Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6VWK	21419	2023-04-20	2020-02-20	3.3	3.56	—	3.5	0.010	1.30	4.0	0.07	12.71	0.01	2.355	0.98	0.59	0.9	99.1	0.0	-0.35	0.65	0.83	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8423	1133	13	0	0	0	0	logfile
✔	8CT3	26979	2023-04-21	2022-05-13	3.3	2.97	3.21	3.1	0.002	0.48	0.0	0.04	10.68	0.01	2.215	4.29	0.63	0.9	99.1	0.0	1.87	0.51	0.72	2.16	3.0	0.004	0.62	0.0	0.04	14.29	0.00	2.152	8.04	0.63	2.0	98.0	0.0	1.40	0.85	0.52	0.78	2.35	8964	1114	6	0	8	0	0	logfile
✔	6ZBD	11151	2023-04-25	2020-06-08	3.21	3.97	3.37	3.6	0.010	1.19	0.0	0.08	13.68	0.01	2.466	0.97	0.00	0.9	99.1	0.0	0.87	0.85	0.78	1.78	3.6	0.002	0.50	0.0	0.03	15.08	0.00	2.000	5.02	0.27	1.5	98.5	0.0	3.93	2.62	0.86	0.80	1.77	19519	1159	4	0	0	0	9896	logfile
✔	8DPG	27634	2023-04-20	2022-07-15	3.6	2.36	3.57	2.2	0.002	0.49	0.0	0.04	9.47	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.1	0.002	0.54	0.0	0.04	13.50	0.00	2.090	5.22	0.12	2.2	97.8	0.0	1.05	1.11	0.76	0.72	1.84	8162	1093	6	0	2	0	0	logfile
✔	7UBB	26437	2023-04-20	2022-03-14	4.5	5.42	4.95	5.3	0.002	0.68	0.0	0.04	14.32	0.00	2.231	14.38	0.00	0.9	99.1	0.0	-1.04	0.40	0.59	—	5.3	0.002	0.60	0.0	0.04	14.50	0.00	2.283	8.83	0.00	1.8	98.2	0.0	-1.07	0.80	0.37	0.54	—	7448	896	8	0	0	0	0	logfile
✔	7TT5	26111	2023-04-23	2022-01-31	4.3	4.48	—	4.4	0.004	0.69	0.0	0.04	10.02	0.01	2.033	4.14	0.00	0.9	99.1	0.0	1.26	0.65	0.70	—	4.3	0.004	0.59	0.0	0.04	12.22	0.00	1.862	9.68	0.00	3.4	96.6	0.0	0.38	1.20	0.69	0.77	—	14255	928	5	0	0	0	6938	logfile
✔	6YE4	10789	2023-04-21	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.49	0.0	0.03	16.29	0.00	2.376	4.96	0.00	2.4	97.6	0.0	3.87	0.94	0.65	0.85	1.22	9140	1180	10	0	5	0	0	logfile
✔	7P5M	13201	2023-04-20	2021-07-14	3.92	3.54	3.67	3.7	0.003	0.60	0.0	0.04	13.68	0.00	2.209	8.88	0.00	0.9	99.1	0.0	3.52	0.51	0.77	1.01	3.7	0.003	0.63	0.0	0.04	16.50	0.00	2.182	9.28	0.31	1.2	98.8	0.0	3.94	0.44	0.52	0.77	1.01	6204	788	8	0	12	0	0	logfile
✔	8G86	29837	2023-04-22	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.67	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.4	0.005	0.63	0.0	0.04	29.42	0.00	2.112	7.41	2.06	1.5	98.5	0.0	2.50	0.92	0.70	0.85	4.86	11972	759	10	290	0	0	0	logfile
✘	6VL6	21231	2023-04-25	2020-01-22	4.6	5.00	4.54	4.6	0.019	1.46	0.0	0.09	11.38	0.01	2.431	0.59	0.00	0.9	99.1	0.0	0.45	0.87	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21504	2640	24	0	0	0	0	logfile
✔	7VX4	32168	2023-04-20	2021-11-12	3.9	4.09	—	4.2	0.003	0.63	0.0	0.04	8.49	0.00	2.082	7.58	0.14	0.9	99.0	0.1	-2.27	0.58	0.69	2.52	4.1	0.003	0.68	0.0	0.04	14.94	0.00	2.139	10.97	0.57	2.0	98.0	0.0	0.31	0.92	0.64	0.77	1.77	6493	791	4	0	6	0	0	logfile
✔	3JAE	6345	2023-04-22	2015-06-08	3.9	2.88	—	3.5	0.006	1.26	0.0	0.05	9.27	0.01	2.202	13.69	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.87	0.0	0.04	13.61	0.00	2.157	15.62	0.16	2.8	97.2	0.0	0.08	1.49	0.72	0.82	1.59	12825	1690	10	0	10	0	0	logfile
✔	7QN6	14068	2023-04-24	2021-12-20	2.9	2.96	—	2.9	0.003	0.46	0.0	0.04	10.05	0.00	2.205	5.05	0.39	0.9	99.1	0.0	2.50	0.74	0.86	4.53	2.8	0.003	0.65	0.0	0.04	15.36	0.00	2.078	9.03	2.02	1.6	98.4	0.0	1.64	1.47	0.76	0.90	4.38	16821	1995	20	0	32	0	0	logfile
✔	7EG6	31106	2023-04-22	2021-03-24	3.1	3.55	—	3.2	0.007	0.73	0.0	0.04	27.64	0.01	2.328	1.56	0.00	0.9	99.1	0.0	-1.78	0.88	0.86	3.75	3.2	0.004	0.55	0.0	0.03	28.24	0.00	2.190	5.69	0.16	1.7	98.3	0.0	3.31	1.16	0.89	0.88	2.59	12118	779	11	292	0	0	0	logfile
✔	7ZDi	14650	2023-04-21	2022-03-29	2.9	3.06	2.82	3.1	0.013	2.74	0.0	0.04	16.49	0.01	2.378	3.63	0.00	0.9	99.1	0.0	1.10	0.64	0.84	5.30	3.1	0.005	1.48	0.0	0.04	16.61	0.00	2.159	5.01	0.37	1.0	99.0	0.0	3.01	0.30	0.69	0.87	4.42	10284	976	38	0	42	0	0	logfile
✔	7RZS	24776	2023-04-19	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.42	0.0	0.04	16.16	0.00	2.327	4.66	0.35	0.0	100.0	0.0	5.95	1.19	0.79	0.82	1.19	2445	324	6	0	0	0	0	logfile
✔	7XNV	33327	2023-04-24	2022-04-29	3.4	3.18	3.11	3.2	0.005	1.07	0.0	0.05	16.87	0.00	2.213	7.73	0.90	1.0	98.4	0.6	0.24	0.69	0.85	2.90	3.2	0.003	0.48	0.0	0.04	16.78	0.00	2.243	5.32	0.21	1.1	98.9	0.0	2.46	0.40	0.70	0.88	2.37	18378	2088	24	0	114	0	0	logfile
✔	7KGG	22869	2023-04-26	2020-10-16	2.97	2.88	—	2.9	0.006	0.92	3.0	0.05	14.03	0.01	2.108	4.66	1.09	1.0	99.0	0.0	2.20	0.71	0.81	2.31	2.9	0.004	0.61	0.0	0.04	17.14	0.00	2.158	6.31	2.03	1.4	98.6	0.0	1.43	1.16	0.73	0.85	2.19	23677	3060	6	0	9	0	0	logfile
✔	6TKo	10515	2023-04-20	2019-11-28	3.3	3.40	3.21	3.6	0.005	0.51	0.0	0.04	12.09	0.00	2.079	2.87	0.23	1.0	99.0	0.0	-2.07	0.71	0.73	2.06	3.5	0.004	0.69	0.0	0.04	14.86	0.00	2.042	14.62	0.35	2.5	97.5	0.0	0.12	1.74	0.76	0.80	2.55	8085	1052	5	0	1	0	0	logfile
✔	8G88	29843	2023-04-23	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	28.10	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.006	0.68	0.0	0.04	29.42	0.00	2.075	29.38	0.00	2.5	97.5	0.0	1.55	2.54	0.91	0.81	—	13995	891	11	336	0	0	0	logfile

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