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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6XL6 | 22235 | 2023-07-03 | 2020-06-28 | 3.0 | 3.41 | — | 3.3 | 0.005 | 0.68 | 0.0 | 0.05 | 20.19 | 0.00 | 2.257 | 5.23 | 0.00 | 0.0 | 100.0 | 0.0 | -1.93 | 0.76 | 0.83 | 2.94 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 21.18 | 0.00 | 2.275 | 6.47 | 2.65 | 1.3 | 98.7 | 0.0 | 0.64 | 1.38 | 0.74 | 0.83 | 2.39 | 5456 | 536 | 6 | 46 | 4 | 0 | 0 | logfile |
✔ | 7PBW | 13307 | 2023-07-05 | 2021-08-02 | 2.1 | 1.98 | — | 2.1 | 0.009 | 0.99 | 0.0 | 0.05 | 12.27 | 0.01 | 2.243 | 2.93 | 0.00 | 0.0 | 100.0 | 0.0 | 3.14 | 0.78 | 0.90 | 7.90 | 2.1 | 0.004 | 0.76 | 0.0 | 0.04 | 14.47 | 0.01 | 2.150 | 7.99 | 0.00 | 0.0 | 100.0 | 0.0 | 4.46 | 0.28 | 0.77 | 0.90 | 7.32 | 9500 | 873 | 54 | 0 | 81 | 230 | 0 | logfile |
✔ | 7UiX | 26556 | 2023-07-12 | 2022-03-29 | 3.24 | 3.26 | — | 3.3 | 0.004 | 0.79 | 0.0 | 0.04 | 14.12 | 0.00 | 2.013 | 2.99 | 0.02 | 0.1 | 99.9 | 0.0 | -0.81 | 0.62 | 0.80 | 2.80 | 3.3 | 0.012 | 0.73 | 0.0 | 0.04 | 16.82 | 0.01 | 1.703 | 9.66 | 0.32 | 3.3 | 96.7 | 0.0 | 0.33 | 0.82 | 0.60 | 0.84 | 2.84 | 76307 | 4820 | 20 | 0 | 23 | 0 | 38286 | logfile |
✔ | 6PoS | 20418 | 2023-07-03 | 2019-07-05 | 4.12 | 4.39 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 11.58 | 0.01 | 2.116 | 2.48 | 0.00 | 0.1 | 99.9 | 0.0 | -2.43 | 0.80 | 0.77 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 13.00 | 0.00 | 1.937 | 10.02 | 0.03 | 3.3 | 96.7 | 0.0 | -0.01 | 1.03 | 0.82 | 0.80 | — | 53503 | 3425 | 20 | 0 | 13 | 0 | 26853 | logfile |
✔ | 6ZLG | 11265 | 2023-07-15 | 2020-06-30 | 3.0 | 3.18 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.03 | 16.50 | 0.00 | 2.180 | 7.56 | 4.15 | 0.1 | 99.9 | 0.0 | 1.26 | 0.80 | 0.87 | 2.98 | 3.1 | 0.003 | 0.40 | 0.0 | 0.03 | 17.92 | 0.00 | 2.131 | 6.27 | 3.28 | 1.6 | 98.4 | 0.0 | 5.28 | 1.17 | 0.82 | 0.90 | 2.58 | 33008 | 4072 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EEi | 31077 | 2023-07-05 | 2021-03-18 | 3.6 | 3.44 | — | 3.4 | 0.006 | 1.09 | 0.0 | 0.06 | 13.71 | 0.01 | 1.975 | 5.03 | 0.00 | 0.1 | 99.9 | 0.0 | -1.90 | 0.77 | 0.77 | 1.99 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 15.23 | 0.00 | 2.159 | 7.84 | 0.12 | 5.2 | 94.8 | 0.0 | -0.01 | 1.24 | 0.80 | 0.80 | 2.19 | 9825 | 1400 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiZ | 26558 | 2023-07-12 | 2022-03-29 | 3.24 | 3.45 | — | 3.4 | 0.004 | 0.75 | 0.0 | 0.05 | 13.43 | 0.00 | 2.014 | 2.79 | 0.00 | 0.1 | 99.9 | 0.0 | -1.03 | 0.60 | 0.81 | 2.98 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 16.75 | 0.00 | 1.831 | 9.23 | 0.22 | 2.7 | 97.3 | 0.0 | 0.26 | 0.91 | 0.60 | 0.85 | 2.99 | 76521 | 4837 | 20 | 0 | 22 | 0 | 38390 | logfile |
✔ | 6WR2 | 21875 | 2023-07-18 | 2020-04-29 | 2.88 | 3.14 | — | 3.1 | 0.014 | 0.88 | 0.0 | 0.06 | 12.47 | 0.01 | 2.203 | 4.10 | 0.00 | 0.1 | 99.9 | 0.0 | -0.06 | 0.51 | 0.72 | 2.95 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 17.21 | 0.00 | 2.004 | 6.33 | 1.26 | 2.1 | 97.9 | 0.0 | 1.23 | 1.32 | 0.69 | 0.89 | 4.13 | 42671 | 2729 | 34 | 0 | 0 | 14 | 21361 | logfile |
✔ | 7U2B | 26311 | 2023-07-04 | 2022-02-23 | 4.1 | 4.26 | — | 4.2 | 0.009 | 0.96 | 0.0 | 0.05 | 14.98 | 0.00 | 1.936 | 7.07 | 0.15 | 0.1 | 99.9 | 0.0 | 2.20 | 0.72 | 0.71 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 15.43 | 0.00 | 2.153 | 10.28 | 0.00 | 1.8 | 98.2 | 0.0 | 0.53 | 1.44 | 0.78 | 0.80 | — | 7316 | 780 | 5 | 53 | 2 | 0 | 0 | logfile |
✔ | 8CL0 | 16708 | 2023-07-06 | 2023-02-16 | 3.12 | 3.34 | 3.14 | 3.4 | 0.005 | 0.87 | 0.0 | 0.06 | 12.80 | 0.01 | 2.091 | 3.45 | 0.18 | 0.2 | 99.8 | 0.0 | -0.50 | 0.64 | 0.77 | 4.37 | 3.4 | 0.004 | 0.58 | 0.0 | 0.04 | 15.71 | 0.00 | 2.224 | 8.11 | 0.27 | 1.2 | 98.8 | 0.0 | 1.95 | 0.53 | 0.65 | 0.80 | 3.04 | 10387 | 1355 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZVJ | 11458 | 2023-07-06 | 2020-07-24 | 3.8 | 3.00 | — | 3.1 | 0.010 | 1.33 | 7.0 | 0.07 | 17.39 | 0.01 | 1.731 | 5.46 | 1.39 | 0.2 | 99.8 | 0.0 | -4.19 | 0.59 | 0.64 | 1.31 | 2.9 | 0.002 | 0.65 | 0.0 | 0.04 | 17.29 | 0.00 | 1.911 | 12.28 | 0.29 | 4.7 | 95.3 | 0.0 | -0.88 | 1.68 | 0.67 | 0.75 | 0.98 | 115020 | 10127 | 55 | 1720 | 9 | 0 | 0 | logfile |
✔ | 7M5o | 23678 | 2023-07-06 | 2021-03-24 | 3.54 | 2.81 | 3.58 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 15.95 | 0.00 | 1.978 | 10.65 | 1.25 | 0.2 | 99.8 | 0.0 | -2.03 | 0.79 | 0.75 | 1.08 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 17.48 | 0.00 | 2.011 | 13.99 | 1.42 | 6.0 | 94.0 | 0.0 | -0.10 | 1.24 | 0.80 | 0.77 | 1.48 | 11648 | 655 | 3 | 37 | 1 | 0 | 5635 | logfile |
✔ | 7LMS | 23441 | 2023-07-03 | 2021-02-05 | 3.5 | 4.13 | 3.61 | 4.0 | 0.019 | 1.52 | 0.0 | 0.09 | 10.07 | 0.01 | 2.432 | 0.41 | 0.00 | 0.2 | 99.8 | 0.0 | 0.57 | 0.81 | 0.83 | 3.45 | 4.0 | 0.002 | 0.59 | 0.0 | 0.04 | 14.69 | 0.00 | 2.183 | 6.65 | 0.38 | 1.5 | 98.5 | 0.0 | 0.72 | 1.43 | 0.74 | 0.82 | 2.22 | 4947 | 613 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XLA | 22237 | 2023-07-03 | 2020-06-28 | 3.1 | 3.41 | — | 3.3 | 0.005 | 0.65 | 0.0 | 0.04 | 19.84 | 0.00 | 2.276 | 3.37 | 0.00 | 0.2 | 99.8 | 0.0 | -2.59 | 0.78 | 0.84 | 3.37 | 3.3 | 0.003 | 0.55 | 0.0 | 0.04 | 20.59 | 0.00 | 2.115 | 4.72 | 0.61 | 2.3 | 97.7 | 0.0 | -0.34 | 1.32 | 0.79 | 0.86 | 2.94 | 5403 | 536 | 6 | 46 | 2 | 0 | 0 | logfile |
✔ | 6C9i | 7436 | 2023-07-11 | 2018-01-26 | 3.09 | 3.21 | — | 3.2 | 0.029 | 1.48 | 0.0 | 0.12 | 9.22 | 0.01 | 2.417 | 0.81 | 0.00 | 0.3 | 99.6 | 0.1 | 2.36 | 0.79 | 0.85 | 4.97 | 3.2 | 0.004 | 0.46 | 0.0 | 0.04 | 15.19 | 0.00 | 2.246 | 5.13 | 0.16 | 0.0 | 100.0 | 0.0 | 3.57 | 2.43 | 0.72 | 0.90 | 3.61 | 23700 | 3087 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oTS | 17183 | 2023-07-06 | 2023-04-21 | 3.3 | 4.05 | 3.44 | 3.6 | 0.009 | 1.03 | 0.0 | 0.06 | 25.68 | 0.01 | 2.508 | 0.66 | 0.63 | 0.3 | 99.7 | 0.0 | 1.70 | 0.89 | 0.85 | 2.32 | 3.7 | 0.005 | 0.56 | 0.0 | 0.03 | 25.90 | 0.00 | 2.174 | 7.52 | 0.00 | 1.2 | 98.8 | 0.0 | 4.62 | 1.37 | 0.89 | 0.88 | 1.45 | 13160 | 985 | 18 | 254 | 8 | 0 | 0 | logfile |
✔ | 7BES | 12158 | 2023-07-05 | 2020-12-24 | 2.85 | 2.95 | 2.86 | 2.9 | 0.013 | 1.03 | 0.0 | 0.05 | 10.01 | 0.00 | 2.236 | 7.96 | 0.85 | 0.3 | 99.7 | 0.0 | 0.37 | 0.73 | 0.82 | 3.32 | 2.9 | 0.004 | 0.58 | 0.0 | 0.04 | 15.51 | 0.00 | 2.073 | 10.07 | 2.01 | 0.7 | 99.3 | 0.0 | 0.46 | 1.16 | 0.73 | 0.84 | 3.14 | 9446 | 1234 | 12 | 6 | 4 | 0 | 0 | logfile |
✔ | 7T2E | 25611 | 2023-07-03 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 16.21 | 0.00 | 2.222 | 2.35 | 1.18 | 0.3 | 99.7 | 0.0 | 0.45 | 0.13 | 0.36 | 0.86 | 4.79 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8SZA | 40905 | 2023-07-03 | 2023-05-29 | 2.75 | 3.32 | 2.81 | 3.4 | 0.003 | 0.65 | 0.0 | 0.03 | 14.83 | 0.00 | 2.185 | 8.19 | 0.98 | 0.3 | 99.7 | 0.0 | 2.12 | 0.50 | 0.78 | 1.28 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.68 | 0.00 | 2.280 | 8.99 | 2.16 | 0.7 | 99.3 | 0.0 | 2.68 | 0.49 | 0.50 | 0.78 | 1.33 | 4800 | 606 | 11 | 0 | 6 | 0 | 0 | logfile |
✔ | 7QHH | 13972 | 2023-07-07 | 2021-12-12 | 3.6 | 3.51 | 3.48 | 3.6 | 0.014 | 1.83 | 0.0 | 0.09 | 12.10 | 0.01 | 2.546 | 3.81 | 0.19 | 0.3 | 99.6 | 0.1 | -0.83 | 0.66 | 0.74 | 3.73 | 3.5 | 0.007 | 0.68 | 0.0 | 0.04 | 13.45 | 0.00 | 2.105 | 10.60 | 0.75 | 1.8 | 98.2 | 0.0 | 1.01 | 1.31 | 0.65 | 0.75 | 2.77 | 13626 | 1982 | 12 | 0 | 14 | 0 | 0 | logfile |