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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6L3V | 0827 | 2022-12-14 | 2019-10-15 | 2.63 | 2.90 | 2.72 | 2.9 | 0.009 | 0.92 | 0.0 | 0.04 | 17.16 | 0.01 | 2.218 | 1.00 | 5.45 | 0.5 | 99.5 | 0.0 | -5.00 | 0.57 | 0.85 | 3.54 | 2.9 | 0.002 | 0.58 | 0.0 | 0.03 | 16.60 | 0.00 | 2.191 | 1.81 | 1.72 | 0.5 | 99.5 | 0.0 | 2.35 | 3.59 | 0.58 | 0.87 | 2.87 | 19416 | 1206 | 12 | 0 | 6 | 0 | 9528 | logfile |
✔ | 7MQC | 23942 | 2022-12-15 | 2021-05-05 | 3.64 | 3.07 | 3.58 | 3.4 | 0.007 | 0.81 | 0.0 | 0.06 | 13.15 | 0.01 | 2.215 | 1.76 | 0.61 | 0.5 | 99.5 | 0.0 | 1.03 | 0.71 | 0.79 | 3.27 | 3.4 | 0.004 | 0.55 | 0.0 | 0.04 | 14.56 | 0.00 | 2.233 | 4.21 | 0.26 | 2.5 | 97.5 | 0.0 | 1.09 | 0.40 | 0.74 | 0.81 | 2.93 | 12556 | 1640 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 7MQB | 23941 | 2022-12-15 | 2021-05-05 | 3.25 | 3.29 | 3.22 | 3.3 | 0.007 | 0.72 | 0.0 | 0.05 | 13.00 | 0.00 | 2.302 | 3.12 | 0.66 | 0.5 | 99.5 | 0.0 | 1.28 | 0.81 | 0.86 | 4.28 | 3.3 | 0.003 | 0.48 | 0.0 | 0.04 | 14.47 | 0.00 | 2.141 | 4.03 | 0.82 | 2.5 | 97.5 | 0.0 | 1.13 | 0.37 | 0.82 | 0.89 | 4.88 | 12760 | 1640 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 7U2A | 26310 | 2022-12-11 | 2022-02-23 | 4.1 | 3.51 | — | 4.0 | 0.010 | 1.05 | 0.0 | 0.05 | 14.76 | 0.00 | 1.918 | 11.40 | 0.31 | 0.5 | 99.5 | 0.0 | 2.04 | 0.59 | 0.61 | — | 4.0 | 0.004 | 0.70 | 0.0 | 0.04 | 14.90 | 0.00 | 2.163 | 14.19 | 0.00 | 2.7 | 97.3 | 0.0 | 0.31 | 1.64 | 0.65 | 0.72 | — | 6855 | 761 | 5 | 38 | 2 | 0 | 0 | logfile |
✔ | 7YQD | 34024 | 2022-12-12 | 2022-08-06 | 3.4 | 3.67 | 3.38 | 3.7 | 0.012 | 1.46 | 7.0 | 0.10 | 13.65 | 0.00 | 2.335 | 4.80 | 7.63 | 0.5 | 99.5 | 0.0 | 6.20 | 0.79 | 0.85 | 0.96 | 3.7 | 0.004 | 0.62 | 0.0 | 0.04 | 16.29 | 0.00 | 2.277 | 8.43 | 1.13 | 1.4 | 98.6 | 0.0 | 4.30 | 0.67 | 0.78 | 0.84 | 1.16 | 10290 | 1330 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DEP | 27394 | 2022-12-11 | 2022-06-21 | 3.6 | 4.01 | 3.65 | 3.8 | 0.008 | 0.76 | 0.0 | 0.07 | 13.59 | 0.01 | 2.197 | 5.60 | 0.65 | 0.5 | 99.5 | 0.0 | 3.03 | 0.47 | 0.78 | 1.93 | 3.9 | 0.003 | 0.66 | 0.0 | 0.03 | 16.82 | 0.00 | 2.206 | 9.44 | 0.65 | 2.0 | 98.0 | 0.0 | 2.04 | 0.68 | 0.46 | 0.77 | 1.53 | 3223 | 398 | 1 | 0 | 4 | 0 | 0 | logfile |
✘ | 6T24 | 10366 | 2022-12-18 | 2019-10-07 | 3.7 | 3.44 | 3.63 | 3.6 | 0.019 | 1.72 | 0.0 | 0.09 | 12.31 | 0.01 | 1.162 | 2.91 | 0.00 | 0.5 | 99.5 | 0.0 | 0.74 | 0.68 | 0.80 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14910 | 1855 | 10 | 0 | 20 | 0 | 0 | logfile |
✔ | 6PP6 | 20420 | 2022-12-16 | 2019-07-05 | 4.28 | 4.54 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.04 | 11.88 | 0.00 | 2.179 | 3.17 | 0.00 | 0.6 | 99.4 | 0.0 | -1.13 | 0.79 | 0.78 | — | 4.3 | 0.003 | 0.56 | 0.0 | 0.04 | 12.53 | 0.00 | 1.940 | 11.13 | 0.06 | 3.2 | 96.8 | 0.0 | -0.78 | 1.51 | 0.81 | 0.81 | — | 32106 | 2062 | 13 | 0 | 12 | 0 | 16126 | logfile |
✔ | 6C9K | 7437 | 2022-12-20 | 2018-01-26 | 3.49 | 5.32 | — | 5.0 | 0.016 | 1.08 | 0.0 | 0.07 | 11.33 | 0.01 | 2.388 | 1.65 | 0.00 | 0.6 | 99.4 | 0.0 | 1.74 | 0.55 | 0.28 | 0.81 | 5.0 | 0.004 | 0.62 | 0.0 | 0.04 | 14.84 | 0.00 | 2.148 | 18.74 | 0.15 | 2.1 | 97.9 | 0.0 | 3.14 | 0.89 | 0.81 | 0.67 | -0.17 | 37632 | 4923 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NLL | 12465 | 2022-12-11 | 2021-02-22 | 2.89 | 3.42 | — | 3.2 | 0.005 | 0.56 | 0.0 | 0.26 | 10.85 | 0.00 | 2.255 | 7.02 | 0.00 | 0.6 | 99.4 | 0.0 | 1.34 | 0.80 | 0.82 | 3.17 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 15.08 | 0.00 | 2.184 | 8.88 | 3.64 | 2.3 | 97.5 | 0.2 | -0.18 | 1.58 | 0.82 | 0.87 | 3.39 | 5056 | 656 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7oHF | 12901 | 2022-12-18 | 2021-05-10 | 3.0 | 3.29 | 3.12 | 3.4 | 0.008 | 0.89 | 0.0 | 0.05 | 9.77 | 0.01 | 2.144 | 2.67 | 0.00 | 0.6 | 99.4 | 0.0 | -7.39 | 0.64 | 0.80 | 4.20 | 3.4 | 0.002 | 0.60 | 0.0 | 0.04 | 15.45 | 0.00 | 2.127 | 8.32 | 0.12 | 0.0 | 100.0 | 0.0 | -0.18 | 1.61 | 0.62 | 0.81 | 2.79 | 33576 | 4056 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PXM | 20521 | 2022-12-18 | 2019-07-26 | 2.1 | 2.33 | 2.32 | 2.4 | 0.008 | 0.71 | 0.0 | 0.04 | 16.03 | 0.00 | 2.392 | 1.60 | 0.00 | 0.6 | 99.4 | 0.0 | -3.44 | 0.79 | 0.89 | 5.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SHT | 10205 | 2022-12-19 | 2019-08-08 | 2.73 | 2.88 | 2.78 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 17.80 | 0.01 | 0.000 | 7.75 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | 2.8 | 0.005 | 0.60 | 0.0 | 0.04 | 19.58 | 0.00 | 0.000 | 4.99 | 2.24 | 1.6 | 98.1 | 0.3 | 4.81 | 1.76 | 0.72 | 0.85 | 2.07 | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✔ | 7QND | 14075 | 2022-12-13 | 2021-12-20 | 3.4 | 3.55 | — | 3.4 | 0.002 | 0.42 | 0.0 | 0.04 | 7.74 | 0.00 | 2.210 | 5.00 | 0.45 | 0.6 | 99.4 | 0.0 | 2.54 | 0.75 | 0.83 | 3.55 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 13.56 | 0.00 | 2.153 | 11.47 | 0.62 | 1.4 | 98.6 | 0.0 | 1.41 | 3.37 | 0.76 | 0.87 | 3.52 | 16810 | 1995 | 19 | 0 | 33 | 0 | 0 | logfile |
✔ | 3JAF | 6346 | 2022-12-13 | 2015-06-08 | 3.8 | 2.26 | — | 3.8 | 0.025 | 1.93 | 0.0 | 0.10 | 10.09 | 0.01 | 2.134 | 19.02 | 0.70 | 0.6 | 99.4 | 0.0 | -0.82 | 0.69 | 0.71 | 1.52 | 3.8 | 0.003 | 1.04 | 0.0 | 0.05 | 13.94 | 0.00 | 2.222 | 18.49 | 0.28 | 2.2 | 97.8 | 0.0 | 0.52 | 1.36 | 0.72 | 0.81 | 1.69 | 13865 | 1710 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 6WKY | 21813 | 2022-12-12 | 2020-04-17 | 4.2 | 4.29 | — | 4.1 | 0.006 | 0.74 | 0.0 | 0.05 | 16.88 | 0.00 | 2.366 | 8.91 | 0.00 | 0.6 | 99.4 | 0.0 | -5.20 | 0.76 | 0.88 | — | 4.1 | 0.004 | 0.94 | 0.0 | 0.05 | 15.75 | 0.00 | 2.311 | 20.60 | 0.00 | 0.2 | 99.8 | 0.0 | -1.99 | 1.44 | 0.75 | 0.86 | — | 9140 | 1160 | 40 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XLM | 22248 | 2022-12-16 | 2020-06-28 | 3.2 | 3.76 | — | 3.5 | 0.008 | 0.80 | 0.0 | 0.05 | 14.94 | 0.00 | 1.972 | 9.49 | 0.07 | 0.7 | 99.3 | 0.0 | -2.52 | 0.82 | 0.84 | 2.16 | 3.5 | 0.004 | 0.59 | 0.0 | 0.04 | 15.92 | 0.00 | 1.844 | 11.07 | 0.17 | 3.7 | 96.3 | 0.0 | 0.00 | 1.42 | 0.82 | 0.83 | 1.75 | 28244 | 3485 | 11 | 40 | 5 | 0 | 0 | logfile |
✔ | 7MVY | 24058 | 2022-12-15 | 2021-05-15 | 2.39 | 3.24 | 1.97 | 3.1 | 0.002 | 0.39 | 0.0 | 0.03 | 6.61 | 0.00 | 2.209 | 3.31 | 0.00 | 0.7 | 99.3 | 0.0 | -0.54 | 0.72 | 0.64 | 0.92 | 3.0 | 0.005 | 0.67 | 0.0 | 0.04 | 14.14 | 0.00 | 1.958 | 13.67 | 1.65 | 3.9 | 96.1 | 0.0 | 0.95 | 1.65 | 0.76 | 0.74 | 2.24 | 26555 | 1694 | 2 | 0 | 0 | 0 | 13337 | logfile |
✔ | 6WSG | 21892 | 2022-12-22 | 2020-04-30 | 3.16 | 3.73 | — | 3.5 | 0.011 | 0.83 | 0.0 | 0.05 | 13.35 | 0.01 | 1.970 | 3.31 | 0.04 | 0.7 | 99.3 | 0.0 | -1.08 | 0.76 | 0.73 | 3.52 | 3.5 | 0.003 | 0.49 | 0.0 | 0.04 | 14.78 | 0.00 | 1.797 | 6.76 | 0.11 | 2.7 | 97.3 | 0.0 | 0.93 | 0.63 | 0.76 | 0.81 | 2.99 | 52087 | 3334 | 26 | 0 | 9 | 7 | 26155 | logfile |
✔ | 7PBS | 13301 | 2022-12-16 | 2021-08-02 | 3.3 | 2.55 | — | 3.2 | 0.005 | 0.71 | 0.0 | 0.05 | 14.69 | 0.01 | 1.778 | 1.72 | 0.25 | 0.7 | 99.3 | 0.0 | -0.18 | 0.65 | 0.77 | 3.13 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 17.28 | 0.00 | 1.786 | 2.93 | 0.06 | 1.8 | 98.2 | 0.0 | 1.47 | 1.34 | 0.70 | 0.81 | 2.46 | 31328 | 1918 | 15 | 30 | 11 | 0 | 15439 | logfile |