Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6L3V	0827	2022-12-14	2019-10-15	2.63	2.90	2.72	2.9	0.009	0.92	0.0	0.04	17.16	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.002	0.58	0.0	0.03	16.60	0.00	2.191	1.81	1.72	0.5	99.5	0.0	2.35	3.59	0.58	0.87	2.87	19416	1206	12	0	6	0	9528	logfile
✔	7MQC	23942	2022-12-15	2021-05-05	3.64	3.07	3.58	3.4	0.007	0.81	0.0	0.06	13.15	0.01	2.215	1.76	0.61	0.5	99.5	0.0	1.03	0.71	0.79	3.27	3.4	0.004	0.55	0.0	0.04	14.56	0.00	2.233	4.21	0.26	2.5	97.5	0.0	1.09	0.40	0.74	0.81	2.93	12556	1640	16	16	0	0	0	logfile
✔	7MQB	23941	2022-12-15	2021-05-05	3.25	3.29	3.22	3.3	0.007	0.72	0.0	0.05	13.00	0.00	2.302	3.12	0.66	0.5	99.5	0.0	1.28	0.81	0.86	4.28	3.3	0.003	0.48	0.0	0.04	14.47	0.00	2.141	4.03	0.82	2.5	97.5	0.0	1.13	0.37	0.82	0.89	4.88	12760	1640	16	16	0	0	0	logfile
✔	7U2A	26310	2022-12-11	2022-02-23	4.1	3.51	—	4.0	0.010	1.05	0.0	0.05	14.76	0.00	1.918	11.40	0.31	0.5	99.5	0.0	2.04	0.59	0.61	—	4.0	0.004	0.70	0.0	0.04	14.90	0.00	2.163	14.19	0.00	2.7	97.3	0.0	0.31	1.64	0.65	0.72	—	6855	761	5	38	2	0	0	logfile
✔	7YQD	34024	2022-12-12	2022-08-06	3.4	3.67	3.38	3.7	0.012	1.46	7.0	0.10	13.65	0.00	2.335	4.80	7.63	0.5	99.5	0.0	6.20	0.79	0.85	0.96	3.7	0.004	0.62	0.0	0.04	16.29	0.00	2.277	8.43	1.13	1.4	98.6	0.0	4.30	0.67	0.78	0.84	1.16	10290	1330	7	0	0	0	0	logfile
✔	8DEP	27394	2022-12-11	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	13.59	0.01	2.197	5.60	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.66	0.0	0.03	16.82	0.00	2.206	9.44	0.65	2.0	98.0	0.0	2.04	0.68	0.46	0.77	1.53	3223	398	1	0	4	0	0	logfile
✘	6T24	10366	2022-12-18	2019-10-07	3.7	3.44	3.63	3.6	0.019	1.72	0.0	0.09	12.31	0.01	1.162	2.91	0.00	0.5	99.5	0.0	0.74	0.68	0.80	2.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14910	1855	10	0	20	0	0	logfile
✔	6PP6	20420	2022-12-16	2019-07-05	4.28	4.54	—	4.3	0.004	0.71	0.0	0.04	11.88	0.00	2.179	3.17	0.00	0.6	99.4	0.0	-1.13	0.79	0.78	—	4.3	0.003	0.56	0.0	0.04	12.53	0.00	1.940	11.13	0.06	3.2	96.8	0.0	-0.78	1.51	0.81	0.81	—	32106	2062	13	0	12	0	16126	logfile
✔	6C9K	7437	2022-12-20	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	1.65	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.004	0.62	0.0	0.04	14.84	0.00	2.148	18.74	0.15	2.1	97.9	0.0	3.14	0.89	0.81	0.67	-0.17	37632	4923	24	0	0	0	0	logfile
✔	7NLL	12465	2022-12-11	2021-02-22	2.89	3.42	—	3.2	0.005	0.56	0.0	0.26	10.85	0.00	2.255	7.02	0.00	0.6	99.4	0.0	1.34	0.80	0.82	3.17	3.1	0.003	0.63	0.0	0.04	15.08	0.00	2.184	8.88	3.64	2.3	97.5	0.2	-0.18	1.58	0.82	0.87	3.39	5056	656	6	0	2	0	0	logfile
✔	7oHF	12901	2022-12-18	2021-05-10	3.0	3.29	3.12	3.4	0.008	0.89	0.0	0.05	9.77	0.01	2.144	2.67	0.00	0.6	99.4	0.0	-7.39	0.64	0.80	4.20	3.4	0.002	0.60	0.0	0.04	15.45	0.00	2.127	8.32	0.12	0.0	100.0	0.0	-0.18	1.61	0.62	0.81	2.79	33576	4056	24	0	0	0	0	logfile
✔	6PXM	20521	2022-12-18	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32736	4080	24	0	0	0	0	logfile
✔	6SHT	10205	2022-12-19	2019-08-08	2.73	2.88	2.78	2.8	0.015	1.55	0.0	0.07	17.80	0.01	0.000	7.75	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.005	0.60	0.0	0.04	19.58	0.00	0.000	4.99	2.24	1.6	98.1	0.3	4.81	1.76	0.72	0.85	2.07	37152	4176	24	0	48	1728	0	logfile
✔	7QND	14075	2022-12-13	2021-12-20	3.4	3.55	—	3.4	0.002	0.42	0.0	0.04	7.74	0.00	2.210	5.00	0.45	0.6	99.4	0.0	2.54	0.75	0.83	3.55	3.4	0.003	0.66	0.0	0.04	13.56	0.00	2.153	11.47	0.62	1.4	98.6	0.0	1.41	3.37	0.76	0.87	3.52	16810	1995	19	0	33	0	0	logfile
✔	3JAF	6346	2022-12-13	2015-06-08	3.8	2.26	—	3.8	0.025	1.93	0.0	0.10	10.09	0.01	2.134	19.02	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.003	1.04	0.0	0.05	13.94	0.00	2.222	18.49	0.28	2.2	97.8	0.0	0.52	1.36	0.72	0.81	1.69	13865	1710	15	0	15	0	0	logfile
✔	6WKY	21813	2022-12-12	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.1	0.004	0.94	0.0	0.05	15.75	0.00	2.311	20.60	0.00	0.2	99.8	0.0	-1.99	1.44	0.75	0.86	—	9140	1160	40	0	0	0	0	logfile
✔	6XLM	22248	2022-12-16	2020-06-28	3.2	3.76	—	3.5	0.008	0.80	0.0	0.05	14.94	0.00	1.972	9.49	0.07	0.7	99.3	0.0	-2.52	0.82	0.84	2.16	3.5	0.004	0.59	0.0	0.04	15.92	0.00	1.844	11.07	0.17	3.7	96.3	0.0	0.00	1.42	0.82	0.83	1.75	28244	3485	11	40	5	0	0	logfile
✔	7MVY	24058	2022-12-15	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.31	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.005	0.67	0.0	0.04	14.14	0.00	1.958	13.67	1.65	3.9	96.1	0.0	0.95	1.65	0.76	0.74	2.24	26555	1694	2	0	0	0	13337	logfile
✔	6WSG	21892	2022-12-22	2020-04-30	3.16	3.73	—	3.5	0.011	0.83	0.0	0.05	13.35	0.01	1.970	3.31	0.04	0.7	99.3	0.0	-1.08	0.76	0.73	3.52	3.5	0.003	0.49	0.0	0.04	14.78	0.00	1.797	6.76	0.11	2.7	97.3	0.0	0.93	0.63	0.76	0.81	2.99	52087	3334	26	0	9	7	26155	logfile
✔	7PBS	13301	2022-12-16	2021-08-02	3.3	2.55	—	3.2	0.005	0.71	0.0	0.05	14.69	0.01	1.778	1.72	0.25	0.7	99.3	0.0	-0.18	0.65	0.77	3.13	3.2	0.003	0.54	0.0	0.04	17.28	0.00	1.786	2.93	0.06	1.8	98.2	0.0	1.47	1.34	0.70	0.81	2.46	31328	1918	15	30	11	0	15439	logfile

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