Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XL6	22235	2023-07-03	2020-06-28	3.0	3.41	—	3.3	0.005	0.68	0.0	0.05	20.19	0.00	2.257	5.23	0.00	0.0	100.0	0.0	-1.93	0.76	0.83	2.94	3.3	0.003	0.53	0.0	0.04	21.18	0.00	2.275	6.47	2.65	1.3	98.7	0.0	0.64	1.38	0.74	0.83	2.39	5456	536	6	46	4	0	0	logfile
✔	7PBW	13307	2023-07-05	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	7UiX	26556	2023-07-12	2022-03-29	3.24	3.26	—	3.3	0.004	0.79	0.0	0.04	14.12	0.00	2.013	2.99	0.02	0.1	99.9	0.0	-0.81	0.62	0.80	2.80	3.3	0.012	0.73	0.0	0.04	16.82	0.01	1.703	9.66	0.32	3.3	96.7	0.0	0.33	0.82	0.60	0.84	2.84	76307	4820	20	0	23	0	38286	logfile
✔	6PoS	20418	2023-07-03	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.48	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.002	0.55	0.0	0.04	13.00	0.00	1.937	10.02	0.03	3.3	96.7	0.0	-0.01	1.03	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	6ZLG	11265	2023-07-15	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.56	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.003	0.40	0.0	0.03	17.92	0.00	2.131	6.27	3.28	1.6	98.4	0.0	5.28	1.17	0.82	0.90	2.58	33008	4072	24	0	0	0	0	logfile
✔	7EEi	31077	2023-07-05	2021-03-18	3.6	3.44	—	3.4	0.006	1.09	0.0	0.06	13.71	0.01	1.975	5.03	0.00	0.1	99.9	0.0	-1.90	0.77	0.77	1.99	3.4	0.003	0.65	0.0	0.04	15.23	0.00	2.159	7.84	0.12	5.2	94.8	0.0	-0.01	1.24	0.80	0.80	2.19	9825	1400	1	0	0	0	0	logfile
✔	7UiZ	26558	2023-07-12	2022-03-29	3.24	3.45	—	3.4	0.004	0.75	0.0	0.05	13.43	0.00	2.014	2.79	0.00	0.1	99.9	0.0	-1.03	0.60	0.81	2.98	3.4	0.003	0.58	0.0	0.04	16.75	0.00	1.831	9.23	0.22	2.7	97.3	0.0	0.26	0.91	0.60	0.85	2.99	76521	4837	20	0	22	0	38390	logfile
✔	6WR2	21875	2023-07-18	2020-04-29	2.88	3.14	—	3.1	0.014	0.88	0.0	0.06	12.47	0.01	2.203	4.10	0.00	0.1	99.9	0.0	-0.06	0.51	0.72	2.95	3.1	0.003	0.56	0.0	0.04	17.21	0.00	2.004	6.33	1.26	2.1	97.9	0.0	1.23	1.32	0.69	0.89	4.13	42671	2729	34	0	0	14	21361	logfile
✔	7U2B	26311	2023-07-04	2022-02-23	4.1	4.26	—	4.2	0.009	0.96	0.0	0.05	14.98	0.00	1.936	7.07	0.15	0.1	99.9	0.0	2.20	0.72	0.71	—	4.2	0.003	0.62	0.0	0.04	15.43	0.00	2.153	10.28	0.00	1.8	98.2	0.0	0.53	1.44	0.78	0.80	—	7316	780	5	53	2	0	0	logfile
✔	8CL0	16708	2023-07-06	2023-02-16	3.12	3.34	3.14	3.4	0.005	0.87	0.0	0.06	12.80	0.01	2.091	3.45	0.18	0.2	99.8	0.0	-0.50	0.64	0.77	4.37	3.4	0.004	0.58	0.0	0.04	15.71	0.00	2.224	8.11	0.27	1.2	98.8	0.0	1.95	0.53	0.65	0.80	3.04	10387	1355	12	0	0	0	0	logfile
✔	6ZVJ	11458	2023-07-06	2020-07-24	3.8	3.00	—	3.1	0.010	1.33	7.0	0.07	17.39	0.01	1.731	5.46	1.39	0.2	99.8	0.0	-4.19	0.59	0.64	1.31	2.9	0.002	0.65	0.0	0.04	17.29	0.00	1.911	12.28	0.29	4.7	95.3	0.0	-0.88	1.68	0.67	0.75	0.98	115020	10127	55	1720	9	0	0	logfile
✔	7M5o	23678	2023-07-06	2021-03-24	3.54	2.81	3.58	3.6	0.003	0.54	0.0	0.04	15.95	0.00	1.978	10.65	1.25	0.2	99.8	0.0	-2.03	0.79	0.75	1.08	3.7	0.003	0.63	0.0	0.04	17.48	0.00	2.011	13.99	1.42	6.0	94.0	0.0	-0.10	1.24	0.80	0.77	1.48	11648	655	3	37	1	0	5635	logfile
✔	7LMS	23441	2023-07-03	2021-02-05	3.5	4.13	3.61	4.0	0.019	1.52	0.0	0.09	10.07	0.01	2.432	0.41	0.00	0.2	99.8	0.0	0.57	0.81	0.83	3.45	4.0	0.002	0.59	0.0	0.04	14.69	0.00	2.183	6.65	0.38	1.5	98.5	0.0	0.72	1.43	0.74	0.82	2.22	4947	613	4	0	1	0	0	logfile
✔	6XLA	22237	2023-07-03	2020-06-28	3.1	3.41	—	3.3	0.005	0.65	0.0	0.04	19.84	0.00	2.276	3.37	0.00	0.2	99.8	0.0	-2.59	0.78	0.84	3.37	3.3	0.003	0.55	0.0	0.04	20.59	0.00	2.115	4.72	0.61	2.3	97.7	0.0	-0.34	1.32	0.79	0.86	2.94	5403	536	6	46	2	0	0	logfile
✔	6C9i	7436	2023-07-11	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.81	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.46	0.0	0.04	15.19	0.00	2.246	5.13	0.16	0.0	100.0	0.0	3.57	2.43	0.72	0.90	3.61	23700	3087	24	0	0	0	0	logfile
✔	8oTS	17183	2023-07-06	2023-04-21	3.3	4.05	3.44	3.6	0.009	1.03	0.0	0.06	25.68	0.01	2.508	0.66	0.63	0.3	99.7	0.0	1.70	0.89	0.85	2.32	3.7	0.005	0.56	0.0	0.03	25.90	0.00	2.174	7.52	0.00	1.2	98.8	0.0	4.62	1.37	0.89	0.88	1.45	13160	985	18	254	8	0	0	logfile
✔	7BES	12158	2023-07-05	2020-12-24	2.85	2.95	2.86	2.9	0.013	1.03	0.0	0.05	10.01	0.00	2.236	7.96	0.85	0.3	99.7	0.0	0.37	0.73	0.82	3.32	2.9	0.004	0.58	0.0	0.04	15.51	0.00	2.073	10.07	2.01	0.7	99.3	0.0	0.46	1.16	0.73	0.84	3.14	9446	1234	12	6	4	0	0	logfile
✔	7T2E	25611	2023-07-03	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	8SZA	40905	2023-07-03	2023-05-29	2.75	3.32	2.81	3.4	0.003	0.65	0.0	0.03	14.83	0.00	2.185	8.19	0.98	0.3	99.7	0.0	2.12	0.50	0.78	1.28	3.4	0.003	0.61	0.0	0.04	15.68	0.00	2.280	8.99	2.16	0.7	99.3	0.0	2.68	0.49	0.50	0.78	1.33	4800	606	11	0	6	0	0	logfile
✔	7QHH	13972	2023-07-07	2021-12-12	3.6	3.51	3.48	3.6	0.014	1.83	0.0	0.09	12.10	0.01	2.546	3.81	0.19	0.3	99.6	0.1	-0.83	0.66	0.74	3.73	3.5	0.007	0.68	0.0	0.04	13.45	0.00	2.105	10.60	0.75	1.8	98.2	0.0	1.01	1.31	0.65	0.75	2.77	13626	1982	12	0	14	0	0	logfile

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