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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Q66 | 13853 | 2023-02-17 | 2021-11-05 | 2.79 | 2.87 | 2.63 | 2.9 | 0.021 | 1.42 | 0.0 | 0.11 | 12.58 | 0.01 | 2.277 | 13.59 | 6.52 | 0.0 | 100.0 | 0.0 | -4.18 | 0.63 | 0.84 | 3.82 | 2.9 | 0.004 | 0.75 | 0.0 | 0.04 | 16.09 | 0.00 | 2.208 | 12.61 | 6.92 | 0.8 | 99.2 | 0.0 | -4.23 | 0.65 | 0.62 | 0.88 | 4.75 | 4807 | 682 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PoM | 20416 | 2023-02-17 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 17.29 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.28 | 0.0 | 0.06 | 21.46 | 0.01 | 1.930 | 61.80 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.76 | 0.75 | 0.80 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 6LHW | 0901 | 2023-02-21 | 2019-12-10 | 4.84 | 5.29 | — | 4.6 | 0.008 | 1.37 | 1.0 | 0.05 | 5.28 | 0.00 | 1.530 | 14.43 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.64 | 0.56 | — | 4.6 | 0.008 | 1.29 | 0.0 | 0.04 | 6.56 | 0.00 | 2.027 | 44.00 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.20 | 0.83 | 0.64 | — | 7644 | 0 | 3 | 0 | 1541 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2023-02-20 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.02 | 0.0 | 0.05 | 23.60 | 0.01 | 1.933 | 73.59 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.96 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 6LHV | 0900 | 2023-02-21 | 2019-12-10 | 4.59 | 4.86 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 5.37 | 0.00 | 1.654 | 9.63 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.59 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 6.64 | 0.00 | 2.051 | 53.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.58 | 0.84 | 0.81 | — | 8456 | 0 | 3 | 0 | 1707 | 0 | 0 | logfile |
✔ | 7LYT | 23601 | 2023-02-21 | 2021-03-08 | 2.9 | 2.52 | 2.91 | 3.0 | 0.009 | 0.55 | 0.0 | 0.04 | 18.78 | 0.03 | 2.087 | 7.16 | 0.33 | 0.0 | 100.0 | 0.0 | -1.59 | 0.82 | 0.80 | 2.24 | 3.0 | 0.004 | 0.85 | 0.0 | 0.04 | 19.93 | 0.00 | 1.280 | 9.04 | 1.82 | 5.4 | 94.6 | 0.0 | -0.15 | 1.22 | 0.83 | 0.82 | 3.02 | 14354 | 712 | 5 | 92 | 6 | 0 | 6722 | logfile |
✔ | 7RZV | 24779 | 2023-02-16 | 2021-08-27 | 2.11 | 2.24 | — | 2.0 | 0.005 | 0.35 | 0.0 | 0.03 | 14.68 | 0.00 | 2.348 | 5.44 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.79 | 0.80 | 2.21 | 2.0 | 0.004 | 0.37 | 0.0 | 0.03 | 15.99 | 0.00 | 2.228 | 4.86 | 0.67 | 0.0 | 100.0 | 0.0 | 5.66 | 0.87 | 0.83 | 0.83 | 1.88 | 2562 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oG3 | 20051 | 2023-02-16 | 2019-04-01 | 4.1 | 5.37 | — | 6.5 | 0.005 | 1.53 | 0.0 | 0.00 | 0.93 | 0.00 | 2.539 | 0.00 | 0.00 | 0.0 | 99.2 | 0.8 | 0.27 | 0.46 | 0.48 | — | 6.0 | 0.005 | 1.11 | 0.0 | 0.00 | 8.01 | 0.00 | 2.615 | 51.00 | 0.00 | 13.0 | 87.0 | 0.0 | -1.64 | 2.16 | 0.67 | 0.87 | — | 1215 | 396 | 4 | 0 | 9 | 0 | 0 | logfile |
✔ | 6U5o | 20651 | 2023-02-25 | 2019-08-28 | 3.7 | 3.81 | — | 3.8 | 0.005 | 0.78 | 0.0 | 0.04 | 14.70 | 0.01 | 2.093 | 5.81 | 0.00 | 0.0 | 100.0 | 0.0 | -4.22 | 0.65 | 0.75 | 1.93 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 16.90 | 0.00 | 1.877 | 10.11 | 0.21 | 8.1 | 91.9 | 0.0 | -1.12 | 1.52 | 0.66 | 0.79 | 2.07 | 26316 | 1623 | 5 | 0 | 0 | 0 | 13339 | logfile |
✔ | 7QiM | 13990 | 2023-02-21 | 2021-12-15 | 4.5 | 3.91 | 4.55 | 4.3 | 0.010 | 1.34 | 0.0 | 0.06 | 16.27 | 0.01 | 1.508 | 18.67 | 0.00 | 0.0 | 100.0 | 0.0 | -2.74 | 0.59 | 0.72 | — | 4.2 | 0.003 | 0.81 | 0.0 | 0.04 | 14.06 | 0.00 | 1.971 | 18.08 | 0.00 | 3.9 | 96.1 | 0.0 | -0.81 | 2.11 | 0.59 | 0.73 | — | 15550 | 1860 | 12 | 0 | 180 | 0 | 0 | logfile |
✔ | 7R6M | 24282 | 2023-02-18 | 2021-06-22 | 3.68 | 3.27 | — | 3.4 | 0.006 | 0.94 | 0.0 | 0.04 | 17.86 | 0.01 | 2.005 | 4.72 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.53 | 0.72 | — | 3.4 | 0.007 | 0.85 | 0.0 | 0.04 | 18.31 | 0.01 | 1.758 | 16.73 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.19 | 0.53 | 0.72 | — | 7755 | 0 | 3 | 362 | 13 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2023-02-17 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.88 | 0.0 | 0.04 | 22.84 | 0.01 | 1.820 | 82.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.78 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 6X64 | 22069 | 2023-02-21 | 2020-05-27 | 3.7 | 4.01 | — | 3.7 | 0.008 | 1.34 | 0.0 | 0.05 | 9.32 | 0.01 | 2.584 | 0.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.84 | — | 3.7 | 0.009 | 1.23 | 0.0 | 0.05 | 5.42 | 0.00 | 2.111 | 10.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.35 | 0.69 | 0.86 | — | 15840 | 0 | 36 | 0 | 3168 | 0 | 0 | logfile |
✔ | 6K9F | 9948 | 2023-02-22 | 2019-06-15 | 3.7 | 7.50 | 4.15 | 7.2 | 0.002 | 0.45 | 0.0 | 0.03 | 11.87 | 0.00 | 2.356 | 5.29 | 0.00 | 0.0 | 100.0 | 0.0 | -0.68 | 0.66 | 0.76 | 0.04 | 4.6 | 0.004 | 1.22 | 0.0 | 0.05 | 17.69 | 0.00 | 2.013 | 28.27 | 0.53 | 1.4 | 98.6 | 0.0 | -0.68 | 3.70 | 0.67 | 0.84 | 0.35 | 8484 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6A7F | 6993 | 2023-02-19 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 17.78 | 0.00 | 2.148 | 14.92 | 0.41 | 0.7 | 99.3 | 0.0 | 1.97 | 2.06 | 0.60 | 0.86 | -0.08 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oDJ | 20021 | 2023-02-25 | 2019-03-26 | 3.5 | 3.75 | — | 3.7 | 0.009 | 1.50 | 0.0 | 0.07 | 11.32 | 0.01 | 2.438 | 2.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.81 | — | 3.7 | 0.012 | 1.73 | 0.0 | 0.06 | 7.96 | 0.00 | 2.090 | 10.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.82 | 0.83 | — | 25415 | 0 | 17 | 0 | 5083 | 0 | 0 | logfile |
✔ | 7LYS | 23600 | 2023-02-21 | 2021-03-08 | 3.05 | 2.55 | 3.08 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 17.65 | 0.00 | 1.976 | 5.82 | 0.17 | 0.0 | 100.0 | 0.0 | -1.46 | 0.83 | 0.83 | 2.05 | 3.1 | 0.003 | 0.55 | 0.0 | 0.04 | 18.37 | 0.00 | 1.996 | 6.26 | 0.00 | 3.6 | 96.4 | 0.0 | 1.10 | 0.36 | 0.83 | 0.84 | 2.10 | 13573 | 669 | 4 | 89 | 0 | 0 | 6374 | logfile |
✔ | 7PM3 | 13511 | 2023-02-18 | 2021-09-01 | 3.1 | 3.07 | 3.12 | 3.1 | 0.025 | 2.31 | 0.0 | 0.07 | 17.19 | 0.01 | 2.019 | 5.42 | 0.00 | 0.0 | 100.0 | 0.0 | -0.98 | 0.85 | 0.82 | 3.08 | 3.1 | 0.003 | 1.25 | 0.0 | 0.04 | 16.77 | 0.00 | 2.048 | 9.49 | 0.11 | 1.9 | 98.1 | 0.0 | 1.15 | 1.72 | 0.87 | 0.86 | 2.30 | 8940 | 1113 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6X5i | 22051 | 2023-02-18 | 2020-05-26 | 4.3 | 4.27 | — | 4.0 | 0.060 | 2.79 | 210.0 | 0.16 | 29.93 | 0.00 | 2.206 | 29.57 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.70 | — | 4.0 | 0.011 | 1.53 | 210.0 | 0.13 | 24.62 | 0.00 | 1.571 | 57.36 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.30 | 0.69 | 0.74 | — | 4480 | 70 | 70 | 0 | 280 | 0 | 0 | logfile |
✔ | 8CZi | 27098 | 2023-02-16 | 2022-05-24 | 2.22 | 2.26 | 2.61 | 2.0 | 0.004 | 0.33 | 0.0 | 0.03 | 14.48 | 0.00 | 2.382 | 6.62 | 0.00 | 0.0 | 100.0 | 0.0 | 2.90 | 0.78 | 0.80 | 1.97 | 2.0 | 0.004 | 0.39 | 0.0 | 0.03 | 15.18 | 0.00 | 2.140 | 5.65 | 0.34 | 0.0 | 100.0 | 0.0 | 5.55 | 0.85 | 0.83 | 0.84 | 1.84 | 2550 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |