Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FBi	31515	2023-04-20	2021-07-10	3.9	4.51	—	4.4	0.007	1.18	3.0	0.07	15.51	0.01	2.095	10.67	0.35	14.6	85.3	0.1	-5.16	0.40	0.79	1.90	4.4	0.005	0.86	0.0	0.05	16.65	0.00	2.125	18.48	0.81	14.3	85.7	0.0	-3.69	0.65	0.41	0.79	1.98	7777	1005	5	0	0	0	0	logfile
✔	7FG3	31577	2023-04-21	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✔	7JMF	22392	2023-04-24	2020-07-31	4.5	5.06	—	4.7	0.005	0.98	0.0	0.05	10.23	0.01	1.373	8.08	0.36	11.2	88.6	0.2	-4.91	0.54	0.27	—	7.7	0.004	0.94	0.0	0.05	11.59	0.01	1.145	21.14	0.00	11.3	88.5	0.2	-3.66	1.53	0.76	0.56	—	120756	13500	12	0	3608	0	0	logfile
✔	6oRo	20176	2023-04-25	2019-04-30	3.9	4.21	3.87	4.2	0.009	1.32	3.0	0.09	11.96	0.01	2.048	4.78	2.93	13.1	86.4	0.6	-5.30	0.62	0.84	2.16	4.2	0.005	0.88	0.0	0.05	15.52	0.00	2.194	11.28	1.15	14.6	85.3	0.2	-3.65	0.63	0.62	0.85	2.09	20085	2415	45	0	96	0	0	logfile
✔	7KVF	23049	2023-04-22	2020-11-28	3.6	4.39	3.76	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.82	0.66	1.37	3.6	0.004	0.81	0.0	0.04	16.18	0.01	2.117	22.47	0.41	14.1	85.9	0.0	-3.65	2.38	0.87	0.76	0.72	11142	1374	1	0	0	0	0	logfile
✔	7WRQ	32735	2023-04-20	2022-01-27	3.6	4.08	3.17	3.8	0.011	1.29	1.0	0.08	14.58	0.02	2.357	1.04	1.06	19.9	79.6	0.5	-5.87	0.86	0.85	2.08	3.8	0.003	0.70	0.0	0.04	15.57	0.00	2.263	4.98	0.15	10.5	89.4	0.1	-3.65	0.62	0.87	0.86	2.29	6247	798	5	0	7	0	0	logfile
✔	7Wi6	32526	2023-04-21	2022-01-03	3.71	4.33	—	4.2	0.009	1.02	0.0	0.06	14.55	0.01	2.290	5.63	1.54	14.5	85.5	0.0	-6.21	0.76	0.78	1.96	4.2	0.002	0.59	0.0	0.04	14.89	0.00	2.210	6.86	0.00	8.3	91.7	0.0	-3.62	1.50	0.77	0.78	2.02	9696	1446	4	0	4	0	0	logfile
✔	6VFE	21160	2023-04-22	2020-01-03	3.9	4.13	—	4.0	0.003	0.75	0.0	0.05	15.07	0.00	2.120	12.81	0.03	8.3	91.7	0.0	-3.02	0.83	0.74	1.40	4.0	0.004	0.77	0.0	0.05	17.17	0.00	2.062	15.40	0.58	12.0	88.0	0.0	-3.62	0.57	0.84	0.76	1.18	61908	7887	33	0	0	0	0	logfile
✔	6WUN	21917	2023-04-21	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.78	0.0	0.04	14.77	0.00	2.028	12.03	0.38	16.1	83.8	0.1	-3.62	0.57	0.68	0.80	1.47	10082	1326	4	0	0	0	0	logfile
✔	7XiZ	33213	2023-04-19	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	17.48	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.81	0.0	0.05	17.83	0.01	2.218	16.22	1.70	16.6	82.6	0.8	-3.61	1.54	0.37	0.74	1.40	2161	267	1	0	2	0	0	logfile
✔	6ND4	0441	2023-04-22	2018-12-13	4.3	4.41	—	4.2	0.010	1.03	0.0	0.06	14.55	0.02	2.230	5.19	0.00	6.4	93.6	0.1	-3.63	0.80	0.66	—	4.2	0.007	1.08	0.0	0.05	15.04	0.01	1.926	19.87	0.00	17.6	82.3	0.1	-3.59	1.14	0.85	0.77	—	63993	9225	30	551	1306	0	0	logfile
✔	6oRQ	20178	2023-04-25	2019-04-30	4.4	4.71	4.38	4.5	0.008	1.31	0.0	0.08	12.61	0.01	2.039	6.79	1.04	16.3	83.4	0.3	-4.97	0.65	0.83	—	4.5	0.003	0.89	0.0	0.05	12.93	0.00	2.145	16.63	0.24	16.0	83.9	0.1	-3.57	1.60	0.65	0.83	—	20176	2430	40	0	83	0	0	logfile
✔	7WB5	32395	2023-04-19	2021-12-15	3.7	3.89	—	3.9	0.011	1.41	0.0	0.09	18.47	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.9	0.004	0.83	0.0	0.04	16.86	0.01	2.186	16.09	0.00	10.4	89.6	0.0	-3.57	1.62	0.61	0.77	2.22	3256	408	4	0	3	0	0	logfile
✔	7FEQ	31560	2023-04-25	2021-07-21	3.2	3.55	—	3.6	0.010	1.20	0.0	0.07	14.49	0.01	2.172	1.94	0.19	12.9	86.6	0.6	-6.13	0.47	0.75	3.40	3.6	0.004	0.71	0.0	0.05	16.44	0.00	2.187	3.94	0.15	11.0	88.8	0.2	-3.56	1.02	0.68	0.88	2.64	19236	2520	14	0	0	0	0	logfile
✔	7PHG	13415	2023-04-20	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.004	0.66	0.0	0.04	13.37	0.00	1.921	20.25	0.00	11.6	88.4	0.0	-3.54	1.28	0.78	0.67	—	6469	427	3	0	0	0	3160	logfile
✔	7JMN	22397	2023-04-22	2020-08-02	3.58	3.99	—	3.8	0.004	0.83	0.0	0.05	14.64	0.01	2.115	11.08	0.07	19.3	80.2	0.6	-5.81	0.79	0.78	1.61	3.8	0.003	0.84	0.0	0.04	16.33	0.00	2.188	10.25	0.21	15.5	84.2	0.3	-3.53	1.24	0.78	0.77	1.31	13633	1756	5	0	52	0	0	logfile
✔	7JMi	22395	2023-04-24	2020-07-31	4.5	6.62	—	4.3	0.004	0.92	0.0	0.05	10.07	0.01	1.373	7.47	0.31	10.5	89.3	0.2	-4.79	0.58	0.34	—	4.2	0.003	0.89	0.0	0.05	11.88	0.01	2.082	18.52	0.00	11.8	88.0	0.2	-3.52	0.83	0.81	0.69	—	120756	13500	12	0	3608	0	0	logfile
✔	7ASo	11902	2023-04-25	2020-10-27	3.11	3.89	—	3.0	0.007	1.05	3.0	0.10	22.66	0.00	1.837	24.01	13.50	22.1	76.1	1.9	-5.91	0.58	0.45	0.91	3.0	0.007	0.76	0.0	0.04	20.66	0.00	1.997	20.14	1.06	13.0	86.9	0.1	-3.51	1.41	0.87	0.86	1.38	125530	4741	47	4249	0	0	0	logfile
✔	6oRP	20177	2023-04-25	2019-04-30	4.4	4.68	4.45	4.7	0.010	1.62	7.0	0.10	13.28	0.02	1.539	13.72	1.05	15.8	83.7	0.4	-4.88	0.46	0.61	—	4.7	0.004	0.94	0.0	0.05	13.98	0.00	2.100	16.59	0.10	14.1	85.8	0.1	-3.50	0.92	0.60	0.81	—	19972	2397	47	0	98	0	0	logfile
✔	7ASK	11895	2023-04-22	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.21	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.015	1.14	2.0	0.05	15.52	0.01	1.979	19.61	0.00	18.6	79.9	1.4	-3.48	1.34	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile

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