Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NYM	0546	2022-12-14	2019-02-11	3.6	4.42	—	4.1	0.005	0.94	0.0	0.06	10.43	0.00	2.260	8.29	0.32	12.6	87.4	0.0	-5.10	0.87	0.78	2.54	4.2	0.008	0.89	0.0	0.05	13.01	0.00	2.115	20.83	0.41	21.5	78.5	0.0	-4.64	1.21	0.87	0.79	2.54	68664	9000	12	0	0	0	0	logfile
✔	7M61	23686	2022-12-11	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	23.57	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.004	0.78	0.0	0.05	14.97	0.00	2.122	21.71	1.03	14.8	85.2	0.0	-4.62	0.86	0.47	0.75	2.83	1690	230	10	0	10	0	0	logfile
✔	6UUR	20900	2022-12-11	2019-10-31	3.5	3.51	—	3.6	0.004	0.76	0.0	0.05	15.65	0.00	2.644	8.15	0.00	5.3	94.7	0.0	-4.46	0.56	0.78	3.10	3.7	0.007	0.96	0.0	0.05	16.19	0.00	2.098	14.49	1.20	11.1	88.9	0.0	-4.61	2.23	0.52	0.79	3.03	2770	400	10	0	0	0	0	logfile
✔	6CU7	7618	2022-12-11	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.004	0.67	0.0	0.05	14.08	0.00	2.215	17.37	0.71	13.1	86.9	0.0	-4.59	1.76	0.38	0.72	1.68	4140	600	10	0	0	0	0	logfile
✔	7C1D	30269	2022-12-11	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.90	0.00	2.239	18.63	0.52	24.5	75.5	0.0	-4.57	2.82	0.39	0.75	2.42	2034	306	6	0	0	0	0	logfile
✔	7M62	23687	2022-12-11	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile
✔	6NYL	0545	2022-12-14	2019-02-11	3.7	4.50	—	4.1	0.008	1.14	0.0	0.06	11.10	0.01	2.233	10.38	0.97	16.1	83.9	0.0	-5.60	0.87	0.74	2.26	4.1	0.003	0.69	0.0	0.05	12.68	0.00	2.131	19.60	0.23	13.4	86.6	0.0	-4.54	0.52	0.87	0.73	1.71	68664	9000	12	0	0	0	0	logfile
✔	7N9Q	24259	2022-12-11	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.01	0.0	0.00	5.01	0.00	2.577	6.97	0.00	13.1	86.1	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	5XLP	6731	2022-12-12	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.1	0.006	1.10	0.0	0.05	16.12	0.01	1.922	30.30	0.11	21.0	78.6	0.4	-4.50	1.97	0.67	0.66	—	9952	1343	6	24	0	0	0	logfile
✔	6H3i	0133	2022-12-14	2018-07-18	3.5	3.59	—	3.5	0.009	0.92	0.0	0.05	10.08	0.01	2.012	39.59	0.40	21.4	78.4	0.2	-5.64	0.78	0.86	4.47	3.5	0.007	0.71	0.0	0.04	13.40	0.00	1.972	52.60	0.27	22.1	77.8	0.1	-4.48	2.52	0.78	0.87	3.41	20599	2597	3	0	0	0	53	logfile
✔	6NYJ	0544	2022-12-14	2019-02-11	3.2	3.93	—	3.8	0.008	1.06	0.0	0.06	10.60	0.01	2.247	7.25	0.54	15.2	84.8	0.0	-5.28	0.82	0.77	3.30	3.8	0.006	0.80	0.0	0.05	12.83	0.00	2.210	14.89	0.23	18.8	81.2	0.0	-4.47	0.58	0.84	0.80	3.03	68664	9000	12	0	0	0	0	logfile
✔	6U5H	20646	2022-12-11	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.003	0.78	0.0	0.05	15.28	0.00	2.121	17.29	0.39	11.6	88.4	0.0	-4.45	0.98	0.41	0.69	—	7326	954	3	0	0	0	0	logfile
✔	6WQK	21871	2022-12-11	2020-04-29	3.1	3.26	—	3.3	0.003	0.70	0.0	0.04	14.47	0.00	2.272	4.54	0.00	1.8	98.2	0.0	-5.40	0.48	0.84	4.99	3.3	0.004	0.72	0.0	0.05	13.47	0.00	2.242	4.54	0.00	4.4	95.6	0.0	-4.42	0.47	0.45	0.85	5.39	2070	285	5	0	0	0	0	logfile
✔	6DSo	8910	2022-12-11	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.3	0.006	0.73	0.0	0.05	15.53	0.00	2.156	11.82	0.69	9.5	90.5	0.0	-4.38	1.55	0.50	0.83	5.18	6588	828	12	0	0	0	0	logfile
✔	6Z7Q	11112	2022-12-13	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	21.13	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.005	0.90	0.0	0.05	16.79	0.00	2.164	20.65	0.80	17.3	82.7	0.0	-4.36	1.19	0.75	0.83	1.11	16665	2080	5	0	0	0	0	logfile
✔	6RTB	4996	2022-12-11	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.006	0.85	0.0	0.05	16.16	0.00	2.105	17.65	0.65	22.1	77.9	0.0	-4.34	0.89	0.62	0.80	4.18	4681	699	10	0	0	0	0	logfile
✔	6NYN	0547	2022-12-14	2019-02-11	3.5	4.40	—	4.1	0.006	1.01	0.0	0.06	10.55	0.01	2.259	7.62	0.97	16.7	83.3	0.0	-5.19	0.87	0.77	2.69	4.1	0.003	0.66	0.0	0.05	12.68	0.00	2.168	14.57	0.26	11.7	88.3	0.0	-4.34	1.18	0.87	0.77	2.41	68664	9000	12	0	0	0	0	logfile
✔	6ZD0	11172	2022-12-11	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.3	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✔	7BW7	30229	2022-12-12	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.19	0.00	23.4	76.6	0.0	-5.62	0.73	0.67	—	4.4	0.006	0.92	0.0	0.05	15.37	0.01	2.082	28.44	0.00	18.6	81.3	0.1	-4.32	0.71	0.72	0.67	—	8824	1091	3	0	0	0	0	logfile
✔	6VHA	21201	2022-12-11	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.004	0.75	0.0	0.05	13.16	0.00	2.339	14.02	0.00	9.8	90.2	0.0	-4.32	3.38	0.57	0.60	—	2439	321	3	0	0	0	0	logfile

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