Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SHT	10205	2021-10-07	2019-08-08	2.73	2.88	2.78	2.8	0.015	1.55	0.0	0.07	17.80	0.01	0.000	10.21	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.003	0.55	0.0	0.04	19.58	0.00	0.000	4.32	2.06	1.7	98.3	0.0	5.28	1.75	0.71	0.84	2.62	37152	4176	24	0	48	1728	0	logfile
✔	3JAF	6346	2021-10-04	2015-06-08	3.8	2.26	—	3.8	0.025	1.93	0.0	0.10	10.09	0.01	2.134	18.84	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.003	1.02	0.0	0.04	13.99	0.00	2.153	19.14	0.14	2.0	98.0	0.0	0.82	1.83	0.72	0.81	1.46	13865	1710	10	0	15	0	0	logfile
✔	6C9K	7437	2021-10-07	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	0.33	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.003	0.59	0.0	0.04	14.71	0.00	2.162	16.61	0.31	2.0	98.0	0.0	3.42	0.94	0.81	0.67	-0.16	37632	4923	24	0	0	0	0	logfile
✔	6WKY	21813	2021-10-03	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.2	0.004	0.95	0.0	0.05	15.71	0.00	2.311	18.73	0.00	0.0	100.0	0.0	-1.69	3.29	0.75	0.86	—	9140	1160	40	0	0	0	0	logfile
✔	6PP6	20420	2021-10-06	2019-07-05	4.28	4.54	—	4.3	0.004	0.71	0.0	0.04	11.88	0.00	2.179	3.17	0.00	0.6	99.4	0.0	-1.13	0.79	0.78	—	4.3	0.003	0.55	0.0	0.04	12.54	0.00	1.945	10.66	0.00	3.9	96.1	0.0	-0.54	1.05	0.81	0.81	—	32106	2062	13	0	12	0	16126	logfile
✔	7oHF	12901	2021-10-06	2021-05-10	3.0	3.29	3.12	3.4	0.008	0.89	0.0	0.05	9.77	0.01	2.144	2.67	0.00	0.6	99.4	0.0	-7.39	0.64	0.80	4.20	3.4	0.002	0.59	0.0	0.04	16.03	0.00	2.134	8.04	0.95	0.0	100.0	0.0	0.15	1.61	0.65	0.81	2.85	33576	4056	24	0	0	0	0	logfile
✔	6PXM	20521	2021-10-06	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.61	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.43	0.0	0.03	17.65	0.00	2.202	3.26	0.09	1.8	98.2	0.0	5.35	1.49	0.78	0.89	3.87	32736	4080	24	0	0	0	0	logfile
✔	6WSG	21892	2021-10-07	2020-04-30	3.16	3.73	—	3.5	0.011	0.83	0.0	0.05	13.35	0.01	1.970	3.31	0.04	0.7	99.3	0.0	-1.08	0.76	0.73	3.52	3.5	0.003	0.49	0.0	0.04	14.88	0.00	1.866	6.19	0.04	2.9	97.1	0.0	1.28	0.66	0.77	0.81	2.88	52087	3334	26	0	9	7	26155	logfile
✔	6XLM	22248	2021-10-05	2020-06-28	3.2	3.76	—	3.5	0.016	0.80	0.0	0.06	14.94	0.00	1.972	9.37	0.07	0.7	99.3	0.0	-2.52	0.82	0.84	2.16	3.5	0.004	0.64	0.0	0.04	15.62	0.00	1.960	13.74	0.00	2.1	97.9	0.0	-1.59	0.41	0.84	0.87	1.93	28244	3485	11	40	5	0	0	logfile
✔	6ZBJ	11156	2021-10-07	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.8	0.003	0.49	0.0	0.03	15.10	0.00	2.086	3.60	0.14	0.8	99.2	0.0	4.12	1.33	0.88	0.83	1.19	39212	2334	4	0	0	0	19864	logfile
✔	6WXE	21955	2021-10-14	2020-05-10	3.4	3.42	3.42	3.4	0.004	0.72	0.0	0.05	12.25	0.00	1.273	3.67	1.95	0.7	99.3	0.0	-4.17	0.54	0.80	3.31	3.4	0.005	0.64	0.0	0.04	15.28	0.00	1.884	8.57	0.25	6.7	93.2	0.1	-1.60	2.59	0.54	0.83	3.22	219427	13952	57	0	72	0	108415	logfile
✔	6ZBL	11157	2021-10-07	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.002	0.47	0.0	0.03	15.52	0.00	1.997	3.86	0.09	1.1	98.9	0.0	4.53	1.37	0.88	0.82	0.85	39074	2326	4	0	0	0	19788	logfile
✔	6TA3	10421	2021-10-03	2019-10-29	3.8	4.18	—	3.9	0.024	2.49	4.0	0.08	18.69	0.01	0.317	207.57	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.89	0.0	0.04	17.71	0.01	1.319	25.71	0.49	2.9	97.1	0.0	0.06	2.61	0.78	0.75	0.84	9491	1201	6	0	5	0	0	logfile
✔	6WCB	21605	2021-10-03	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.002	0.47	0.0	0.03	15.68	0.00	2.040	3.62	0.00	1.5	98.5	0.0	3.79	1.32	0.56	0.79	2.12	11647	734	6	0	7	40	5904	logfile
✔	6WCC	21606	2021-10-03	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.002	0.48	0.0	0.03	15.76	0.00	2.209	5.34	0.16	2.3	97.7	0.0	4.55	1.70	0.54	0.79	1.80	11629	734	6	0	5	12	5908	logfile
✔	7oNJ	12996	2021-10-04	2021-05-25	2.3	2.52	2.24	2.5	0.019	1.53	0.0	0.06	21.26	0.01	2.155	8.28	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.003	0.47	0.0	0.04	18.14	0.00	2.192	7.92	0.47	0.9	99.1	0.0	2.25	1.56	0.77	0.89	4.33	16947	1834	21	0	63	266	0	logfile
✔	6ZBE	11152	2021-10-04	2020-06-08	3.3	4.04	3.36	3.7	0.010	1.16	0.0	0.08	13.39	0.01	2.470	1.08	0.00	0.8	99.2	0.0	0.61	0.84	0.76	1.69	3.7	0.002	0.49	0.0	0.03	15.37	0.00	2.053	5.02	0.18	1.1	98.9	0.0	4.31	1.88	0.86	0.80	1.08	19534	1160	4	0	0	0	9902	logfile
✔	6ZBF	11153	2021-10-04	2020-06-08	3.2	3.99	3.33	3.6	0.010	1.17	0.0	0.08	13.49	0.01	2.469	1.23	0.00	0.8	99.2	0.0	0.79	0.84	0.76	1.37	3.6	0.013	1.09	1.0	0.03	15.48	0.00	1.892	6.78	0.00	1.3	98.7	0.0	3.74	2.83	0.85	0.79	1.55	19459	1156	4	0	0	0	9861	logfile
✔	7LRC	23494	2021-10-03	2021-02-16	2.97	4.17	2.92	3.5	0.006	0.48	0.0	0.04	7.93	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.57	0.0	0.04	11.48	0.00	1.873	8.77	1.36	0.3	99.7	0.0	3.72	0.58	0.76	0.86	2.83	6202	762	6	0	6	0	0	logfile
✔	6PEK	20327	2021-10-03	2019-06-20	4.2	4.25	—	4.2	0.004	0.71	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.73	0.0	0.04	14.28	0.00	1.066	14.02	0.00	1.9	98.1	0.0	-0.12	1.04	0.72	0.77	—	11106	1405	11	0	13	0	0	logfile

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