Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UES	20755	2022-11-29	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6UET	20756	2022-11-29	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	15.67	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.96	0.0	0.05	22.24	0.01	1.829	50.36	0.00	0.0	0.0	0.0	—	0.76	0.66	0.81	—	3869	0	1	119	1	0	1291	logfile
✔	7RZV	24779	2022-11-29	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.90	0.00	2.235	5.24	0.34	0.0	100.0	0.0	5.91	0.88	0.83	0.82	1.88	2562	339	6	0	0	0	0	logfile
✔	7URi	26713	2022-11-29	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.42	0.0	0.07	23.80	0.01	2.074	24.37	0.00	0.0	0.0	0.0	—	1.69	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	6oG3	20051	2022-11-29	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.006	1.22	0.0	0.00	8.59	0.00	2.605	57.07	0.00	14.1	85.9	0.0	-1.78	2.19	0.66	0.84	—	1215	396	4	0	9	0	0	logfile
✔	8CZi	27098	2022-11-29	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.40	0.0	0.03	15.24	0.00	2.167	6.23	0.00	0.0	100.0	0.0	5.34	0.86	0.83	0.83	1.97	2550	339	6	0	0	0	0	logfile
✔	7URM	26714	2022-11-29	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.17	0.0	0.05	22.99	0.01	1.988	30.29	0.00	0.0	0.0	0.0	—	1.70	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	6PoM	20416	2022-11-29	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.24	0.0	0.06	21.39	0.01	1.928	58.97	0.00	0.0	0.0	0.0	—	1.75	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7LMS	23441	2022-11-29	2021-02-05	3.5	4.13	3.61	4.0	0.019	1.52	0.0	0.09	10.07	0.01	2.432	0.51	0.00	0.2	99.8	0.0	0.57	0.81	0.83	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4947	613	4	0	1	0	0	logfile
✔	7N5G	24189	2022-11-29	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.34	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.56	0.0	0.04	16.74	0.00	2.228	4.78	2.28	1.4	98.6	0.0	2.95	1.21	0.39	0.80	2.58	2926	371	1	0	1	0	0	logfile
✔	7N0K	24107	2022-11-29	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5154	626	2	0	0	0	0	logfile
✔	7RZS	24776	2022-11-29	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.43	0.0	0.04	15.95	0.00	2.318	4.66	0.71	0.0	100.0	0.0	5.82	1.18	0.78	0.81	1.27	2445	324	6	0	0	0	0	logfile
✔	7JVA	22497	2022-11-29	2020-08-20	3.6	3.93	3.68	3.9	0.016	1.50	0.0	0.09	10.05	0.01	2.398	0.80	0.30	1.0	98.8	0.2	0.87	0.84	0.81	3.50	3.9	0.003	0.72	0.0	0.04	14.65	0.00	2.169	9.91	0.61	3.6	96.4	0.0	-0.01	0.70	0.85	0.82	2.55	3248	420	4	0	3	0	0	logfile
✘	6YV1	10940	2022-11-29	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	7QV6	14168	2022-11-29	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4842	306	18	0	0	0	2556	logfile
✔	7LY0	23581	2022-11-29	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.17	0.0	0.08	9.71	0.01	2.515	1.10	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.004	0.62	0.0	0.04	15.36	0.00	2.150	9.39	2.14	2.1	97.9	0.0	0.60	1.63	0.70	0.77	4.31	2805	354	5	0	6	0	0	logfile
✔	7LXW	23577	2022-11-29	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.61	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.003	0.60	0.0	0.05	15.32	0.00	2.264	9.35	1.90	1.7	98.3	0.0	0.52	0.70	0.71	0.82	5.23	2524	317	5	0	5	0	0	logfile
✔	6i5A	4413	2022-11-29	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.88	4.22	1206	153	1	0	0	0	0	logfile
✔	7SJ4	25153	2022-11-29	2021-10-15	2.86	3.15	—	3.2	0.002	0.43	0.0	0.04	9.56	0.00	2.278	3.73	0.93	1.3	98.7	0.0	0.95	0.62	0.72	3.73	3.2	0.003	0.61	0.0	0.04	14.79	0.00	2.269	6.43	1.86	1.5	98.5	0.0	1.55	3.30	0.58	0.70	2.68	3909	481	4	0	0	24	0	logfile
✔	7N5F	24188	2022-11-29	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.43	0.00	2.324	7.74	0.95	1.3	98.7	0.0	2.60	0.79	0.35	0.77	3.26	3037	386	1	0	1	0	0	logfile

• Page 1 of 23
• next →