0.0	0.05	12.91	0.01	2.020	39.14	0.00	10.8	89.2	0.0	-2.19	2.36	0.82	0.75	—	15412	1888	2	0	0	0	0	logfile
✔	6K0B	9900	2023-07-12	2019-05-05	4.3	4.49	—	4.2	0.003	0.78	0.0	0.04	14.21	0.01	2.011	5.73	0.66	6.1	93.9	0.0	-3.67	0.84	0.69	—	4.2	0.003	0.67	0.0	0.04	15.27	0.01	2.109	20.51	0.00	6.6	93.4	0.0	-0.69	1.79	0.88	0.79	—	25908	1376	16	682	2	0	0	logfile
✔	6QLD	4579	2023-07-13	2019-01-31	4.15	4.29	—	4.1	0.004	0.86	1.0	0.05	21.51	0.01	2.289	5.03	0.25	5.1	94.8	0.2	-3.52	0.83	0.76	—	4.1	0.005	0.70	0.0	0.04	21.38	0.00	2.151	14.66	0.00	6.0	93.9	0.0	0.64	0.74	0.83	0.76	—	29086	3157	22	248	0	0	0	logfile
✔	7MJP	23881	2023-07-07	2021-04-20	4.2	4.40	—	4.3	0.008	1.11	0.0	0.07	6.51	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.60	0.0	0.05	4.85	0.00	2.276	0.87	0.00	6.8	93.2	0.0	-0.45	0.44	0.56	0.69	—	14163	2818	10	0	8	0	0	logfile
✔	6Ji1	9832	2023-07-07	2019-02-19	4.1	4.20	—	4.1	0.010	1.26	0.0	0.06	11.77	0.01	2.250	7.50	0.57	11.2	83.5	5.3	-4.78	0.61	0.71	—	4.1	0.004	0.82	0.0	0.04	12.95	0.01	2.136	13.76	0.00	9.5	89.9	0.7	-1.24	0.85	0.58	0.72	—	13992	1848	4	0	0	0	0	logfile
✔	6DVW	8919	2023-07-10	2018-06-25	4.3	4.35	—	4.3	0.008	1.19	0.0	0.06	11.88	0.01	1.840	5.62	0.87	15.9	83.7	0.4	-5.79	0.68	0.80	—	4.3	0.004	0.80	0.0	0.04	13.27	0.00	2.102	12.09	0.00	14.6	85.1	0.3	-1.90	0.87	0.67	0.80	—	21004	2576	4	0	0	0	0	logfile
✔	6XRE	22294	2023-07-09	2020-07-12	4.6	7.52	—	4.5	0.011	1.16	1.0	0.07	10.73	0.01	0.771	5.15	0.24	7.9	91.5	0.6	-3.72	0.62	0.29	—	4.5	0.004	0.75	0.0	0.04	11.99	0.01	1.838	19.46	0.00	14.8	85.2	0.0	-2.98	0.93	0.85	0.65	—	68542	4289	18	0	9	0	34248	logfile
✔	7DTU	30854	2023-07-05	2021-01-06	4.4	4.54	—	3.7	0.006	0.90	0.0	0.06	14.57	0.01	2.277	6.85	0.00	9.4	90.6	0.0	-3.95	0.68	0.79	—	3.7	0.003	0.62	0.0	0.04	13.14	0.00	2.169	11.99	0.00	6.5	93.5	0.0	-0.70	1.10	0.68	0.80	—	10846	1558	8	0	14	0	0	logfile
✔	5KGF	8246	2023-07-07	2016-06-13	4.54	4.64	—	4.5	0.009	1.37	2.0	0.07	27.90	0.01	1.243	27.10	0.12	6.5	93.1	0.4	-4.86	0.79	0.76	—	4.5	0.005	0.74	0.0	0.04	26.39	0.01	2.121	20.23	0.00	7.0	92.8	0.2	-0.78	1.06	0.83	0.84	—	13782	986	14	290	0	0	0	logfile
✔	7A96	11686	2023-07-14	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.91	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.002	0.63	0.0	0.04	9.04	0.00	2.114	10.16	0.00	3.3	96.6	0.0	-0.85	0.87	0.89	0.82	—	29811	3783	4	0	0	0	0	logfile
✔	7EU8	31309	2023-07-09	2021-05-16	4.07	4.11	—	3.6	0.002	0.42	0.0	0.10	7.80	0.00	2.206	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.002	0.62	0.0	0.06	8.46	0.00	2.129	7.57	0.00	3.8	96.0	0.2	0.14	1.37	0.79	0.69	—	18670	3010	8	0	8	0	0	logfile
✔	7D43	30568	2023-07-14	2020-09-22	4.3	4.40	—	4.3	0.006	0.99	0.0	0.05	14.62	0.01	2.018	28.49	0.31	18.3	81.6	0.1	-6.11	0.83	0.79	—	4.3	0.005	0.79	0.0	0.05	13.78	0.00	2.083	20.44	0.00	12.6	87.3	0.0	-2.75	1.57	0.83	0.78	—	31009	4347	14	0	0	0	0	logfile
✔	7X24	32957	2023-07-05	2022-02-25	3.4	2.84	3.24	3.2	0.006	1.21	0.0	0.05	15.74	0.01	2.080	8.34	0.00	4.0	96.0	0.0	0.37	0.65	0.82	2.68	3.1	0.004	0.61	0.0	0.04	16.67	0.00	1.956	9.40	0.00	4.9	95.1	0.0	0.14	0.29	0.66	0.84	2.54	10286	1263	4	0	14	0	0	logfile
✔	5LY6	4118	2023-07-03	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.003	0.77	0.0	0.04	13.91	0.00	2.223	14.60	0.00	8.3	91.5	0.2	-2.31	3.59	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	7PKB	13467	2023-07-08	2021-08-25	3.2	2.68	3.08	3.1	0.008	0.90	0.0	0.14	13.28	0.01	1.950	3.97	0.00	5.1	94.8	0.1	-0.98	0.72	0.85	5.32	3.2	0.003	0.70	0.0	0.14	13.54	0.00	2.127	2.91	0.00	3.4	96.6	0.0	-0.34	0.58	0.73	0.87	4.70	16145	1030	15	0	10	5	7970	logfile

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