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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6X64 | 22069 | 2022-12-13 | 2020-05-27 | 3.7 | 4.01 | — | 3.7 | 0.008 | 1.34 | 0.0 | 0.05 | 9.32 | 0.01 | 2.584 | 0.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.84 | — | 3.7 | 0.009 | 1.23 | 0.0 | 0.05 | 5.42 | 0.00 | 2.111 | 10.24 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.35 | 0.69 | 0.86 | — | 15840 | 0 | 36 | 0 | 3168 | 0 | 0 | logfile |
✔ | 6ZLG | 11265 | 2022-12-18 | 2020-06-30 | 3.0 | 3.18 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.03 | 16.50 | 0.00 | 2.180 | 7.56 | 4.15 | 0.1 | 99.9 | 0.0 | 1.26 | 0.80 | 0.87 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33008 | 4072 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WR2 | 21875 | 2022-12-21 | 2020-04-29 | 2.88 | 3.14 | — | 3.1 | 0.014 | 0.88 | 0.0 | 0.06 | 12.47 | 0.01 | 2.203 | 4.22 | 0.00 | 0.1 | 99.9 | 0.0 | -0.06 | 0.51 | 0.72 | 2.95 | 3.1 | 0.004 | 0.56 | 0.0 | 0.04 | 17.28 | 0.00 | 2.019 | 6.42 | 1.09 | 2.4 | 97.6 | 0.0 | 1.11 | 1.32 | 0.69 | 0.88 | 4.13 | 42671 | 2729 | 34 | 0 | 0 | 14 | 21361 | logfile |
✔ | 7EEi | 31077 | 2022-12-12 | 2021-03-18 | 3.6 | 3.44 | — | 3.4 | 0.006 | 1.09 | 0.0 | 0.06 | 13.71 | 0.01 | 1.975 | 5.14 | 0.00 | 0.1 | 99.9 | 0.0 | -1.90 | 0.77 | 0.77 | 1.99 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 15.17 | 0.00 | 2.168 | 8.05 | 0.24 | 5.4 | 94.6 | 0.0 | 0.13 | 1.23 | 0.80 | 0.80 | 2.13 | 9825 | 1400 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PLZ | 13507 | 2022-12-18 | 2021-09-01 | 3.2 | 3.30 | 3.19 | 3.2 | 0.004 | 0.77 | 0.0 | 0.05 | 14.63 | 0.01 | 1.198 | 5.79 | 0.00 | 0.1 | 99.9 | 0.0 | -1.13 | 0.88 | 0.84 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23278 | 2887 | 10 | 0 | 12 | 0 | 0 | logfile |
✔ | 7UiX | 26556 | 2022-12-15 | 2022-03-29 | 3.24 | 3.26 | — | 3.3 | 0.004 | 0.79 | 0.0 | 0.04 | 14.12 | 0.00 | 2.013 | 3.01 | 0.02 | 0.1 | 99.9 | 0.0 | -0.81 | 0.62 | 0.80 | 2.80 | 3.3 | 0.012 | 0.73 | 0.0 | 0.04 | 16.80 | 0.01 | 1.716 | 9.98 | 0.25 | 3.5 | 96.5 | 0.0 | 0.10 | 0.83 | 0.63 | 0.85 | 2.86 | 76307 | 4820 | 20 | 0 | 23 | 0 | 38286 | logfile |
✔ | 7PLU | 13502 | 2022-12-15 | 2021-09-01 | 3.2 | 3.11 | 3.17 | 3.0 | 0.005 | 0.85 | 7.0 | 0.05 | 14.66 | 0.01 | 1.314 | 5.34 | 0.04 | 0.1 | 99.9 | 0.0 | -1.57 | 0.89 | 0.82 | 3.39 | 3.0 | 0.003 | 0.64 | 3.0 | 0.04 | 15.74 | 0.00 | 1.930 | 8.56 | 0.20 | 1.6 | 98.4 | 0.0 | 1.18 | 1.28 | 0.91 | 0.87 | 2.55 | 23288 | 2906 | 13 | 0 | 9 | 0 | 0 | logfile |
✔ | 7U2B | 26311 | 2022-12-11 | 2022-02-23 | 4.1 | 4.26 | — | 4.2 | 0.009 | 0.96 | 0.0 | 0.05 | 14.98 | 0.00 | 1.936 | 7.14 | 0.15 | 0.1 | 99.9 | 0.0 | 2.20 | 0.72 | 0.71 | — | 4.2 | 0.003 | 0.61 | 0.0 | 0.04 | 15.25 | 0.00 | 2.119 | 9.21 | 0.00 | 1.9 | 98.1 | 0.0 | 0.77 | 1.83 | 0.78 | 0.79 | — | 7316 | 780 | 5 | 53 | 2 | 0 | 0 | logfile |
✔ | 7UiZ | 26558 | 2022-12-15 | 2022-03-29 | 3.24 | 3.45 | — | 3.4 | 0.004 | 0.75 | 0.0 | 0.05 | 13.43 | 0.00 | 2.014 | 2.86 | 0.00 | 0.1 | 99.9 | 0.0 | -1.03 | 0.60 | 0.81 | 2.98 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 16.80 | 0.00 | 1.819 | 9.75 | 0.22 | 3.0 | 97.0 | 0.0 | 0.13 | 0.92 | 0.60 | 0.85 | 3.03 | 76521 | 4837 | 20 | 0 | 22 | 0 | 38390 | logfile |
✔ | 7PME | 13530 | 2022-12-15 | 2021-09-02 | 2.9 | 3.93 | 2.92 | 3.1 | 0.005 | 0.83 | 6.0 | 0.05 | 14.88 | 0.01 | 1.313 | 4.94 | 0.08 | 0.1 | 99.9 | 0.0 | -1.26 | 0.93 | 0.86 | 3.45 | 3.1 | 0.002 | 0.65 | 3.0 | 0.04 | 15.60 | 0.00 | 2.031 | 7.13 | 0.93 | 1.7 | 98.3 | 0.0 | 1.61 | 0.63 | 0.94 | 0.88 | 2.95 | 23370 | 2906 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 6PoS | 20418 | 2022-12-11 | 2019-07-05 | 4.12 | 4.39 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 11.58 | 0.01 | 2.116 | 2.48 | 0.00 | 0.1 | 99.9 | 0.0 | -2.43 | 0.80 | 0.77 | — | 4.2 | 0.003 | 0.56 | 0.0 | 0.04 | 13.04 | 0.00 | 1.941 | 10.10 | 0.07 | 3.5 | 96.5 | 0.0 | -0.16 | 1.03 | 0.82 | 0.80 | — | 53503 | 3425 | 20 | 0 | 13 | 0 | 26853 | logfile |
✔ | 7PMF | 13531 | 2022-12-12 | 2021-09-02 | 3.4 | 4.29 | 3.47 | 3.3 | 0.010 | 1.00 | 2.0 | 0.06 | 14.81 | 0.01 | 1.313 | 4.03 | 0.09 | 0.2 | 99.8 | 0.0 | -1.44 | 0.91 | 0.83 | 3.07 | 3.3 | 0.003 | 0.61 | 1.0 | 0.04 | 15.08 | 0.00 | 1.970 | 7.11 | 0.09 | 1.1 | 98.9 | 0.0 | 1.88 | 1.69 | 0.94 | 0.88 | 2.42 | 10125 | 1256 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMi | 13535 | 2022-12-12 | 2021-09-02 | 3.3 | 4.20 | 3.27 | 3.2 | 0.014 | 1.17 | 3.0 | 0.07 | 15.30 | 0.01 | 1.306 | 5.14 | 0.09 | 0.2 | 99.8 | 0.0 | -1.50 | 0.92 | 0.84 | 2.97 | 3.3 | 0.003 | 0.67 | 1.0 | 0.04 | 15.61 | 0.00 | 2.043 | 7.76 | 0.09 | 1.5 | 98.5 | 0.0 | 1.37 | 0.66 | 0.94 | 0.88 | 2.59 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMJ | 13536 | 2022-12-12 | 2021-09-02 | 3.4 | 4.31 | 3.37 | 3.3 | 0.010 | 1.11 | 2.0 | 0.06 | 15.32 | 0.01 | 1.310 | 6.69 | 0.09 | 0.2 | 99.8 | 0.0 | -1.97 | 0.90 | 0.82 | 3.01 | 3.3 | 0.003 | 0.62 | 1.0 | 0.04 | 15.56 | 0.00 | 1.948 | 8.14 | 0.09 | 1.6 | 98.4 | 0.0 | 1.83 | 0.72 | 0.93 | 0.86 | 2.59 | 10085 | 1251 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMH | 13533 | 2022-12-12 | 2021-09-02 | 3.4 | 4.28 | 3.26 | 3.3 | 0.009 | 1.01 | 3.0 | 0.06 | 14.97 | 0.01 | 1.310 | 4.26 | 0.09 | 0.2 | 99.8 | 0.0 | -1.51 | 0.91 | 0.83 | 3.35 | 3.3 | 0.003 | 0.62 | 1.0 | 0.04 | 15.49 | 0.00 | 2.050 | 7.24 | 0.09 | 1.3 | 98.7 | 0.0 | 1.75 | 1.28 | 0.94 | 0.88 | 2.80 | 10154 | 1259 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 7PLY | 13506 | 2022-12-18 | 2021-09-01 | 3.2 | 3.79 | 3.36 | 3.5 | 0.010 | 0.94 | 0.0 | 0.06 | 14.60 | 0.01 | 1.199 | 3.87 | 0.00 | 0.2 | 99.8 | 0.0 | -1.06 | 0.89 | 0.85 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10149 | 1258 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PMD | 13529 | 2022-12-12 | 2021-09-02 | 2.9 | 4.01 | 2.83 | 3.4 | 0.012 | 1.06 | 2.0 | 0.06 | 14.84 | 0.01 | 1.314 | 3.76 | 0.09 | 0.2 | 99.8 | 0.0 | -1.33 | 0.94 | 0.88 | 3.40 | 3.4 | 0.003 | 0.64 | 1.0 | 0.04 | 15.46 | 0.00 | 1.996 | 6.47 | 0.46 | 1.8 | 98.2 | 0.0 | 1.71 | 1.26 | 0.93 | 0.88 | 2.98 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMG | 13532 | 2022-12-12 | 2021-09-02 | 3.3 | 4.20 | 3.27 | 3.2 | 0.014 | 1.18 | 3.0 | 0.07 | 15.15 | 0.01 | 1.308 | 4.74 | 0.09 | 0.2 | 99.8 | 0.0 | -1.37 | 0.92 | 0.85 | 3.45 | 3.3 | 0.003 | 0.64 | 1.0 | 0.04 | 15.37 | 0.00 | 1.980 | 6.72 | 0.18 | 1.7 | 98.3 | 0.0 | 1.65 | 1.26 | 0.94 | 0.89 | 2.85 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMB | 13527 | 2022-12-12 | 2021-09-02 | 3.6 | 4.10 | 3.61 | 3.6 | 0.006 | 0.93 | 2.0 | 0.06 | 15.72 | 0.01 | 1.317 | 6.62 | 0.09 | 0.2 | 99.8 | 0.0 | -1.25 | 0.90 | 0.83 | 2.52 | 3.6 | 0.005 | 0.73 | 1.0 | 0.04 | 16.33 | 0.00 | 1.889 | 10.10 | 0.46 | 2.0 | 98.0 | 0.0 | 1.22 | 1.32 | 0.91 | 0.85 | 2.43 | 10113 | 1255 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 6XLA | 22237 | 2022-12-11 | 2020-06-28 | 3.1 | 3.41 | — | 3.3 | 0.005 | 0.65 | 0.0 | 0.04 | 19.84 | 0.00 | 2.276 | 3.56 | 0.00 | 0.2 | 99.8 | 0.0 | -2.59 | 0.78 | 0.84 | 3.37 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 20.69 | 0.00 | 2.128 | 4.91 | 0.41 | 3.0 | 97.0 | 0.0 | -0.29 | 1.32 | 0.79 | 0.86 | 3.00 | 5403 | 536 | 6 | 46 | 2 | 0 | 0 | logfile |