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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oKS | 20103 | 2022-05-13 | 2019-04-15 | 4.2 | 4.44 | — | 4.3 | 0.008 | 1.15 | 0.0 | 0.05 | 17.36 | 0.01 | 2.299 | 5.88 | 9.80 | 18.3 | 81.7 | 0.0 | -5.50 | 0.78 | 0.81 | — | 4.3 | 0.009 | 1.10 | 0.0 | 0.05 | 14.65 | 0.01 | 2.124 | 15.44 | 0.00 | 19.1 | 80.9 | 0.0 | -4.60 | 2.23 | 0.79 | 0.82 | — | 13244 | 1610 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XLo | 6729 | 2022-05-13 | 2017-05-11 | 3.8 | 3.91 | — | 3.9 | 0.009 | 1.37 | 0.0 | 0.06 | 14.03 | 0.01 | 2.050 | 13.55 | 0.29 | 17.3 | 81.9 | 0.8 | -6.02 | 0.58 | 0.64 | 0.55 | 3.9 | 0.020 | 1.71 | 3.0 | 0.05 | 17.89 | 0.01 | 1.755 | 29.86 | 0.07 | 17.2 | 82.3 | 0.5 | -4.60 | 0.83 | 0.61 | 0.67 | 0.81 | 15413 | 2073 | 9 | 38 | 0 | 0 | 0 | logfile |
✔ | 6CU7 | 7618 | 2022-05-12 | 2018-03-23 | 3.5 | 3.63 | — | 4.3 | 0.007 | 0.99 | 0.0 | 0.07 | 9.61 | 0.00 | 2.346 | 4.58 | 2.38 | 15.5 | 84.5 | 0.0 | -4.74 | 0.38 | 0.72 | 2.52 | 4.3 | 0.004 | 0.67 | 0.0 | 0.05 | 14.08 | 0.00 | 2.215 | 17.37 | 0.71 | 13.1 | 86.9 | 0.0 | -4.59 | 1.76 | 0.38 | 0.72 | 1.68 | 4140 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C1D | 30269 | 2022-05-12 | 2020-05-03 | 3.8 | 4.18 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.99 | 0.00 | 2.367 | 18.87 | 0.00 | 20.4 | 79.6 | 0.0 | -6.46 | 0.34 | 0.74 | 3.47 | 6.5 | 0.004 | 0.69 | 0.0 | 0.05 | 14.90 | 0.00 | 2.239 | 18.63 | 0.52 | 24.5 | 75.5 | 0.0 | -4.57 | 2.82 | 0.39 | 0.75 | 2.42 | 2034 | 306 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M62 | 23687 | 2022-05-12 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.007 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.3 | 0.003 | 0.99 | 0.0 | 0.05 | 15.87 | 0.00 | 2.105 | 21.17 | 0.00 | 22.7 | 77.3 | 0.0 | -4.56 | 2.11 | 0.57 | 0.65 | 3.17 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6NYL | 0545 | 2022-05-14 | 2019-02-11 | 3.7 | 4.50 | — | 4.1 | 0.008 | 1.14 | 0.0 | 0.06 | 11.10 | 0.01 | 2.233 | 10.38 | 0.97 | 16.1 | 83.9 | 0.0 | -5.60 | 0.87 | 0.74 | 2.26 | 4.1 | 0.003 | 0.69 | 0.0 | 0.05 | 12.68 | 0.00 | 2.131 | 19.60 | 0.23 | 13.4 | 86.6 | 0.0 | -4.54 | 0.52 | 0.87 | 0.73 | 1.71 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VXJ | 21440 | 2022-05-12 | 2020-02-22 | 4.1 | 4.12 | — | 4.1 | 0.031 | 1.40 | 0.0 | 0.06 | 16.31 | 0.01 | 2.251 | 6.79 | 3.32 | 9.5 | 90.5 | 0.0 | -5.74 | 0.57 | 0.78 | — | 4.1 | 0.006 | 1.08 | 0.0 | 0.05 | 13.95 | 0.01 | 1.186 | 26.38 | 0.10 | 9.9 | 90.1 | 0.0 | -4.53 | 0.58 | 0.57 | 0.78 | — | 8895 | 1132 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7N9Q | 24259 | 2022-05-12 | 2021-06-18 | 4.6 | 4.92 | — | 2.3 | 0.002 | 0.88 | 0.0 | 0.00 | 5.65 | 0.00 | 2.600 | 0.00 | 0.00 | 8.9 | 90.3 | 0.8 | -1.59 | 0.79 | 0.69 | — | 2.5 | 0.003 | 1.01 | 0.0 | 0.00 | 5.01 | 0.00 | 2.577 | 6.97 | 0.00 | 13.1 | 86.1 | 0.9 | -4.51 | 2.40 | 0.85 | 0.81 | — | 6945 | 2315 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2022-05-13 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 88.10 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.007 | 1.33 | 0.0 | 0.05 | 16.09 | 0.01 | 1.037 | 31.44 | 0.00 | 20.2 | 75.6 | 4.2 | -4.47 | 1.32 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYJ | 0544 | 2022-05-14 | 2019-02-11 | 3.2 | 3.93 | — | 3.8 | 0.008 | 1.06 | 0.0 | 0.06 | 10.60 | 0.01 | 2.247 | 7.25 | 0.54 | 15.2 | 84.8 | 0.0 | -5.28 | 0.82 | 0.77 | 3.30 | 3.8 | 0.006 | 0.80 | 0.0 | 0.05 | 12.83 | 0.00 | 2.210 | 14.89 | 0.23 | 18.8 | 81.2 | 0.0 | -4.47 | 0.58 | 0.82 | 0.78 | 3.03 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A9Z | 6396 | 2022-05-22 | 2015-07-23 | 4.7 | 4.83 | — | 4.7 | 0.013 | 1.89 | 26.0 | 0.14 | 23.31 | 0.03 | 0.000 | 199.55 | 29.15 | 25.1 | 49.6 | 25.2 | -7.73 | 0.81 | 0.65 | — | 4.7 | 0.007 | 1.03 | 0.0 | 0.05 | 19.42 | 0.01 | 0.000 | 40.53 | 0.19 | 21.0 | 76.7 | 2.4 | -4.44 | 2.93 | 0.87 | 0.82 | — | 150547 | 6671 | 58 | 4527 | 131 | 0 | 0 | logfile |
✔ | 6WQK | 21871 | 2022-05-12 | 2020-04-29 | 3.1 | 3.26 | — | 3.3 | 0.003 | 0.70 | 0.0 | 0.04 | 14.47 | 0.00 | 2.272 | 4.54 | 0.00 | 1.8 | 98.2 | 0.0 | -5.40 | 0.48 | 0.84 | 4.99 | 3.3 | 0.004 | 0.72 | 0.0 | 0.05 | 13.47 | 0.00 | 2.242 | 4.54 | 0.00 | 4.4 | 95.6 | 0.0 | -4.42 | 0.47 | 0.47 | 0.86 | 5.39 | 2070 | 285 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H3i | 0133 | 2022-05-14 | 2018-07-18 | 3.5 | 3.59 | — | 3.5 | 0.009 | 0.92 | 0.0 | 0.05 | 10.08 | 0.01 | 2.012 | 39.59 | 0.40 | 21.4 | 78.4 | 0.2 | -5.64 | 0.78 | 0.86 | 4.47 | 3.5 | 0.010 | 0.93 | 1.0 | 0.04 | 13.26 | 0.00 | 2.010 | 52.82 | 0.00 | 21.1 | 78.8 | 0.1 | -4.42 | 2.52 | 0.78 | 0.87 | 3.45 | 20599 | 2597 | 3 | 0 | 0 | 0 | 53 | logfile |
✔ | 5G2X | 3331 | 2022-05-14 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.31 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.004 | 0.76 | 0.0 | 0.04 | 17.15 | 0.01 | 1.994 | 28.48 | 0.45 | 18.5 | 80.5 | 1.1 | -4.42 | 1.71 | 0.79 | 0.64 | 0.68 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 6DSo | 8910 | 2022-05-12 | 2018-06-14 | 3.0 | 3.30 | 2.98 | 3.4 | 0.009 | 0.94 | 0.0 | 0.06 | 7.35 | 0.00 | 2.431 | 1.53 | 0.00 | 3.2 | 96.8 | 0.0 | -4.46 | 0.49 | 0.81 | 6.10 | 3.3 | 0.006 | 0.73 | 0.0 | 0.05 | 15.53 | 0.00 | 2.156 | 11.82 | 0.69 | 9.5 | 90.5 | 0.0 | -4.38 | 1.55 | 0.50 | 0.83 | 5.18 | 6588 | 828 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P49 | 20247 | 2022-05-13 | 2019-05-26 | 3.3 | 3.60 | 3.10 | 3.6 | 0.007 | 1.50 | 0.0 | 0.08 | 16.18 | 0.01 | 2.164 | 18.26 | 3.28 | 6.9 | 92.4 | 0.7 | -6.27 | 0.54 | 0.57 | 1.13 | 3.6 | 0.014 | 1.32 | 0.0 | 0.05 | 16.97 | 0.01 | 1.996 | 20.71 | 0.10 | 10.4 | 89.5 | 0.2 | -4.38 | 1.70 | 0.55 | 0.60 | 1.05 | 9576 | 1166 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6NYN | 0547 | 2022-05-14 | 2019-02-11 | 3.5 | 4.40 | — | 4.1 | 0.006 | 1.01 | 0.0 | 0.06 | 10.55 | 0.01 | 2.259 | 7.62 | 0.97 | 16.7 | 83.3 | 0.0 | -5.19 | 0.87 | 0.77 | 2.69 | 4.1 | 0.003 | 0.66 | 0.0 | 0.05 | 12.68 | 0.00 | 2.168 | 14.57 | 0.26 | 11.7 | 88.3 | 0.0 | -4.34 | 1.18 | 0.87 | 0.77 | 2.41 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RTB | 4996 | 2022-05-12 | 2019-05-22 | 3.46 | 3.57 | — | 3.5 | 0.009 | 1.23 | 0.0 | 0.07 | 15.08 | 0.01 | 2.122 | 6.27 | 2.61 | 18.9 | 80.9 | 0.2 | -4.64 | 0.62 | 0.79 | 4.22 | 3.5 | 0.006 | 0.85 | 0.0 | 0.05 | 16.16 | 0.00 | 2.105 | 17.65 | 0.65 | 22.1 | 77.9 | 0.0 | -4.34 | 0.89 | 0.63 | 0.81 | 4.18 | 4681 | 699 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZD0 | 11172 | 2022-05-12 | 2020-06-13 | 4.6 | 4.62 | 2.80 | 3.7 | 0.004 | 0.91 | 0.0 | 0.05 | 7.55 | 0.00 | 2.207 | 10.05 | 0.00 | 10.1 | 89.8 | 0.1 | -4.73 | 0.59 | 0.58 | — | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 5.33 | 0.00 | 2.199 | 10.22 | 0.00 | 19.5 | 80.1 | 0.4 | -4.32 | 2.53 | 0.59 | 0.57 | — | 7962 | 1611 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VHA | 21201 | 2022-05-12 | 2020-01-09 | 4.3 | 4.35 | — | 7.8 | 0.007 | 1.02 | 0.0 | 0.05 | 15.14 | 0.01 | 2.319 | 26.84 | 2.13 | 12.4 | 87.6 | 0.0 | -4.78 | 0.55 | 0.54 | — | 4.1 | 0.004 | 0.75 | 0.0 | 0.05 | 13.16 | 0.00 | 2.339 | 14.02 | 0.00 | 9.8 | 90.2 | 0.0 | -4.32 | 3.38 | 0.57 | 0.60 | — | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |