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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7RX4 | 24724 | 2024-03-16 | 2021-08-21 | 3.8 | 3.99 | — | 4.0 | 0.003 | 0.49 | 0.0 | 0.04 | 13.38 | 0.00 | 1.928 | 12.86 | 0.00 | 0.0 | 100.0 | 0.0 | 6.26 | 0.60 | 0.78 | 1.41 | 3.9 | 0.003 | 0.51 | 0.0 | 0.04 | 16.86 | 0.00 | 2.341 | 5.40 | 3.97 | 0.0 | 100.0 | 0.0 | 6.10 | 0.47 | 0.61 | 0.80 | 0.95 | 13560 | 1740 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2024-03-15 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.2 | 0.110 | 4.32 | 163.0 | 0.30 | 24.12 | 0.02 | 1.769 | 115.03 | 20.14 | 35.2 | 64.8 | 0.0 | -8.00 | 1.14 | 0.67 | 0.87 | 3.69 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K9F | 9948 | 2024-03-17 | 2019-06-15 | 3.7 | 7.50 | 4.15 | 7.2 | 0.002 | 0.45 | 0.0 | 0.03 | 11.87 | 0.00 | 2.356 | 5.29 | 0.00 | 0.0 | 100.0 | 0.0 | -0.68 | 0.66 | 0.76 | 0.04 | 4.6 | 0.004 | 1.12 | 0.0 | 0.05 | 17.65 | 0.00 | 2.073 | 28.91 | 4.11 | 1.6 | 98.4 | 0.0 | -0.15 | 3.85 | 0.68 | 0.84 | 0.73 | 8484 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BFA | 16018 | 2024-03-10 | 2022-10-24 | 3.0 | 3.05 | 3.02 | 3.3 | 0.002 | 0.39 | 0.0 | 0.05 | 13.94 | 0.00 | 2.592 | 6.46 | 0.00 | 0.0 | 100.0 | 0.0 | -3.13 | 0.47 | 0.82 | 5.29 | 3.2 | 0.005 | 0.54 | 0.0 | 0.05 | 17.34 | 0.00 | 2.120 | 7.90 | 1.07 | 3.1 | 96.9 | 0.0 | -2.25 | 1.03 | 0.53 | 0.88 | 6.68 | 2860 | 380 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B3A | 15824 | 2024-03-10 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.009 | 1.88 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.079 | 6.11 | 24.0 | 0.43 | 24.10 | 0.05 | 1.656 | 300.95 | 53.33 | 52.7 | 4.0 | 43.3 | -10.74 | 2.56 | 0.43 | 0.58 | 3.10 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 7UUQ | 26800 | 2024-03-10 | 2022-04-28 | 3.1 | 3.45 | 2.98 | 3.3 | 0.018 | 1.82 | 0.0 | 0.06 | 18.29 | 0.01 | 1.865 | 20.35 | 0.00 | 0.0 | 100.0 | 0.0 | -9.31 | 0.68 | 0.85 | 2.95 | 3.3 | 0.118 | 4.54 | 13.0 | 0.23 | 31.76 | 0.03 | 1.584 | 57.12 | 19.78 | 66.7 | 30.4 | 3.0 | -10.84 | 0.67 | 0.73 | 0.90 | 3.59 | 4760 | 364 | 98 | 0 | 98 | 0 | 0 | logfile |
✔ | 7PM3 | 13511 | 2024-03-14 | 2021-09-01 | 3.1 | 3.07 | 3.12 | 3.1 | 0.025 | 2.31 | 0.0 | 0.07 | 19.42 | 0.01 | 2.019 | 5.42 | 0.00 | 0.0 | 100.0 | 0.0 | -0.98 | 0.85 | 0.82 | 3.08 | 3.1 | 0.003 | 1.25 | 0.0 | 0.04 | 18.68 | 0.00 | 2.063 | 9.37 | 0.96 | 1.6 | 98.4 | 0.0 | 1.19 | 1.71 | 0.87 | 0.85 | 2.45 | 8940 | 1113 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6A7F | 6993 | 2024-03-15 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 17.57 | 0.00 | 2.172 | 14.38 | 3.17 | 0.5 | 99.5 | 0.0 | 2.16 | 2.03 | 0.60 | 0.87 | 0.10 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQH | 23486 | 2024-03-15 | 2021-02-13 | 3.4 | 3.12 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.098 | 31.15 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.59 | 0.80 | 5.83 | 3.2 | 0.111 | 4.15 | 178.0 | 0.30 | 24.80 | 0.02 | 1.776 | 108.91 | 21.76 | 35.4 | 64.6 | 0.0 | -7.62 | 3.47 | 0.65 | 0.87 | 3.27 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BFB | 16019 | 2024-03-10 | 2022-10-24 | 3.2 | 3.13 | 3.01 | 3.2 | 0.003 | 0.44 | 0.0 | 0.06 | 13.91 | 0.00 | 2.552 | 9.16 | 0.00 | 0.0 | 100.0 | 0.0 | -3.20 | 0.49 | 0.83 | 5.20 | 3.2 | 0.010 | 0.70 | 0.0 | 0.05 | 17.39 | 0.00 | 2.365 | 7.18 | 0.71 | 3.3 | 96.7 | 0.0 | -3.13 | 1.02 | 0.52 | 0.87 | 6.83 | 2860 | 380 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B3P | 15832 | 2024-03-17 | 2022-09-16 | 2.81 | 3.73 | 2.92 | 3.3 | 0.008 | 1.53 | 30.0 | 0.10 | 16.99 | 0.00 | 2.469 | 4.32 | 0.78 | 0.0 | 100.0 | 0.0 | -0.91 | 0.82 | 0.93 | 1.32 | 3.3 | 0.003 | 0.54 | 0.0 | 0.03 | 18.16 | 0.00 | 2.220 | 4.46 | 2.07 | 0.0 | 100.0 | 0.0 | 5.67 | 1.29 | 0.80 | 0.90 | 0.22 | 17620 | 2370 | 55 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZXo | 15012 | 2024-03-17 | 2022-05-21 | 2.5 | 2.89 | 2.54 | 2.7 | 0.003 | 0.52 | 0.0 | 0.04 | 15.39 | 0.01 | 2.216 | 2.71 | 1.36 | 0.0 | 100.0 | 0.0 | 4.19 | 0.72 | 0.88 | 3.47 | 2.7 | 0.002 | 0.46 | 0.0 | 0.04 | 16.02 | 0.00 | 2.309 | 3.01 | 1.52 | 1.0 | 99.0 | 0.0 | 4.56 | 0.62 | 0.65 | 0.91 | 3.03 | 17016 | 2124 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CL1 | 16709 | 2024-03-16 | 2023-02-16 | 3.35 | 3.67 | 2.87 | 3.6 | 0.008 | 0.93 | 0.0 | 0.06 | 12.18 | 0.01 | 0.393 | 14.11 | 0.54 | 0.0 | 99.1 | 0.9 | -1.05 | 0.61 | 0.75 | 3.54 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 15.24 | 0.00 | 2.182 | 11.26 | 0.72 | 2.1 | 97.4 | 0.5 | 1.93 | 0.64 | 0.65 | 0.78 | 3.06 | 10494 | 1362 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PoM | 20416 | 2024-03-10 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 25.63 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.23 | 0.0 | 0.06 | 27.09 | 0.01 | 1.945 | 59.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.74 | 0.74 | 0.79 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 7YC8 | 33736 | 2024-03-11 | 2022-07-01 | 4.14 | 7.25 | 4.31 | 4.1 | 0.002 | 0.51 | 0.0 | 0.02 | 25.12 | 0.00 | 2.079 | 18.05 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.96 | 0.87 | — | 4.1 | 0.006 | 0.81 | 0.0 | 0.04 | 27.57 | 0.01 | 1.977 | 68.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.24 | 0.97 | 0.89 | — | 8335 | 0 | 1 | 388 | 1 | 0 | 0 | logfile |
✔ | 8oLQ | 16961 | 2024-03-10 | 2023-03-30 | 4.0 | 3.17 | 3.52 | 3.7 | 0.003 | 0.49 | 0.0 | 0.05 | 7.64 | 0.00 | 2.207 | 3.69 | 0.00 | 0.0 | 100.0 | 0.0 | -0.52 | 0.25 | 0.70 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.05 | 13.94 | 0.00 | 2.277 | 7.79 | 2.40 | 4.7 | 95.3 | 0.0 | -1.51 | 1.42 | 0.24 | 0.70 | — | 2445 | 160 | 5 | 0 | 0 | 0 | 1185 | logfile |
✔ | 8CL4 | 16712 | 2024-03-18 | 2023-02-16 | 3.14 | 3.69 | 3.44 | 3.6 | 0.004 | 0.82 | 0.0 | 0.05 | 12.07 | 0.01 | 2.192 | 3.59 | 0.00 | 0.0 | 100.0 | 0.0 | -0.83 | 0.53 | 0.78 | 2.49 | 3.6 | 0.004 | 0.65 | 0.0 | 0.04 | 17.39 | 0.00 | 2.196 | 10.01 | 2.75 | 2.0 | 98.0 | 0.0 | 1.37 | 2.42 | 0.55 | 0.82 | 1.17 | 13335 | 1725 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q66 | 13853 | 2024-03-10 | 2021-11-05 | 2.79 | 2.87 | 2.63 | 2.9 | 0.021 | 1.42 | 0.0 | 0.11 | 12.58 | 0.01 | 2.277 | 13.59 | 6.52 | 0.0 | 100.0 | 0.0 | -4.18 | 0.63 | 0.84 | 3.82 | 2.9 | 0.005 | 0.76 | 0.0 | 0.04 | 16.32 | 0.00 | 2.195 | 14.14 | 12.65 | 0.8 | 99.2 | 0.0 | -4.12 | 0.64 | 0.62 | 0.88 | 4.35 | 4807 | 682 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQE | 23483 | 2024-03-10 | 2021-02-13 | 3.4 | 3.06 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.423 | 23.27 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.57 | 0.80 | 5.06 | 3.2 | 0.151 | 5.08 | 246.0 | 0.39 | 26.91 | 0.02 | 1.698 | 131.43 | 25.00 | 60.8 | 38.5 | 0.7 | -8.74 | 1.57 | 0.65 | 0.90 | 1.60 | 6048 | 576 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQF | 23484 | 2024-03-10 | 2021-02-13 | 3.8 | 3.13 | — | 4.0 | 0.016 | 1.46 | 0.0 | 0.03 | 18.37 | 0.00 | 2.258 | 22.81 | 2.08 | 0.0 | 100.0 | 0.0 | -4.77 | 0.59 | 0.78 | 4.63 | 3.2 | 0.155 | 6.28 | 251.0 | 0.42 | 27.36 | 0.03 | 1.648 | 200.72 | 26.56 | 66.8 | 29.3 | 3.9 | -9.78 | 2.03 | 0.69 | 0.87 | 2.76 | 5376 | 512 | 64 | 0 | 0 | 0 | 0 | logfile |