Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M64	23688	2022-11-29	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.90	0.0	0.04	11.30	0.00	2.242	6.78	0.00	5.2	94.8	0.0	-4.00	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7PY2	13708	2022-11-29	2021-10-08	2.59	2.64	1.53	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.004	0.86	0.0	0.05	18.18	0.00	2.155	2.93	4.00	5.2	94.8	0.0	-3.95	1.38	0.50	0.88	5.97	2152	316	4	0	0	0	0	logfile
✔	7UN5	26613	2022-11-29	2022-04-08	3.13	3.63	3.08	3.6	0.004	0.72	0.0	0.04	14.46	0.00	2.387	12.34	0.51	7.0	93.0	0.0	-3.83	0.40	0.80	4.50	3.6	0.005	0.75	0.0	0.05	15.16	0.00	2.232	12.34	0.77	10.3	89.7	0.0	-3.94	0.50	0.35	0.74	4.69	4380	620	10	0	0	0	0	logfile
✔	7U12	26275	2022-11-29	2022-02-19	3.5	3.59	—	4.4	0.011	1.02	0.0	0.07	16.79	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.3	0.004	0.82	0.0	0.06	15.76	0.00	2.102	13.33	0.79	9.3	90.7	0.0	-3.91	2.90	0.33	0.57	2.24	3456	405	6	0	12	0	0	logfile
✔	5Lii	4053	2022-11-29	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	43.00	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	4.0	0.003	0.91	0.0	0.04	15.81	0.01	2.277	10.79	1.41	12.8	86.5	0.7	-3.88	0.95	0.55	0.65	1.14	3098	433	1	0	0	0	0	logfile
✔	6TJo	10512	2022-11-29	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.80	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.006	0.88	0.0	0.05	13.23	0.00	2.284	10.02	0.35	11.1	88.9	0.0	-3.87	1.40	0.36	0.79	3.90	2439	321	3	0	0	0	0	logfile
✔	6oSJ	20183	2022-11-29	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.79	4.82	2.8	0.003	0.75	0.0	0.06	16.79	0.00	2.235	9.22	5.81	13.4	86.6	0.0	-3.82	0.47	0.52	0.80	4.30	4210	610	10	0	0	0	0	logfile
✔	7SWN	25476	2022-11-29	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.004	0.87	0.0	0.05	13.76	0.01	2.185	26.97	0.00	14.2	85.8	0.0	-3.79	2.09	0.58	0.69	—	3283	422	3	0	0	0	0	logfile
✔	6VPS	21316	2022-11-29	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	4.27	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.88	6.47	2736	279	9	0	0	0	0	logfile
✔	6N3C	0334	2022-11-29	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.003	0.68	0.0	0.04	15.70	0.00	2.372	12.69	1.58	8.2	91.8	0.0	-3.77	2.40	0.51	0.82	3.93	4260	640	20	0	0	0	0	logfile
✔	7QWG	14187	2022-11-29	2022-01-25	3.38	3.26	2.98	3.3	0.012	2.34	10.0	0.15	14.89	0.01	2.525	0.77	0.26	10.0	90.0	0.0	-3.26	0.41	0.82	4.16	3.3	0.005	0.78	0.0	0.05	17.03	0.00	2.189	10.29	0.79	12.8	87.2	0.0	-3.71	2.40	0.38	0.84	3.82	3258	405	3	0	0	0	0	logfile
✔	7XiZ	33213	2022-11-29	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.10	0.0	0.06	18.15	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.82	0.0	0.05	18.16	0.01	2.215	14.34	0.43	16.6	82.6	0.8	-3.64	1.53	0.37	0.73	1.52	2161	267	1	0	2	0	0	logfile
✔	6L4S	0833	2022-11-29	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.35	0.75	2.16	2268	330	6	0	0	0	0	logfile
✔	7CAH	30331	2022-11-29	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.97	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.79	0.0	0.05	15.10	0.01	2.223	15.25	1.11	13.1	86.9	0.0	-3.62	0.49	0.71	0.64	1.73	2889	404	3	0	0	0	0	logfile
✔	6VHL	21207	2022-11-29	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	16.17	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.7	0.003	0.73	0.0	0.04	16.47	0.00	2.338	9.12	0.75	10.7	89.3	0.0	-3.61	2.63	0.27	0.69	3.44	1190	158	4	0	0	0	0	logfile
✔	7LC9	23270	2022-11-29	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.009	0.92	0.0	0.05	16.86	0.00	1.984	46.70	2.65	14.8	85.2	0.0	-3.60	0.67	0.70	0.81	0.10	3497	525	12	0	0	0	0	logfile
✔	7X84	33055	2022-11-29	2022-03-11	3.0	3.07	2.65	3.2	0.008	0.83	0.0	0.06	13.87	0.00	2.259	11.21	0.00	10.3	89.7	0.0	-5.69	0.40	0.84	3.98	3.2	0.004	0.82	0.0	0.05	17.63	0.00	2.117	11.37	2.91	7.0	93.0	0.0	-3.58	2.64	0.38	0.84	3.18	3258	405	3	0	0	0	0	logfile
✔	7V4D	31708	2022-11-29	2021-08-12	3.5	3.38	—	4.0	0.003	0.54	0.0	0.05	11.89	0.00	2.234	14.44	0.00	7.1	92.9	0.0	-5.68	0.41	0.80	4.67	4.1	0.003	0.67	0.0	0.05	12.86	0.00	2.200	8.46	0.00	7.7	92.3	0.0	-3.57	1.19	0.41	0.79	4.19	2376	348	6	0	0	0	0	logfile
✔	7QKK	14045	2022-11-29	2021-12-17	2.8	2.31	2.82	3.2	0.012	2.17	4.0	0.12	13.17	0.02	2.483	1.98	0.00	9.5	90.5	0.0	-3.44	0.37	0.77	4.39	3.2	0.003	0.69	0.0	0.05	17.34	0.00	2.154	11.04	1.52	6.3	93.7	0.0	-3.55	2.17	0.34	0.78	3.12	3537	228	3	0	0	0	1803	logfile
✔	7U11	26274	2022-11-29	2022-02-19	3.2	2.77	—	3.4	0.004	0.67	0.0	0.06	16.16	0.00	2.186	14.68	2.36	6.0	94.0	0.0	-2.79	0.29	0.64	3.31	3.3	0.005	0.74	0.0	0.06	17.39	0.00	2.138	11.92	0.26	10.0	90.0	0.0	-3.49	1.44	0.31	0.69	3.96	3456	405	6	0	12	0	0	logfile

• ← previous
• Page 3 of 23
• next →