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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7FBi | 31515 | 2023-04-20 | 2021-07-10 | 3.9 | 4.51 | — | 4.4 | 0.007 | 1.18 | 3.0 | 0.07 | 15.51 | 0.01 | 2.095 | 10.67 | 0.35 | 14.6 | 85.3 | 0.1 | -5.16 | 0.40 | 0.79 | 1.90 | 4.4 | 0.005 | 0.86 | 0.0 | 0.05 | 16.65 | 0.00 | 2.125 | 18.48 | 0.81 | 14.3 | 85.7 | 0.0 | -3.69 | 0.65 | 0.41 | 0.79 | 1.98 | 7777 | 1005 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2023-04-21 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.29 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 16.64 | 0.01 | 2.088 | 24.71 | 0.10 | 15.3 | 84.1 | 0.5 | -3.68 | 0.78 | 0.23 | 0.45 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JMF | 22392 | 2023-04-24 | 2020-07-31 | 4.5 | 5.06 | — | 4.7 | 0.005 | 0.98 | 0.0 | 0.05 | 10.23 | 0.01 | 1.373 | 8.08 | 0.36 | 11.2 | 88.6 | 0.2 | -4.91 | 0.54 | 0.27 | — | 7.7 | 0.004 | 0.94 | 0.0 | 0.05 | 11.59 | 0.01 | 1.145 | 21.14 | 0.00 | 11.3 | 88.5 | 0.2 | -3.66 | 1.53 | 0.76 | 0.56 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 6oRo | 20176 | 2023-04-25 | 2019-04-30 | 3.9 | 4.21 | 3.87 | 4.2 | 0.009 | 1.32 | 3.0 | 0.09 | 11.96 | 0.01 | 2.048 | 4.78 | 2.93 | 13.1 | 86.4 | 0.6 | -5.30 | 0.62 | 0.84 | 2.16 | 4.2 | 0.005 | 0.88 | 0.0 | 0.05 | 15.52 | 0.00 | 2.194 | 11.28 | 1.15 | 14.6 | 85.3 | 0.2 | -3.65 | 0.63 | 0.62 | 0.85 | 2.09 | 20085 | 2415 | 45 | 0 | 96 | 0 | 0 | logfile |
✔ | 7KVF | 23049 | 2023-04-22 | 2020-11-28 | 3.6 | 4.39 | 3.76 | 3.6 | 0.005 | 0.82 | 2.0 | 0.05 | 14.67 | 0.00 | 2.204 | 17.32 | 0.57 | 18.2 | 81.4 | 0.4 | -5.88 | 0.82 | 0.66 | 1.37 | 3.6 | 0.004 | 0.81 | 0.0 | 0.04 | 16.18 | 0.01 | 2.117 | 22.47 | 0.41 | 14.1 | 85.9 | 0.0 | -3.65 | 2.38 | 0.87 | 0.76 | 0.72 | 11142 | 1374 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WRQ | 32735 | 2023-04-20 | 2022-01-27 | 3.6 | 4.08 | 3.17 | 3.8 | 0.011 | 1.29 | 1.0 | 0.08 | 14.58 | 0.02 | 2.357 | 1.04 | 1.06 | 19.9 | 79.6 | 0.5 | -5.87 | 0.86 | 0.85 | 2.08 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 15.57 | 0.00 | 2.263 | 4.98 | 0.15 | 10.5 | 89.4 | 0.1 | -3.65 | 0.62 | 0.87 | 0.86 | 2.29 | 6247 | 798 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 7Wi6 | 32526 | 2023-04-21 | 2022-01-03 | 3.71 | 4.33 | — | 4.2 | 0.009 | 1.02 | 0.0 | 0.06 | 14.55 | 0.01 | 2.290 | 5.63 | 1.54 | 14.5 | 85.5 | 0.0 | -6.21 | 0.76 | 0.78 | 1.96 | 4.2 | 0.002 | 0.59 | 0.0 | 0.04 | 14.89 | 0.00 | 2.210 | 6.86 | 0.00 | 8.3 | 91.7 | 0.0 | -3.62 | 1.50 | 0.77 | 0.78 | 2.02 | 9696 | 1446 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6VFE | 21160 | 2023-04-22 | 2020-01-03 | 3.9 | 4.13 | — | 4.0 | 0.003 | 0.75 | 0.0 | 0.05 | 15.07 | 0.00 | 2.120 | 12.81 | 0.03 | 8.3 | 91.7 | 0.0 | -3.02 | 0.83 | 0.74 | 1.40 | 4.0 | 0.004 | 0.77 | 0.0 | 0.05 | 17.17 | 0.00 | 2.062 | 15.40 | 0.58 | 12.0 | 88.0 | 0.0 | -3.62 | 0.57 | 0.84 | 0.76 | 1.18 | 61908 | 7887 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WUN | 21917 | 2023-04-21 | 2020-05-04 | 3.9 | 4.00 | — | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 13.70 | 0.00 | 2.166 | 14.26 | 1.14 | 18.4 | 81.6 | 0.0 | -6.35 | 0.68 | 0.80 | 1.75 | 3.9 | 0.005 | 0.78 | 0.0 | 0.04 | 14.77 | 0.00 | 2.028 | 12.03 | 0.38 | 16.1 | 83.8 | 0.1 | -3.62 | 0.57 | 0.68 | 0.80 | 1.47 | 10082 | 1326 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XiZ | 33213 | 2023-04-19 | 2022-04-14 | 3.74 | 3.27 | 3.81 | 3.1 | 0.013 | 1.11 | 0.0 | 0.06 | 17.48 | 0.01 | 2.386 | 4.94 | 0.00 | 12.8 | 86.4 | 0.8 | -3.37 | 0.35 | 0.71 | 1.78 | 3.1 | 0.004 | 0.81 | 0.0 | 0.05 | 17.83 | 0.01 | 2.218 | 16.22 | 1.70 | 16.6 | 82.6 | 0.8 | -3.61 | 1.54 | 0.37 | 0.74 | 1.40 | 2161 | 267 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6ND4 | 0441 | 2023-04-22 | 2018-12-13 | 4.3 | 4.41 | — | 4.2 | 0.010 | 1.03 | 0.0 | 0.06 | 14.55 | 0.02 | 2.230 | 5.19 | 0.00 | 6.4 | 93.6 | 0.1 | -3.63 | 0.80 | 0.66 | — | 4.2 | 0.007 | 1.08 | 0.0 | 0.05 | 15.04 | 0.01 | 1.926 | 19.87 | 0.00 | 17.6 | 82.3 | 0.1 | -3.59 | 1.14 | 0.85 | 0.77 | — | 63993 | 9225 | 30 | 551 | 1306 | 0 | 0 | logfile |
✔ | 6oRQ | 20178 | 2023-04-25 | 2019-04-30 | 4.4 | 4.71 | 4.38 | 4.5 | 0.008 | 1.31 | 0.0 | 0.08 | 12.61 | 0.01 | 2.039 | 6.79 | 1.04 | 16.3 | 83.4 | 0.3 | -4.97 | 0.65 | 0.83 | — | 4.5 | 0.003 | 0.89 | 0.0 | 0.05 | 12.93 | 0.00 | 2.145 | 16.63 | 0.24 | 16.0 | 83.9 | 0.1 | -3.57 | 1.60 | 0.65 | 0.83 | — | 20176 | 2430 | 40 | 0 | 83 | 0 | 0 | logfile |
✔ | 7WB5 | 32395 | 2023-04-19 | 2021-12-15 | 3.7 | 3.89 | — | 3.9 | 0.011 | 1.41 | 0.0 | 0.09 | 18.47 | 0.02 | 2.188 | 18.30 | 14.00 | 18.2 | 79.6 | 2.2 | -4.90 | 0.61 | 0.78 | 2.04 | 3.9 | 0.004 | 0.83 | 0.0 | 0.04 | 16.86 | 0.01 | 2.186 | 16.09 | 0.00 | 10.4 | 89.6 | 0.0 | -3.57 | 1.62 | 0.61 | 0.77 | 2.22 | 3256 | 408 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7FEQ | 31560 | 2023-04-25 | 2021-07-21 | 3.2 | 3.55 | — | 3.6 | 0.010 | 1.20 | 0.0 | 0.07 | 14.49 | 0.01 | 2.172 | 1.94 | 0.19 | 12.9 | 86.6 | 0.6 | -6.13 | 0.47 | 0.75 | 3.40 | 3.6 | 0.004 | 0.71 | 0.0 | 0.05 | 16.44 | 0.00 | 2.187 | 3.94 | 0.15 | 11.0 | 88.8 | 0.2 | -3.56 | 1.02 | 0.68 | 0.88 | 2.64 | 19236 | 2520 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PHG | 13415 | 2023-04-20 | 2021-08-17 | 4.3 | 4.13 | — | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 13.71 | 0.00 | 1.916 | 18.40 | 0.00 | 11.9 | 88.1 | 0.0 | -3.68 | 0.78 | 0.67 | — | 4.0 | 0.004 | 0.66 | 0.0 | 0.04 | 13.37 | 0.00 | 1.921 | 20.25 | 0.00 | 11.6 | 88.4 | 0.0 | -3.54 | 1.28 | 0.78 | 0.67 | — | 6469 | 427 | 3 | 0 | 0 | 0 | 3160 | logfile |
✔ | 7JMN | 22397 | 2023-04-22 | 2020-08-02 | 3.58 | 3.99 | — | 3.8 | 0.004 | 0.83 | 0.0 | 0.05 | 14.64 | 0.01 | 2.115 | 11.08 | 0.07 | 19.3 | 80.2 | 0.6 | -5.81 | 0.79 | 0.78 | 1.61 | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 16.33 | 0.00 | 2.188 | 10.25 | 0.21 | 15.5 | 84.2 | 0.3 | -3.53 | 1.24 | 0.78 | 0.77 | 1.31 | 13633 | 1756 | 5 | 0 | 52 | 0 | 0 | logfile |
✔ | 7JMi | 22395 | 2023-04-24 | 2020-07-31 | 4.5 | 6.62 | — | 4.3 | 0.004 | 0.92 | 0.0 | 0.05 | 10.07 | 0.01 | 1.373 | 7.47 | 0.31 | 10.5 | 89.3 | 0.2 | -4.79 | 0.58 | 0.34 | — | 4.2 | 0.003 | 0.89 | 0.0 | 0.05 | 11.88 | 0.01 | 2.082 | 18.52 | 0.00 | 11.8 | 88.0 | 0.2 | -3.52 | 0.83 | 0.81 | 0.69 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7ASo | 11902 | 2023-04-25 | 2020-10-27 | 3.11 | 3.89 | — | 3.0 | 0.007 | 1.05 | 3.0 | 0.10 | 22.66 | 0.00 | 1.837 | 24.01 | 13.50 | 22.1 | 76.1 | 1.9 | -5.91 | 0.58 | 0.45 | 0.91 | 3.0 | 0.007 | 0.76 | 0.0 | 0.04 | 20.66 | 0.00 | 1.997 | 20.14 | 1.06 | 13.0 | 86.9 | 0.1 | -3.51 | 1.41 | 0.87 | 0.86 | 1.38 | 125530 | 4741 | 47 | 4249 | 0 | 0 | 0 | logfile |
✔ | 6oRP | 20177 | 2023-04-25 | 2019-04-30 | 4.4 | 4.68 | 4.45 | 4.7 | 0.010 | 1.62 | 7.0 | 0.10 | 13.28 | 0.02 | 1.539 | 13.72 | 1.05 | 15.8 | 83.7 | 0.4 | -4.88 | 0.46 | 0.61 | — | 4.7 | 0.004 | 0.94 | 0.0 | 0.05 | 13.98 | 0.00 | 2.100 | 16.59 | 0.10 | 14.1 | 85.8 | 0.1 | -3.50 | 0.92 | 0.60 | 0.81 | — | 19972 | 2397 | 47 | 0 | 98 | 0 | 0 | logfile |
✔ | 7ASK | 11895 | 2023-04-22 | 2020-10-27 | 4.3 | 4.39 | — | 4.3 | 0.028 | 2.99 | 47.0 | 0.22 | 18.83 | 0.02 | 0.766 | 14.21 | 2.58 | 16.8 | 73.5 | 9.7 | -6.06 | 0.17 | 0.51 | — | 4.3 | 0.015 | 1.14 | 2.0 | 0.05 | 15.52 | 0.01 | 1.979 | 19.61 | 0.00 | 18.6 | 79.9 | 1.4 | -3.48 | 1.34 | 0.19 | 0.61 | — | 12285 | 1523 | 1 | 0 | 2 | 0 | 0 | logfile |