Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5WRG	6679	2023-07-08	2016-12-01	4.3	4.45	—	4.3	0.007	1.40	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.004	1.00	0.0	0.05	12.31	0.00	2.019	20.07	0.00	18.0	81.8	0.1	-3.25	1.52	0.68	0.76	—	16317	2208	3	0	0	0	0	logfile
✔	6B40	7046	2023-07-08	2017-09-25	4.3	4.48	—	4.4	0.007	1.13	0.0	0.06	16.61	0.01	2.269	8.08	0.00	18.8	81.0	0.2	-5.22	0.76	0.70	—	4.4	0.003	0.79	0.0	0.04	17.69	0.01	2.079	18.20	0.00	16.2	83.8	0.0	-3.25	2.12	0.80	0.77	—	16202	1800	12	100	42	0	0	logfile
✔	5ZAL	6905	2023-07-06	2018-02-07	4.7	4.44	—	3.8	0.008	1.44	1.0	0.07	12.67	0.01	2.215	19.06	0.97	16.1	83.2	0.7	-5.19	0.87	0.74	—	3.8	0.005	0.95	0.0	0.05	13.33	0.01	2.089	38.66	0.00	16.3	83.5	0.2	-3.24	1.62	0.84	0.60	—	12346	1389	3	58	0	0	0	logfile
✔	7E3C	30979	2023-07-03	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.84	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.004	0.75	0.0	0.05	13.96	0.00	2.140	14.75	0.00	12.6	87.4	0.0	-3.24	1.57	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✔	6WDB	21630	2023-07-26	2020-03-31	4.0	4.30	5.11	4.1	0.006	0.99	0.0	0.08	13.33	0.01	2.211	11.44	0.77	11.9	86.2	1.9	-4.97	0.78	0.72	—	4.1	0.005	0.80	0.0	0.04	17.32	0.01	1.991	33.89	1.16	12.4	87.4	0.2	-3.23	0.91	0.81	0.77	—	150149	6024	59	4807	0	0	0	logfile
✔	7X1T	32949	2023-07-04	2022-02-24	3.26	3.46	—	3.5	0.007	0.98	3.0	0.22	13.90	0.01	1.351	5.09	0.92	8.9	91.0	0.1	-5.73	0.60	0.70	1.68	3.5	0.003	0.68	0.0	0.05	15.09	0.00	2.132	10.04	0.46	6.9	93.1	0.0	-3.23	0.44	0.61	0.71	1.88	7488	1082	6	0	1	0	0	logfile
✔	6LYP	30017	2023-07-07	2020-02-15	3.3	3.12	3.20	3.5	0.011	1.35	0.0	0.08	11.79	0.01	2.148	8.25	1.40	9.8	90.2	0.0	-6.19	0.50	0.70	2.83	3.5	0.005	0.78	0.0	0.05	14.72	0.00	2.225	12.51	0.43	9.8	90.2	0.0	-3.23	1.21	0.54	0.74	2.12	15169	2009	7	0	0	0	0	logfile
✔	6WDi	21637	2023-07-25	2020-03-31	4.0	4.30	4.79	4.1	0.006	0.98	0.0	0.08	13.16	0.01	2.280	9.88	0.49	12.5	85.9	1.6	-4.84	0.77	0.71	—	4.1	0.005	0.81	0.0	0.04	17.46	0.01	1.877	32.96	0.87	12.8	87.1	0.1	-3.23	1.61	0.81	0.75	—	149628	5954	59	4807	0	0	0	logfile
✔	6i0Y	0322	2023-07-16	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	13.02	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.007	0.91	0.0	0.04	16.58	0.01	0.967	25.22	1.81	15.5	82.6	1.9	-3.22	1.65	0.61	0.74	0.89	93619	3551	48	3049	144	439	0	logfile
✔	7DHR	30682	2023-07-04	2020-11-17	3.8	3.96	—	3.9	0.004	0.86	0.0	0.05	14.18	0.01	2.329	3.92	0.31	9.1	90.8	0.1	-6.33	0.70	0.77	3.13	3.9	0.002	0.61	0.0	0.04	15.36	0.00	2.231	7.99	0.77	5.7	94.3	0.0	-3.21	0.46	0.69	0.76	1.86	7057	977	5	0	1	0	0	logfile
✔	8F7J	28905	2023-07-03	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.004	0.80	0.0	0.04	13.92	0.01	2.122	24.96	0.00	9.4	90.6	0.0	-3.21	2.94	0.44	0.45	—	3321	407	1	0	0	0	0	logfile
✔	8DRQ	27681	2023-07-03	2022-07-21	4.16	4.28	4.60	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.003	0.81	0.0	0.05	13.41	0.00	2.156	19.67	0.00	8.1	91.9	0.0	-3.21	1.78	0.41	0.56	—	3321	407	1	0	0	0	0	logfile
✔	7JSE	22451	2023-07-06	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.9	0.007	1.10	0.0	0.09	14.86	0.00	2.156	11.87	0.00	20.1	79.9	0.0	-3.21	2.77	0.87	0.64	—	13288	3168	24	32	0	0	0	logfile
✔	6CS1	7579	2023-07-12	2018-03-19	4.6	4.79	4.84	6.8	0.006	0.92	0.0	0.06	8.77	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.007	1.10	1.0	0.06	11.78	0.01	1.900	35.89	0.00	11.7	88.3	0.0	-3.21	1.93	0.71	0.58	—	25995	3202	27	0	75	0	0	logfile
✔	7EEQ	31080	2023-07-16	2021-03-19	3.96	3.15	—	3.0	0.006	0.98	0.0	0.06	10.42	0.01	2.316	4.10	0.17	12.0	88.0	0.0	-4.80	0.52	0.74	2.63	3.0	0.004	0.71	0.0	0.04	13.64	0.00	2.187	9.87	0.17	9.6	90.4	0.0	-3.21	1.16	0.53	0.76	2.86	34260	4488	24	0	0	0	0	logfile
✔	6oGG	20057	2023-07-22	2019-04-02	4.2	5.09	—	3.4	0.006	0.85	0.0	0.07	13.94	0.01	2.108	14.59	0.56	10.6	89.3	0.1	-4.88	0.87	0.76	—	3.4	0.004	0.72	0.0	0.04	17.77	0.01	1.791	35.74	0.06	12.4	87.5	0.1	-3.21	1.77	0.88	0.82	—	147733	6113	55	4655	0	0	0	logfile
✔	7VT0	32117	2023-07-05	2021-10-27	3.4	3.53	—	3.5	0.011	1.31	16.0	0.06	14.91	0.01	2.126	14.86	3.65	14.3	82.6	3.1	-4.14	0.68	0.76	3.22	3.5	0.004	0.78	0.0	0.05	15.86	0.00	2.132	10.74	0.00	14.4	84.8	0.8	-3.20	1.20	0.69	0.78	2.83	10536	1326	2	0	0	0	0	logfile
✔	7E2C	30954	2023-07-11	2021-02-05	4.18	4.23	—	4.1	0.008	1.50	3.0	0.08	15.12	0.01	1.675	10.10	0.94	15.3	83.6	1.1	-5.41	0.78	0.68	—	4.1	0.003	0.77	1.0	0.05	14.06	0.00	2.118	12.98	0.00	13.0	86.7	0.2	-3.20	0.71	0.76	0.68	—	23020	3295	11	0	0	0	0	logfile
✔	7JT3	22472	2023-07-23	2020-08-17	3.7	4.04	4.23	3.8	0.006	0.99	3.0	0.08	13.56	0.01	2.077	12.75	1.24	12.9	85.4	1.7	-5.28	0.83	0.78	0.65	3.8	0.005	0.79	0.0	0.04	16.94	0.01	1.996	32.18	1.04	12.8	87.0	0.1	-3.20	0.89	0.86	0.80	0.45	148603	6250	58	4652	0	0	0	logfile
✔	7SWN	25476	2023-07-03	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.003	0.82	0.0	0.05	13.82	0.01	2.261	21.52	0.00	11.3	88.7	0.0	-3.20	2.08	0.57	0.68	—	3283	422	3	0	0	0	0	logfile

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