Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5Y5Y	6811	2021-10-06	2017-08-10	4.7	4.66	—	4.6	0.027	2.87	128.0	0.17	18.51	0.03	2.246	4.38	9.44	16.3	75.1	8.6	-5.44	0.70	0.77	—	4.6	0.004	0.88	0.0	0.04	14.87	0.01	2.084	14.26	0.03	8.3	91.2	0.4	-1.06	1.79	0.69	0.81	—	32159	4164	15	0	2	0	0	logfile
✔	3J9Q	6270	2021-10-07	2015-02-17	3.5	3.51	—	3.5	0.008	1.16	0.0	0.06	14.05	0.00	2.284	4.53	8.68	19.1	75.1	5.8	-5.24	0.60	0.82	2.71	3.5	0.004	0.84	0.0	0.05	16.24	0.01	2.059	14.50	0.69	10.6	87.7	1.7	-1.83	1.45	0.61	0.82	2.55	99648	13224	48	0	0	0	0	logfile
✔	5iPK	8100	2021-10-17	2016-03-09	3.7	3.79	—	3.7	0.011	1.34	0.0	0.06	11.53	0.01	2.067	31.05	0.45	21.6	75.8	2.6	-4.98	0.77	0.76	2.94	3.7	0.004	1.13	0.0	0.05	16.36	0.01	2.057	20.65	0.70	21.9	75.8	2.4	-4.60	0.84	0.77	0.83	2.32	240540	30000	60	0	0	0	0	logfile
✔	6TGC	10498	2021-10-07	2019-11-15	4.1	4.96	—	4.1	0.016	1.86	2.0	0.08	20.20	0.01	1.835	97.73	15.44	22.0	76.1	1.9	-5.63	0.71	0.56	—	3.9	0.007	0.93	1.0	0.05	14.29	0.01	1.611	24.34	0.17	7.5	92.3	0.2	-1.02	1.48	0.72	0.55	—	33282	3806	6	0	808	0	0	logfile
✔	6H3J	0134	2021-10-04	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.22	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.002	0.59	0.0	0.04	13.50	0.00	1.935	54.13	0.23	16.1	83.9	0.0	-5.01	2.69	0.77	0.85	2.73	20301	2511	3	0	0	0	212	logfile
✔	6LYU	30018	2021-10-03	2020-02-15	4.2	4.46	—	4.2	0.009	1.16	6.0	0.06	15.38	0.01	1.986	55.11	1.18	23.1	76.2	0.7	-6.16	0.86	0.81	—	4.2	0.006	0.91	0.0	0.05	14.04	0.01	2.033	33.91	0.08	13.6	86.3	0.1	-2.96	0.89	0.86	0.80	—	11118	1430	5	0	0	0	0	logfile
✔	5JUS	6645	2021-10-10	2016-05-10	4.2	5.00	—	4.0	0.023	1.30	1.0	0.15	17.16	0.01	1.620	33.71	9.01	18.0	76.3	5.7	-6.17	0.72	0.46	—	3.3	0.003	0.72	0.0	0.04	16.85	0.01	0.206	26.73	0.01	10.9	88.3	0.8	-3.24	1.39	0.81	0.68	—	212680	12374	84	5568	2	0	0	logfile
✔	7NNH	12477	2021-10-03	2021-02-24	4.0	5.15	—	4.2	0.004	1.27	0.0	0.05	15.82	0.01	2.066	34.11	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.3	0.004	1.13	0.0	0.05	17.20	0.01	2.132	27.61	0.34	19.2	80.5	0.3	-2.80	1.21	0.75	0.79	—	5299	637	1	0	0	0	0	logfile
✔	7BW7	30229	2021-10-03	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	39.44	0.00	23.4	76.6	0.0	-5.62	0.73	0.68	—	4.4	0.004	0.82	0.0	0.05	14.93	0.01	2.175	15.71	0.00	10.0	90.0	0.0	-3.69	1.61	0.70	0.61	—	8824	1091	3	0	0	0	0	logfile
✔	7M62	23687	2021-10-03	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.0	0.003	0.93	0.0	0.05	15.49	0.00	2.172	19.44	0.37	20.0	80.0	0.0	-4.84	2.84	0.56	0.63	2.79	2380	320	10	0	10	0	0	logfile
✘	6oF4	20042	2021-10-03	2019-03-28	3.2	2.71	—	3.6	0.010	1.19	0.0	0.06	15.12	0.01	2.091	11.17	2.54	19.6	76.8	3.5	-4.99	0.79	0.82	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10998	1422	4	0	0	0	0	logfile
✔	6TD6	10464	2021-10-04	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	16.37	0.01	1.777	53.22	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.003	0.66	0.0	0.04	15.09	0.00	1.919	16.68	0.00	10.6	89.4	0.0	-0.75	1.47	0.59	0.69	—	15680	982	4	0	3	0	7766	logfile
✘	4UY8	2773	2021-10-07	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	11.91	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92995	3468	47	3049	144	439	8	logfile
✔	5HX2	8064	2021-10-04	2016-01-29	3.8	3.23	—	3.8	0.007	1.19	12.0	0.06	10.99	0.01	0.951	39.77	0.75	19.6	76.9	3.6	-5.39	0.65	0.66	2.67	3.7	0.009	1.17	4.0	0.05	14.80	0.01	1.704	23.70	0.21	21.6	75.8	2.6	-4.38	0.74	0.71	0.80	2.00	171672	25134	54	0	0	0	0	logfile
✔	5ND4	3622	2021-10-03	2017-03-07	4.4	5.55	—	5.5	0.015	1.50	11.0	0.21	21.64	0.01	1.678	25.87	15.57	14.5	77.1	8.3	-4.90	0.37	0.37	—	5.5	0.005	0.96	0.0	0.05	15.48	0.01	1.190	33.35	0.00	7.7	91.9	0.3	-1.77	3.64	0.49	0.75	—	9435	1175	6	1	6	0	0	logfile
✔	3J7Z	6057	2021-10-06	2014-08-27	3.9	3.80	—	3.9	0.009	1.42	5.0	0.10	15.56	0.01	1.426	11.23	10.91	16.3	77.2	6.5	-5.00	0.75	0.70	0.71	3.8	0.006	0.81	0.0	0.04	15.99	0.01	1.516	16.66	0.47	12.1	85.9	2.1	-3.01	1.90	0.79	0.81	0.90	90700	3453	36	2975	1	0	0	logfile
✔	6HV8	0287	2021-10-03	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	8.91	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.004	0.88	0.0	0.05	12.90	0.00	2.099	19.53	0.00	17.1	82.9	0.0	-2.93	1.51	0.75	0.72	—	9206	1184	2	0	2	0	0	logfile
✔	7CN9	30419	2021-10-05	2020-07-30	4.7	4.78	—	4.7	0.010	1.16	0.0	0.07	15.31	0.01	1.927	46.00	2.39	21.4	77.5	1.1	-5.89	0.53	0.74	—	4.7	0.003	0.79	0.0	0.05	13.26	0.01	2.109	17.62	0.00	11.3	88.6	0.1	-2.91	1.41	0.50	0.71	—	24052	3058	19	0	56	0	0	logfile
✔	6i0Y	0322	2021-10-07	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	12.64	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.006	0.87	0.0	0.04	16.53	0.01	1.055	23.86	1.60	14.4	83.6	2.0	-3.07	1.75	0.64	0.78	0.84	93619	3551	48	3049	144	439	0	logfile
✔	5o3L	3741	2021-10-03	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	9.60	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.004	0.81	0.0	0.05	15.40	0.01	1.930	15.58	0.78	15.1	84.9	0.0	-5.10	2.89	0.57	0.75	2.67	11360	730	10	0	0	0	5790	logfile

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