Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X64	22069	2022-12-13	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.24	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	6ZLG	11265	2022-12-18	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.56	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33008	4072	24	0	0	0	0	logfile
✔	6WR2	21875	2022-12-21	2020-04-29	2.88	3.14	—	3.1	0.014	0.88	0.0	0.06	12.47	0.01	2.203	4.22	0.00	0.1	99.9	0.0	-0.06	0.51	0.72	2.95	3.1	0.004	0.56	0.0	0.04	17.28	0.00	2.019	6.42	1.09	2.4	97.6	0.0	1.11	1.32	0.69	0.88	4.13	42671	2729	34	0	0	14	21361	logfile
✔	7EEi	31077	2022-12-12	2021-03-18	3.6	3.44	—	3.4	0.006	1.09	0.0	0.06	13.71	0.01	1.975	5.14	0.00	0.1	99.9	0.0	-1.90	0.77	0.77	1.99	3.4	0.003	0.67	0.0	0.04	15.17	0.00	2.168	8.05	0.24	5.4	94.6	0.0	0.13	1.23	0.80	0.80	2.13	9825	1400	1	0	0	0	0	logfile
✘	7PLZ	13507	2022-12-18	2021-09-01	3.2	3.30	3.19	3.2	0.004	0.77	0.0	0.05	14.63	0.01	1.198	5.79	0.00	0.1	99.9	0.0	-1.13	0.88	0.84	2.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23278	2887	10	0	12	0	0	logfile
✔	7UiX	26556	2022-12-15	2022-03-29	3.24	3.26	—	3.3	0.004	0.79	0.0	0.04	14.12	0.00	2.013	3.01	0.02	0.1	99.9	0.0	-0.81	0.62	0.80	2.80	3.3	0.012	0.73	0.0	0.04	16.80	0.01	1.716	9.98	0.25	3.5	96.5	0.0	0.10	0.83	0.63	0.85	2.86	76307	4820	20	0	23	0	38286	logfile
✔	7PLU	13502	2022-12-15	2021-09-01	3.2	3.11	3.17	3.0	0.005	0.85	7.0	0.05	14.66	0.01	1.314	5.34	0.04	0.1	99.9	0.0	-1.57	0.89	0.82	3.39	3.0	0.003	0.64	3.0	0.04	15.74	0.00	1.930	8.56	0.20	1.6	98.4	0.0	1.18	1.28	0.91	0.87	2.55	23288	2906	13	0	9	0	0	logfile
✔	7U2B	26311	2022-12-11	2022-02-23	4.1	4.26	—	4.2	0.009	0.96	0.0	0.05	14.98	0.00	1.936	7.14	0.15	0.1	99.9	0.0	2.20	0.72	0.71	—	4.2	0.003	0.61	0.0	0.04	15.25	0.00	2.119	9.21	0.00	1.9	98.1	0.0	0.77	1.83	0.78	0.79	—	7316	780	5	53	2	0	0	logfile
✔	7UiZ	26558	2022-12-15	2022-03-29	3.24	3.45	—	3.4	0.004	0.75	0.0	0.05	13.43	0.00	2.014	2.86	0.00	0.1	99.9	0.0	-1.03	0.60	0.81	2.98	3.4	0.003	0.59	0.0	0.04	16.80	0.00	1.819	9.75	0.22	3.0	97.0	0.0	0.13	0.92	0.60	0.85	3.03	76521	4837	20	0	22	0	38390	logfile
✔	7PME	13530	2022-12-15	2021-09-02	2.9	3.93	2.92	3.1	0.005	0.83	6.0	0.05	14.88	0.01	1.313	4.94	0.08	0.1	99.9	0.0	-1.26	0.93	0.86	3.45	3.1	0.002	0.65	3.0	0.04	15.60	0.00	2.031	7.13	0.93	1.7	98.3	0.0	1.61	0.63	0.94	0.88	2.95	23370	2906	15	0	15	0	0	logfile
✔	6PoS	20418	2022-12-11	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.48	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.003	0.56	0.0	0.04	13.04	0.00	1.941	10.10	0.07	3.5	96.5	0.0	-0.16	1.03	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	7PMF	13531	2022-12-12	2021-09-02	3.4	4.29	3.47	3.3	0.010	1.00	2.0	0.06	14.81	0.01	1.313	4.03	0.09	0.2	99.8	0.0	-1.44	0.91	0.83	3.07	3.3	0.003	0.61	1.0	0.04	15.08	0.00	1.970	7.11	0.09	1.1	98.9	0.0	1.88	1.69	0.94	0.88	2.42	10125	1256	6	0	6	0	0	logfile
✔	7PMi	13535	2022-12-12	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.17	3.0	0.07	15.30	0.01	1.306	5.14	0.09	0.2	99.8	0.0	-1.50	0.92	0.84	2.97	3.3	0.003	0.67	1.0	0.04	15.61	0.00	2.043	7.76	0.09	1.5	98.5	0.0	1.37	0.66	0.94	0.88	2.59	10189	1264	6	0	6	0	0	logfile
✔	7PMJ	13536	2022-12-12	2021-09-02	3.4	4.31	3.37	3.3	0.010	1.11	2.0	0.06	15.32	0.01	1.310	6.69	0.09	0.2	99.8	0.0	-1.97	0.90	0.82	3.01	3.3	0.003	0.62	1.0	0.04	15.56	0.00	1.948	8.14	0.09	1.6	98.4	0.0	1.83	0.72	0.93	0.86	2.59	10085	1251	6	0	6	0	0	logfile
✔	7PMH	13533	2022-12-12	2021-09-02	3.4	4.28	3.26	3.3	0.009	1.01	3.0	0.06	14.97	0.01	1.310	4.26	0.09	0.2	99.8	0.0	-1.51	0.91	0.83	3.35	3.3	0.003	0.62	1.0	0.04	15.49	0.00	2.050	7.24	0.09	1.3	98.7	0.0	1.75	1.28	0.94	0.88	2.80	10154	1259	6	0	6	0	0	logfile
✘	7PLY	13506	2022-12-18	2021-09-01	3.2	3.79	3.36	3.5	0.010	0.94	0.0	0.06	14.60	0.01	1.199	3.87	0.00	0.2	99.8	0.0	-1.06	0.89	0.85	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10149	1258	4	0	4	0	0	logfile
✔	7PMD	13529	2022-12-12	2021-09-02	2.9	4.01	2.83	3.4	0.012	1.06	2.0	0.06	14.84	0.01	1.314	3.76	0.09	0.2	99.8	0.0	-1.33	0.94	0.88	3.40	3.4	0.003	0.64	1.0	0.04	15.46	0.00	1.996	6.47	0.46	1.8	98.2	0.0	1.71	1.26	0.93	0.88	2.98	10189	1264	6	0	6	0	0	logfile
✔	7PMG	13532	2022-12-12	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.18	3.0	0.07	15.15	0.01	1.308	4.74	0.09	0.2	99.8	0.0	-1.37	0.92	0.85	3.45	3.3	0.003	0.64	1.0	0.04	15.37	0.00	1.980	6.72	0.18	1.7	98.3	0.0	1.65	1.26	0.94	0.89	2.85	10189	1264	6	0	6	0	0	logfile
✔	7PMB	13527	2022-12-12	2021-09-02	3.6	4.10	3.61	3.6	0.006	0.93	2.0	0.06	15.72	0.01	1.317	6.62	0.09	0.2	99.8	0.0	-1.25	0.90	0.83	2.52	3.6	0.005	0.73	1.0	0.04	16.33	0.00	1.889	10.10	0.46	2.0	98.0	0.0	1.22	1.32	0.91	0.85	2.43	10113	1255	6	0	5	0	0	logfile
✔	6XLA	22237	2022-12-11	2020-06-28	3.1	3.41	—	3.3	0.005	0.65	0.0	0.04	19.84	0.00	2.276	3.56	0.00	0.2	99.8	0.0	-2.59	0.78	0.84	3.37	3.3	0.003	0.54	0.0	0.04	20.69	0.00	2.128	4.91	0.41	3.0	97.0	0.0	-0.29	1.32	0.79	0.86	3.00	5403	536	6	46	2	0	0	logfile

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