Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LQE	23483	2023-02-17	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.151	5.20	240.0	0.38	25.46	0.02	1.745	134.94	4.40	60.8	38.2	1.0	-8.67	1.67	0.65	0.89	2.25	6048	576	72	0	0	0	0	logfile
✔	7PBW	13307	2023-02-19	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	7R6L	24281	2023-02-18	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.73	0.0	0.04	16.40	0.01	1.882	7.54	0.00	0.0	0.0	0.0	—	0.09	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7R6M	24282	2023-02-18	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	17.86	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	18.31	0.01	1.758	16.73	0.00	0.0	0.0	0.0	—	0.19	0.53	0.72	—	7755	0	3	362	13	0	0	logfile
✔	6K9F	9948	2023-02-22	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.6	0.004	1.22	0.0	0.05	17.69	0.00	2.013	28.27	0.53	1.4	98.6	0.0	-0.68	3.70	0.67	0.84	0.35	8484	1044	12	0	0	0	0	logfile
✔	7SAM	24952	2023-02-17	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7ZFW	14704	2023-02-20	2022-04-01	3.8	4.62	3.46	3.0	0.006	0.83	0.0	0.05	17.92	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.0	0.009	0.90	0.0	0.04	20.26	0.01	1.952	38.01	0.00	0.0	0.0	0.0	—	2.55	0.33	0.85	—	13188	0	1	615	0	0	0	logfile
✔	6LHW	0901	2023-02-21	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.027	44.00	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	6o1o	0454	2023-02-21	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.013	1.77	0.0	0.07	13.79	0.00	1.993	31.58	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	7LYS	23600	2023-02-21	2021-03-08	3.05	2.55	3.08	3.1	0.003	0.54	0.0	0.04	17.65	0.00	1.976	5.82	0.17	0.0	100.0	0.0	-1.46	0.83	0.83	2.05	3.1	0.003	0.55	0.0	0.04	18.37	0.00	1.996	6.26	0.00	3.6	96.4	0.0	1.10	0.36	0.83	0.84	2.10	13573	669	4	89	0	0	6374	logfile
✔	6oG3	20051	2023-02-16	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.11	0.0	0.00	8.01	0.00	2.615	51.00	0.00	13.0	87.0	0.0	-1.64	2.16	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	6U5o	20651	2023-02-25	2019-08-28	3.7	3.81	—	3.8	0.005	0.78	0.0	0.04	14.70	0.01	2.093	5.81	0.00	0.0	100.0	0.0	-4.22	0.65	0.75	1.93	3.8	0.004	0.65	0.0	0.04	16.90	0.00	1.877	10.11	0.21	8.1	91.9	0.0	-1.12	1.52	0.66	0.79	2.07	26316	1623	5	0	0	0	13339	logfile
✔	6X5i	22051	2023-02-18	2020-05-26	4.3	4.27	—	4.0	0.060	2.79	210.0	0.16	29.93	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.011	1.53	210.0	0.13	24.62	0.00	1.571	57.36	0.00	0.0	0.0	0.0	—	3.30	0.69	0.74	—	4480	70	70	0	280	0	0	logfile
✔	7PTQ	13633	2023-02-22	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	15.27	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.67	0.0	0.04	19.44	0.00	1.852	43.48	0.00	0.0	0.0	0.0	—	2.75	0.96	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	7URi	26713	2023-02-16	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	6X64	22069	2023-02-21	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.35	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7U2B	26311	2023-02-18	2022-02-23	4.1	4.26	—	4.2	0.009	0.96	0.0	0.05	14.98	0.00	1.936	7.07	0.15	0.1	99.9	0.0	2.20	0.72	0.71	—	4.2	0.003	0.62	0.0	0.04	15.43	0.00	2.153	10.28	0.00	1.8	98.2	0.0	0.53	1.44	0.78	0.80	—	7316	780	5	53	2	0	0	logfile
✔	7EEi	31077	2023-02-19	2021-03-18	3.6	3.44	—	3.4	0.006	1.09	0.0	0.06	13.71	0.01	1.975	5.03	0.00	0.1	99.9	0.0	-1.90	0.77	0.77	1.99	3.4	0.003	0.65	0.0	0.04	15.23	0.00	2.159	7.84	0.12	5.2	94.8	0.0	-0.01	1.24	0.80	0.80	2.19	9825	1400	1	0	0	0	0	logfile
✔	6PoS	20418	2023-02-21	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.48	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.002	0.55	0.0	0.04	13.00	0.00	1.937	10.02	0.03	3.3	96.7	0.0	-0.01	1.03	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	7PLU	13502	2023-02-24	2021-09-01	3.2	3.11	3.17	3.0	0.005	0.85	7.0	0.05	14.66	0.01	1.314	5.25	0.04	0.1	99.9	0.0	-1.57	0.89	0.82	3.39	3.0	0.005	0.67	3.0	0.04	15.81	0.00	1.852	8.62	0.20	1.6	98.4	0.0	1.12	1.28	0.91	0.87	2.60	23288	2906	13	0	9	0	0	logfile

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