Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PMG	13532	2022-07-03	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.18	3.0	0.07	15.14	0.01	1.308	4.74	0.09	0.2	99.8	0.0	-1.37	0.92	0.85	3.45	3.3	0.003	0.65	1.0	0.04	15.29	0.00	1.962	6.37	0.09	1.5	98.5	0.0	1.63	1.26	0.94	0.89	2.83	10189	1264	6	0	6	0	0	logfile
✔	7PML	13538	2022-07-03	2021-09-02	3.3	4.18	3.26	3.2	0.005	0.86	2.0	0.05	15.39	0.01	1.315	4.10	0.09	0.2	99.8	0.0	-1.35	0.91	0.83	2.88	3.3	0.002	0.65	1.0	0.04	15.82	0.00	1.990	6.97	0.00	1.2	98.8	0.0	1.88	0.71	0.94	0.88	2.35	10189	1264	6	0	6	0	0	logfile
✔	7PLX	13505	2022-07-03	2021-09-01	3.6	4.05	3.55	3.5	0.005	0.83	2.0	0.05	14.88	0.01	1.321	6.00	0.00	0.2	99.8	0.0	-1.17	0.90	0.81	3.07	3.5	0.003	0.68	1.0	0.04	15.48	0.00	2.002	9.77	0.00	1.8	98.2	0.0	1.65	1.32	0.91	0.85	2.64	10139	1263	5	0	3	0	0	logfile
✔	6PP8	20422	2022-07-06	2019-07-05	4.12	4.53	—	4.3	0.003	0.72	0.0	0.04	12.10	0.01	2.116	2.93	0.00	0.2	99.8	0.0	-2.36	0.80	0.76	—	4.3	0.004	0.60	0.0	0.04	12.82	0.00	1.973	9.51	0.00	4.1	95.9	0.0	-0.71	0.96	0.82	0.80	—	32335	2078	13	0	13	0	16234	logfile
✔	7M5o	23678	2022-07-03	2021-03-24	3.54	2.81	3.58	3.6	0.003	0.54	0.0	0.04	15.95	0.00	1.978	10.82	1.25	0.2	99.8	0.0	-2.03	0.79	0.75	1.08	3.6	0.003	0.62	0.0	0.04	17.38	0.01	1.998	13.05	0.89	4.0	96.0	0.0	0.30	1.24	0.79	0.76	1.37	11648	655	3	37	1	0	5635	logfile
✔	6XLA	22237	2022-07-03	2020-06-28	3.1	3.41	—	3.3	0.005	0.65	0.0	0.04	19.84	0.00	2.276	3.56	0.00	0.2	99.8	0.0	-2.59	0.78	0.84	3.37	3.3	0.003	0.54	0.0	0.04	20.69	0.00	2.128	4.91	0.41	3.0	97.0	0.0	-0.29	1.32	0.79	0.86	3.00	5403	536	6	46	2	0	0	logfile
✔	6ZVJ	11458	2022-07-04	2020-07-24	3.8	3.00	—	3.1	0.010	1.33	7.0	0.07	17.39	0.01	1.731	5.51	1.39	0.2	99.8	0.0	-4.19	0.59	0.64	1.31	2.9	0.006	0.76	0.0	0.04	17.34	0.01	1.939	14.10	0.18	5.3	94.7	0.0	-1.02	1.66	0.67	0.75	0.95	115020	10127	55	1720	9	0	0	logfile
✘	7PM2	13510	2022-07-03	2021-09-01	3.6	3.83	3.61	3.6	0.004	0.83	0.0	0.05	15.46	0.01	1.201	4.80	0.00	0.2	99.8	0.0	-1.45	0.89	0.84	2.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10156	1259	3	0	4	0	0	logfile
✔	7PMA	13526	2022-07-03	2021-09-02	3.6	4.07	3.61	3.5	0.004	0.88	2.0	0.05	15.79	0.01	1.317	6.60	0.09	0.2	99.8	0.0	-1.07	0.90	0.82	2.92	3.5	0.003	0.71	1.0	0.04	15.44	0.00	1.997	9.60	0.19	1.9	98.1	0.0	1.65	1.29	0.91	0.85	2.39	10066	1249	6	0	5	0	0	logfile
✔	7PMC	13528	2022-07-03	2021-09-02	3.7	4.09	3.62	3.5	0.008	1.07	2.0	0.06	16.10	0.01	1.317	7.15	0.09	0.2	99.8	0.0	-1.41	0.89	0.80	2.38	3.5	0.003	0.69	1.0	0.04	16.05	0.00	2.034	10.02	0.28	1.6	98.4	0.0	1.51	1.34	0.90	0.82	1.87	10139	1258	6	0	5	0	0	logfile
✘	7PM1	13509	2022-07-03	2021-09-01	3.5	3.74	3.64	3.5	0.004	0.80	0.0	0.05	14.86	0.01	1.201	5.09	0.00	0.2	99.8	0.0	-1.54	0.89	0.84	3.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10169	1261	3	0	4	0	0	logfile
✔	7PMB	13527	2022-07-03	2021-09-02	3.6	4.10	3.61	3.6	0.006	0.93	2.0	0.06	15.71	0.01	1.317	6.62	0.09	0.2	99.8	0.0	-1.25	0.90	0.83	2.52	3.7	0.003	0.70	1.0	0.04	16.29	0.00	1.973	9.15	0.00	2.1	97.9	0.0	1.44	1.32	0.90	0.85	2.24	10113	1255	6	0	5	0	0	logfile
✘	7PLY	13506	2022-07-03	2021-09-01	3.2	3.79	3.36	3.5	0.010	0.94	0.0	0.06	14.60	0.01	1.199	3.87	0.00	0.2	99.8	0.0	-1.06	0.89	0.85	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10149	1258	4	0	4	0	0	logfile
✔	7PMD	13529	2022-07-03	2021-09-02	2.9	4.01	2.83	3.4	0.012	1.06	2.0	0.06	14.82	0.01	1.314	3.76	0.09	0.2	99.8	0.0	-1.33	0.94	0.88	3.40	3.4	0.002	0.66	1.0	0.04	15.37	0.00	2.012	6.92	0.55	1.9	98.1	0.0	1.80	1.26	0.93	0.87	2.98	10189	1264	6	0	6	0	0	logfile
✘	7PM0	13508	2022-07-03	2021-09-01	3.6	3.89	3.65	3.6	0.005	0.83	0.0	0.05	14.98	0.01	1.200	5.05	0.00	0.2	99.8	0.0	-1.27	0.90	0.85	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10169	1261	3	0	4	0	0	logfile
✔	7PM9	13525	2022-07-03	2021-09-02	3.7	4.22	3.68	3.6	0.005	0.93	2.0	0.05	16.03	0.01	1.316	7.19	0.09	0.2	99.8	0.0	-1.87	0.90	0.80	2.23	3.6	0.003	0.71	1.0	0.04	16.07	0.00	1.935	11.38	0.09	2.0	98.0	0.0	1.41	1.74	0.91	0.84	1.90	10086	1252	6	0	5	0	0	logfile
✔	6MDo	9102	2022-07-07	2018-09-04	3.9	5.46	—	4.2	0.015	1.44	0.0	0.12	13.30	0.01	2.012	6.72	0.16	0.3	99.6	0.0	-3.28	0.79	0.68	0.38	4.2	0.005	0.72	0.0	0.08	13.76	0.00	1.781	20.24	0.41	7.9	92.1	0.0	-1.53	1.53	0.87	0.85	0.19	45373	2843	13	0	11	0	22858	logfile
✘	7BES	12158	2022-07-03	2020-12-24	2.85	2.95	2.86	2.9	0.009	0.77	0.0	0.05	9.87	0.00	1.249	7.96	0.85	0.3	99.7	0.0	0.37	0.73	0.82	3.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9446	1234	12	6	4	0	0	logfile
✔	6C9i	7436	2022-07-05	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	1.04	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.47	0.0	0.04	15.04	0.00	2.229	5.61	0.12	0.0	100.0	0.0	3.66	2.42	0.73	0.90	3.62	23700	3087	24	0	0	0	0	logfile
✔	6T90	10406	2022-07-03	2019-10-25	3.05	3.74	—	3.3	0.022	1.52	0.0	0.09	24.61	0.01	2.459	0.67	0.00	0.3	99.7	0.0	1.02	0.84	0.81	4.34	3.3	0.004	0.61	0.0	0.03	26.52	0.00	2.069	8.40	0.26	1.8	98.2	0.0	2.78	2.93	0.86	0.87	2.61	13031	903	19	282	9	0	0	logfile

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