Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6P49	20247	2021-12-01	2019-05-26	3.3	3.60	3.10	3.6	0.007	1.50	0.0	0.08	16.18	0.01	2.164	18.16	3.28	6.9	92.4	0.7	-6.27	0.54	0.57	1.13	3.6	0.014	1.32	0.0	0.05	16.97	0.01	1.996	20.55	0.10	10.4	89.5	0.2	-4.38	1.70	0.55	0.59	1.05	9576	1166	4	0	2	0	0	logfile
✔	6RTB	4996	2021-12-01	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.006	0.85	0.0	0.05	16.16	0.00	2.105	17.65	0.65	22.1	77.9	0.0	-4.34	0.89	0.63	0.81	4.18	4681	699	10	0	0	0	0	logfile
✔	6VHA	21201	2021-12-01	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.004	0.75	0.0	0.05	13.16	0.00	2.339	14.02	0.00	9.8	90.2	0.0	-4.32	3.38	0.57	0.60	—	2439	321	3	0	0	0	0	logfile
✔	6ZD0	11172	2021-12-01	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	6VH7	21200	2021-12-01	2020-01-09	3.8	3.84	—	4.1	0.007	1.03	0.0	0.05	15.14	0.01	2.318	28.35	2.13	12.4	87.6	0.0	-4.78	0.54	0.62	2.62	4.0	0.004	0.82	0.0	0.05	16.62	0.00	2.299	12.42	0.00	10.5	89.5	0.0	-4.26	3.67	0.59	0.69	2.04	4878	642	6	0	0	0	0	logfile
✔	7MLZ	23914	2021-12-01	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.78	0.0	0.05	12.84	0.01	2.150	18.02	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.004	0.78	0.0	0.05	15.40	0.01	2.101	18.34	0.37	17.9	82.0	0.2	-4.24	0.52	0.82	0.65	1.02	4864	624	4	0	5	0	0	logfile
✔	7NSL	12570	2021-12-01	2021-03-08	3.1	3.25	2.92	3.2	0.012	1.84	0.0	0.08	14.48	0.01	2.367	4.69	0.00	3.7	96.3	0.0	-5.51	0.54	0.77	3.94	3.2	0.005	0.69	0.0	0.04	17.23	0.00	2.127	6.61	1.52	7.8	92.2	0.0	-4.18	0.96	0.57	0.82	3.07	8323	595	7	0	0	0	4053	logfile
✔	5Lii	4053	2021-12-01	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.004	0.96	0.0	0.04	16.43	0.01	2.170	13.66	1.77	16.2	83.1	0.7	-4.16	0.89	0.56	0.67	1.31	3098	433	1	0	0	0	0	logfile
✔	7P6E	13227	2021-12-01	2021-07-15	3.4	3.40	3.47	4.1	0.009	0.96	0.0	0.06	8.26	0.01	2.358	3.99	0.00	5.9	94.1	0.0	-4.80	0.54	0.79	4.38	4.1	0.005	0.73	0.0	0.05	13.23	0.00	2.222	10.99	0.32	7.1	92.9	0.0	-4.12	2.70	0.52	0.80	4.05	8090	1050	10	0	0	0	0	logfile
✔	5XLP	6731	2021-12-01	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.2	0.013	1.39	0.0	0.05	16.16	0.01	1.225	26.13	0.11	16.4	83.3	0.3	-4.10	2.32	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	6H6B	0148	2021-12-01	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.73	5.60	3.2	0.005	0.91	0.0	0.18	11.69	0.00	2.137	6.56	0.50	19.6	80.4	0.0	-4.04	1.83	0.41	0.78	3.27	8060	580	10	0	0	0	4100	logfile
✔	7M64	23688	2021-12-01	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.84	0.0	0.04	11.44	0.00	2.251	4.52	0.48	5.7	94.3	0.0	-4.01	1.14	0.51	0.73	—	1850	250	10	0	10	0	0	logfile
✔	6L1T	0801	2021-12-01	2019-09-30	3.22	3.42	—	3.4	0.010	0.74	0.0	0.06	14.17	0.00	2.296	12.89	0.00	12.6	87.4	0.0	-5.37	0.49	0.84	2.71	3.4	0.005	0.71	0.0	0.05	16.26	0.00	2.210	11.36	0.15	10.0	90.0	0.0	-4.00	1.41	0.49	0.86	3.55	7010	1000	10	0	0	0	0	logfile
✔	6WUN	21917	2021-12-01	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.83	0.0	0.04	14.96	0.00	2.101	13.17	0.09	17.2	82.6	0.2	-4.00	0.56	0.68	0.80	1.50	10082	1326	4	0	0	0	0	logfile
✔	6YW7	10960	2021-12-01	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.00	0.0	0.02	5.16	0.00	2.215	9.65	0.00	10.5	89.4	0.2	-3.99	6.44	0.84	0.64	—	5426	1788	9	0	2	0	0	logfile
✔	7BW7	30229	2021-12-01	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.07	0.00	23.4	76.6	0.0	-5.62	0.73	0.68	—	4.4	0.004	0.82	0.0	0.05	15.22	0.00	2.112	22.19	0.10	15.8	84.2	0.0	-3.98	0.72	0.71	0.65	—	8824	1091	3	0	0	0	0	logfile
✔	6LNi	0931	2021-12-01	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.67	0.0	0.05	19.40	0.00	2.265	11.19	1.23	11.0	89.0	0.0	-3.93	1.18	0.53	0.86	5.22	4920	600	10	0	0	0	0	logfile
✔	6TNG	10532	2021-12-01	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.02	0.0	0.00	7.42	0.01	2.133	21.25	0.00	25.4	74.3	0.3	-3.93	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	6TJo	10512	2021-12-01	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.20	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.006	0.88	0.0	0.05	13.23	0.00	2.284	10.02	0.35	11.1	88.9	0.0	-3.87	1.40	0.36	0.78	3.90	2439	321	3	0	0	0	0	logfile
✔	6oSJ	20183	2021-12-01	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.78	4.82	2.8	0.003	0.75	0.0	0.06	16.79	0.00	2.235	9.22	5.81	13.4	86.6	0.0	-3.82	0.47	0.52	0.79	4.30	4210	610	10	0	0	0	0	logfile

• ← previous
• Page 3 of 85
• next →