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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7V4C | 31707 | 2023-08-09 | 2021-08-12 | 3.3 | 2.93 | — | 3.4 | 0.008 | 0.75 | 0.0 | 0.06 | 12.47 | 0.00 | 2.305 | 12.50 | 0.00 | 20.0 | 80.0 | 0.0 | -6.54 | 0.40 | 0.83 | 2.37 | 3.4 | 0.002 | 0.61 | 0.0 | 0.05 | 17.20 | 0.00 | 2.152 | 4.55 | 1.52 | 6.1 | 93.9 | 0.0 | -4.30 | 2.19 | 0.40 | 0.82 | 3.23 | 1287 | 186 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VZF | 32227 | 2023-08-09 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.45 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.005 | 0.93 | 0.0 | 0.05 | 18.70 | 0.00 | 2.192 | 14.23 | 5.32 | 20.2 | 79.8 | 0.0 | -4.30 | 1.92 | 0.37 | 0.63 | -0.01 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NCi | 12267 | 2023-08-12 | 2021-01-28 | 3.55 | 3.67 | 3.44 | 4.0 | 0.012 | 1.57 | 2.0 | 0.10 | 15.57 | 0.01 | 2.481 | 0.35 | 0.00 | 8.9 | 91.1 | 0.0 | -3.74 | 0.68 | 0.59 | 1.81 | 4.0 | 0.004 | 0.64 | 2.0 | 0.05 | 14.88 | 0.00 | 1.935 | 18.73 | 1.48 | 13.7 | 86.3 | 0.0 | -4.29 | 1.57 | 0.67 | 0.62 | 0.22 | 11292 | 816 | 12 | 0 | 0 | 0 | 5796 | logfile |
✔ | 6DSo | 8910 | 2023-08-10 | 2018-06-14 | 3.0 | 3.30 | 2.98 | 3.4 | 0.009 | 0.94 | 0.0 | 0.06 | 7.35 | 0.00 | 2.431 | 1.53 | 0.00 | 3.2 | 96.8 | 0.0 | -4.46 | 0.49 | 0.81 | 6.10 | 3.3 | 0.004 | 0.69 | 0.0 | 0.04 | 15.62 | 0.00 | 2.146 | 10.22 | 0.35 | 8.8 | 91.2 | 0.0 | -4.29 | 1.56 | 0.50 | 0.82 | 4.96 | 6588 | 828 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCD | 6549 | 2023-08-31 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 14.69 | 0.00 | 1.289 | 14.63 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.005 | 1.16 | 0.0 | 0.06 | 20.49 | 0.01 | 1.400 | 48.65 | 0.88 | 15.2 | 83.4 | 1.3 | -4.28 | 2.51 | 0.71 | 0.42 | 0.16 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 3J2P | 5499 | 2023-08-11 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.010 | 1.92 | 0.0 | 0.12 | 17.56 | 0.02 | 2.155 | 110.32 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.003 | 0.89 | 0.0 | 0.04 | 17.84 | 0.00 | 1.911 | 69.53 | 1.47 | 18.7 | 77.9 | 3.4 | -4.26 | 0.93 | 0.38 | 0.72 | 0.85 | 9890 | 1134 | 8 | 0 | 6 | 0 | 1086 | logfile |
✔ | 3LoS | 5137 | 2023-08-12 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.16 | 0.0 | 0.05 | 15.91 | 0.01 | 2.171 | 27.07 | 0.03 | 20.2 | 75.7 | 4.1 | -4.25 | 1.37 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N9Y | 24264 | 2023-08-10 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.81 | 0.00 | 2.550 | 7.73 | 0.00 | 18.2 | 81.3 | 0.5 | -4.24 | 2.61 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SP1 | 25364 | 2023-08-09 | 2021-11-02 | 3.4 | 3.65 | — | 3.9 | 0.006 | 1.29 | 0.0 | 0.07 | 19.39 | 0.01 | 2.288 | 11.67 | 0.00 | 2.9 | 97.1 | 0.0 | -2.42 | 0.41 | 0.72 | 4.86 | 4.1 | 0.005 | 0.84 | 0.0 | 0.05 | 19.70 | 0.01 | 2.173 | 18.69 | 0.20 | 12.4 | 87.6 | 0.0 | -4.24 | 1.70 | 0.39 | 0.74 | 3.97 | 4343 | 540 | 17 | 20 | 0 | 0 | 0 | logfile |
✔ | 7Q66 | 13853 | 2023-08-09 | 2021-11-05 | 2.79 | 2.87 | 2.63 | 2.9 | 0.021 | 1.42 | 0.0 | 0.11 | 12.58 | 0.01 | 2.277 | 13.59 | 6.52 | 0.0 | 100.0 | 0.0 | -4.18 | 0.63 | 0.84 | 3.82 | 2.9 | 0.004 | 0.75 | 0.0 | 0.04 | 16.09 | 0.00 | 2.208 | 12.61 | 6.92 | 0.8 | 99.2 | 0.0 | -4.23 | 0.65 | 0.62 | 0.88 | 4.75 | 4807 | 682 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VH7 | 21200 | 2023-08-09 | 2020-01-09 | 3.8 | 3.84 | — | 4.1 | 0.007 | 1.03 | 0.0 | 0.05 | 15.14 | 0.01 | 2.318 | 28.35 | 2.13 | 12.4 | 87.6 | 0.0 | -4.78 | 0.54 | 0.62 | 2.62 | 4.0 | 0.003 | 0.75 | 0.0 | 0.05 | 16.44 | 0.00 | 2.317 | 9.92 | 0.71 | 5.9 | 94.1 | 0.0 | -4.23 | 3.68 | 0.58 | 0.66 | 1.63 | 4878 | 642 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Lii | 4053 | 2023-08-08 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | 3.8 | 0.003 | 0.88 | 0.0 | 0.04 | 15.96 | 0.01 | 2.201 | 13.15 | 1.41 | 14.6 | 84.7 | 0.7 | -4.22 | 0.87 | 0.56 | 0.67 | 1.49 | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CYV | 27085 | 2023-08-09 | 2022-05-24 | 3.5 | 3.17 | 3.47 | 3.7 | 0.003 | 0.61 | 0.0 | 0.05 | 10.01 | 0.00 | 2.423 | 5.36 | 0.00 | 5.9 | 94.1 | 0.0 | -4.11 | 0.58 | 0.72 | 2.74 | 3.4 | 0.004 | 0.75 | 0.0 | 0.05 | 16.08 | 0.00 | 2.184 | 9.50 | 2.17 | 7.0 | 92.4 | 0.6 | -4.20 | 1.35 | 0.59 | 0.75 | 2.25 | 5964 | 864 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NSL | 12570 | 2023-08-10 | 2021-03-08 | 3.1 | 3.25 | 2.92 | 3.2 | 0.012 | 1.84 | 0.0 | 0.08 | 14.48 | 0.01 | 2.367 | 4.69 | 0.00 | 3.7 | 96.3 | 0.0 | -5.51 | 0.54 | 0.77 | 3.94 | 3.2 | 0.005 | 0.71 | 0.0 | 0.04 | 17.33 | 0.00 | 2.133 | 7.46 | 0.87 | 8.6 | 91.4 | 0.0 | -4.19 | 0.99 | 0.56 | 0.82 | 3.20 | 8323 | 595 | 7 | 0 | 0 | 0 | 4053 | logfile |
✔ | 7QiG | 13989 | 2023-08-09 | 2021-12-14 | 2.7 | 2.81 | — | 2.8 | 0.005 | 0.69 | 0.0 | 0.05 | 14.67 | 0.01 | 2.138 | 2.72 | 0.00 | 8.7 | 91.3 | 0.0 | -4.18 | 0.37 | 0.86 | 6.92 | 2.8 | 0.003 | 0.64 | 0.0 | 0.05 | 17.73 | 0.00 | 2.134 | 6.24 | 0.87 | 10.0 | 90.0 | 0.0 | -4.19 | 0.62 | 0.38 | 0.87 | 5.69 | 3213 | 396 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L2T | 0814 | 2023-08-13 | 2019-10-06 | 4.1 | 4.14 | — | 4.2 | 0.003 | 0.61 | 0.0 | 0.05 | 12.33 | 0.00 | 2.222 | 5.89 | 0.15 | 13.8 | 86.0 | 0.2 | -5.72 | 0.61 | 0.76 | — | 4.2 | 0.005 | 0.77 | 0.0 | 0.05 | 12.54 | 0.01 | 2.083 | 8.68 | 0.00 | 17.6 | 82.3 | 0.1 | -4.18 | 0.52 | 0.61 | 0.77 | — | 13604 | 1889 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TMC | 25995 | 2023-08-09 | 2022-01-19 | 3.25 | 3.24 | 2.95 | 4.2 | 0.005 | 0.72 | 0.0 | 0.07 | 14.28 | 0.01 | 2.152 | 13.78 | 0.00 | 9.5 | 90.5 | 0.0 | -4.08 | 0.21 | 0.31 | -0.39 | 3.4 | 0.005 | 0.89 | 0.0 | 0.07 | 17.14 | 0.01 | 2.144 | 18.47 | 0.53 | 12.0 | 88.0 | 0.0 | -4.18 | 1.94 | 0.36 | 0.76 | 3.09 | 3426 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7MLZ | 23914 | 2023-08-09 | 2021-04-29 | 3.71 | 4.27 | 3.83 | 3.9 | 0.004 | 0.82 | 0.0 | 0.05 | 12.96 | 0.01 | 2.150 | 18.13 | 0.00 | 17.4 | 82.5 | 0.2 | -4.08 | 0.80 | 0.62 | 1.39 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 14.96 | 0.00 | 2.129 | 15.09 | 0.19 | 15.6 | 84.3 | 0.2 | -4.17 | 0.50 | 0.82 | 0.65 | 1.05 | 4864 | 624 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 7P6E | 13227 | 2023-08-10 | 2021-07-15 | 3.4 | 3.40 | 3.47 | 4.1 | 0.009 | 0.96 | 0.0 | 0.06 | 8.26 | 0.01 | 2.358 | 3.99 | 0.00 | 5.9 | 94.1 | 0.0 | -4.80 | 0.54 | 0.80 | 4.38 | 4.1 | 0.005 | 0.72 | 0.0 | 0.05 | 13.11 | 0.00 | 2.134 | 11.17 | 0.21 | 8.3 | 91.7 | 0.0 | -4.15 | 2.70 | 0.51 | 0.79 | 4.06 | 8090 | 1050 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NCH | 12266 | 2023-08-12 | 2021-01-28 | 3.84 | 3.76 | 3.69 | 3.8 | 0.013 | 1.61 | 2.0 | 0.10 | 14.68 | 0.00 | 2.485 | 0.00 | 0.19 | 9.4 | 90.6 | 0.0 | -3.70 | 0.60 | 0.45 | 2.36 | 3.8 | 0.003 | 0.70 | 2.0 | 0.05 | 15.63 | 0.00 | 1.978 | 9.23 | 0.00 | 11.2 | 88.8 | 0.0 | -4.13 | 1.66 | 0.64 | 0.52 | 2.25 | 11292 | 816 | 12 | 0 | 0 | 0 | 5796 | logfile |