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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6U5H | 20646 | 2022-05-12 | 2019-08-27 | 4.0 | 3.67 | — | 3.7 | 0.005 | 1.07 | 0.0 | 0.06 | 8.74 | 0.01 | 2.234 | 9.36 | 0.39 | 13.6 | 86.4 | 0.0 | -5.23 | 0.41 | 0.68 | — | 3.7 | 0.014 | 1.48 | 1.0 | 0.05 | 15.62 | 0.01 | 2.118 | 24.19 | 0.00 | 15.4 | 84.6 | 0.0 | -5.04 | 0.93 | 0.42 | 0.70 | — | 7326 | 954 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L1U | 0803 | 2022-05-13 | 2019-09-30 | 3.37 | 3.54 | — | 3.5 | 0.009 | 0.73 | 0.0 | 0.06 | 15.49 | 0.00 | 2.138 | 15.24 | 0.00 | 15.8 | 84.2 | 0.0 | -6.06 | 0.47 | 0.83 | 2.58 | 3.4 | 0.007 | 0.77 | 0.0 | 0.05 | 16.68 | 0.00 | 2.152 | 13.15 | 1.08 | 17.3 | 82.7 | 0.0 | -5.04 | 1.97 | 0.48 | 0.85 | 2.84 | 10515 | 1500 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FLT | 4276 | 2022-05-12 | 2018-01-28 | 3.42 | 3.32 | — | 3.5 | 0.014 | 1.15 | 0.0 | 0.06 | 8.31 | 0.00 | 2.330 | 9.03 | 0.00 | 14.3 | 85.7 | 0.0 | -5.36 | 0.44 | 0.74 | 2.91 | 3.5 | 0.005 | 0.67 | 0.0 | 0.05 | 10.57 | 0.00 | 2.300 | 12.13 | 0.00 | 20.7 | 79.3 | 0.0 | -5.03 | 2.04 | 0.42 | 0.79 | 4.07 | 8060 | 580 | 10 | 0 | 0 | 0 | 4100 | logfile |
✔ | 7KXY | 23067 | 2022-05-13 | 2020-12-05 | 4.4 | 4.55 | 4.44 | 4.5 | 0.004 | 0.82 | 0.0 | 0.05 | 15.13 | 0.01 | 2.197 | 19.44 | 7.18 | 26.0 | 69.8 | 4.2 | -5.90 | 0.63 | 0.60 | — | 4.5 | 0.004 | 0.88 | 0.0 | 0.05 | 14.67 | 0.01 | 2.083 | 26.47 | 0.00 | 18.8 | 81.1 | 0.1 | -4.97 | 0.60 | 0.64 | 0.62 | — | 9510 | 1181 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VQQ | 32092 | 2022-05-12 | 2021-10-20 | 2.9 | 2.61 | — | 3.1 | 0.009 | 0.85 | 0.0 | 0.05 | 11.51 | 0.01 | 2.233 | 2.49 | 0.00 | 12.4 | 87.6 | 0.0 | -6.09 | 0.47 | 0.86 | 4.62 | 3.1 | 0.004 | 0.72 | 0.0 | 0.04 | 12.71 | 0.00 | 2.270 | 1.38 | 0.91 | 4.1 | 95.9 | 0.0 | -4.95 | 0.28 | 0.48 | 0.87 | 4.50 | 1968 | 273 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H3J | 0134 | 2022-05-14 | 2018-07-18 | 3.7 | 3.83 | — | 3.7 | 0.007 | 0.87 | 0.0 | 0.05 | 10.17 | 0.00 | 2.025 | 43.43 | 0.05 | 23.8 | 76.2 | 0.0 | -6.63 | 0.77 | 0.85 | 3.89 | 3.7 | 0.005 | 0.65 | 0.0 | 0.04 | 13.39 | 0.00 | 1.860 | 56.31 | 0.32 | 21.3 | 78.7 | 0.0 | -4.95 | 2.68 | 0.78 | 0.86 | 2.86 | 20301 | 2511 | 3 | 0 | 0 | 0 | 212 | logfile |
✔ | 5o3T | 3743 | 2022-05-13 | 2017-05-24 | 3.4 | 3.55 | 3.25 | 4.0 | 0.007 | 0.92 | 0.0 | 0.06 | 10.15 | 0.01 | 2.301 | 15.23 | 1.56 | 14.1 | 85.9 | 0.0 | -6.47 | 0.53 | 0.63 | 2.13 | 3.5 | 0.003 | 0.64 | 0.0 | 0.05 | 12.81 | 0.00 | 2.146 | 10.56 | 0.16 | 10.4 | 89.6 | 0.0 | -4.94 | 1.53 | 0.50 | 0.71 | 3.01 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✔ | 6o9J | 0661 | 2022-05-18 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 1.25 | 25.0 | 0.10 | 17.39 | 0.01 | 0.154 | 55.38 | 23.17 | 26.6 | 58.7 | 14.7 | -7.10 | 0.74 | 0.66 | 0.16 | 3.9 | 0.011 | 1.09 | 10.0 | 0.05 | 17.02 | 0.01 | 1.293 | 32.80 | 0.58 | 23.4 | 73.7 | 3.0 | -4.89 | 1.14 | 0.79 | 0.75 | 0.36 | 142682 | 5731 | 53 | 4564 | 0 | 0 | 0 | logfile |
✔ | 6VW2 | 21410 | 2022-05-12 | 2020-02-18 | 3.4 | 3.62 | — | 3.8 | 0.006 | 1.13 | 0.0 | 0.06 | 14.20 | 0.01 | 2.292 | 24.13 | 0.00 | 27.3 | 72.7 | 0.0 | -4.46 | 0.42 | 0.71 | 2.71 | 3.9 | 0.005 | 0.96 | 0.0 | 0.05 | 14.94 | 0.00 | 2.171 | 15.12 | 0.95 | 19.5 | 80.5 | 0.0 | -4.88 | 0.44 | 0.40 | 0.72 | 1.55 | 1800 | 240 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y1A | 10669 | 2022-05-12 | 2020-02-11 | 4.2 | 3.60 | 1.84 | 4.3 | 0.005 | 1.09 | 0.0 | 0.07 | 9.42 | 0.00 | 2.509 | 15.01 | 0.00 | 4.3 | 95.7 | 0.0 | -4.99 | 0.53 | 0.63 | — | 4.2 | 0.005 | 0.76 | 0.0 | 0.04 | 11.27 | 0.00 | 2.048 | 15.89 | 0.00 | 9.8 | 90.2 | 0.0 | -4.83 | 1.55 | 0.57 | 0.76 | — | 2960 | 400 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 6SST | 10305 | 2022-05-12 | 2019-09-09 | 3.4 | 3.46 | — | 3.4 | 0.009 | 0.94 | 0.0 | 0.07 | 16.79 | 0.00 | 2.430 | 5.73 | 2.13 | 10.1 | 89.9 | 0.0 | -4.47 | 0.56 | 0.80 | 6.33 | 3.4 | 0.005 | 0.69 | 0.0 | 0.05 | 15.22 | 0.00 | 2.342 | 10.76 | 0.21 | 14.6 | 85.4 | 0.0 | -4.82 | 0.49 | 0.59 | 0.84 | 5.27 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VE2 | 21152 | 2022-05-16 | 2019-12-28 | 4.3 | 4.80 | 4.34 | 4.2 | 0.006 | 1.23 | 0.0 | 0.07 | 5.37 | 0.01 | 2.173 | 16.97 | 0.00 | 4.7 | 94.9 | 0.5 | -0.93 | 0.83 | 0.70 | — | 4.2 | 0.007 | 1.24 | 0.0 | 0.05 | 10.04 | 0.01 | 2.049 | 33.59 | 0.00 | 21.9 | 77.6 | 0.6 | -4.75 | 1.35 | 0.89 | 0.76 | — | 30198 | 6153 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R4R | 4727 | 2022-05-12 | 2019-03-23 | 3.4 | 3.01 | 1.77 | 3.8 | 0.008 | 1.43 | 0.0 | 0.08 | 10.87 | 0.01 | 2.308 | 6.73 | 0.00 | 12.0 | 88.0 | 0.0 | -5.16 | 0.32 | 0.64 | 5.08 | 3.7 | 0.006 | 0.86 | 0.0 | 0.05 | 16.98 | 0.01 | 2.114 | 17.42 | 0.68 | 10.9 | 89.1 | 0.0 | -4.75 | 3.88 | 0.31 | 0.68 | 3.78 | 4312 | 539 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZLU | 6934 | 2022-05-22 | 2018-03-29 | 3.6 | 3.66 | — | 3.6 | 0.008 | 1.26 | 2.0 | 0.07 | 18.68 | 0.01 | 0.401 | 13.59 | 2.52 | 18.9 | 79.1 | 1.9 | -5.90 | 0.78 | 0.77 | 1.74 | 3.6 | 0.007 | 1.01 | 2.0 | 0.05 | 18.91 | 0.01 | 1.656 | 14.56 | 0.23 | 20.5 | 78.7 | 0.9 | -4.73 | 1.21 | 0.78 | 0.79 | 0.91 | 150313 | 6529 | 60 | 4596 | 4 | 0 | 0 | logfile |
✔ | 7L7H | 23212 | 2022-05-12 | 2020-12-28 | 4.0 | 2.39 | — | 4.0 | 0.008 | 1.47 | 0.0 | 0.08 | 15.10 | 0.01 | 2.199 | 13.87 | 3.53 | 36.3 | 63.7 | 0.0 | -6.00 | 0.47 | 0.60 | — | 4.0 | 0.005 | 0.99 | 0.0 | 0.06 | 16.55 | 0.00 | 2.113 | 18.49 | 1.96 | 32.1 | 67.9 | 0.0 | -4.69 | 0.91 | 0.51 | 0.65 | — | 2430 | 352 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DJP | 7939 | 2022-05-12 | 2018-05-25 | 4.8 | 5.02 | — | 4.8 | 0.011 | 2.00 | 0.0 | 0.08 | 5.34 | 0.01 | 2.368 | 0.45 | 0.00 | 4.6 | 95.4 | 0.0 | -0.74 | 0.76 | 0.65 | — | 4.8 | 0.009 | 1.27 | 0.0 | 0.05 | 9.47 | 0.01 | 2.140 | 24.14 | 0.00 | 24.7 | 74.7 | 0.6 | -4.67 | 1.25 | 0.82 | 0.77 | — | 7307 | 1393 | 8 | 0 | 23 | 0 | 0 | logfile |
✔ | 3J2P | 5499 | 2022-05-13 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.009 | 1.92 | 0.0 | 0.12 | 17.49 | 0.02 | 2.155 | 110.70 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.004 | 0.95 | 0.0 | 0.05 | 17.92 | 0.01 | 1.899 | 74.82 | 1.47 | 22.8 | 73.8 | 3.4 | -4.64 | 0.91 | 0.39 | 0.73 | 1.07 | 9890 | 1134 | 6 | 0 | 6 | 0 | 1086 | logfile |
✔ | 6NYM | 0546 | 2022-05-14 | 2019-02-11 | 3.6 | 4.42 | — | 4.1 | 0.005 | 0.94 | 0.0 | 0.06 | 10.43 | 0.00 | 2.260 | 8.29 | 0.32 | 12.6 | 87.4 | 0.0 | -5.10 | 0.87 | 0.78 | 2.54 | 4.2 | 0.008 | 0.89 | 0.0 | 0.05 | 13.01 | 0.00 | 2.115 | 20.83 | 0.41 | 21.5 | 78.5 | 0.0 | -4.64 | 1.21 | 0.87 | 0.79 | 2.54 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M61 | 23686 | 2022-05-12 | 2021-03-25 | 3.8 | 3.83 | — | 4.1 | 0.005 | 1.01 | 0.0 | 0.08 | 12.79 | 0.00 | 2.218 | 23.57 | 0.00 | 14.3 | 85.7 | 0.0 | -4.63 | 0.49 | 0.73 | 2.45 | 3.9 | 0.004 | 0.78 | 0.0 | 0.05 | 14.97 | 0.00 | 2.122 | 21.71 | 1.03 | 14.8 | 85.2 | 0.0 | -4.62 | 0.86 | 0.47 | 0.75 | 2.83 | 1690 | 230 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6UUR | 20900 | 2022-05-12 | 2019-10-31 | 3.5 | 3.51 | — | 3.6 | 0.004 | 0.76 | 0.0 | 0.05 | 15.65 | 0.00 | 2.644 | 8.15 | 0.00 | 5.3 | 94.7 | 0.0 | -4.46 | 0.56 | 0.78 | 3.10 | 3.7 | 0.007 | 0.96 | 0.0 | 0.05 | 16.19 | 0.00 | 2.098 | 14.49 | 1.20 | 11.1 | 88.9 | 0.0 | -4.61 | 2.23 | 0.52 | 0.79 | 3.03 | 2770 | 400 | 10 | 0 | 0 | 0 | 0 | logfile |