Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WiJ	32531	2023-04-22	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	6Po3	20408	2023-04-19	2019-07-03	4.28	4.38	—	4.3	0.003	0.65	0.0	0.04	11.03	0.00	2.179	2.53	0.00	0.4	99.6	0.0	-1.68	0.75	0.75	—	4.3	0.003	0.55	0.0	0.04	13.05	0.00	1.942	9.70	0.04	3.5	96.5	0.0	0.04	2.55	0.79	0.79	—	53225	3406	20	0	12	0	26724	logfile
✔	7ooA	13008	2023-04-23	2021-05-27	2.7	2.63	2.63	2.6	0.005	0.66	0.0	0.05	15.27	0.00	2.256	5.81	0.00	0.4	99.6	0.0	2.71	0.71	0.86	4.30	2.6	0.003	0.47	0.0	0.04	16.81	0.00	2.229	5.62	0.81	1.2	98.8	0.0	1.78	1.11	0.70	0.88	3.88	15610	1834	14	0	35	0	0	logfile
✔	7KEJ	22839	2023-04-23	2020-10-11	3.8	3.55	—	3.6	0.021	1.73	0.0	0.11	10.03	0.01	1.201	0.59	0.00	0.4	99.6	0.0	1.20	0.82	0.84	4.49	3.6	0.003	0.64	0.0	0.04	14.71	0.00	2.126	6.60	0.41	2.0	98.0	0.0	0.01	1.66	0.82	0.83	3.57	13806	1740	18	0	24	0	0	logfile
✔	7SN3	25210	2023-04-28	2021-10-27	3.1	3.31	—	3.2	0.009	1.11	4.0	0.07	13.91	0.01	1.922	5.26	0.10	0.4	99.3	0.3	-0.84	0.75	0.82	3.32	3.2	0.004	0.66	0.0	0.05	14.83	0.00	2.126	8.24	0.24	4.5	95.4	0.1	0.17	0.95	0.76	0.87	2.93	27447	3451	15	0	54	0	0	logfile
✔	8EET	28057	2023-04-19	2022-09-07	3.1	3.36	3.21	3.4	0.007	0.92	0.0	0.06	12.28	0.00	0.312	9.93	1.07	0.5	99.5	0.0	1.87	0.72	0.82	3.55	3.4	0.037	2.69	0.0	0.32	14.46	0.00	0.378	13.19	0.11	1.1	98.9	0.0	2.07	1.31	0.68	0.83	2.96	107640	13260	60	0	120	0	0	logfile
✔	7KoG	22975	2023-04-24	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.26	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	4.1	0.003	0.78	0.0	0.04	16.94	0.00	2.101	12.44	0.00	0.6	99.4	0.0	2.86	1.99	0.74	0.74	—	17384	2154	2	0	0	0	0	logfile
✔	8H1P	34430	2023-04-23	2022-10-03	3.48	3.37	3.43	3.5	0.003	0.56	0.0	0.04	18.45	0.00	2.208	10.09	0.00	0.5	99.5	0.0	0.52	0.71	0.79	0.67	3.5	0.003	0.55	0.0	0.04	17.96	0.00	2.217	8.83	0.36	2.6	97.4	0.0	1.21	0.58	0.69	0.79	1.12	15950	2024	11	0	0	0	0	logfile
✔	7U2A	26310	2023-04-20	2022-02-23	4.1	3.51	—	4.0	0.010	1.05	0.0	0.05	14.76	0.00	1.918	11.25	0.31	0.5	99.5	0.0	2.04	0.59	0.61	—	4.0	0.005	0.73	0.0	0.04	15.30	0.01	2.098	16.08	0.00	3.1	96.9	0.0	-0.13	1.07	0.66	0.73	—	6855	761	5	38	2	0	0	logfile
✔	7MQC	23942	2023-04-26	2021-05-05	3.64	3.07	3.58	3.4	0.007	0.81	0.0	0.06	13.15	0.01	2.215	1.31	0.61	0.5	99.5	0.0	1.03	0.71	0.79	3.27	3.4	0.003	0.52	0.0	0.04	14.47	0.00	2.271	3.80	0.35	2.2	97.8	0.0	1.13	0.40	0.74	0.81	2.97	12556	1640	16	16	0	0	0	logfile
✔	7UB2	26434	2023-04-24	2022-03-14	3.4	3.54	3.54	3.5	0.003	0.56	0.0	0.04	20.86	0.00	2.134	4.67	0.60	0.5	99.5	0.0	0.65	0.59	0.85	1.32	3.5	0.003	0.58	0.0	0.04	20.96	0.00	2.219	4.35	0.54	2.7	97.3	0.0	0.59	0.41	0.68	0.89	1.18	17579	1910	12	98	0	0	0	logfile
✔	7UNM	26627	2023-04-22	2022-04-11	2.61	3.48	2.66	3.3	0.002	0.43	0.0	0.04	11.23	0.00	2.087	3.44	0.00	0.5	99.5	0.0	3.34	0.67	0.82	2.41	3.3	0.004	0.53	0.0	0.04	14.40	0.00	1.941	4.47	0.48	2.1	97.9	0.0	4.10	0.81	0.56	0.79	1.79	11694	736	6	0	5	55	5920	logfile
✔	7MQB	23941	2023-04-26	2021-05-05	3.25	3.29	3.22	3.3	0.007	0.72	0.0	0.05	13.00	0.00	2.302	2.48	0.66	0.5	99.5	0.0	1.28	0.81	0.86	4.28	3.2	0.004	0.53	0.0	0.05	14.50	0.00	2.211	3.55	0.90	2.9	97.1	0.0	0.80	0.36	0.82	0.89	4.53	12760	1640	16	16	0	0	0	logfile
✔	8EG0	28108	2023-04-20	2022-09-10	3.53	4.58	3.65	4.0	0.002	0.49	0.0	0.04	11.73	0.00	2.269	7.87	0.00	0.5	99.5	0.0	1.82	0.89	0.83	1.71	4.1	0.004	0.55	0.0	0.04	13.47	0.00	2.195	11.32	0.00	2.3	97.7	0.0	1.60	0.57	0.90	0.85	1.98	6031	584	4	65	0	0	0	logfile
✔	8DEP	27394	2023-04-19	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	13.59	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.62	0.0	0.03	16.80	0.00	2.214	7.84	0.32	1.5	98.5	0.0	2.16	0.65	0.46	0.77	1.68	3223	398	1	0	4	0	0	logfile
✔	6T24	10366	2023-04-23	2019-10-07	3.7	3.44	3.63	3.6	0.049	3.18	0.0	0.23	14.36	0.01	2.104	2.74	0.00	0.5	99.5	0.0	0.74	0.68	0.80	2.64	3.5	0.003	1.54	0.0	0.04	17.29	0.00	1.619	16.29	0.32	1.4	98.6	0.0	0.89	1.42	0.69	0.82	2.30	14910	1855	10	0	20	0	0	logfile
✔	7UJ0	26559	2023-04-28	2022-03-29	3.26	3.50	—	3.4	0.005	0.83	0.0	0.04	14.20	0.00	2.005	3.09	0.00	0.5	99.5	0.0	-1.04	0.61	0.82	3.29	3.4	0.004	0.61	0.0	0.04	16.73	0.00	1.774	10.35	0.34	3.5	96.5	0.0	-0.01	0.72	0.62	0.86	2.98	76314	4823	20	0	21	0	38308	logfile
✔	7QN8	14070	2023-04-24	2021-12-20	3.1	3.39	—	3.2	0.003	0.46	0.0	0.04	8.31	0.00	2.247	3.93	0.34	0.5	99.5	0.0	2.21	0.79	0.86	3.96	3.1	0.002	0.60	0.0	0.04	13.15	0.00	2.165	7.74	0.68	1.4	98.6	0.0	1.83	0.81	0.80	0.90	3.98	16755	1992	19	0	32	0	0	logfile
✔	7YQD	34024	2023-04-21	2022-08-06	3.4	3.67	3.38	3.7	0.012	1.46	7.0	0.10	13.65	0.00	2.335	4.80	7.63	0.5	99.5	0.0	6.20	0.79	0.85	0.96	3.7	0.003	0.59	0.0	0.04	16.42	0.00	2.244	8.14	1.51	0.6	99.4	0.0	4.52	0.70	0.77	0.84	0.91	10290	1330	7	0	0	0	0	logfile
✘	7Y5H	33620	2023-04-20	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4704	600	4	0	4	0	0	logfile

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