Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TUQ	10594	2021-05-04	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.003	0.72	0.0	0.04	12.41	0.00	2.368	12.09	0.06	0.4	99.6	0.0	-0.47	0.88	0.68	0.88	0.90	16100	2300	50	0	0	0	0	logfile
✔	4UQ8	2676	2021-05-05	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.51	0.0	0.41	5.93	0.00	2.133	43.42	0.00	0.0	0.0	0.0	—	2.30	0.62	0.84	—	28647	33	54	0	5686	0	0	logfile
✔	6A7F	6993	2021-05-04	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.003	0.71	0.0	0.04	18.33	0.00	2.197	15.41	0.08	1.4	98.6	0.0	2.16	2.07	0.59	0.85	-0.10	10830	1410	30	0	0	0	0	logfile
✔	6o1o	0454	2021-05-04	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.013	1.80	0.0	0.07	14.08	0.00	1.992	33.13	0.00	0.0	0.0	0.0	—	1.72	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	6U5o	20651	2021-05-05	2019-08-28	3.7	3.81	—	3.8	0.005	0.79	0.0	0.04	14.70	0.01	2.093	5.74	0.00	0.0	100.0	0.0	-4.22	0.65	0.75	1.93	3.8	0.006	0.73	0.0	0.04	17.05	0.01	1.853	11.89	0.34	9.6	90.4	0.0	-1.54	2.00	0.67	0.80	1.91	26316	1623	5	0	0	0	13339	logfile
✔	6UET	20756	2021-05-03	2019-09-23	4.1	4.91	—	5.1	0.010	1.58	0.0	0.07	17.24	0.02	1.977	4.64	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.98	0.0	0.05	23.04	0.01	1.754	50.46	0.00	0.0	0.0	0.0	—	0.81	0.64	0.78	—	3869	0	1	119	1	0	1291	logfile
✔	6oG3	20051	2021-05-03	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.002	0.66	0.0	0.00	4.56	0.00	2.650	3.04	0.00	4.9	95.1	0.0	0.48	2.10	0.67	0.85	—	1215	396	4	0	9	0	0	logfile
✔	6PoM	20416	2021-05-03	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.009	1.22	0.0	0.06	21.37	0.01	1.941	56.69	0.00	0.0	0.0	0.0	—	1.76	0.72	0.79	—	4937	0	2	230	0	0	0	logfile
✔	5G2Y	3332	2021-05-04	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.6	0.007	1.00	0.0	0.05	24.02	0.01	1.984	73.74	0.00	0.0	0.0	0.0	—	3.29	0.88	0.77	—	13494	0	1	630	0	0	0	logfile
✔	6QYZ	4680	2021-05-03	2019-03-10	4.6	2.98	—	6.0	0.009	1.14	0.0	0.04	24.59	0.01	1.934	53.60	0.00	0.0	0.0	0.0	—	0.68	0.53	—	4.6	0.006	1.16	0.0	0.07	28.45	0.01	2.047	73.66	0.00	0.0	0.0	0.0	—	4.53	0.71	0.60	—	7300	0	5	345	0	0	0	logfile
✔	6X64	22069	2021-05-04	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.010	1.26	0.0	0.05	5.50	0.00	2.101	11.47	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	6WL8	21817	2021-05-05	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.004	0.73	0.0	0.04	13.48	0.00	2.150	10.56	0.00	0.1	99.9	0.0	4.37	1.81	0.74	0.86	—	23850	3074	106	0	0	0	0	logfile
✔	6WL0	21814	2021-05-04	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.004	1.03	0.0	0.04	14.80	0.00	2.178	19.36	0.00	0.2	99.8	0.0	0.87	1.70	0.79	0.85	—	11480	1476	41	0	0	0	0	logfile
✔	6UES	20755	2021-05-03	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.77	—	3.3	0.007	0.88	0.0	0.04	21.27	0.01	1.781	36.95	0.00	0.0	0.0	0.0	—	1.34	0.88	0.82	—	3842	0	1	119	0	0	1291	logfile
✔	6WL1	21815	2021-05-04	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.003	0.47	0.0	0.03	16.27	0.00	2.282	6.91	0.89	0.0	100.0	0.0	6.40	0.74	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	6WKX	21812	2021-05-04	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.003	0.61	0.0	0.04	16.52	0.00	2.216	6.60	0.00	0.0	100.0	0.0	4.59	0.98	0.76	0.88	—	12915	1575	105	0	0	0	0	logfile
✔	6XL6	22235	2021-05-03	2020-06-28	3.0	3.41	—	3.3	0.019	0.70	0.0	0.10	20.23	0.00	2.257	5.23	0.00	0.0	100.0	0.0	-1.93	0.76	0.83	2.94	3.3	0.004	0.55	0.0	0.04	20.92	0.00	2.228	8.48	2.65	2.1	97.9	0.0	0.28	1.38	0.74	0.82	2.57	5456	536	6	46	4	0	0	logfile
✔	6K9F	9948	2021-05-04	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.7	0.004	1.20	0.0	0.05	17.60	0.00	1.955	30.85	0.42	1.5	98.5	0.0	-0.35	3.87	0.68	0.85	0.32	8484	1044	12	0	0	0	0	logfile
✔	6oDJ	20021	2021-05-05	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.6	0.012	1.74	0.0	0.06	7.96	0.00	2.119	11.87	0.00	0.0	0.0	0.0	—	0.66	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	6TUP	10593	2021-05-05	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.5	0.034	2.29	0.0	0.20	26.66	0.01	0.685	106.74	1.62	3.4	96.6	0.0	-3.10	9.78	0.57	0.63	0.14	22400	2300	100	300	0	0	0	logfile

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