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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5o3L | 3741 | 2023-08-12 | 2017-05-24 | 3.4 | 3.71 | 3.34 | 3.7 | 0.012 | 1.03 | 0.0 | 0.06 | 8.97 | 0.01 | 2.111 | 9.60 | 0.00 | 22.4 | 77.6 | 0.0 | -6.67 | 0.60 | 0.69 | 2.44 | 3.6 | 0.004 | 0.78 | 0.0 | 0.05 | 15.54 | 0.01 | 1.937 | 16.37 | 0.78 | 13.9 | 86.1 | 0.0 | -5.24 | 2.68 | 0.57 | 0.75 | 2.67 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✔ | 7YR6 | 34047 | 2023-08-09 | 2022-08-09 | 4.8 | 5.13 | 4.65 | 4.7 | 0.004 | 0.88 | 0.0 | 0.05 | 20.67 | 0.00 | 2.291 | 7.11 | 3.30 | 15.1 | 84.9 | 0.0 | -5.39 | 0.81 | 0.74 | — | 4.7 | 0.006 | 0.85 | 0.0 | 0.05 | 21.69 | 0.01 | 2.063 | 46.62 | 0.00 | 26.4 | 73.6 | 0.0 | -5.22 | 0.82 | 0.83 | 0.81 | — | 4248 | 220 | 5 | 118 | 0 | 0 | 0 | logfile |
✔ | 7YPG | 33999 | 2023-08-09 | 2022-08-03 | 2.5 | 2.00 | 2.09 | 3.0 | 0.008 | 0.80 | 0.0 | 0.06 | 14.50 | 0.00 | 2.331 | 9.02 | 0.00 | 12.3 | 87.7 | 0.0 | -5.97 | 0.40 | 0.82 | 3.85 | 3.0 | 0.003 | 0.62 | 0.0 | 0.05 | 18.36 | 0.00 | 2.260 | 10.68 | 3.21 | 5.6 | 94.4 | 0.0 | -5.21 | 0.66 | 0.41 | 0.82 | 3.09 | 2676 | 354 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q65 | 13852 | 2023-08-09 | 2021-11-05 | 3.32 | 2.96 | 3.26 | 3.3 | 0.016 | 1.56 | 0.0 | 0.10 | 10.10 | 0.01 | 2.159 | 3.45 | 8.33 | 10.5 | 89.5 | 0.0 | -5.74 | 0.64 | 0.85 | 4.16 | 3.3 | 0.003 | 0.65 | 0.0 | 0.03 | 13.00 | 0.00 | 2.080 | 12.96 | 1.06 | 7.7 | 92.3 | 0.0 | -5.20 | 0.70 | 0.57 | 0.83 | 4.09 | 6204 | 880 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N3A | 9349 | 2023-08-09 | 2018-11-14 | 3.3 | 3.44 | — | 3.6 | 0.008 | 1.14 | 0.0 | 0.05 | 14.53 | 0.01 | 2.469 | 17.25 | 0.00 | 8.9 | 91.1 | 0.0 | -5.23 | 0.49 | 0.76 | 3.75 | 3.7 | 0.005 | 0.90 | 0.0 | 0.04 | 18.94 | 0.00 | 2.214 | 16.77 | 0.68 | 10.4 | 89.6 | 0.0 | -5.19 | 1.68 | 0.52 | 0.79 | 2.83 | 4310 | 600 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-08-15 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.005 | 0.87 | 0.0 | 0.04 | 19.17 | 0.01 | 1.949 | 36.81 | 0.45 | 21.6 | 77.1 | 1.3 | -5.19 | 1.94 | 0.80 | 0.66 | 0.50 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 6N3B | 9350 | 2023-08-09 | 2018-11-14 | 3.8 | 3.75 | — | 4.0 | 0.010 | 1.21 | 0.0 | 0.05 | 11.40 | 0.01 | 2.253 | 20.70 | 0.00 | 13.7 | 86.3 | 0.0 | -5.17 | 0.41 | 0.71 | 2.90 | 4.0 | 0.004 | 0.84 | 0.0 | 0.04 | 16.35 | 0.01 | 2.292 | 25.40 | 1.13 | 9.6 | 90.4 | 0.0 | -5.16 | 1.50 | 0.42 | 0.70 | 1.16 | 2735 | 385 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N37 | 9339 | 2023-08-09 | 2018-11-14 | 3.8 | 3.51 | — | 4.2 | 0.009 | 1.42 | 0.0 | 0.06 | 16.98 | 0.01 | 2.399 | 13.15 | 0.00 | 14.7 | 85.3 | 0.0 | -5.92 | 0.51 | 0.77 | 3.18 | 3.6 | 0.004 | 0.78 | 0.0 | 0.04 | 18.44 | 0.00 | 2.275 | 19.32 | 1.20 | 11.8 | 88.2 | 0.0 | -5.15 | 0.91 | 0.52 | 0.78 | 2.20 | 2580 | 360 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SSX | 10307 | 2023-08-09 | 2019-09-09 | 2.98 | 3.11 | — | 3.1 | 0.008 | 0.94 | 0.0 | 0.07 | 14.94 | 0.00 | 2.424 | 6.14 | 4.26 | 12.6 | 87.4 | 0.0 | -4.73 | 0.65 | 0.82 | 4.81 | 3.0 | 0.008 | 0.80 | 0.0 | 0.06 | 16.95 | 0.00 | 2.222 | 13.38 | 4.47 | 13.2 | 86.8 | 0.0 | -5.14 | 0.77 | 0.65 | 0.86 | 4.75 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oSM | 20186 | 2023-08-09 | 2019-05-01 | 3.4 | 3.31 | — | 3.4 | 0.012 | 1.45 | 0.0 | 0.09 | 14.06 | 0.00 | 2.183 | 28.91 | 14.88 | 34.5 | 65.5 | 0.0 | -5.34 | 0.46 | 0.74 | 2.68 | 3.4 | 0.007 | 1.25 | 0.0 | 0.07 | 15.44 | 0.00 | 2.184 | 23.54 | 1.46 | 28.1 | 71.9 | 0.0 | -5.14 | 3.39 | 0.44 | 0.75 | 3.23 | 4100 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZRR | 11383 | 2023-08-09 | 2020-07-14 | 4.0 | 4.04 | 3.78 | 4.3 | 0.015 | 1.45 | 0.0 | 0.06 | 13.08 | 0.00 | 2.189 | 28.46 | 0.00 | 5.0 | 95.0 | 0.0 | -4.56 | 0.62 | 0.69 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.05 | 14.26 | 0.00 | 2.107 | 29.56 | 0.00 | 16.9 | 83.1 | 0.0 | -5.10 | 2.48 | 0.65 | 0.74 | — | 5724 | 414 | 18 | 0 | 0 | 0 | 2664 | logfile |
✔ | 7YL7 | 33903 | 2023-08-09 | 2022-07-25 | 3.3 | 3.54 | 3.17 | 3.5 | 0.004 | 1.05 | 0.0 | 0.04 | 11.58 | 0.00 | 2.196 | 22.56 | 0.00 | 4.9 | 95.1 | 0.0 | -5.16 | 0.45 | 0.78 | 4.82 | 3.4 | 0.006 | 0.69 | 0.0 | 0.05 | 13.21 | 0.00 | 2.149 | 8.89 | 0.31 | 12.0 | 88.0 | 0.0 | -5.07 | 0.83 | 0.44 | 0.78 | 5.15 | 2988 | 402 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HUD | 0274 | 2023-08-09 | 2018-10-06 | 4.0 | 4.06 | — | 4.3 | 0.007 | 1.12 | 0.0 | 0.07 | 8.28 | 0.01 | 2.216 | 5.62 | 0.00 | 8.2 | 91.8 | 0.0 | -5.06 | 0.59 | 0.76 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 12.84 | 0.00 | 2.150 | 15.41 | 0.61 | 3.3 | 96.7 | 0.0 | -5.02 | 1.49 | 0.59 | 0.78 | — | 2905 | 385 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V48 | 31703 | 2023-08-09 | 2021-08-12 | 3.0 | 2.27 | — | 3.3 | 0.002 | 0.48 | 0.0 | 0.05 | 12.91 | 0.00 | 2.295 | 8.64 | 0.00 | 9.8 | 90.2 | 0.0 | -5.61 | 0.37 | 0.75 | 4.10 | 3.3 | 0.003 | 0.65 | 0.0 | 0.05 | 14.23 | 0.00 | 2.197 | 4.51 | 4.17 | 15.6 | 84.4 | 0.0 | -5.01 | 0.50 | 0.39 | 0.76 | 4.74 | 2598 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A7Q | 15224 | 2023-08-10 | 2022-06-21 | 2.8 | 3.63 | 2.72 | 3.4 | 0.004 | 0.67 | 0.0 | 0.05 | 11.64 | 0.00 | 2.197 | 7.83 | 0.00 | 3.2 | 96.8 | 0.0 | -5.05 | 0.45 | 0.75 | 5.43 | 3.4 | 0.005 | 1.12 | 0.0 | 0.05 | 15.74 | 0.00 | 2.145 | 19.36 | 3.42 | 11.0 | 89.0 | 0.0 | -5.00 | 4.62 | 0.41 | 0.76 | 3.48 | 6492 | 768 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5o3T | 3743 | 2023-08-12 | 2017-05-24 | 3.4 | 3.55 | 3.25 | 4.0 | 0.007 | 0.92 | 0.0 | 0.06 | 10.15 | 0.01 | 2.301 | 14.44 | 1.56 | 14.1 | 85.9 | 0.0 | -6.47 | 0.53 | 0.63 | 2.13 | 3.5 | 0.003 | 0.66 | 0.0 | 0.05 | 13.08 | 0.00 | 2.112 | 11.27 | 0.00 | 12.0 | 88.0 | 0.0 | -4.99 | 1.54 | 0.52 | 0.73 | 3.04 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✔ | 6L1U | 0803 | 2023-08-11 | 2019-09-30 | 3.37 | 3.54 | — | 3.5 | 0.011 | 0.90 | 0.0 | 0.06 | 15.32 | 0.00 | 2.138 | 15.24 | 0.00 | 15.8 | 84.2 | 0.0 | -6.06 | 0.47 | 0.83 | 2.58 | 3.5 | 0.007 | 0.76 | 0.0 | 0.05 | 16.50 | 0.00 | 2.159 | 13.05 | 1.18 | 17.0 | 83.0 | 0.0 | -4.98 | 1.98 | 0.48 | 0.85 | 2.64 | 10515 | 1500 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VQQ | 32092 | 2023-08-09 | 2021-10-20 | 2.9 | 2.61 | — | 3.1 | 0.009 | 0.85 | 0.0 | 0.05 | 11.51 | 0.01 | 2.233 | 2.50 | 0.00 | 12.4 | 87.6 | 0.0 | -6.09 | 0.47 | 0.86 | 4.62 | 3.1 | 0.006 | 0.80 | 0.0 | 0.04 | 12.91 | 0.00 | 2.234 | 2.21 | 0.91 | 5.6 | 94.4 | 0.0 | -4.97 | 0.28 | 0.48 | 0.87 | 4.95 | 1968 | 273 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SST | 10305 | 2023-08-09 | 2019-09-09 | 3.4 | 3.46 | — | 3.4 | 0.009 | 0.94 | 0.0 | 0.07 | 16.79 | 0.00 | 2.430 | 5.73 | 2.13 | 10.1 | 89.9 | 0.0 | -4.47 | 0.56 | 0.80 | 6.33 | 3.4 | 0.008 | 0.76 | 0.0 | 0.06 | 14.95 | 0.00 | 2.266 | 10.97 | 0.43 | 17.2 | 82.8 | 0.0 | -4.97 | 0.49 | 0.59 | 0.84 | 4.82 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UMQ | 26607 | 2023-08-09 | 2022-04-07 | 3.29 | 3.64 | 3.16 | 4.2 | 0.023 | 2.11 | 0.0 | 0.10 | 9.85 | 0.01 | 2.540 | 2.21 | 0.00 | 10.0 | 90.0 | 0.0 | -3.35 | 0.51 | 0.74 | 5.90 | 3.8 | 0.004 | 0.82 | 0.0 | 0.04 | 14.19 | 0.00 | 2.328 | 17.69 | 1.03 | 10.0 | 90.0 | 0.0 | -4.97 | 3.38 | 0.43 | 0.75 | 4.50 | 4380 | 620 | 10 | 0 | 0 | 0 | 0 | logfile |