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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LQE | 23483 | 2023-02-17 | 2021-02-13 | 3.4 | 3.06 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.423 | 23.27 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.57 | 0.80 | 5.06 | 3.2 | 0.151 | 5.20 | 240.0 | 0.38 | 25.46 | 0.02 | 1.745 | 134.94 | 4.40 | 60.8 | 38.2 | 1.0 | -8.67 | 1.67 | 0.65 | 0.89 | 2.25 | 6048 | 576 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PBW | 13307 | 2023-02-19 | 2021-08-02 | 2.1 | 1.98 | — | 2.1 | 0.009 | 0.99 | 0.0 | 0.05 | 12.27 | 0.01 | 2.243 | 2.93 | 0.00 | 0.0 | 100.0 | 0.0 | 3.14 | 0.78 | 0.90 | 7.90 | 2.1 | 0.004 | 0.76 | 0.0 | 0.04 | 14.47 | 0.01 | 2.150 | 7.99 | 0.00 | 0.0 | 100.0 | 0.0 | 4.46 | 0.28 | 0.77 | 0.90 | 7.32 | 9500 | 873 | 54 | 0 | 81 | 230 | 0 | logfile |
✔ | 7R6L | 24281 | 2023-02-18 | 2021-06-22 | 2.85 | 3.04 | — | 3.0 | 0.008 | 0.89 | 0.0 | 0.05 | 16.80 | 0.01 | 1.985 | 4.24 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.67 | 0.86 | — | 3.0 | 0.006 | 0.73 | 0.0 | 0.04 | 16.40 | 0.01 | 1.882 | 7.54 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.09 | 0.62 | 0.86 | — | 7857 | 0 | 3 | 366 | 20 | 0 | 0 | logfile |
✔ | 7R6M | 24282 | 2023-02-18 | 2021-06-22 | 3.68 | 3.27 | — | 3.4 | 0.006 | 0.94 | 0.0 | 0.04 | 17.86 | 0.01 | 2.005 | 4.72 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.53 | 0.72 | — | 3.4 | 0.007 | 0.85 | 0.0 | 0.04 | 18.31 | 0.01 | 1.758 | 16.73 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.19 | 0.53 | 0.72 | — | 7755 | 0 | 3 | 362 | 13 | 0 | 0 | logfile |
✔ | 6K9F | 9948 | 2023-02-22 | 2019-06-15 | 3.7 | 7.50 | 4.15 | 7.2 | 0.002 | 0.45 | 0.0 | 0.03 | 11.87 | 0.00 | 2.356 | 5.29 | 0.00 | 0.0 | 100.0 | 0.0 | -0.68 | 0.66 | 0.76 | 0.04 | 4.6 | 0.004 | 1.22 | 0.0 | 0.05 | 17.69 | 0.00 | 2.013 | 28.27 | 0.53 | 1.4 | 98.6 | 0.0 | -0.68 | 3.70 | 0.67 | 0.84 | 0.35 | 8484 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2023-02-17 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.88 | 0.0 | 0.04 | 22.84 | 0.01 | 1.820 | 82.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.78 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 7ZFW | 14704 | 2023-02-20 | 2022-04-01 | 3.8 | 4.62 | 3.46 | 3.0 | 0.006 | 0.83 | 0.0 | 0.05 | 17.92 | 0.03 | 2.266 | 2.77 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.32 | 0.81 | — | 3.0 | 0.009 | 0.90 | 0.0 | 0.04 | 20.26 | 0.01 | 1.952 | 38.01 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.55 | 0.33 | 0.85 | — | 13188 | 0 | 1 | 615 | 0 | 0 | 0 | logfile |
✔ | 6LHW | 0901 | 2023-02-21 | 2019-12-10 | 4.84 | 5.29 | — | 4.6 | 0.008 | 1.37 | 1.0 | 0.05 | 5.28 | 0.00 | 1.530 | 14.43 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.64 | 0.56 | — | 4.6 | 0.008 | 1.29 | 0.0 | 0.04 | 6.56 | 0.00 | 2.027 | 44.00 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.20 | 0.83 | 0.64 | — | 7644 | 0 | 3 | 0 | 1541 | 0 | 0 | logfile |
✔ | 6o1o | 0454 | 2023-02-21 | 2019-02-21 | 3.8 | 4.00 | — | 3.6 | 0.008 | 1.55 | 0.0 | 0.07 | 15.00 | 0.01 | 2.295 | 4.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.72 | 0.70 | — | 3.6 | 0.013 | 1.77 | 0.0 | 0.07 | 13.79 | 0.00 | 1.993 | 31.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.78 | 0.76 | — | 15193 | 0 | 14 | 66 | 2757 | 0 | 0 | logfile |
✔ | 7LYS | 23600 | 2023-02-21 | 2021-03-08 | 3.05 | 2.55 | 3.08 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 17.65 | 0.00 | 1.976 | 5.82 | 0.17 | 0.0 | 100.0 | 0.0 | -1.46 | 0.83 | 0.83 | 2.05 | 3.1 | 0.003 | 0.55 | 0.0 | 0.04 | 18.37 | 0.00 | 1.996 | 6.26 | 0.00 | 3.6 | 96.4 | 0.0 | 1.10 | 0.36 | 0.83 | 0.84 | 2.10 | 13573 | 669 | 4 | 89 | 0 | 0 | 6374 | logfile |
✔ | 6oG3 | 20051 | 2023-02-16 | 2019-04-01 | 4.1 | 5.37 | — | 6.5 | 0.005 | 1.53 | 0.0 | 0.00 | 0.93 | 0.00 | 2.539 | 0.00 | 0.00 | 0.0 | 99.2 | 0.8 | 0.27 | 0.46 | 0.48 | — | 6.0 | 0.005 | 1.11 | 0.0 | 0.00 | 8.01 | 0.00 | 2.615 | 51.00 | 0.00 | 13.0 | 87.0 | 0.0 | -1.64 | 2.16 | 0.67 | 0.87 | — | 1215 | 396 | 4 | 0 | 9 | 0 | 0 | logfile |
✔ | 6U5o | 20651 | 2023-02-25 | 2019-08-28 | 3.7 | 3.81 | — | 3.8 | 0.005 | 0.78 | 0.0 | 0.04 | 14.70 | 0.01 | 2.093 | 5.81 | 0.00 | 0.0 | 100.0 | 0.0 | -4.22 | 0.65 | 0.75 | 1.93 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 16.90 | 0.00 | 1.877 | 10.11 | 0.21 | 8.1 | 91.9 | 0.0 | -1.12 | 1.52 | 0.66 | 0.79 | 2.07 | 26316 | 1623 | 5 | 0 | 0 | 0 | 13339 | logfile |
✔ | 6X5i | 22051 | 2023-02-18 | 2020-05-26 | 4.3 | 4.27 | — | 4.0 | 0.060 | 2.79 | 210.0 | 0.16 | 29.93 | 0.00 | 2.206 | 29.57 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.70 | — | 4.0 | 0.011 | 1.53 | 210.0 | 0.13 | 24.62 | 0.00 | 1.571 | 57.36 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.30 | 0.69 | 0.74 | — | 4480 | 70 | 70 | 0 | 280 | 0 | 0 | logfile |
✔ | 7PTQ | 13633 | 2023-02-22 | 2021-09-27 | 4.08 | 6.47 | 4.22 | 4.0 | 0.005 | 0.78 | 0.0 | 0.04 | 15.27 | 0.00 | 1.983 | 0.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.80 | — | 4.0 | 0.006 | 0.67 | 0.0 | 0.04 | 19.44 | 0.00 | 1.852 | 43.48 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.75 | 0.96 | 0.94 | — | 17434 | 0 | 1 | 544 | 0 | 0 | 5847 | logfile |
✔ | 7URi | 26713 | 2023-02-16 | 2022-04-22 | 2.6 | 2.67 | 2.95 | 2.6 | 0.009 | 1.37 | 0.0 | 0.12 | 25.77 | 0.01 | 2.201 | 7.31 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.05 | 0.34 | — | 2.6 | 0.008 | 1.44 | 0.0 | 0.07 | 23.84 | 0.01 | 2.072 | 23.68 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.06 | 0.08 | 0.38 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✔ | 6X64 | 22069 | 2023-02-21 | 2020-05-27 | 3.7 | 4.01 | — | 3.7 | 0.008 | 1.34 | 0.0 | 0.05 | 9.32 | 0.01 | 2.584 | 0.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.84 | — | 3.7 | 0.009 | 1.23 | 0.0 | 0.05 | 5.42 | 0.00 | 2.111 | 10.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.35 | 0.69 | 0.86 | — | 15840 | 0 | 36 | 0 | 3168 | 0 | 0 | logfile |
✔ | 7U2B | 26311 | 2023-02-18 | 2022-02-23 | 4.1 | 4.26 | — | 4.2 | 0.009 | 0.96 | 0.0 | 0.05 | 14.98 | 0.00 | 1.936 | 7.07 | 0.15 | 0.1 | 99.9 | 0.0 | 2.20 | 0.72 | 0.71 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 15.43 | 0.00 | 2.153 | 10.28 | 0.00 | 1.8 | 98.2 | 0.0 | 0.53 | 1.44 | 0.78 | 0.80 | — | 7316 | 780 | 5 | 53 | 2 | 0 | 0 | logfile |
✔ | 7EEi | 31077 | 2023-02-19 | 2021-03-18 | 3.6 | 3.44 | — | 3.4 | 0.006 | 1.09 | 0.0 | 0.06 | 13.71 | 0.01 | 1.975 | 5.03 | 0.00 | 0.1 | 99.9 | 0.0 | -1.90 | 0.77 | 0.77 | 1.99 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 15.23 | 0.00 | 2.159 | 7.84 | 0.12 | 5.2 | 94.8 | 0.0 | -0.01 | 1.24 | 0.80 | 0.80 | 2.19 | 9825 | 1400 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PoS | 20418 | 2023-02-21 | 2019-07-05 | 4.12 | 4.39 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 11.58 | 0.01 | 2.116 | 2.48 | 0.00 | 0.1 | 99.9 | 0.0 | -2.43 | 0.80 | 0.77 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 13.00 | 0.00 | 1.937 | 10.02 | 0.03 | 3.3 | 96.7 | 0.0 | -0.01 | 1.03 | 0.82 | 0.80 | — | 53503 | 3425 | 20 | 0 | 13 | 0 | 26853 | logfile |
✔ | 7PLU | 13502 | 2023-02-24 | 2021-09-01 | 3.2 | 3.11 | 3.17 | 3.0 | 0.005 | 0.85 | 7.0 | 0.05 | 14.66 | 0.01 | 1.314 | 5.25 | 0.04 | 0.1 | 99.9 | 0.0 | -1.57 | 0.89 | 0.82 | 3.39 | 3.0 | 0.005 | 0.67 | 3.0 | 0.04 | 15.81 | 0.00 | 1.852 | 8.62 | 0.20 | 1.6 | 98.4 | 0.0 | 1.12 | 1.28 | 0.91 | 0.87 | 2.60 | 23288 | 2906 | 13 | 0 | 9 | 0 | 0 | logfile |