Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GS4	34220	2023-04-20	2022-09-04	3.5	3.66	3.52	3.7	0.004	0.83	0.0	0.05	13.58	0.01	2.251	11.71	0.00	13.3	86.7	0.0	-4.70	0.69	0.75	2.42	3.7	0.003	0.77	0.0	0.04	15.61	0.01	2.148	10.85	0.23	11.3	88.7	0.0	-3.30	0.39	0.67	0.75	1.27	8250	1050	2	0	0	0	0	logfile
✔	7BZY	30263	2023-04-20	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.82	0.0	0.05	6.08	0.00	2.106	13.54	0.00	14.3	85.7	0.0	-3.30	1.23	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	7PAG	13269	2023-04-20	2021-07-29	4.0	4.22	—	4.1	0.005	0.75	0.0	0.05	13.86	0.01	2.177	12.66	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.004	1.05	0.0	0.05	16.63	0.00	2.144	20.38	0.23	10.5	89.5	0.0	-3.28	1.36	0.34	0.68	—	4040	509	1	0	4	0	0	logfile
✔	7N95	24250	2023-04-20	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✔	6HDD	0204	2023-04-28	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✔	7TKG	25968	2023-04-25	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.3	0.007	1.14	0.0	0.00	7.61	0.01	2.015	33.28	0.00	19.7	80.0	0.3	-3.26	2.09	0.77	0.80	—	20228	5056	27	0	0	0	0	logfile
✔	6UM1	20815	2023-04-24	2019-10-08	3.46	3.57	—	3.5	0.014	1.83	7.0	0.09	15.07	0.01	2.014	9.77	0.84	6.9	92.9	0.2	-4.82	0.69	0.70	2.32	3.5	0.005	0.81	0.0	0.05	16.18	0.01	2.052	17.90	0.68	12.3	87.6	0.1	-3.26	0.61	0.73	0.77	2.02	17134	2208	4	0	8	0	0	logfile
✔	6L31	0816	2023-04-25	2019-10-07	4.18	4.92	—	4.8	0.007	1.26	7.0	0.07	16.23	0.01	1.738	16.77	2.27	11.7	88.0	0.3	-4.45	0.38	0.72	—	4.9	0.005	0.86	0.0	0.05	14.12	0.01	1.950	28.23	0.04	12.5	87.4	0.1	-3.26	2.40	0.38	0.72	—	20905	2670	6	0	0	0	0	logfile
✔	6B40	7046	2023-04-23	2017-09-25	4.3	4.48	—	4.4	0.007	1.13	0.0	0.06	16.61	0.01	2.269	8.08	0.00	18.8	81.0	0.2	-5.22	0.76	0.70	—	4.4	0.003	0.79	0.0	0.04	17.69	0.01	2.079	18.20	0.00	16.2	83.8	0.0	-3.25	2.12	0.80	0.77	—	16202	1800	12	100	42	0	0	logfile
✔	5WRG	6679	2023-04-23	2016-12-01	4.3	4.45	—	4.3	0.007	1.40	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.004	1.00	0.0	0.05	12.31	0.00	2.019	20.07	0.00	18.0	81.8	0.1	-3.25	1.52	0.68	0.76	—	16317	2208	3	0	0	0	0	logfile
✔	5ZAL	6905	2023-04-22	2018-02-07	4.7	4.44	—	3.8	0.008	1.44	1.0	0.07	12.67	0.01	2.215	19.06	0.97	16.1	83.2	0.7	-5.19	0.87	0.74	—	3.8	0.005	0.95	0.0	0.05	13.33	0.01	2.089	38.66	0.00	16.3	83.5	0.2	-3.24	1.62	0.84	0.60	—	12346	1389	3	58	0	0	0	logfile
✔	7E3C	30979	2023-04-19	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.84	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.004	0.75	0.0	0.05	13.96	0.00	2.140	14.75	0.00	12.6	87.4	0.0	-3.24	1.57	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✔	6LYP	30017	2023-04-23	2020-02-15	3.3	3.12	3.20	3.5	0.011	1.35	0.0	0.08	11.79	0.01	2.148	8.25	1.40	9.8	90.2	0.0	-6.19	0.50	0.70	2.83	3.5	0.005	0.78	0.0	0.05	14.72	0.00	2.225	12.51	0.43	9.8	90.2	0.0	-3.23	1.21	0.54	0.74	2.12	15169	2009	7	0	0	0	0	logfile
✔	7X1T	32949	2023-04-20	2022-02-24	3.26	3.46	—	3.5	0.007	0.98	3.0	0.22	13.90	0.01	1.351	5.09	0.92	8.9	91.0	0.1	-5.73	0.60	0.70	1.68	3.5	0.003	0.68	0.0	0.05	15.09	0.00	2.132	10.04	0.46	6.9	93.1	0.0	-3.23	0.44	0.61	0.71	1.88	7488	1082	6	0	1	0	0	logfile
✔	7JSE	22451	2023-04-22	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.9	0.007	1.10	0.0	0.09	14.86	0.00	2.156	11.87	0.00	20.1	79.9	0.0	-3.21	2.77	0.87	0.64	—	13288	3168	24	32	0	0	0	logfile
✔	8DRQ	27681	2023-04-20	2022-07-21	4.16	4.28	4.60	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.003	0.81	0.0	0.05	13.41	0.00	2.156	19.67	0.00	8.1	91.9	0.0	-3.21	1.78	0.41	0.56	—	3321	407	1	0	0	0	0	logfile
✔	8F7J	28905	2023-04-20	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.004	0.80	0.0	0.04	13.92	0.01	2.122	24.96	0.00	9.4	90.6	0.0	-3.21	2.94	0.44	0.45	—	3321	407	1	0	0	0	0	logfile
✔	6CS1	7579	2023-04-27	2018-03-19	4.6	4.79	4.84	6.8	0.006	0.92	0.0	0.06	8.77	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.007	1.10	1.0	0.06	11.78	0.01	1.900	35.89	0.00	11.7	88.3	0.0	-3.21	1.93	0.71	0.58	—	25995	3202	27	0	75	0	0	logfile
✔	7DHR	30682	2023-04-20	2020-11-17	3.8	3.96	—	3.9	0.004	0.86	0.0	0.05	14.18	0.01	2.329	3.92	0.31	9.1	90.8	0.1	-6.33	0.70	0.77	3.13	3.9	0.002	0.61	0.0	0.04	15.36	0.00	2.231	7.99	0.77	5.7	94.3	0.0	-3.21	0.46	0.69	0.76	1.86	7057	977	5	0	1	0	0	logfile
✔	7SWN	25476	2023-04-20	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.003	0.82	0.0	0.05	13.82	0.01	2.261	21.52	0.00	11.3	88.7	0.0	-3.20	2.08	0.57	0.68	—	3283	422	3	0	0	0	0	logfile

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