Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5G2Y	3332	2021-01-05	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.00	0.0	0.05	23.93	0.01	1.967	73.15	0.00	0.0	0.0	0.0	—	3.27	0.88	0.77	—	13494	0	1	630	0	0	0	logfile
✔	6A7F	6993	2021-01-05	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.003	0.64	0.0	0.04	14.19	0.00	2.274	12.37	0.00	0.3	99.7	0.0	2.53	2.06	0.59	0.85	-0.22	10830	1410	30	0	0	0	0	logfile
✔	6ULC	20813	2021-01-06	2019-10-07	4.6	4.75	—	4.5	0.005	0.77	0.0	0.06	14.66	0.00	2.086	5.58	0.29	0.0	100.0	0.0	-4.46	0.79	0.67	—	4.5	0.005	0.86	0.0	0.06	13.98	0.01	2.017	25.53	0.00	13.6	86.4	0.0	-3.05	0.93	0.79	0.70	—	19968	2301	46	0	142	0	0	logfile
✔	6U5o	20651	2021-01-06	2019-08-28	3.7	3.81	—	3.8	0.005	0.79	0.0	0.04	14.70	0.01	2.093	5.74	0.00	0.0	100.0	0.0	-4.22	0.65	0.75	1.93	3.8	0.004	0.65	0.0	0.04	15.02	0.00	1.869	11.44	0.07	8.3	91.7	0.0	-0.97	1.53	0.68	0.79	2.13	26316	1623	5	0	0	0	13339	logfile
✔	7JSV	22460	2021-01-06	2020-08-16	3.9	3.98	—	4.0	0.019	1.51	0.0	0.10	10.55	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.003	0.63	0.0	0.03	13.83	0.00	2.155	9.22	0.00	0.4	99.6	0.0	0.15	0.93	0.64	0.83	3.05	22140	2706	82	0	41	0	0	logfile
✔	6oEH	20020	2021-01-07	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.7	0.007	1.05	0.0	0.04	5.10	0.00	2.207	12.93	0.00	0.0	0.0	0.0	—	0.57	0.37	0.76	—	32900	0	14	0	6580	0	0	logfile
✔	6LHW	0901	2021-01-05	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.7	0.007	1.25	0.0	0.04	6.28	0.00	2.051	40.84	0.00	0.0	0.0	0.0	—	3.27	0.83	0.79	—	7644	0	3	0	1541	0	0	logfile
✔	6X5i	22051	2021-01-05	2020-05-26	4.3	4.27	—	4.0	0.061	3.17	210.0	0.20	28.86	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.010	1.57	210.0	0.14	27.11	0.00	1.555	68.00	0.00	0.0	0.0	0.0	—	4.23	0.68	0.74	—	4480	70	70	0	280	0	0	logfile
✔	6oG3	20051	2021-01-05	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.004	0.98	0.0	0.00	7.40	0.00	2.621	32.79	0.00	9.1	90.9	0.0	-1.22	2.26	0.68	0.87	—	1215	396	4	0	9	0	0	logfile
✔	6QYZ	4680	2021-01-05	2019-03-10	4.6	2.98	—	6.0	0.009	1.14	0.0	0.04	24.59	0.01	1.934	53.60	0.00	0.0	0.0	0.0	—	0.68	0.53	—	2.9	0.006	1.16	0.0	0.07	28.21	0.01	2.052	71.65	0.00	0.0	0.0	0.0	—	4.55	0.73	0.67	—	7300	0	5	345	0	0	0	logfile
✔	6TUP	10593	2021-01-06	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.3	0.025	1.99	0.0	0.19	25.49	0.01	0.963	94.99	0.00	2.9	97.1	0.0	-3.02	8.44	0.56	0.60	-0.04	22400	2300	100	300	0	0	0	logfile
✔	6YoV	10864	2021-01-05	2020-04-15	3.42	4.61	—	3.9	0.011	1.14	0.0	0.07	25.21	0.01	2.395	1.39	0.00	0.0	100.0	0.0	0.87	0.88	0.82	1.84	3.9	0.003	0.61	0.0	0.03	25.62	0.00	2.185	10.10	0.00	1.8	98.2	0.0	2.84	1.26	0.88	0.84	1.96	12298	898	18	262	8	0	0	logfile
✔	6oDJ	20021	2021-01-06	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.6	0.012	1.74	0.0	0.06	7.95	0.00	2.065	11.87	0.00	0.0	0.0	0.0	—	0.66	0.81	0.84	—	25415	0	17	0	5083	0	0	logfile
✔	4UQ8	2676	2021-01-06	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.52	0.0	0.41	5.92	0.00	2.134	43.68	0.00	0.0	0.0	0.0	—	2.30	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	6TUQ	10594	2021-01-06	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.002	0.67	0.0	0.04	9.98	0.00	2.231	9.62	0.00	0.1	99.9	0.0	-0.60	1.69	0.68	0.86	0.85	16100	2300	50	0	0	0	0	logfile
✔	6LHV	0900	2021-01-05	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.60	—	4.4	0.009	1.32	0.0	0.04	6.42	0.00	2.069	50.52	0.00	0.0	0.0	0.0	—	3.59	0.85	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	6o1o	0454	2021-01-06	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.013	1.79	0.0	0.07	14.18	0.00	1.994	33.65	0.00	0.0	0.0	0.0	—	1.72	0.76	0.75	—	15193	0	14	66	2757	0	0	logfile
✔	6oEF	20020	2021-01-07	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.18	0.0	0.05	5.88	0.00	2.195	7.70	0.00	0.0	0.0	0.0	—	0.60	0.48	0.79	—	51240	0	14	0	10248	0	0	logfile
✔	6UES	20755	2021-01-05	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.77	—	3.3	0.007	0.89	0.0	0.04	21.25	0.01	1.834	37.21	0.00	0.0	0.0	0.0	—	1.33	0.87	0.82	—	3842	0	1	119	0	0	1291	logfile
✔	6PoM	20416	2021-01-05	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.28	0.0	0.06	21.79	0.01	1.928	59.11	0.00	0.0	0.0	0.0	—	1.80	0.74	0.80	—	4937	0	2	230	0	0	0	logfile

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