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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NYM | 0546 | 2022-12-14 | 2019-02-11 | 3.6 | 4.42 | — | 4.1 | 0.005 | 0.94 | 0.0 | 0.06 | 10.43 | 0.00 | 2.260 | 8.29 | 0.32 | 12.6 | 87.4 | 0.0 | -5.10 | 0.87 | 0.78 | 2.54 | 4.2 | 0.008 | 0.89 | 0.0 | 0.05 | 13.01 | 0.00 | 2.115 | 20.83 | 0.41 | 21.5 | 78.5 | 0.0 | -4.64 | 1.21 | 0.87 | 0.79 | 2.54 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M61 | 23686 | 2022-12-11 | 2021-03-25 | 3.8 | 3.83 | — | 4.1 | 0.005 | 1.01 | 0.0 | 0.08 | 12.79 | 0.00 | 2.218 | 23.57 | 0.00 | 14.3 | 85.7 | 0.0 | -4.63 | 0.49 | 0.73 | 2.45 | 3.9 | 0.004 | 0.78 | 0.0 | 0.05 | 14.97 | 0.00 | 2.122 | 21.71 | 1.03 | 14.8 | 85.2 | 0.0 | -4.62 | 0.86 | 0.47 | 0.75 | 2.83 | 1690 | 230 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6UUR | 20900 | 2022-12-11 | 2019-10-31 | 3.5 | 3.51 | — | 3.6 | 0.004 | 0.76 | 0.0 | 0.05 | 15.65 | 0.00 | 2.644 | 8.15 | 0.00 | 5.3 | 94.7 | 0.0 | -4.46 | 0.56 | 0.78 | 3.10 | 3.7 | 0.007 | 0.96 | 0.0 | 0.05 | 16.19 | 0.00 | 2.098 | 14.49 | 1.20 | 11.1 | 88.9 | 0.0 | -4.61 | 2.23 | 0.52 | 0.79 | 3.03 | 2770 | 400 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CU7 | 7618 | 2022-12-11 | 2018-03-23 | 3.5 | 3.63 | — | 4.3 | 0.007 | 0.99 | 0.0 | 0.07 | 9.61 | 0.00 | 2.346 | 4.58 | 2.38 | 15.5 | 84.5 | 0.0 | -4.74 | 0.38 | 0.72 | 2.52 | 4.3 | 0.004 | 0.67 | 0.0 | 0.05 | 14.08 | 0.00 | 2.215 | 17.37 | 0.71 | 13.1 | 86.9 | 0.0 | -4.59 | 1.76 | 0.38 | 0.72 | 1.68 | 4140 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C1D | 30269 | 2022-12-11 | 2020-05-03 | 3.8 | 4.18 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.99 | 0.00 | 2.367 | 18.87 | 0.00 | 20.4 | 79.6 | 0.0 | -6.46 | 0.34 | 0.74 | 3.47 | 6.5 | 0.004 | 0.69 | 0.0 | 0.05 | 14.90 | 0.00 | 2.239 | 18.63 | 0.52 | 24.5 | 75.5 | 0.0 | -4.57 | 2.82 | 0.39 | 0.75 | 2.42 | 2034 | 306 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M62 | 23687 | 2022-12-11 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.007 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.3 | 0.003 | 0.99 | 0.0 | 0.05 | 15.87 | 0.00 | 2.105 | 21.17 | 0.00 | 22.7 | 77.3 | 0.0 | -4.56 | 2.11 | 0.57 | 0.65 | 3.17 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6NYL | 0545 | 2022-12-14 | 2019-02-11 | 3.7 | 4.50 | — | 4.1 | 0.008 | 1.14 | 0.0 | 0.06 | 11.10 | 0.01 | 2.233 | 10.38 | 0.97 | 16.1 | 83.9 | 0.0 | -5.60 | 0.87 | 0.74 | 2.26 | 4.1 | 0.003 | 0.69 | 0.0 | 0.05 | 12.68 | 0.00 | 2.131 | 19.60 | 0.23 | 13.4 | 86.6 | 0.0 | -4.54 | 0.52 | 0.87 | 0.73 | 1.71 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N9Q | 24259 | 2022-12-11 | 2021-06-18 | 4.6 | 4.92 | — | 2.3 | 0.002 | 0.88 | 0.0 | 0.00 | 5.65 | 0.00 | 2.600 | 0.00 | 0.00 | 8.9 | 90.3 | 0.8 | -1.59 | 0.79 | 0.69 | — | 2.5 | 0.003 | 1.01 | 0.0 | 0.00 | 5.01 | 0.00 | 2.577 | 6.97 | 0.00 | 13.1 | 86.1 | 0.9 | -4.51 | 2.40 | 0.85 | 0.81 | — | 6945 | 2315 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XLP | 6731 | 2022-12-12 | 2017-05-11 | 4.2 | 4.23 | — | 4.2 | 0.009 | 1.36 | 0.0 | 0.06 | 14.75 | 0.01 | 2.194 | 12.48 | 0.57 | 18.2 | 81.4 | 0.5 | -5.53 | 0.62 | 0.58 | — | 4.1 | 0.006 | 1.10 | 0.0 | 0.05 | 16.12 | 0.01 | 1.922 | 30.30 | 0.11 | 21.0 | 78.6 | 0.4 | -4.50 | 1.97 | 0.67 | 0.66 | — | 9952 | 1343 | 6 | 24 | 0 | 0 | 0 | logfile |
✔ | 6H3i | 0133 | 2022-12-14 | 2018-07-18 | 3.5 | 3.59 | — | 3.5 | 0.009 | 0.92 | 0.0 | 0.05 | 10.08 | 0.01 | 2.012 | 39.59 | 0.40 | 21.4 | 78.4 | 0.2 | -5.64 | 0.78 | 0.86 | 4.47 | 3.5 | 0.007 | 0.71 | 0.0 | 0.04 | 13.40 | 0.00 | 1.972 | 52.60 | 0.27 | 22.1 | 77.8 | 0.1 | -4.48 | 2.52 | 0.78 | 0.87 | 3.41 | 20599 | 2597 | 3 | 0 | 0 | 0 | 53 | logfile |
✔ | 6NYJ | 0544 | 2022-12-14 | 2019-02-11 | 3.2 | 3.93 | — | 3.8 | 0.008 | 1.06 | 0.0 | 0.06 | 10.60 | 0.01 | 2.247 | 7.25 | 0.54 | 15.2 | 84.8 | 0.0 | -5.28 | 0.82 | 0.77 | 3.30 | 3.8 | 0.006 | 0.80 | 0.0 | 0.05 | 12.83 | 0.00 | 2.210 | 14.89 | 0.23 | 18.8 | 81.2 | 0.0 | -4.47 | 0.58 | 0.84 | 0.80 | 3.03 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U5H | 20646 | 2022-12-11 | 2019-08-27 | 4.0 | 3.67 | — | 3.7 | 0.005 | 1.07 | 0.0 | 0.06 | 8.74 | 0.01 | 2.234 | 9.36 | 0.39 | 13.6 | 86.4 | 0.0 | -5.23 | 0.41 | 0.68 | — | 3.7 | 0.003 | 0.78 | 0.0 | 0.05 | 15.28 | 0.00 | 2.121 | 17.29 | 0.39 | 11.6 | 88.4 | 0.0 | -4.45 | 0.98 | 0.41 | 0.69 | — | 7326 | 954 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WQK | 21871 | 2022-12-11 | 2020-04-29 | 3.1 | 3.26 | — | 3.3 | 0.003 | 0.70 | 0.0 | 0.04 | 14.47 | 0.00 | 2.272 | 4.54 | 0.00 | 1.8 | 98.2 | 0.0 | -5.40 | 0.48 | 0.84 | 4.99 | 3.3 | 0.004 | 0.72 | 0.0 | 0.05 | 13.47 | 0.00 | 2.242 | 4.54 | 0.00 | 4.4 | 95.6 | 0.0 | -4.42 | 0.47 | 0.45 | 0.85 | 5.39 | 2070 | 285 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DSo | 8910 | 2022-12-11 | 2018-06-14 | 3.0 | 3.30 | 2.98 | 3.4 | 0.009 | 0.94 | 0.0 | 0.06 | 7.35 | 0.00 | 2.431 | 1.53 | 0.00 | 3.2 | 96.8 | 0.0 | -4.46 | 0.49 | 0.81 | 6.10 | 3.3 | 0.006 | 0.73 | 0.0 | 0.05 | 15.53 | 0.00 | 2.156 | 11.82 | 0.69 | 9.5 | 90.5 | 0.0 | -4.38 | 1.55 | 0.50 | 0.83 | 5.18 | 6588 | 828 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z7Q | 11112 | 2022-12-13 | 2020-06-01 | 3.8 | 4.10 | 3.58 | 4.0 | 0.006 | 0.77 | 0.0 | 0.05 | 14.47 | 0.00 | 2.176 | 21.13 | 0.00 | 28.6 | 70.7 | 0.7 | -6.49 | 0.73 | 0.82 | 1.75 | 4.0 | 0.005 | 0.90 | 0.0 | 0.05 | 16.79 | 0.00 | 2.164 | 20.65 | 0.80 | 17.3 | 82.7 | 0.0 | -4.36 | 1.19 | 0.75 | 0.83 | 1.11 | 16665 | 2080 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RTB | 4996 | 2022-12-11 | 2019-05-22 | 3.46 | 3.57 | — | 3.5 | 0.009 | 1.23 | 0.0 | 0.07 | 15.08 | 0.01 | 2.122 | 6.27 | 2.61 | 18.9 | 80.9 | 0.2 | -4.64 | 0.62 | 0.79 | 4.22 | 3.5 | 0.006 | 0.85 | 0.0 | 0.05 | 16.16 | 0.00 | 2.105 | 17.65 | 0.65 | 22.1 | 77.9 | 0.0 | -4.34 | 0.89 | 0.62 | 0.80 | 4.18 | 4681 | 699 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYN | 0547 | 2022-12-14 | 2019-02-11 | 3.5 | 4.40 | — | 4.1 | 0.006 | 1.01 | 0.0 | 0.06 | 10.55 | 0.01 | 2.259 | 7.62 | 0.97 | 16.7 | 83.3 | 0.0 | -5.19 | 0.87 | 0.77 | 2.69 | 4.1 | 0.003 | 0.66 | 0.0 | 0.05 | 12.68 | 0.00 | 2.168 | 14.57 | 0.26 | 11.7 | 88.3 | 0.0 | -4.34 | 1.18 | 0.87 | 0.77 | 2.41 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZD0 | 11172 | 2022-12-11 | 2020-06-13 | 4.6 | 4.62 | 2.80 | 3.7 | 0.004 | 0.91 | 0.0 | 0.05 | 7.55 | 0.00 | 2.207 | 10.05 | 0.00 | 10.1 | 89.8 | 0.1 | -4.73 | 0.59 | 0.58 | — | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 5.33 | 0.00 | 2.199 | 10.22 | 0.00 | 19.5 | 80.1 | 0.4 | -4.32 | 2.53 | 0.59 | 0.57 | — | 7962 | 1611 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BW7 | 30229 | 2022-12-12 | 2020-04-13 | 4.1 | 4.55 | 4.28 | 4.4 | 0.008 | 1.06 | 0.0 | 0.06 | 16.20 | 0.01 | 2.050 | 40.19 | 0.00 | 23.4 | 76.6 | 0.0 | -5.62 | 0.73 | 0.67 | — | 4.4 | 0.006 | 0.92 | 0.0 | 0.05 | 15.37 | 0.01 | 2.082 | 28.44 | 0.00 | 18.6 | 81.3 | 0.1 | -4.32 | 0.71 | 0.72 | 0.67 | — | 8824 | 1091 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VHA | 21201 | 2022-12-11 | 2020-01-09 | 4.3 | 4.35 | — | 7.8 | 0.007 | 1.02 | 0.0 | 0.05 | 15.14 | 0.01 | 2.319 | 26.84 | 2.13 | 12.4 | 87.6 | 0.0 | -4.78 | 0.55 | 0.54 | — | 4.1 | 0.004 | 0.75 | 0.0 | 0.05 | 13.16 | 0.00 | 2.339 | 14.02 | 0.00 | 9.8 | 90.2 | 0.0 | -4.32 | 3.38 | 0.57 | 0.60 | — | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |