Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5o3L	3741	2023-08-12	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	9.60	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.004	0.78	0.0	0.05	15.54	0.01	1.937	16.37	0.78	13.9	86.1	0.0	-5.24	2.68	0.57	0.75	2.67	11360	730	10	0	0	0	5790	logfile
✔	7YR6	34047	2023-08-09	2022-08-09	4.8	5.13	4.65	4.7	0.004	0.88	0.0	0.05	20.67	0.00	2.291	7.11	3.30	15.1	84.9	0.0	-5.39	0.81	0.74	—	4.7	0.006	0.85	0.0	0.05	21.69	0.01	2.063	46.62	0.00	26.4	73.6	0.0	-5.22	0.82	0.83	0.81	—	4248	220	5	118	0	0	0	logfile
✔	7YPG	33999	2023-08-09	2022-08-03	2.5	2.00	2.09	3.0	0.008	0.80	0.0	0.06	14.50	0.00	2.331	9.02	0.00	12.3	87.7	0.0	-5.97	0.40	0.82	3.85	3.0	0.003	0.62	0.0	0.05	18.36	0.00	2.260	10.68	3.21	5.6	94.4	0.0	-5.21	0.66	0.41	0.82	3.09	2676	354	6	0	0	0	0	logfile
✔	7Q65	13852	2023-08-09	2021-11-05	3.32	2.96	3.26	3.3	0.016	1.56	0.0	0.10	10.10	0.01	2.159	3.45	8.33	10.5	89.5	0.0	-5.74	0.64	0.85	4.16	3.3	0.003	0.65	0.0	0.03	13.00	0.00	2.080	12.96	1.06	7.7	92.3	0.0	-5.20	0.70	0.57	0.83	4.09	6204	880	22	0	0	0	0	logfile
✔	6N3A	9349	2023-08-09	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.7	0.005	0.90	0.0	0.04	18.94	0.00	2.214	16.77	0.68	10.4	89.6	0.0	-5.19	1.68	0.52	0.79	2.83	4310	600	20	0	0	0	0	logfile
✔	5G2X	3331	2023-08-15	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.005	0.87	0.0	0.04	19.17	0.01	1.949	36.81	0.45	21.6	77.1	1.3	-5.19	1.94	0.80	0.66	0.50	19072	487	3	704	0	0	0	logfile
✔	6N3B	9350	2023-08-09	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.004	0.84	0.0	0.04	16.35	0.01	2.292	25.40	1.13	9.6	90.4	0.0	-5.16	1.50	0.42	0.70	1.16	2735	385	10	0	0	0	0	logfile
✔	6N37	9339	2023-08-09	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.004	0.78	0.0	0.04	18.44	0.00	2.275	19.32	1.20	11.8	88.2	0.0	-5.15	0.91	0.52	0.78	2.20	2580	360	10	0	0	0	0	logfile
✔	6SSX	10307	2023-08-09	2019-09-09	2.98	3.11	—	3.1	0.008	0.94	0.0	0.07	14.94	0.00	2.424	6.14	4.26	12.6	87.4	0.0	-4.73	0.65	0.82	4.81	3.0	0.008	0.80	0.0	0.06	16.95	0.00	2.222	13.38	4.47	13.2	86.8	0.0	-5.14	0.77	0.65	0.86	4.75	4900	730	10	0	0	0	0	logfile
✔	6oSM	20186	2023-08-09	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.007	1.25	0.0	0.07	15.44	0.00	2.184	23.54	1.46	28.1	71.9	0.0	-5.14	3.39	0.44	0.75	3.23	4100	600	10	0	0	0	0	logfile
✔	6ZRR	11383	2023-08-09	2020-07-14	4.0	4.04	3.78	4.3	0.015	1.45	0.0	0.06	13.08	0.00	2.189	28.46	0.00	5.0	95.0	0.0	-4.56	0.62	0.69	—	4.4	0.003	0.68	0.0	0.05	14.26	0.00	2.107	29.56	0.00	16.9	83.1	0.0	-5.10	2.48	0.65	0.74	—	5724	414	18	0	0	0	2664	logfile
✔	7YL7	33903	2023-08-09	2022-07-25	3.3	3.54	3.17	3.5	0.004	1.05	0.0	0.04	11.58	0.00	2.196	22.56	0.00	4.9	95.1	0.0	-5.16	0.45	0.78	4.82	3.4	0.006	0.69	0.0	0.05	13.21	0.00	2.149	8.89	0.31	12.0	88.0	0.0	-5.07	0.83	0.44	0.78	5.15	2988	402	12	0	0	0	0	logfile
✔	6HUD	0274	2023-08-09	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.003	0.72	0.0	0.04	12.84	0.00	2.150	15.41	0.61	3.3	96.7	0.0	-5.02	1.49	0.59	0.78	—	2905	385	5	0	0	0	0	logfile
✔	7V48	31703	2023-08-09	2021-08-12	3.0	2.27	—	3.3	0.002	0.48	0.0	0.05	12.91	0.00	2.295	8.64	0.00	9.8	90.2	0.0	-5.61	0.37	0.75	4.10	3.3	0.003	0.65	0.0	0.05	14.23	0.00	2.197	4.51	4.17	15.6	84.4	0.0	-5.01	0.50	0.39	0.76	4.74	2598	378	6	0	0	0	0	logfile
✔	8A7Q	15224	2023-08-10	2022-06-21	2.8	3.63	2.72	3.4	0.004	0.67	0.0	0.05	11.64	0.00	2.197	7.83	0.00	3.2	96.8	0.0	-5.05	0.45	0.75	5.43	3.4	0.005	1.12	0.0	0.05	15.74	0.00	2.145	19.36	3.42	11.0	89.0	0.0	-5.00	4.62	0.41	0.76	3.48	6492	768	12	0	0	0	0	logfile
✔	5o3T	3743	2023-08-12	2017-05-24	3.4	3.55	3.25	4.0	0.007	0.92	0.0	0.06	10.15	0.01	2.301	14.44	1.56	14.1	85.9	0.0	-6.47	0.53	0.63	2.13	3.5	0.003	0.66	0.0	0.05	13.08	0.00	2.112	11.27	0.00	12.0	88.0	0.0	-4.99	1.54	0.52	0.73	3.04	11360	730	10	0	0	0	5790	logfile
✔	6L1U	0803	2023-08-11	2019-09-30	3.37	3.54	—	3.5	0.011	0.90	0.0	0.06	15.32	0.00	2.138	15.24	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.5	0.007	0.76	0.0	0.05	16.50	0.00	2.159	13.05	1.18	17.0	83.0	0.0	-4.98	1.98	0.48	0.85	2.64	10515	1500	15	0	0	0	0	logfile
✔	7VQQ	32092	2023-08-09	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.006	0.80	0.0	0.04	12.91	0.00	2.234	2.21	0.91	5.6	94.4	0.0	-4.97	0.28	0.48	0.87	4.95	1968	273	3	0	0	0	0	logfile
✔	6SST	10305	2023-08-09	2019-09-09	3.4	3.46	—	3.4	0.009	0.94	0.0	0.07	16.79	0.00	2.430	5.73	2.13	10.1	89.9	0.0	-4.47	0.56	0.80	6.33	3.4	0.008	0.76	0.0	0.06	14.95	0.00	2.266	10.97	0.43	17.2	82.8	0.0	-4.97	0.49	0.59	0.84	4.82	4900	730	10	0	0	0	0	logfile
✔	7UMQ	26607	2023-08-09	2022-04-07	3.29	3.64	3.16	4.2	0.023	2.11	0.0	0.10	9.85	0.01	2.540	2.21	0.00	10.0	90.0	0.0	-3.35	0.51	0.74	5.90	3.8	0.004	0.82	0.0	0.04	14.19	0.00	2.328	17.69	1.03	10.0	90.0	0.0	-4.97	3.38	0.43	0.75	4.50	4380	620	10	0	0	0	0	logfile

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