Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6U5H	20646	2022-05-12	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.014	1.48	1.0	0.05	15.62	0.01	2.118	24.19	0.00	15.4	84.6	0.0	-5.04	0.93	0.42	0.70	—	7326	954	3	0	0	0	0	logfile
✔	6L1U	0803	2022-05-13	2019-09-30	3.37	3.54	—	3.5	0.009	0.73	0.0	0.06	15.49	0.00	2.138	15.24	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.4	0.007	0.77	0.0	0.05	16.68	0.00	2.152	13.15	1.08	17.3	82.7	0.0	-5.04	1.97	0.48	0.85	2.84	10515	1500	15	0	0	0	0	logfile
✔	6FLT	4276	2022-05-12	2018-01-28	3.42	3.32	—	3.5	0.014	1.15	0.0	0.06	8.31	0.00	2.330	9.03	0.00	14.3	85.7	0.0	-5.36	0.44	0.74	2.91	3.5	0.005	0.67	0.0	0.05	10.57	0.00	2.300	12.13	0.00	20.7	79.3	0.0	-5.03	2.04	0.42	0.79	4.07	8060	580	10	0	0	0	4100	logfile
✔	7KXY	23067	2022-05-13	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.44	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.88	0.0	0.05	14.67	0.01	2.083	26.47	0.00	18.8	81.1	0.1	-4.97	0.60	0.64	0.62	—	9510	1181	2	0	0	0	0	logfile
✔	7VQQ	32092	2022-05-12	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.49	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.72	0.0	0.04	12.71	0.00	2.270	1.38	0.91	4.1	95.9	0.0	-4.95	0.28	0.48	0.87	4.50	1968	273	3	0	0	0	0	logfile
✔	6H3J	0134	2022-05-14	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.43	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.005	0.65	0.0	0.04	13.39	0.00	1.860	56.31	0.32	21.3	78.7	0.0	-4.95	2.68	0.78	0.86	2.86	20301	2511	3	0	0	0	212	logfile
✔	5o3T	3743	2022-05-13	2017-05-24	3.4	3.55	3.25	4.0	0.007	0.92	0.0	0.06	10.15	0.01	2.301	15.23	1.56	14.1	85.9	0.0	-6.47	0.53	0.63	2.13	3.5	0.003	0.64	0.0	0.05	12.81	0.00	2.146	10.56	0.16	10.4	89.6	0.0	-4.94	1.53	0.50	0.71	3.01	11360	730	10	0	0	0	5790	logfile
✔	6o9J	0661	2022-05-18	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	55.38	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.011	1.09	10.0	0.05	17.02	0.01	1.293	32.80	0.58	23.4	73.7	3.0	-4.89	1.14	0.79	0.75	0.36	142682	5731	53	4564	0	0	0	logfile
✔	6VW2	21410	2022-05-12	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.40	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	6Y1A	10669	2022-05-12	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.005	0.76	0.0	0.04	11.27	0.00	2.048	15.89	0.00	9.8	90.2	0.0	-4.83	1.55	0.57	0.76	—	2960	400	32	0	16	0	0	logfile
✔	6SST	10305	2022-05-12	2019-09-09	3.4	3.46	—	3.4	0.009	0.94	0.0	0.07	16.79	0.00	2.430	5.73	2.13	10.1	89.9	0.0	-4.47	0.56	0.80	6.33	3.4	0.005	0.69	0.0	0.05	15.22	0.00	2.342	10.76	0.21	14.6	85.4	0.0	-4.82	0.49	0.59	0.84	5.27	4900	730	10	0	0	0	0	logfile
✔	6VE2	21152	2022-05-16	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.007	1.24	0.0	0.05	10.04	0.01	2.049	33.59	0.00	21.9	77.6	0.6	-4.75	1.35	0.89	0.76	—	30198	6153	21	0	0	0	0	logfile
✔	6R4R	4727	2022-05-12	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.006	0.86	0.0	0.05	16.98	0.01	2.114	17.42	0.68	10.9	89.1	0.0	-4.75	3.88	0.31	0.68	3.78	4312	539	7	0	0	0	0	logfile
✔	5ZLU	6934	2022-05-22	2018-03-29	3.6	3.66	—	3.6	0.008	1.26	2.0	0.07	18.68	0.01	0.401	13.59	2.52	18.9	79.1	1.9	-5.90	0.78	0.77	1.74	3.6	0.007	1.01	2.0	0.05	18.91	0.01	1.656	14.56	0.23	20.5	78.7	0.9	-4.73	1.21	0.78	0.79	0.91	150313	6529	60	4596	4	0	0	logfile
✔	7L7H	23212	2022-05-12	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.005	0.99	0.0	0.06	16.55	0.00	2.113	18.49	1.96	32.1	67.9	0.0	-4.69	0.91	0.51	0.65	—	2430	352	8	0	0	0	0	logfile
✔	6DJP	7939	2022-05-12	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.009	1.27	0.0	0.05	9.47	0.01	2.140	24.14	0.00	24.7	74.7	0.6	-4.67	1.25	0.82	0.77	—	7307	1393	8	0	23	0	0	logfile
✔	3J2P	5499	2022-05-13	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	110.70	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.95	0.0	0.05	17.92	0.01	1.899	74.82	1.47	22.8	73.8	3.4	-4.64	0.91	0.39	0.73	1.07	9890	1134	6	0	6	0	1086	logfile
✔	6NYM	0546	2022-05-14	2019-02-11	3.6	4.42	—	4.1	0.005	0.94	0.0	0.06	10.43	0.00	2.260	8.29	0.32	12.6	87.4	0.0	-5.10	0.87	0.78	2.54	4.2	0.008	0.89	0.0	0.05	13.01	0.00	2.115	20.83	0.41	21.5	78.5	0.0	-4.64	1.21	0.87	0.79	2.54	68664	9000	12	0	0	0	0	logfile
✔	7M61	23686	2022-05-12	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	23.57	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.004	0.78	0.0	0.05	14.97	0.00	2.122	21.71	1.03	14.8	85.2	0.0	-4.62	0.86	0.47	0.75	2.83	1690	230	10	0	10	0	0	logfile
✔	6UUR	20900	2022-05-12	2019-10-31	3.5	3.51	—	3.6	0.004	0.76	0.0	0.05	15.65	0.00	2.644	8.15	0.00	5.3	94.7	0.0	-4.46	0.56	0.78	3.10	3.7	0.007	0.96	0.0	0.05	16.19	0.00	2.098	14.49	1.20	11.1	88.9	0.0	-4.61	2.23	0.52	0.79	3.03	2770	400	10	0	0	0	0	logfile

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