Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VPS	21316	2021-12-01	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	3.89	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.88	6.47	2736	279	9	0	0	0	0	logfile
✔	6RT0	4994	2021-12-01	2019-05-22	3.1	3.18	—	3.1	0.006	0.97	0.0	0.06	14.23	0.00	2.415	2.11	1.06	11.5	88.5	0.0	-3.76	0.71	0.84	6.51	3.1	0.004	0.68	0.0	0.05	16.18	0.00	2.246	4.31	0.00	10.1	89.9	0.0	-3.78	0.83	0.74	0.86	5.75	4925	735	10	0	0	0	0	logfile
✔	6N3C	0334	2021-12-01	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.003	0.68	0.0	0.04	15.70	0.00	2.372	12.69	1.58	8.2	91.8	0.0	-3.77	2.40	0.52	0.83	3.93	4260	640	20	0	0	0	0	logfile
✔	7FG3	31577	2021-12-01	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.23	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.009	0.98	0.0	0.05	16.79	0.01	2.094	23.98	0.30	15.7	83.7	0.6	-3.71	0.78	0.23	0.45	0.29	9054	1166	2	0	0	0	0	logfile
✘	6VHL	21207	2021-12-01	2020-01-10	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-6.30	—	—	3.54	3.7	0.004	0.78	0.0	0.04	16.88	0.01	2.268	9.54	0.00	11.3	88.7	0.0	-3.65	—	0.28	0.69	3.54	1190	158	4	0	0	0	0	logfile
✔	6L4S	0833	2021-12-01	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.34	0.74	2.16	2268	330	6	0	0	0	0	logfile
✔	6JNF	9851	2021-12-01	2019-03-14	3.81	3.96	3.73	4.0	0.009	1.23	0.0	0.06	17.14	0.01	2.304	5.10	1.02	16.7	83.3	0.0	-6.16	0.64	0.82	1.38	4.0	0.019	1.84	1.0	0.05	18.38	0.01	1.975	18.89	0.77	12.6	87.4	0.0	-3.61	0.65	0.67	0.82	1.34	7271	924	11	0	1	0	0	logfile
✔	7LC9	23270	2021-12-01	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.009	0.92	0.0	0.05	16.86	0.00	1.984	46.70	2.65	14.8	85.2	0.0	-3.60	0.67	0.70	0.81	0.10	3497	525	12	0	0	0	0	logfile
✔	7PHG	13415	2021-12-01	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.003	0.65	0.0	0.04	13.66	0.00	1.966	17.62	0.00	10.7	89.3	0.0	-3.58	1.26	0.77	0.66	—	6469	427	3	0	0	0	3160	logfile
✔	6BX3	7303	2021-12-02	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.003	0.86	0.0	0.05	13.15	0.00	2.112	20.93	0.00	17.0	82.9	0.1	-3.58	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	7DHR	30682	2021-12-01	2020-11-17	3.8	3.96	—	3.9	0.004	0.86	0.0	0.05	14.18	0.01	2.329	3.85	0.31	9.1	90.8	0.1	-6.33	0.70	0.77	3.13	3.9	0.003	0.63	0.0	0.04	15.40	0.00	2.217	10.28	0.62	8.0	92.0	0.0	-3.58	0.42	0.70	0.77	2.17	7057	977	5	0	1	0	0	logfile
✔	7CAH	30331	2021-12-01	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.76	0.0	0.05	14.99	0.01	2.233	15.81	0.74	12.6	87.4	0.0	-3.53	0.55	0.69	0.64	2.17	2889	404	3	0	0	0	0	logfile
✔	6VXi	21438	2021-12-01	2020-02-21	3.7	3.67	—	3.7	0.008	1.00	0.0	0.06	16.00	0.00	2.281	6.73	2.07	9.5	90.3	0.2	-6.00	0.61	0.79	2.72	3.7	0.012	1.27	1.0	0.04	16.90	0.00	2.099	19.35	0.41	7.4	92.3	0.3	-3.51	0.52	0.61	0.80	2.85	8898	1132	4	0	3	0	0	logfile
✔	6MST	9232	2021-12-01	2018-10-18	2.7	2.92	1.72	2.8	0.006	0.85	0.0	0.05	7.68	0.00	2.294	1.43	0.00	1.9	98.1	0.0	-4.58	0.73	0.90	7.42	2.9	0.003	0.51	0.0	0.04	15.52	0.00	2.221	6.65	0.22	2.2	97.8	0.0	-3.50	1.60	0.67	0.90	6.90	5172	648	12	0	0	0	0	logfile
✔	6HRE	0259	2021-12-01	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.01	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	2.8	0.007	0.94	0.0	0.05	17.28	0.00	2.123	9.22	0.50	9.3	90.7	0.0	-3.49	0.81	0.30	0.78	3.87	3522	462	6	0	0	0	0	logfile
✔	6Z1o	11031	2021-12-01	2020-05-14	3.2	3.40	2.66	3.4	0.013	2.23	0.0	0.13	13.75	0.01	2.354	5.42	0.00	8.2	91.8	0.0	-4.26	0.60	0.76	2.88	3.4	0.003	0.65	0.0	0.04	17.18	0.00	2.063	8.51	1.17	6.3	93.7	0.0	-3.48	2.03	0.64	0.81	2.62	7758	534	6	0	0	0	3786	logfile
✔	7E0F	30931	2021-12-01	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.06	0.00	2.487	5.37	0.00	9.2	90.8	0.0	-3.48	0.60	0.39	0.80	3.91	2022	294	6	0	0	0	0	logfile
✔	6LR0	0956	2021-12-01	2020-01-15	3.5	2.83	—	3.5	0.009	1.28	0.0	0.07	13.02	0.01	2.228	5.41	1.27	11.1	88.8	0.1	-6.63	0.49	0.72	1.90	2.8	0.005	0.86	1.0	0.04	16.59	0.01	2.184	10.40	0.19	7.4	92.6	0.0	-3.47	1.38	0.48	0.72	1.38	9587	1232	1	0	0	0	0	logfile
✔	6QJP	4565	2021-12-01	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	6Z1i	11030	2021-12-01	2020-05-13	3.4	3.49	—	3.4	0.013	2.26	0.0	0.12	14.23	0.01	2.356	7.00	0.00	8.7	91.3	0.0	-4.29	0.58	0.73	3.59	3.4	0.003	0.67	0.0	0.05	17.55	0.00	2.088	10.22	0.51	10.8	89.2	0.0	-3.47	1.67	0.64	0.81	2.28	7140	486	6	0	0	0	3492	logfile

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