Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B3A	15824	2023-08-09	2022-09-16	3.8	3.66	2.91	4.1	0.009	1.89	0.0	0.10	27.06	0.09	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.077	6.38	29.0	0.43	20.27	0.05	1.653	309.17	6.67	46.7	8.0	45.3	-10.71	2.72	0.41	0.54	3.39	2010	210	30	0	60	0	0	logfile
✔	7UUQ	26800	2023-08-09	2022-04-28	3.1	3.45	2.98	3.3	0.014	2.95	0.0	0.06	20.39	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.118	4.71	11.0	0.23	25.10	0.02	1.642	53.03	1.10	65.5	31.5	3.0	-10.63	0.67	0.73	0.90	3.96	4760	364	98	0	98	0	0	logfile
✔	7LQF	23484	2023-08-09	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.37	244.0	0.42	26.01	0.03	1.685	217.72	5.21	66.8	30.1	3.1	-9.48	1.76	0.69	0.86	2.78	5376	512	64	0	0	0	0	logfile
✔	7LQE	23483	2023-08-09	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.151	5.20	240.0	0.38	25.46	0.02	1.745	134.94	4.40	60.8	38.2	1.0	-8.67	1.67	0.65	0.89	2.25	6048	576	72	0	0	0	0	logfile
✔	6BWi	7299	2023-08-17	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.09	0.01	1.745	22.56	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.99	124.0	0.27	21.79	0.03	1.600	112.56	5.62	43.9	49.5	6.5	-8.57	2.58	0.80	0.86	2.01	23491	2484	8	0	813	0	0	logfile
✔	7LQG	23485	2023-08-12	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.1	0.110	4.37	186.0	0.30	23.67	0.02	1.819	120.04	3.70	35.6	64.4	0.0	-8.04	1.65	0.66	0.86	3.86	12096	1152	144	0	0	0	0	logfile
✔	7LQH	23486	2023-08-12	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.111	4.25	190.0	0.31	24.04	0.02	1.610	112.99	4.28	40.1	59.5	0.3	-8.01	3.50	0.66	0.87	3.32	12096	1152	144	0	0	0	0	logfile
✔	6S8F	10120	2023-08-22	2019-07-09	4.0	4.88	—	3.9	0.007	1.26	0.0	0.06	11.68	0.01	1.859	6.71	0.80	9.6	90.3	0.1	-4.38	0.88	0.77	—	3.9	0.042	2.95	51.0	0.11	17.89	0.02	1.488	187.53	3.85	53.1	44.5	2.4	-7.96	2.39	0.90	0.88	—	33664	3530	4	0	1616	0	0	logfile
✔	3J9L	2871	2023-08-11	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	81.48	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.048	3.15	43.0	0.12	19.35	0.02	1.814	99.41	4.32	39.9	58.2	1.9	-7.71	2.86	0.73	0.81	—	112951	8688	31	0	8320	0	0	logfile
✔	7K0S	22615	2023-08-12	2020-09-05	4.5	4.73	4.68	4.6	0.003	0.64	2.0	0.04	13.91	0.00	2.069	9.69	0.95	7.8	92.0	0.2	-0.12	0.80	0.73	—	4.6	0.043	3.18	225.0	0.13	17.01	0.02	1.355	135.88	0.00	44.3	52.4	3.3	-7.51	2.27	0.84	0.82	—	115935	12896	8	0	3557	0	0	logfile
✔	7TDK	25832	2023-08-13	2021-12-31	3.8	4.07	3.85	3.8	0.004	0.87	0.0	0.04	15.75	0.01	2.210	4.97	0.46	5.7	94.1	0.1	-0.20	0.85	0.77	1.07	3.8	0.051	3.21	71.0	0.14	19.99	0.02	1.573	100.23	3.61	38.4	59.1	2.5	-7.48	2.34	0.89	0.86	1.15	117136	12936	8	0	3616	0	0	logfile
✔	7K0T	22616	2023-08-12	2020-09-05	4.3	4.52	4.29	4.2	0.003	0.65	1.0	0.04	13.80	0.00	1.909	7.65	0.63	7.5	92.4	0.2	-0.19	0.84	0.76	—	4.2	0.036	2.69	59.0	0.11	15.80	0.02	1.195	109.81	0.00	43.4	55.0	1.6	-7.43	1.92	0.86	0.83	—	115905	12820	8	0	3608	0	0	logfile
✔	7TDG	25828	2023-08-13	2021-12-31	3.8	4.00	3.85	3.8	0.086	0.81	1.0	0.04	13.97	0.00	0.831	7.84	0.28	6.6	93.4	0.1	-0.49	0.83	0.79	0.99	3.8	0.056	3.18	114.0	0.16	19.71	0.02	1.714	88.48	3.87	38.2	59.5	2.3	-7.40	1.18	0.86	0.86	1.36	117345	12936	8	0	3624	0	0	logfile
✔	7TDJ	25831	2023-08-13	2021-12-31	3.7	3.93	3.79	3.8	0.005	0.91	0.0	0.04	15.74	0.01	2.223	5.62	0.37	6.0	93.9	0.2	-0.38	0.85	0.77	1.01	3.7	0.056	3.34	152.0	0.16	20.01	0.02	1.738	94.23	2.94	37.0	60.2	2.7	-7.31	1.34	0.89	0.86	1.52	117112	12932	12	0	3616	8	0	logfile
✔	6oDY	20024	2023-08-19	2019-03-27	3.8	3.40	—	3.2	0.010	1.59	18.0	0.11	15.38	0.01	1.264	18.28	3.15	16.6	83.3	0.0	-5.02	0.66	0.62	1.16	3.2	0.030	3.05	5.0	0.14	20.12	0.02	1.721	102.91	3.91	37.7	61.0	1.3	-7.26	1.53	0.69	0.69	1.79	28116	2832	6	0	1326	0	0	logfile
✔	7TDH	25829	2023-08-13	2021-12-31	4.0	4.95	4.67	4.5	0.003	0.77	0.0	0.04	13.63	0.00	2.254	4.64	0.00	5.1	94.9	0.0	-1.74	0.84	0.67	—	4.5	0.030	2.65	66.0	0.11	19.67	0.02	0.888	153.73	3.43	43.9	54.5	1.5	-7.26	2.44	0.88	0.83	—	117532	13060	8	0	3616	0	0	logfile
✔	8HiA	34813	2023-08-10	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.3	0.006	0.81	0.0	0.05	13.96	0.00	2.003	41.39	4.76	14.3	85.7	0.0	-7.09	12.61	0.65	0.22	—	7200	460	20	0	0	0	3660	logfile
✔	7TDi	25830	2023-08-13	2021-12-31	3.3	3.81	3.62	3.6	0.005	0.81	0.0	0.04	16.22	0.01	2.159	4.24	0.85	4.4	95.5	0.1	-0.18	0.82	0.72	0.41	3.6	0.060	3.45	153.0	0.17	19.75	0.02	1.655	78.91	3.69	33.8	63.9	2.3	-7.06	1.45	0.89	0.87	1.83	117132	12936	8	0	3616	0	0	logfile
✔	7LQi	23487	2023-08-10	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.77	3.33	46.5	53.5	0.0	-7.05	1.54	0.65	0.83	2.52	8400	800	100	0	0	0	0	logfile
✔	7UMZ	26610	2023-08-11	2022-04-08	3.09	3.37	3.21	3.3	0.004	0.87	0.0	0.04	17.35	0.01	2.198	7.00	2.38	6.1	93.3	0.6	-1.01	0.68	0.70	1.58	3.3	0.060	2.98	178.0	0.19	19.49	0.02	0.810	51.66	2.96	27.0	70.3	2.8	-6.90	1.64	0.75	0.86	2.31	111437	12516	12	0	3221	8	0	logfile

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