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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8GS4 | 34220 | 2023-04-20 | 2022-09-04 | 3.5 | 3.66 | 3.52 | 3.7 | 0.004 | 0.83 | 0.0 | 0.05 | 13.58 | 0.01 | 2.251 | 11.71 | 0.00 | 13.3 | 86.7 | 0.0 | -4.70 | 0.69 | 0.75 | 2.42 | 3.7 | 0.003 | 0.77 | 0.0 | 0.04 | 15.61 | 0.01 | 2.148 | 10.85 | 0.23 | 11.3 | 88.7 | 0.0 | -3.30 | 0.39 | 0.67 | 0.75 | 1.27 | 8250 | 1050 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BZY | 30263 | 2023-04-20 | 2020-04-29 | 3.7 | 5.07 | 3.67 | 2.9 | 0.005 | 1.03 | 0.0 | 0.05 | 7.60 | 0.00 | 2.175 | 11.89 | 0.00 | 15.0 | 84.6 | 0.3 | -5.26 | 0.62 | 0.47 | — | 3.4 | 0.003 | 0.82 | 0.0 | 0.05 | 6.08 | 0.00 | 2.106 | 13.54 | 0.00 | 14.3 | 85.7 | 0.0 | -3.30 | 1.23 | 0.85 | 0.74 | — | 6169 | 1260 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PAG | 13269 | 2023-04-20 | 2021-07-29 | 4.0 | 4.22 | — | 4.1 | 0.005 | 0.75 | 0.0 | 0.05 | 13.86 | 0.01 | 2.177 | 12.66 | 0.00 | 6.3 | 93.7 | 0.0 | -1.70 | 0.30 | 0.60 | — | 4.2 | 0.004 | 1.05 | 0.0 | 0.05 | 16.63 | 0.00 | 2.144 | 20.38 | 0.23 | 10.5 | 89.5 | 0.0 | -3.28 | 1.36 | 0.34 | 0.68 | — | 4040 | 509 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 7N95 | 24250 | 2023-04-20 | 2021-06-16 | 4.1 | 3.45 | — | 2.1 | 0.002 | 0.74 | 0.0 | 0.00 | 5.05 | 0.00 | 2.573 | 0.10 | 0.00 | 7.1 | 92.3 | 0.6 | -1.14 | 0.78 | 0.70 | — | 2.1 | 0.004 | 1.01 | 0.0 | 0.00 | 4.97 | 0.00 | 2.503 | 6.53 | 0.00 | 18.1 | 81.7 | 0.2 | -3.27 | 1.81 | 0.85 | 0.83 | — | 7299 | 2433 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HDD | 0204 | 2023-04-28 | 2018-08-17 | 4.5 | 5.28 | — | 4.4 | 0.009 | 1.36 | 3.0 | 0.08 | 12.60 | 0.01 | 2.220 | 12.08 | 1.07 | 18.3 | 81.6 | 0.1 | -6.11 | 0.74 | 0.42 | — | 8.5 | 0.005 | 1.07 | 0.0 | 0.05 | 13.67 | 0.01 | 1.438 | 29.15 | 0.00 | 16.5 | 83.1 | 0.4 | -3.27 | 5.54 | 0.87 | 0.54 | — | 28154 | 3605 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TKG | 25968 | 2023-04-25 | 2022-01-17 | 4.5 | 7.60 | 4.79 | 4.2 | 0.019 | 2.20 | 0.0 | 0.00 | 6.95 | 0.01 | 2.361 | 0.08 | 0.00 | 4.3 | 94.2 | 1.5 | -0.60 | 0.58 | 0.61 | — | 4.3 | 0.007 | 1.14 | 0.0 | 0.00 | 7.61 | 0.01 | 2.015 | 33.28 | 0.00 | 19.7 | 80.0 | 0.3 | -3.26 | 2.09 | 0.77 | 0.80 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UM1 | 20815 | 2023-04-24 | 2019-10-08 | 3.46 | 3.57 | — | 3.5 | 0.014 | 1.83 | 7.0 | 0.09 | 15.07 | 0.01 | 2.014 | 9.77 | 0.84 | 6.9 | 92.9 | 0.2 | -4.82 | 0.69 | 0.70 | 2.32 | 3.5 | 0.005 | 0.81 | 0.0 | 0.05 | 16.18 | 0.01 | 2.052 | 17.90 | 0.68 | 12.3 | 87.6 | 0.1 | -3.26 | 0.61 | 0.73 | 0.77 | 2.02 | 17134 | 2208 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 6L31 | 0816 | 2023-04-25 | 2019-10-07 | 4.18 | 4.92 | — | 4.8 | 0.007 | 1.26 | 7.0 | 0.07 | 16.23 | 0.01 | 1.738 | 16.77 | 2.27 | 11.7 | 88.0 | 0.3 | -4.45 | 0.38 | 0.72 | — | 4.9 | 0.005 | 0.86 | 0.0 | 0.05 | 14.12 | 0.01 | 1.950 | 28.23 | 0.04 | 12.5 | 87.4 | 0.1 | -3.26 | 2.40 | 0.38 | 0.72 | — | 20905 | 2670 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B40 | 7046 | 2023-04-23 | 2017-09-25 | 4.3 | 4.48 | — | 4.4 | 0.007 | 1.13 | 0.0 | 0.06 | 16.61 | 0.01 | 2.269 | 8.08 | 0.00 | 18.8 | 81.0 | 0.2 | -5.22 | 0.76 | 0.70 | — | 4.4 | 0.003 | 0.79 | 0.0 | 0.04 | 17.69 | 0.01 | 2.079 | 18.20 | 0.00 | 16.2 | 83.8 | 0.0 | -3.25 | 2.12 | 0.80 | 0.77 | — | 16202 | 1800 | 12 | 100 | 42 | 0 | 0 | logfile |
✔ | 5WRG | 6679 | 2023-04-23 | 2016-12-01 | 4.3 | 4.45 | — | 4.3 | 0.007 | 1.40 | 0.0 | 0.07 | 12.06 | 0.01 | 2.191 | 9.91 | 0.53 | 18.0 | 81.4 | 0.7 | -5.05 | 0.66 | 0.69 | — | 4.3 | 0.004 | 1.00 | 0.0 | 0.05 | 12.31 | 0.00 | 2.019 | 20.07 | 0.00 | 18.0 | 81.8 | 0.1 | -3.25 | 1.52 | 0.68 | 0.76 | — | 16317 | 2208 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZAL | 6905 | 2023-04-22 | 2018-02-07 | 4.7 | 4.44 | — | 3.8 | 0.008 | 1.44 | 1.0 | 0.07 | 12.67 | 0.01 | 2.215 | 19.06 | 0.97 | 16.1 | 83.2 | 0.7 | -5.19 | 0.87 | 0.74 | — | 3.8 | 0.005 | 0.95 | 0.0 | 0.05 | 13.33 | 0.01 | 2.089 | 38.66 | 0.00 | 16.3 | 83.5 | 0.2 | -3.24 | 1.62 | 0.84 | 0.60 | — | 12346 | 1389 | 3 | 58 | 0 | 0 | 0 | logfile |
✔ | 7E3C | 30979 | 2023-04-19 | 2021-02-08 | 4.2 | 3.87 | — | 3.7 | 0.026 | 1.55 | 0.0 | 0.05 | 13.84 | 0.01 | 2.151 | 21.49 | 0.00 | 17.2 | 82.3 | 0.5 | -3.63 | 0.79 | 0.79 | — | 3.7 | 0.004 | 0.75 | 0.0 | 0.05 | 13.96 | 0.00 | 2.140 | 14.75 | 0.00 | 12.6 | 87.4 | 0.0 | -3.24 | 1.57 | 0.79 | 0.79 | — | 2937 | 405 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6LYP | 30017 | 2023-04-23 | 2020-02-15 | 3.3 | 3.12 | 3.20 | 3.5 | 0.011 | 1.35 | 0.0 | 0.08 | 11.79 | 0.01 | 2.148 | 8.25 | 1.40 | 9.8 | 90.2 | 0.0 | -6.19 | 0.50 | 0.70 | 2.83 | 3.5 | 0.005 | 0.78 | 0.0 | 0.05 | 14.72 | 0.00 | 2.225 | 12.51 | 0.43 | 9.8 | 90.2 | 0.0 | -3.23 | 1.21 | 0.54 | 0.74 | 2.12 | 15169 | 2009 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X1T | 32949 | 2023-04-20 | 2022-02-24 | 3.26 | 3.46 | — | 3.5 | 0.007 | 0.98 | 3.0 | 0.22 | 13.90 | 0.01 | 1.351 | 5.09 | 0.92 | 8.9 | 91.0 | 0.1 | -5.73 | 0.60 | 0.70 | 1.68 | 3.5 | 0.003 | 0.68 | 0.0 | 0.05 | 15.09 | 0.00 | 2.132 | 10.04 | 0.46 | 6.9 | 93.1 | 0.0 | -3.23 | 0.44 | 0.61 | 0.71 | 1.88 | 7488 | 1082 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7JSE | 22451 | 2023-04-22 | 2020-08-14 | 4.6 | 5.13 | — | 4.2 | 0.001 | 0.38 | 0.0 | 0.02 | 10.51 | 0.00 | 2.425 | 0.00 | 0.00 | 11.4 | 88.0 | 0.6 | -2.68 | 0.79 | 0.50 | — | 3.9 | 0.007 | 1.10 | 0.0 | 0.09 | 14.86 | 0.00 | 2.156 | 11.87 | 0.00 | 20.1 | 79.9 | 0.0 | -3.21 | 2.77 | 0.87 | 0.64 | — | 13288 | 3168 | 24 | 32 | 0 | 0 | 0 | logfile |
✔ | 8DRQ | 27681 | 2023-04-20 | 2022-07-21 | 4.16 | 4.28 | 4.60 | 4.1 | 0.004 | 0.89 | 0.0 | 0.05 | 15.60 | 0.01 | 2.283 | 15.85 | 0.00 | 5.9 | 94.1 | 0.0 | -3.30 | 0.39 | 0.56 | — | 4.1 | 0.003 | 0.81 | 0.0 | 0.05 | 13.41 | 0.00 | 2.156 | 19.67 | 0.00 | 8.1 | 91.9 | 0.0 | -3.21 | 1.78 | 0.41 | 0.56 | — | 3321 | 407 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F7J | 28905 | 2023-04-20 | 2022-11-18 | 4.32 | 4.45 | 4.63 | 8.9 | 0.005 | 0.92 | 0.0 | 0.05 | 15.44 | 0.01 | 2.282 | 15.12 | 0.26 | 5.7 | 94.3 | 0.0 | -3.18 | 0.38 | 0.32 | — | 4.3 | 0.004 | 0.80 | 0.0 | 0.04 | 13.92 | 0.01 | 2.122 | 24.96 | 0.00 | 9.4 | 90.6 | 0.0 | -3.21 | 2.94 | 0.44 | 0.45 | — | 3321 | 407 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CS1 | 7579 | 2023-04-27 | 2018-03-19 | 4.6 | 4.79 | 4.84 | 6.8 | 0.006 | 0.92 | 0.0 | 0.06 | 8.77 | 0.01 | 2.229 | 7.26 | 0.00 | 7.2 | 92.8 | 0.0 | -4.20 | 0.61 | 0.31 | — | 4.6 | 0.007 | 1.10 | 1.0 | 0.06 | 11.78 | 0.01 | 1.900 | 35.89 | 0.00 | 11.7 | 88.3 | 0.0 | -3.21 | 1.93 | 0.71 | 0.58 | — | 25995 | 3202 | 27 | 0 | 75 | 0 | 0 | logfile |
✔ | 7DHR | 30682 | 2023-04-20 | 2020-11-17 | 3.8 | 3.96 | — | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 14.18 | 0.01 | 2.329 | 3.92 | 0.31 | 9.1 | 90.8 | 0.1 | -6.33 | 0.70 | 0.77 | 3.13 | 3.9 | 0.002 | 0.61 | 0.0 | 0.04 | 15.36 | 0.00 | 2.231 | 7.99 | 0.77 | 5.7 | 94.3 | 0.0 | -3.21 | 0.46 | 0.69 | 0.76 | 1.86 | 7057 | 977 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7SWN | 25476 | 2023-04-20 | 2021-11-20 | 4.3 | 3.77 | — | 3.5 | 0.007 | 1.06 | 0.0 | 0.06 | 14.58 | 0.01 | 2.203 | 41.73 | 0.00 | 21.9 | 78.1 | 0.0 | -4.82 | 0.57 | 0.68 | — | 3.5 | 0.003 | 0.82 | 0.0 | 0.05 | 13.82 | 0.01 | 2.261 | 21.52 | 0.00 | 11.3 | 88.7 | 0.0 | -3.20 | 2.08 | 0.57 | 0.68 | — | 3283 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |