Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7PLY	13506	2022-04-05	2021-09-01	3.2	3.79	3.36	3.5	0.010	0.94	0.0	0.06	14.60	0.01	1.199	3.82	0.00	0.2	99.8	0.0	-1.06	0.89	0.85	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10149	1258	4	0	4	0	0	logfile
✔	7PMF	13531	2022-04-05	2021-09-02	3.4	4.29	3.47	3.3	0.010	1.00	2.0	0.06	14.79	0.01	1.313	3.78	0.09	0.2	99.8	0.0	-1.44	0.91	0.83	3.07	3.3	0.005	0.68	1.0	0.04	15.09	0.00	1.913	7.76	0.19	1.3	98.7	0.0	1.84	1.69	0.94	0.88	2.46	10125	1256	6	0	6	0	0	logfile
✔	6XLA	22237	2022-04-04	2020-06-28	3.1	3.41	—	3.3	0.005	0.65	0.0	0.04	19.84	0.00	2.276	3.37	0.00	0.2	99.8	0.0	-2.59	0.78	0.84	3.37	3.3	0.003	0.54	0.0	0.04	20.69	0.00	2.128	4.72	0.41	3.0	97.0	0.0	-0.29	1.32	0.79	0.86	3.00	5403	536	6	46	2	0	0	logfile
✘	6ZVJ	11458	2022-04-05	2020-07-24	3.8	3.00	—	3.1	0.010	1.33	7.0	0.07	17.39	0.01	1.731	5.46	1.39	0.2	99.8	0.0	-4.19	0.59	0.64	1.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115020	10127	55	1720	9	0	0	logfile
✘	7PM0	13508	2022-04-05	2021-09-01	3.6	3.89	3.65	3.6	0.005	0.83	0.0	0.05	14.98	0.01	1.200	4.90	0.00	0.2	99.8	0.0	-1.27	0.90	0.85	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10169	1261	3	0	4	0	0	logfile
✔	7PMA	13526	2022-04-05	2021-09-02	3.6	4.07	3.61	3.5	0.004	0.88	2.0	0.05	15.79	0.01	1.317	6.45	0.09	0.2	99.8	0.0	-1.07	0.90	0.82	2.92	3.5	0.003	0.71	1.0	0.04	15.44	0.00	1.997	9.30	0.19	1.9	98.1	0.0	1.65	1.29	0.91	0.85	2.39	10066	1249	6	0	5	0	0	logfile
✔	7PMB	13527	2022-04-05	2021-09-02	3.6	4.10	3.61	3.6	0.006	0.93	2.0	0.06	15.71	0.01	1.317	6.47	0.09	0.2	99.8	0.0	-1.25	0.90	0.83	2.52	3.7	0.003	0.70	1.0	0.04	16.29	0.00	1.973	9.10	0.00	2.1	97.9	0.0	1.44	1.32	0.90	0.85	2.24	10113	1255	6	0	5	0	0	logfile
✘	7PM1	13509	2022-04-05	2021-09-01	3.5	3.74	3.64	3.5	0.004	0.80	0.0	0.05	14.86	0.01	1.201	5.00	0.00	0.2	99.8	0.0	-1.54	0.89	0.84	3.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10169	1261	3	0	4	0	0	logfile
✔	7PMH	13533	2022-04-05	2021-09-02	3.4	4.28	3.26	3.3	0.009	1.01	3.0	0.06	14.96	0.01	1.310	4.17	0.09	0.2	99.8	0.0	-1.51	0.91	0.83	3.35	3.3	0.003	0.61	1.0	0.04	15.50	0.00	2.070	6.54	0.00	1.5	98.5	0.0	1.79	1.28	0.94	0.87	2.83	10154	1259	6	0	6	0	0	logfile
✔	7PMC	13528	2022-04-05	2021-09-02	3.7	4.09	3.62	3.5	0.008	1.07	2.0	0.06	16.10	0.01	1.317	7.05	0.09	0.2	99.8	0.0	-1.41	0.89	0.80	2.38	3.5	0.003	0.69	1.0	0.04	16.05	0.00	2.034	9.93	0.28	1.6	98.4	0.0	1.51	1.34	0.90	0.82	1.87	10139	1258	6	0	5	0	0	logfile
✔	7PMD	13529	2022-04-05	2021-09-02	2.9	4.01	2.83	3.4	0.012	1.06	2.0	0.06	14.82	0.01	1.314	3.61	0.09	0.2	99.8	0.0	-1.33	0.94	0.88	3.40	3.4	0.002	0.66	1.0	0.04	15.37	0.00	2.012	6.87	0.55	1.9	98.1	0.0	1.80	1.26	0.93	0.87	2.98	10189	1264	6	0	6	0	0	logfile
✔	7BES	12158	2022-04-04	2020-12-24	2.85	2.95	2.86	2.9	0.013	1.04	0.0	0.05	9.86	0.00	2.236	7.96	0.85	0.3	99.7	0.0	0.37	0.73	0.82	3.32	2.9	0.005	0.63	0.0	0.04	15.36	0.01	1.971	9.97	3.18	1.1	98.9	0.0	0.06	1.17	0.74	0.85	3.07	9446	1234	12	6	4	0	0	logfile
✔	7QHH	13972	2022-04-05	2021-12-12	3.6	3.51	3.48	3.6	0.014	1.83	0.0	0.09	12.10	0.01	2.546	3.73	0.19	0.3	99.6	0.1	-0.83	0.66	0.74	3.73	3.5	0.009	0.73	0.0	0.04	13.78	0.00	2.128	11.11	1.13	2.1	97.9	0.0	0.69	1.32	0.65	0.74	2.73	13626	1982	12	0	14	0	0	logfile
✔	7PM5	13521	2022-04-05	2021-09-02	3.1	3.88	3.26	3.5	0.005	0.83	2.0	0.05	14.72	0.01	1.317	4.50	0.09	0.3	99.7	0.0	-1.20	0.89	0.86	3.36	3.5	0.006	0.72	1.0	0.04	15.01	0.00	1.993	7.23	0.18	1.6	98.4	0.0	1.62	0.69	0.87	0.85	2.96	10171	1263	6	0	5	0	0	logfile
✔	7PM8	13524	2022-04-05	2021-09-02	3.5	3.91	3.50	3.4	0.004	0.88	2.0	0.05	15.56	0.01	1.316	6.40	0.09	0.3	99.7	0.0	-1.60	0.90	0.83	2.90	3.4	0.004	0.69	1.0	0.04	15.98	0.00	1.927	10.06	0.09	2.4	97.6	0.0	0.91	1.30	0.91	0.85	2.71	10149	1260	6	0	5	0	0	logfile
✘	6P6F	20261	2022-04-10	2019-06-03	4.5	4.71	4.50	4.6	0.017	1.59	0.0	0.09	9.24	0.01	2.442	0.18	0.00	0.3	99.7	0.0	0.73	0.71	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	159840	21060	120	0	0	0	0	logfile
✔	6C9i	7436	2022-04-06	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.81	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.47	0.0	0.04	15.04	0.00	2.229	5.30	0.12	0.0	100.0	0.0	3.66	2.42	0.73	0.90	3.62	23700	3087	24	0	0	0	0	logfile
✔	6MDo	9102	2022-04-09	2018-09-04	3.9	5.46	—	4.2	0.015	1.44	0.0	0.12	13.30	0.01	2.012	6.72	0.16	0.3	99.6	0.0	-3.28	0.79	0.68	0.38	4.2	0.005	0.72	0.0	0.08	13.76	0.00	1.781	20.24	0.41	7.9	92.1	0.0	-1.53	1.53	0.87	0.85	0.19	45373	2843	13	0	11	0	22858	logfile
✔	6U1X	20614	2022-04-08	2019-08-17	3.0	3.37	3.11	3.3	0.004	0.55	0.0	0.04	10.38	0.00	1.986	3.76	0.11	0.3	99.7	0.0	-3.08	0.67	0.81	4.07	3.3	0.004	0.59	0.0	0.04	14.55	0.00	1.804	7.22	1.07	5.2	94.8	0.0	-0.22	2.07	0.69	0.83	3.64	33529	2087	3	0	2	0	16768	logfile
✔	6T93	10408	2022-04-05	2019-10-25	3.49	4.10	—	3.7	0.014	1.15	0.0	0.06	27.23	0.01	2.435	0.78	0.00	0.3	99.7	0.0	0.78	0.87	0.85	2.94	3.7	0.004	0.67	0.0	0.03	28.09	0.00	2.207	12.22	0.48	2.4	97.6	0.0	2.49	1.86	0.87	0.87	2.02	12199	758	10	302	0	0	0	logfile

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