Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RX5	24725	2023-08-11	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.003	0.35	0.0	0.03	13.46	0.00	2.257	6.36	0.00	0.0	100.0	0.0	5.01	0.27	0.71	0.88	2.75	9120	1160	40	0	0	0	0	logfile
✔	8EHR	28150	2023-08-10	2022-09-14	3.2	2.95	3.03	3.1	0.003	0.55	0.0	0.05	13.08	0.00	2.374	2.29	0.00	0.0	100.0	0.0	1.82	0.58	0.85	3.24	3.1	0.002	0.48	0.0	0.04	15.23	0.00	2.320	4.65	0.37	0.9	99.1	0.0	1.26	1.17	0.58	0.87	3.27	7350	1022	7	0	0	0	0	logfile
✔	8B3A	15824	2023-08-09	2022-09-16	3.8	3.66	2.91	4.1	0.009	1.89	0.0	0.10	27.06	0.09	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.077	6.38	29.0	0.43	20.27	0.05	1.653	309.17	6.67	46.7	8.0	45.3	-10.71	2.72	0.41	0.54	3.39	2010	210	30	0	60	0	0	logfile
✔	7TD6	25824	2023-08-09	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.005	0.89	0.0	0.05	18.65	0.00	2.234	13.38	3.53	9.9	90.1	0.0	-4.01	1.10	0.43	0.78	3.81	5575	690	5	0	0	0	0	logfile
✔	7PM3	13511	2023-08-11	2021-09-01	3.1	3.07	3.12	3.1	0.025	2.31	0.0	0.07	17.19	0.01	2.019	5.42	0.00	0.0	100.0	0.0	-0.98	0.85	0.82	3.08	3.1	0.003	1.25	0.0	0.04	16.77	0.00	2.048	9.49	0.11	1.9	98.1	0.0	1.15	1.72	0.87	0.86	2.30	8940	1113	6	0	12	0	0	logfile
✔	7SAM	24952	2023-08-09	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7URi	26713	2023-08-09	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	8CL1	16709	2023-08-14	2023-02-16	3.35	3.67	2.87	3.6	0.008	0.93	0.0	0.06	12.18	0.01	0.393	14.11	0.54	0.0	99.1	0.9	-1.05	0.61	0.75	3.54	3.7	0.003	0.59	0.0	0.04	15.11	0.01	2.263	10.87	0.18	1.8	97.7	0.5	2.09	0.67	0.64	0.77	3.02	10494	1362	12	0	0	0	0	logfile
✔	6o1o	0454	2023-08-14	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.013	1.77	0.0	0.07	13.79	0.00	1.993	31.58	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	8CKW	16704	2023-08-13	2023-02-16	3.12	3.53	3.07	3.4	0.005	0.87	0.0	0.08	12.55	0.01	0.523	4.81	0.00	0.0	100.0	0.0	-0.70	0.57	0.82	3.51	3.4	0.003	0.62	0.0	0.04	17.24	0.00	2.211	11.20	0.27	1.1	98.9	0.0	1.42	1.20	0.58	0.85	1.95	13890	1785	15	0	0	0	0	logfile
✔	6oDJ	20021	2023-08-18	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.73	0.0	0.06	7.96	0.00	2.090	10.56	0.00	0.0	0.0	0.0	—	0.60	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	8BFB	16019	2023-08-09	2022-10-24	3.2	3.13	3.01	3.2	0.003	0.44	0.0	0.06	13.91	0.00	2.552	9.16	0.00	0.0	100.0	0.0	-3.20	0.49	0.83	5.20	3.2	0.008	0.62	0.0	0.05	17.53	0.00	2.364	6.10	0.00	2.8	97.2	0.0	-3.12	1.03	0.52	0.86	7.13	2860	380	10	0	0	0	0	logfile
✔	7Q66	13853	2023-08-09	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.004	0.75	0.0	0.04	16.09	0.00	2.208	12.61	6.92	0.8	99.2	0.0	-4.23	0.65	0.62	0.88	4.75	4807	682	22	0	0	0	0	logfile
✔	8CL4	16712	2023-08-16	2023-02-16	3.14	3.69	3.44	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.53	0.78	2.49	3.6	0.003	0.68	0.0	0.04	16.83	0.00	2.207	10.69	0.14	1.7	98.3	0.0	1.32	2.42	0.55	0.82	1.20	13335	1725	15	0	0	0	0	logfile
✔	7URM	26714	2023-08-09	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.87	0.01	1.983	29.94	0.00	0.0	0.0	0.0	—	1.70	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	7LQF	23484	2023-08-09	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.37	244.0	0.42	26.01	0.03	1.685	217.72	5.21	66.8	30.1	3.1	-9.48	1.76	0.69	0.86	2.78	5376	512	64	0	0	0	0	logfile
✔	6oEH	20020	2023-08-22	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.7	0.007	1.05	0.0	0.04	5.09	0.00	2.203	12.28	0.00	0.0	0.0	0.0	—	0.52	0.40	0.80	—	32900	0	14	0	6580	0	0	logfile
✔	7RX4	24724	2023-08-13	2021-08-21	3.8	3.99	—	4.0	0.003	0.49	0.0	0.04	13.38	0.00	1.928	12.86	0.00	0.0	100.0	0.0	6.26	0.60	0.78	1.41	3.9	0.003	0.51	0.0	0.04	16.36	0.00	2.337	5.07	1.27	0.0	100.0	0.0	6.07	0.49	0.62	0.80	0.89	13560	1740	60	0	0	0	0	logfile
✔	6X5i	22051	2023-08-10	2020-05-26	4.3	4.27	—	4.0	0.060	2.79	0.0	0.16	29.93	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.011	1.53	0.0	0.13	24.62	0.00	1.571	57.36	0.00	0.0	0.0	0.0	—	3.30	0.69	0.74	—	4480	70	70	0	280	0	0	logfile
✔	6UES	20755	2023-08-09	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.14	0.01	1.785	36.43	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile

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