Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NLL	12465	2023-07-04	2021-02-22	2.89	3.42	—	3.2	0.003	0.55	0.0	0.26	10.85	0.00	2.255	7.02	0.00	0.6	99.4	0.0	1.34	0.80	0.82	3.17	3.1	0.003	0.65	0.0	0.04	14.88	0.00	2.220	8.36	3.07	2.3	97.5	0.2	-0.33	1.58	0.82	0.87	3.19	5056	656	6	0	2	0	0	logfile
✔	8F4X	28858	2023-07-15	2022-11-11	3.01	3.72	3.03	3.4	0.004	0.55	0.0	0.03	15.82	0.00	2.226	5.99	0.00	0.6	99.4	0.0	0.06	0.84	0.83	1.71	3.4	0.002	0.42	0.0	0.03	17.34	0.00	2.299	5.10	0.12	0.1	99.9	0.0	5.43	0.45	0.84	0.85	0.51	32760	4020	60	0	0	0	0	logfile
✔	7XNH	33315	2023-07-09	2022-04-28	3.1	2.98	2.73	2.9	0.006	1.12	0.0	0.05	13.57	0.01	2.144	6.68	0.61	0.6	99.4	0.0	-0.23	0.72	0.87	4.77	2.9	0.002	0.45	0.0	0.04	13.55	0.00	2.333	4.76	0.15	0.8	99.2	0.0	2.76	0.97	0.73	0.84	3.00	19224	2172	24	0	132	0	0	logfile
✔	7QND	14075	2023-07-08	2021-12-20	3.4	3.55	—	3.4	0.003	0.46	0.0	0.04	7.75	0.00	2.210	4.79	0.45	0.6	99.4	0.0	2.54	0.75	0.83	3.55	3.4	0.003	0.71	0.0	0.04	13.71	0.00	2.126	11.53	0.56	1.6	98.4	0.0	1.18	3.38	0.76	0.87	3.50	16810	1995	19	0	33	0	0	logfile
✔	6PXM	20521	2023-07-15	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.43	0.0	0.03	17.64	0.00	2.214	4.08	0.03	1.8	98.2	0.0	5.31	1.48	0.79	0.90	3.81	32736	4080	24	0	0	0	0	logfile
✔	8CY8	27070	2023-07-13	2022-05-23	2.94	3.19	3.01	3.2	0.011	0.79	0.0	0.06	12.77	0.01	2.171	3.51	0.00	0.6	99.4	0.0	1.60	0.74	0.87	4.77	3.2	0.002	0.51	0.0	0.04	15.62	0.00	2.156	4.38	1.06	1.2	98.8	0.0	2.15	0.92	0.72	0.87	3.60	28800	3744	23	0	12	0	0	logfile
✔	6C9K	7437	2023-07-17	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	0.77	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.003	0.58	0.0	0.04	14.68	0.00	2.172	14.08	0.15	1.7	98.3	0.0	3.68	0.87	0.81	0.66	-0.16	37632	4923	24	0	0	0	0	logfile
✔	6SHT	10205	2023-07-17	2019-08-08	2.73	2.88	2.75	2.8	0.015	1.55	0.0	0.07	19.28	0.01	0.000	7.75	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.002	0.53	0.0	0.04	19.52	0.00	0.000	5.30	1.95	1.7	97.9	0.4	5.47	1.48	0.71	0.84	1.97	37152	4176	24	0	48	1728	0	logfile
✔	6XLM	22248	2023-07-13	2020-06-28	3.2	3.76	—	3.5	0.008	0.80	0.0	0.05	14.94	0.00	1.972	9.42	0.07	0.7	99.3	0.0	-2.52	0.82	0.84	2.16	3.5	0.003	0.57	0.0	0.04	15.93	0.00	1.862	10.66	0.07	3.5	96.5	0.0	0.01	1.42	0.82	0.83	1.77	28244	3485	11	40	5	0	0	logfile
✔	7UGD	26487	2023-07-04	2022-03-24	2.95	3.61	2.95	3.5	0.002	0.45	0.0	0.04	11.38	0.00	2.005	2.21	0.00	0.7	99.3	0.0	0.34	0.49	0.84	3.05	3.5	0.004	0.58	0.0	0.04	14.29	0.00	2.225	3.80	0.31	0.2	99.8	0.0	2.52	0.45	0.49	0.85	2.12	3079	415	1	0	3	0	0	logfile
✔	6ZBL	11157	2023-07-17	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.002	0.46	0.0	0.03	15.45	0.00	2.035	3.28	0.00	1.0	99.0	0.0	4.27	1.71	0.88	0.82	1.00	39074	2326	4	0	0	0	19788	logfile
✔	7SQV	25396	2023-07-03	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	7MVY	24058	2023-07-12	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.28	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.004	0.62	0.0	0.04	14.21	0.00	1.966	12.50	1.86	4.0	96.0	0.0	1.26	1.65	0.76	0.75	2.15	26555	1694	2	0	0	0	13337	logfile
✔	7Y5G	33619	2023-07-03	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.53	0.0	0.04	15.35	0.00	2.030	5.10	0.38	1.0	99.0	0.0	1.53	0.65	0.65	0.75	0.28	4736	604	4	0	6	0	0	logfile
✔	6ZBJ	11156	2023-07-17	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.8	0.003	0.50	0.0	0.03	15.14	0.00	2.045	3.57	0.00	1.0	99.0	0.0	3.75	1.29	0.87	0.83	1.19	39212	2334	4	0	0	0	19864	logfile
✔	7UGJ	26489	2023-07-03	2022-03-24	2.81	3.45	2.86	3.2	0.002	0.50	0.0	0.04	9.70	0.00	2.285	3.79	0.00	0.7	99.3	0.0	2.01	0.54	0.89	3.90	3.3	0.003	0.61	0.0	0.04	13.16	0.00	2.201	5.69	2.22	1.0	99.0	0.0	2.83	0.57	0.51	0.86	1.70	3095	416	1	0	3	0	0	logfile
✔	8iD6	35358	2023-07-04	2023-02-12	2.8	2.99	2.85	3.0	0.004	0.67	0.0	0.05	11.40	0.01	2.180	7.91	0.00	0.7	99.3	0.0	0.86	0.68	0.81	3.66	3.0	0.002	0.58	0.0	0.04	14.24	0.00	2.134	4.79	1.52	2.1	97.9	0.0	1.31	0.52	0.67	0.83	3.38	8727	1139	6	0	1	0	0	logfile
✔	7UGV	26497	2023-07-04	2022-03-25	2.94	3.59	2.94	3.4	0.003	0.57	0.0	0.04	9.13	0.00	2.111	3.29	0.00	0.7	99.3	0.0	2.34	0.50	0.85	4.24	3.4	0.003	0.57	0.0	0.04	12.67	0.00	2.212	5.33	0.93	0.7	99.3	0.0	3.03	1.30	0.51	0.87	2.79	3107	418	1	0	3	0	0	logfile
✔	8B1R	15803	2023-07-10	2022-09-12	3.2	3.47	3.13	3.3	0.004	0.63	0.0	0.05	9.18	0.00	2.210	7.58	0.34	0.7	99.3	0.0	0.06	0.84	0.87	2.66	3.3	0.004	0.55	0.0	0.04	13.23	0.00	2.221	5.19	0.17	1.6	98.4	0.0	2.27	0.64	0.86	0.90	2.75	21953	2746	6	0	1	0	0	logfile
✘	8F0A	28754	2023-07-09	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18060	1212	9	0	0	0	9189	logfile

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