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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5G2Y | 3332 | 2021-01-05 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.00 | 0.0 | 0.05 | 23.93 | 0.01 | 1.967 | 73.15 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.27 | 0.88 | 0.77 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 6A7F | 6993 | 2021-01-05 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 14.19 | 0.00 | 2.274 | 12.37 | 0.00 | 0.3 | 99.7 | 0.0 | 2.53 | 2.06 | 0.59 | 0.85 | -0.22 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ULC | 20813 | 2021-01-06 | 2019-10-07 | 4.6 | 4.75 | — | 4.5 | 0.005 | 0.77 | 0.0 | 0.06 | 14.66 | 0.00 | 2.086 | 5.58 | 0.29 | 0.0 | 100.0 | 0.0 | -4.46 | 0.79 | 0.67 | — | 4.5 | 0.005 | 0.86 | 0.0 | 0.06 | 13.98 | 0.01 | 2.017 | 25.53 | 0.00 | 13.6 | 86.4 | 0.0 | -3.05 | 0.93 | 0.79 | 0.70 | — | 19968 | 2301 | 46 | 0 | 142 | 0 | 0 | logfile |
✔ | 6U5o | 20651 | 2021-01-06 | 2019-08-28 | 3.7 | 3.81 | — | 3.8 | 0.005 | 0.79 | 0.0 | 0.04 | 14.70 | 0.01 | 2.093 | 5.74 | 0.00 | 0.0 | 100.0 | 0.0 | -4.22 | 0.65 | 0.75 | 1.93 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 15.02 | 0.00 | 1.869 | 11.44 | 0.07 | 8.3 | 91.7 | 0.0 | -0.97 | 1.53 | 0.68 | 0.79 | 2.13 | 26316 | 1623 | 5 | 0 | 0 | 0 | 13339 | logfile |
✔ | 7JSV | 22460 | 2021-01-06 | 2020-08-16 | 3.9 | 3.98 | — | 4.0 | 0.019 | 1.51 | 0.0 | 0.10 | 10.55 | 0.01 | 2.348 | 6.75 | 0.00 | 0.0 | 100.0 | 0.0 | 1.16 | 0.61 | 0.80 | 2.43 | 4.0 | 0.003 | 0.63 | 0.0 | 0.03 | 13.83 | 0.00 | 2.155 | 9.22 | 0.00 | 0.4 | 99.6 | 0.0 | 0.15 | 0.93 | 0.64 | 0.83 | 3.05 | 22140 | 2706 | 82 | 0 | 41 | 0 | 0 | logfile |
✔ | 6oEH | 20020 | 2021-01-07 | 2019-03-27 | 3.8 | 3.93 | — | 3.7 | 0.010 | 1.38 | 0.0 | 0.07 | 11.62 | 0.01 | 2.381 | 2.81 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.77 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.04 | 5.10 | 0.00 | 2.207 | 12.93 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.37 | 0.76 | — | 32900 | 0 | 14 | 0 | 6580 | 0 | 0 | logfile |
✔ | 6LHW | 0901 | 2021-01-05 | 2019-12-10 | 4.84 | 5.29 | — | 4.6 | 0.008 | 1.37 | 1.0 | 0.05 | 5.28 | 0.00 | 1.530 | 14.43 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.64 | 0.56 | — | 4.7 | 0.007 | 1.25 | 0.0 | 0.04 | 6.28 | 0.00 | 2.051 | 40.84 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.27 | 0.83 | 0.79 | — | 7644 | 0 | 3 | 0 | 1541 | 0 | 0 | logfile |
✔ | 6X5i | 22051 | 2021-01-05 | 2020-05-26 | 4.3 | 4.27 | — | 4.0 | 0.061 | 3.17 | 210.0 | 0.20 | 28.86 | 0.00 | 2.206 | 29.57 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.70 | — | 4.0 | 0.010 | 1.57 | 210.0 | 0.14 | 27.11 | 0.00 | 1.555 | 68.00 | 0.00 | 0.0 | 0.0 | 0.0 | — | 4.23 | 0.68 | 0.74 | — | 4480 | 70 | 70 | 0 | 280 | 0 | 0 | logfile |
✔ | 6oG3 | 20051 | 2021-01-05 | 2019-04-01 | 4.1 | 5.37 | — | 6.5 | 0.005 | 1.53 | 0.0 | 0.00 | 0.93 | 0.00 | 2.539 | 0.00 | 0.00 | 0.0 | 99.2 | 0.8 | 0.27 | 0.46 | 0.48 | — | 6.0 | 0.004 | 0.98 | 0.0 | 0.00 | 7.40 | 0.00 | 2.621 | 32.79 | 0.00 | 9.1 | 90.9 | 0.0 | -1.22 | 2.26 | 0.68 | 0.87 | — | 1215 | 396 | 4 | 0 | 9 | 0 | 0 | logfile |
✔ | 6QYZ | 4680 | 2021-01-05 | 2019-03-10 | 4.6 | 2.98 | — | 6.0 | 0.009 | 1.14 | 0.0 | 0.04 | 24.59 | 0.01 | 1.934 | 53.60 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.53 | — | 2.9 | 0.006 | 1.16 | 0.0 | 0.07 | 28.21 | 0.01 | 2.052 | 71.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 4.55 | 0.73 | 0.67 | — | 7300 | 0 | 5 | 345 | 0 | 0 | 0 | logfile |
✔ | 6TUP | 10593 | 2021-01-06 | 2020-01-08 | 3.2 | 3.52 | — | 3.3 | 0.011 | 1.02 | 0.0 | 0.05 | 21.23 | 0.00 | 0.032 | 54.60 | 0.00 | 0.0 | 100.0 | 0.0 | -7.04 | 0.49 | 0.47 | 1.19 | 3.3 | 0.025 | 1.99 | 0.0 | 0.19 | 25.49 | 0.01 | 0.963 | 94.99 | 0.00 | 2.9 | 97.1 | 0.0 | -3.02 | 8.44 | 0.56 | 0.60 | -0.04 | 22400 | 2300 | 100 | 300 | 0 | 0 | 0 | logfile |
✔ | 6YoV | 10864 | 2021-01-05 | 2020-04-15 | 3.42 | 4.61 | — | 3.9 | 0.011 | 1.14 | 0.0 | 0.07 | 25.21 | 0.01 | 2.395 | 1.39 | 0.00 | 0.0 | 100.0 | 0.0 | 0.87 | 0.88 | 0.82 | 1.84 | 3.9 | 0.003 | 0.61 | 0.0 | 0.03 | 25.62 | 0.00 | 2.185 | 10.10 | 0.00 | 1.8 | 98.2 | 0.0 | 2.84 | 1.26 | 0.88 | 0.84 | 1.96 | 12298 | 898 | 18 | 262 | 8 | 0 | 0 | logfile |
✔ | 6oDJ | 20021 | 2021-01-06 | 2019-03-26 | 3.5 | 3.75 | — | 3.7 | 0.009 | 1.50 | 0.0 | 0.07 | 11.32 | 0.01 | 2.438 | 2.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.81 | — | 3.6 | 0.012 | 1.74 | 0.0 | 0.06 | 7.95 | 0.00 | 2.065 | 11.87 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.66 | 0.81 | 0.84 | — | 25415 | 0 | 17 | 0 | 5083 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2021-01-06 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.52 | 0.0 | 0.41 | 5.92 | 0.00 | 2.134 | 43.68 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.30 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 6TUQ | 10594 | 2021-01-06 | 2020-01-08 | 3.9 | 4.52 | — | 4.0 | 0.009 | 1.01 | 0.0 | 0.05 | 11.22 | 0.00 | 2.191 | 8.45 | 3.12 | 0.0 | 100.0 | 0.0 | -6.69 | 0.68 | 0.88 | 0.54 | 4.0 | 0.002 | 0.67 | 0.0 | 0.04 | 9.98 | 0.00 | 2.231 | 9.62 | 0.00 | 0.1 | 99.9 | 0.0 | -0.60 | 1.69 | 0.68 | 0.86 | 0.85 | 16100 | 2300 | 50 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LHV | 0900 | 2021-01-05 | 2019-12-10 | 4.59 | 4.86 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 5.37 | 0.00 | 1.654 | 9.63 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.60 | — | 4.4 | 0.009 | 1.32 | 0.0 | 0.04 | 6.42 | 0.00 | 2.069 | 50.52 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.59 | 0.85 | 0.81 | — | 8456 | 0 | 3 | 0 | 1707 | 0 | 0 | logfile |
✔ | 6o1o | 0454 | 2021-01-06 | 2019-02-21 | 3.8 | 4.00 | — | 3.6 | 0.008 | 1.55 | 0.0 | 0.07 | 15.00 | 0.01 | 2.295 | 4.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.72 | 0.70 | — | 3.6 | 0.013 | 1.79 | 0.0 | 0.07 | 14.18 | 0.00 | 1.994 | 33.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.72 | 0.76 | 0.75 | — | 15193 | 0 | 14 | 66 | 2757 | 0 | 0 | logfile |
✔ | 6oEF | 20020 | 2021-01-07 | 2019-03-27 | 3.8 | 3.98 | — | 3.8 | 0.007 | 1.67 | 0.0 | 0.07 | 11.76 | 0.01 | 2.376 | 3.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.47 | 0.78 | — | 3.8 | 0.006 | 1.18 | 0.0 | 0.05 | 5.88 | 0.00 | 2.195 | 7.70 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.48 | 0.79 | — | 51240 | 0 | 14 | 0 | 10248 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2021-01-05 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.77 | — | 3.3 | 0.007 | 0.89 | 0.0 | 0.04 | 21.25 | 0.01 | 1.834 | 37.21 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.33 | 0.87 | 0.82 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 6PoM | 20416 | 2021-01-05 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 17.29 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.28 | 0.0 | 0.06 | 21.79 | 0.01 | 1.928 | 59.11 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.80 | 0.74 | 0.80 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |