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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7PLY | 13506 | 2022-04-05 | 2021-09-01 | 3.2 | 3.79 | 3.36 | 3.5 | 0.010 | 0.94 | 0.0 | 0.06 | 14.60 | 0.01 | 1.199 | 3.82 | 0.00 | 0.2 | 99.8 | 0.0 | -1.06 | 0.89 | 0.85 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10149 | 1258 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PMF | 13531 | 2022-04-05 | 2021-09-02 | 3.4 | 4.29 | 3.47 | 3.3 | 0.010 | 1.00 | 2.0 | 0.06 | 14.79 | 0.01 | 1.313 | 3.78 | 0.09 | 0.2 | 99.8 | 0.0 | -1.44 | 0.91 | 0.83 | 3.07 | 3.3 | 0.005 | 0.68 | 1.0 | 0.04 | 15.09 | 0.00 | 1.913 | 7.76 | 0.19 | 1.3 | 98.7 | 0.0 | 1.84 | 1.69 | 0.94 | 0.88 | 2.46 | 10125 | 1256 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6XLA | 22237 | 2022-04-04 | 2020-06-28 | 3.1 | 3.41 | — | 3.3 | 0.005 | 0.65 | 0.0 | 0.04 | 19.84 | 0.00 | 2.276 | 3.37 | 0.00 | 0.2 | 99.8 | 0.0 | -2.59 | 0.78 | 0.84 | 3.37 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 20.69 | 0.00 | 2.128 | 4.72 | 0.41 | 3.0 | 97.0 | 0.0 | -0.29 | 1.32 | 0.79 | 0.86 | 3.00 | 5403 | 536 | 6 | 46 | 2 | 0 | 0 | logfile |
✘ | 6ZVJ | 11458 | 2022-04-05 | 2020-07-24 | 3.8 | 3.00 | — | 3.1 | 0.010 | 1.33 | 7.0 | 0.07 | 17.39 | 0.01 | 1.731 | 5.46 | 1.39 | 0.2 | 99.8 | 0.0 | -4.19 | 0.59 | 0.64 | 1.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115020 | 10127 | 55 | 1720 | 9 | 0 | 0 | logfile |
✘ | 7PM0 | 13508 | 2022-04-05 | 2021-09-01 | 3.6 | 3.89 | 3.65 | 3.6 | 0.005 | 0.83 | 0.0 | 0.05 | 14.98 | 0.01 | 1.200 | 4.90 | 0.00 | 0.2 | 99.8 | 0.0 | -1.27 | 0.90 | 0.85 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10169 | 1261 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PMA | 13526 | 2022-04-05 | 2021-09-02 | 3.6 | 4.07 | 3.61 | 3.5 | 0.004 | 0.88 | 2.0 | 0.05 | 15.79 | 0.01 | 1.317 | 6.45 | 0.09 | 0.2 | 99.8 | 0.0 | -1.07 | 0.90 | 0.82 | 2.92 | 3.5 | 0.003 | 0.71 | 1.0 | 0.04 | 15.44 | 0.00 | 1.997 | 9.30 | 0.19 | 1.9 | 98.1 | 0.0 | 1.65 | 1.29 | 0.91 | 0.85 | 2.39 | 10066 | 1249 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PMB | 13527 | 2022-04-05 | 2021-09-02 | 3.6 | 4.10 | 3.61 | 3.6 | 0.006 | 0.93 | 2.0 | 0.06 | 15.71 | 0.01 | 1.317 | 6.47 | 0.09 | 0.2 | 99.8 | 0.0 | -1.25 | 0.90 | 0.83 | 2.52 | 3.7 | 0.003 | 0.70 | 1.0 | 0.04 | 16.29 | 0.00 | 1.973 | 9.10 | 0.00 | 2.1 | 97.9 | 0.0 | 1.44 | 1.32 | 0.90 | 0.85 | 2.24 | 10113 | 1255 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 7PM1 | 13509 | 2022-04-05 | 2021-09-01 | 3.5 | 3.74 | 3.64 | 3.5 | 0.004 | 0.80 | 0.0 | 0.05 | 14.86 | 0.01 | 1.201 | 5.00 | 0.00 | 0.2 | 99.8 | 0.0 | -1.54 | 0.89 | 0.84 | 3.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10169 | 1261 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PMH | 13533 | 2022-04-05 | 2021-09-02 | 3.4 | 4.28 | 3.26 | 3.3 | 0.009 | 1.01 | 3.0 | 0.06 | 14.96 | 0.01 | 1.310 | 4.17 | 0.09 | 0.2 | 99.8 | 0.0 | -1.51 | 0.91 | 0.83 | 3.35 | 3.3 | 0.003 | 0.61 | 1.0 | 0.04 | 15.50 | 0.00 | 2.070 | 6.54 | 0.00 | 1.5 | 98.5 | 0.0 | 1.79 | 1.28 | 0.94 | 0.87 | 2.83 | 10154 | 1259 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMC | 13528 | 2022-04-05 | 2021-09-02 | 3.7 | 4.09 | 3.62 | 3.5 | 0.008 | 1.07 | 2.0 | 0.06 | 16.10 | 0.01 | 1.317 | 7.05 | 0.09 | 0.2 | 99.8 | 0.0 | -1.41 | 0.89 | 0.80 | 2.38 | 3.5 | 0.003 | 0.69 | 1.0 | 0.04 | 16.05 | 0.00 | 2.034 | 9.93 | 0.28 | 1.6 | 98.4 | 0.0 | 1.51 | 1.34 | 0.90 | 0.82 | 1.87 | 10139 | 1258 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PMD | 13529 | 2022-04-05 | 2021-09-02 | 2.9 | 4.01 | 2.83 | 3.4 | 0.012 | 1.06 | 2.0 | 0.06 | 14.82 | 0.01 | 1.314 | 3.61 | 0.09 | 0.2 | 99.8 | 0.0 | -1.33 | 0.94 | 0.88 | 3.40 | 3.4 | 0.002 | 0.66 | 1.0 | 0.04 | 15.37 | 0.00 | 2.012 | 6.87 | 0.55 | 1.9 | 98.1 | 0.0 | 1.80 | 1.26 | 0.93 | 0.87 | 2.98 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7BES | 12158 | 2022-04-04 | 2020-12-24 | 2.85 | 2.95 | 2.86 | 2.9 | 0.013 | 1.04 | 0.0 | 0.05 | 9.86 | 0.00 | 2.236 | 7.96 | 0.85 | 0.3 | 99.7 | 0.0 | 0.37 | 0.73 | 0.82 | 3.32 | 2.9 | 0.005 | 0.63 | 0.0 | 0.04 | 15.36 | 0.01 | 1.971 | 9.97 | 3.18 | 1.1 | 98.9 | 0.0 | 0.06 | 1.17 | 0.74 | 0.85 | 3.07 | 9446 | 1234 | 12 | 6 | 4 | 0 | 0 | logfile |
✔ | 7QHH | 13972 | 2022-04-05 | 2021-12-12 | 3.6 | 3.51 | 3.48 | 3.6 | 0.014 | 1.83 | 0.0 | 0.09 | 12.10 | 0.01 | 2.546 | 3.73 | 0.19 | 0.3 | 99.6 | 0.1 | -0.83 | 0.66 | 0.74 | 3.73 | 3.5 | 0.009 | 0.73 | 0.0 | 0.04 | 13.78 | 0.00 | 2.128 | 11.11 | 1.13 | 2.1 | 97.9 | 0.0 | 0.69 | 1.32 | 0.65 | 0.74 | 2.73 | 13626 | 1982 | 12 | 0 | 14 | 0 | 0 | logfile |
✔ | 7PM5 | 13521 | 2022-04-05 | 2021-09-02 | 3.1 | 3.88 | 3.26 | 3.5 | 0.005 | 0.83 | 2.0 | 0.05 | 14.72 | 0.01 | 1.317 | 4.50 | 0.09 | 0.3 | 99.7 | 0.0 | -1.20 | 0.89 | 0.86 | 3.36 | 3.5 | 0.006 | 0.72 | 1.0 | 0.04 | 15.01 | 0.00 | 1.993 | 7.23 | 0.18 | 1.6 | 98.4 | 0.0 | 1.62 | 0.69 | 0.87 | 0.85 | 2.96 | 10171 | 1263 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PM8 | 13524 | 2022-04-05 | 2021-09-02 | 3.5 | 3.91 | 3.50 | 3.4 | 0.004 | 0.88 | 2.0 | 0.05 | 15.56 | 0.01 | 1.316 | 6.40 | 0.09 | 0.3 | 99.7 | 0.0 | -1.60 | 0.90 | 0.83 | 2.90 | 3.4 | 0.004 | 0.69 | 1.0 | 0.04 | 15.98 | 0.00 | 1.927 | 10.06 | 0.09 | 2.4 | 97.6 | 0.0 | 0.91 | 1.30 | 0.91 | 0.85 | 2.71 | 10149 | 1260 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 6P6F | 20261 | 2022-04-10 | 2019-06-03 | 4.5 | 4.71 | 4.50 | 4.6 | 0.017 | 1.59 | 0.0 | 0.09 | 9.24 | 0.01 | 2.442 | 0.18 | 0.00 | 0.3 | 99.7 | 0.0 | 0.73 | 0.71 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 159840 | 21060 | 120 | 0 | 0 | 0 | 0 | logfile |
✔ | 6C9i | 7436 | 2022-04-06 | 2018-01-26 | 3.09 | 3.21 | — | 3.2 | 0.029 | 1.48 | 0.0 | 0.12 | 9.22 | 0.01 | 2.417 | 0.81 | 0.00 | 0.3 | 99.6 | 0.1 | 2.36 | 0.79 | 0.85 | 4.97 | 3.2 | 0.004 | 0.47 | 0.0 | 0.04 | 15.04 | 0.00 | 2.229 | 5.30 | 0.12 | 0.0 | 100.0 | 0.0 | 3.66 | 2.42 | 0.73 | 0.90 | 3.62 | 23700 | 3087 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MDo | 9102 | 2022-04-09 | 2018-09-04 | 3.9 | 5.46 | — | 4.2 | 0.015 | 1.44 | 0.0 | 0.12 | 13.30 | 0.01 | 2.012 | 6.72 | 0.16 | 0.3 | 99.6 | 0.0 | -3.28 | 0.79 | 0.68 | 0.38 | 4.2 | 0.005 | 0.72 | 0.0 | 0.08 | 13.76 | 0.00 | 1.781 | 20.24 | 0.41 | 7.9 | 92.1 | 0.0 | -1.53 | 1.53 | 0.87 | 0.85 | 0.19 | 45373 | 2843 | 13 | 0 | 11 | 0 | 22858 | logfile |
✔ | 6U1X | 20614 | 2022-04-08 | 2019-08-17 | 3.0 | 3.37 | 3.11 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 10.38 | 0.00 | 1.986 | 3.76 | 0.11 | 0.3 | 99.7 | 0.0 | -3.08 | 0.67 | 0.81 | 4.07 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 14.55 | 0.00 | 1.804 | 7.22 | 1.07 | 5.2 | 94.8 | 0.0 | -0.22 | 2.07 | 0.69 | 0.83 | 3.64 | 33529 | 2087 | 3 | 0 | 2 | 0 | 16768 | logfile |
✔ | 6T93 | 10408 | 2022-04-05 | 2019-10-25 | 3.49 | 4.10 | — | 3.7 | 0.014 | 1.15 | 0.0 | 0.06 | 27.23 | 0.01 | 2.435 | 0.78 | 0.00 | 0.3 | 99.7 | 0.0 | 0.78 | 0.87 | 0.85 | 2.94 | 3.7 | 0.004 | 0.67 | 0.0 | 0.03 | 28.09 | 0.00 | 2.207 | 12.22 | 0.48 | 2.4 | 97.6 | 0.0 | 2.49 | 1.86 | 0.87 | 0.87 | 2.02 | 12199 | 758 | 10 | 302 | 0 | 0 | 0 | logfile |