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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8B3A | 15824 | 2023-08-09 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.009 | 1.89 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.077 | 6.38 | 29.0 | 0.43 | 20.27 | 0.05 | 1.653 | 309.17 | 6.67 | 46.7 | 8.0 | 45.3 | -10.71 | 2.72 | 0.41 | 0.54 | 3.39 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 7UUQ | 26800 | 2023-08-09 | 2022-04-28 | 3.1 | 3.45 | 2.98 | 3.3 | 0.014 | 2.95 | 0.0 | 0.06 | 20.39 | 0.01 | 1.865 | 20.35 | 0.00 | 0.0 | 100.0 | 0.0 | -9.31 | 0.68 | 0.85 | 2.95 | 3.3 | 0.118 | 4.71 | 11.0 | 0.23 | 25.10 | 0.02 | 1.642 | 53.03 | 1.10 | 65.5 | 31.5 | 3.0 | -10.63 | 0.67 | 0.73 | 0.90 | 3.96 | 4760 | 364 | 98 | 0 | 98 | 0 | 0 | logfile |
✔ | 7LQF | 23484 | 2023-08-09 | 2021-02-13 | 3.8 | 3.13 | — | 4.0 | 0.016 | 1.46 | 0.0 | 0.03 | 18.37 | 0.00 | 2.258 | 22.81 | 2.08 | 0.0 | 100.0 | 0.0 | -4.77 | 0.59 | 0.78 | 4.63 | 3.2 | 0.154 | 6.37 | 244.0 | 0.42 | 26.01 | 0.03 | 1.685 | 217.72 | 5.21 | 66.8 | 30.1 | 3.1 | -9.48 | 1.76 | 0.69 | 0.86 | 2.78 | 5376 | 512 | 64 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQE | 23483 | 2023-08-09 | 2021-02-13 | 3.4 | 3.06 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.423 | 23.27 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.57 | 0.80 | 5.06 | 3.2 | 0.151 | 5.20 | 240.0 | 0.38 | 25.46 | 0.02 | 1.745 | 134.94 | 4.40 | 60.8 | 38.2 | 1.0 | -8.67 | 1.67 | 0.65 | 0.89 | 2.25 | 6048 | 576 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BWi | 7299 | 2023-08-17 | 2017-12-15 | 3.7 | 3.76 | — | 3.7 | 0.011 | 1.39 | 4.0 | 0.09 | 12.09 | 0.01 | 1.745 | 22.56 | 1.36 | 8.1 | 91.5 | 0.4 | -5.08 | 0.67 | 0.73 | 2.06 | 3.7 | 0.089 | 4.99 | 124.0 | 0.27 | 21.79 | 0.03 | 1.600 | 112.56 | 5.62 | 43.9 | 49.5 | 6.5 | -8.57 | 2.58 | 0.80 | 0.86 | 2.01 | 23491 | 2484 | 8 | 0 | 813 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2023-08-12 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.1 | 0.110 | 4.37 | 186.0 | 0.30 | 23.67 | 0.02 | 1.819 | 120.04 | 3.70 | 35.6 | 64.4 | 0.0 | -8.04 | 1.65 | 0.66 | 0.86 | 3.86 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQH | 23486 | 2023-08-12 | 2021-02-13 | 3.4 | 3.12 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.098 | 31.15 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.59 | 0.80 | 5.83 | 3.2 | 0.111 | 4.25 | 190.0 | 0.31 | 24.04 | 0.02 | 1.610 | 112.99 | 4.28 | 40.1 | 59.5 | 0.3 | -8.01 | 3.50 | 0.66 | 0.87 | 3.32 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8F | 10120 | 2023-08-22 | 2019-07-09 | 4.0 | 4.88 | — | 3.9 | 0.007 | 1.26 | 0.0 | 0.06 | 11.68 | 0.01 | 1.859 | 6.71 | 0.80 | 9.6 | 90.3 | 0.1 | -4.38 | 0.88 | 0.77 | — | 3.9 | 0.042 | 2.95 | 51.0 | 0.11 | 17.89 | 0.02 | 1.488 | 187.53 | 3.85 | 53.1 | 44.5 | 2.4 | -7.96 | 2.39 | 0.90 | 0.88 | — | 33664 | 3530 | 4 | 0 | 1616 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2023-08-11 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.47 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.048 | 3.15 | 43.0 | 0.12 | 19.35 | 0.02 | 1.814 | 99.41 | 4.32 | 39.9 | 58.2 | 1.9 | -7.71 | 2.86 | 0.73 | 0.81 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 7K0S | 22615 | 2023-08-12 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 13.91 | 0.00 | 2.069 | 9.69 | 0.95 | 7.8 | 92.0 | 0.2 | -0.12 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.18 | 225.0 | 0.13 | 17.01 | 0.02 | 1.355 | 135.88 | 0.00 | 44.3 | 52.4 | 3.3 | -7.51 | 2.27 | 0.84 | 0.82 | — | 115935 | 12896 | 8 | 0 | 3557 | 0 | 0 | logfile |
✔ | 7TDK | 25832 | 2023-08-13 | 2021-12-31 | 3.8 | 4.07 | 3.85 | 3.8 | 0.004 | 0.87 | 0.0 | 0.04 | 15.75 | 0.01 | 2.210 | 4.97 | 0.46 | 5.7 | 94.1 | 0.1 | -0.20 | 0.85 | 0.77 | 1.07 | 3.8 | 0.051 | 3.21 | 71.0 | 0.14 | 19.99 | 0.02 | 1.573 | 100.23 | 3.61 | 38.4 | 59.1 | 2.5 | -7.48 | 2.34 | 0.89 | 0.86 | 1.15 | 117136 | 12936 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 7K0T | 22616 | 2023-08-12 | 2020-09-05 | 4.3 | 4.52 | 4.29 | 4.2 | 0.003 | 0.65 | 1.0 | 0.04 | 13.80 | 0.00 | 1.909 | 7.65 | 0.63 | 7.5 | 92.4 | 0.2 | -0.19 | 0.84 | 0.76 | — | 4.2 | 0.036 | 2.69 | 59.0 | 0.11 | 15.80 | 0.02 | 1.195 | 109.81 | 0.00 | 43.4 | 55.0 | 1.6 | -7.43 | 1.92 | 0.86 | 0.83 | — | 115905 | 12820 | 8 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7TDG | 25828 | 2023-08-13 | 2021-12-31 | 3.8 | 4.00 | 3.85 | 3.8 | 0.086 | 0.81 | 1.0 | 0.04 | 13.97 | 0.00 | 0.831 | 7.84 | 0.28 | 6.6 | 93.4 | 0.1 | -0.49 | 0.83 | 0.79 | 0.99 | 3.8 | 0.056 | 3.18 | 114.0 | 0.16 | 19.71 | 0.02 | 1.714 | 88.48 | 3.87 | 38.2 | 59.5 | 2.3 | -7.40 | 1.18 | 0.86 | 0.86 | 1.36 | 117345 | 12936 | 8 | 0 | 3624 | 0 | 0 | logfile |
✔ | 7TDJ | 25831 | 2023-08-13 | 2021-12-31 | 3.7 | 3.93 | 3.79 | 3.8 | 0.005 | 0.91 | 0.0 | 0.04 | 15.74 | 0.01 | 2.223 | 5.62 | 0.37 | 6.0 | 93.9 | 0.2 | -0.38 | 0.85 | 0.77 | 1.01 | 3.7 | 0.056 | 3.34 | 152.0 | 0.16 | 20.01 | 0.02 | 1.738 | 94.23 | 2.94 | 37.0 | 60.2 | 2.7 | -7.31 | 1.34 | 0.89 | 0.86 | 1.52 | 117112 | 12932 | 12 | 0 | 3616 | 8 | 0 | logfile |
✔ | 6oDY | 20024 | 2023-08-19 | 2019-03-27 | 3.8 | 3.40 | — | 3.2 | 0.010 | 1.59 | 18.0 | 0.11 | 15.38 | 0.01 | 1.264 | 18.28 | 3.15 | 16.6 | 83.3 | 0.0 | -5.02 | 0.66 | 0.62 | 1.16 | 3.2 | 0.030 | 3.05 | 5.0 | 0.14 | 20.12 | 0.02 | 1.721 | 102.91 | 3.91 | 37.7 | 61.0 | 1.3 | -7.26 | 1.53 | 0.69 | 0.69 | 1.79 | 28116 | 2832 | 6 | 0 | 1326 | 0 | 0 | logfile |
✔ | 7TDH | 25829 | 2023-08-13 | 2021-12-31 | 4.0 | 4.95 | 4.67 | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.63 | 0.00 | 2.254 | 4.64 | 0.00 | 5.1 | 94.9 | 0.0 | -1.74 | 0.84 | 0.67 | — | 4.5 | 0.030 | 2.65 | 66.0 | 0.11 | 19.67 | 0.02 | 0.888 | 153.73 | 3.43 | 43.9 | 54.5 | 1.5 | -7.26 | 2.44 | 0.88 | 0.83 | — | 117532 | 13060 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 8HiA | 34813 | 2023-08-10 | 2022-11-19 | 4.9 | 4.49 | 2.13 | 9.6 | 0.001 | 0.36 | 0.0 | 0.05 | 15.83 | 0.00 | 2.251 | 1.11 | 2.86 | 12.1 | 87.6 | 0.2 | -4.39 | 0.47 | 0.07 | — | 9.3 | 0.006 | 0.81 | 0.0 | 0.05 | 13.96 | 0.00 | 2.003 | 41.39 | 4.76 | 14.3 | 85.7 | 0.0 | -7.09 | 12.61 | 0.65 | 0.22 | — | 7200 | 460 | 20 | 0 | 0 | 0 | 3660 | logfile |
✔ | 7TDi | 25830 | 2023-08-13 | 2021-12-31 | 3.3 | 3.81 | 3.62 | 3.6 | 0.005 | 0.81 | 0.0 | 0.04 | 16.22 | 0.01 | 2.159 | 4.24 | 0.85 | 4.4 | 95.5 | 0.1 | -0.18 | 0.82 | 0.72 | 0.41 | 3.6 | 0.060 | 3.45 | 153.0 | 0.17 | 19.75 | 0.02 | 1.655 | 78.91 | 3.69 | 33.8 | 63.9 | 2.3 | -7.06 | 1.45 | 0.89 | 0.87 | 1.83 | 117132 | 12936 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 7LQi | 23487 | 2023-08-10 | 2021-02-13 | 3.5 | 3.92 | — | 3.9 | 0.016 | 1.40 | 0.0 | 0.03 | 20.42 | 0.00 | 2.242 | 22.86 | 5.00 | 0.0 | 100.0 | 0.0 | -3.42 | 0.62 | 0.78 | 4.80 | 3.9 | 0.051 | 2.84 | 5.0 | 0.14 | 22.95 | 0.01 | 1.918 | 120.77 | 3.33 | 46.5 | 53.5 | 0.0 | -7.05 | 1.54 | 0.65 | 0.83 | 2.52 | 8400 | 800 | 100 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UMZ | 26610 | 2023-08-11 | 2022-04-08 | 3.09 | 3.37 | 3.21 | 3.3 | 0.004 | 0.87 | 0.0 | 0.04 | 17.35 | 0.01 | 2.198 | 7.00 | 2.38 | 6.1 | 93.3 | 0.6 | -1.01 | 0.68 | 0.70 | 1.58 | 3.3 | 0.060 | 2.98 | 178.0 | 0.19 | 19.49 | 0.02 | 0.810 | 51.66 | 2.96 | 27.0 | 70.3 | 2.8 | -6.90 | 1.64 | 0.75 | 0.86 | 2.31 | 111437 | 12516 | 12 | 0 | 3221 | 8 | 0 | logfile |