The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6Kio | 9996 | 2022-04-05 | 2019-07-19 | 3.94 | 4.22 | — | 3.9 | 0.035 | 3.43 | 48.0 | 0.22 | 17.77 | 0.04 | 2.231 | 11.01 | 8.39 | 18.6 | 74.1 | 7.3 | -6.45 | 0.56 | 0.66 | 1.26 | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 17.24 | 0.00 | 2.009 | 12.93 | 0.12 | 7.6 | 92.0 | 0.4 | -1.23 | 1.66 | 0.65 | 0.77 | 1.51 | 15091 | 968 | 3 | 0 | 0 | 0 | 7442 | logfile |
✔ | 5LY6 | 4118 | 2022-04-04 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.48 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 13.96 | 0.00 | 2.167 | 15.68 | 0.24 | 10.2 | 89.3 | 0.4 | -2.62 | 3.61 | 0.40 | 0.77 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2022-04-06 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.31 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.004 | 0.76 | 0.0 | 0.04 | 17.15 | 0.01 | 1.994 | 28.48 | 0.45 | 18.5 | 80.5 | 1.1 | -4.42 | 1.71 | 0.79 | 0.64 | 0.68 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 5Y5Y | 6811 | 2022-04-08 | 2017-08-10 | 4.7 | 4.66 | — | 4.6 | 0.027 | 2.87 | 128.0 | 0.17 | 18.51 | 0.03 | 2.246 | 4.69 | 9.44 | 16.3 | 75.1 | 8.6 | -5.44 | 0.70 | 0.77 | — | 4.6 | 0.007 | 1.01 | 0.0 | 0.05 | 15.19 | 0.01 | 2.040 | 19.21 | 0.00 | 10.8 | 88.8 | 0.5 | -1.68 | 1.75 | 0.70 | 0.82 | — | 32159 | 4164 | 15 | 0 | 2 | 0 | 0 | logfile |
✔ | 3J9Q | 6270 | 2022-04-09 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | 3.5 | 0.006 | 0.91 | 0.0 | 0.05 | 16.24 | 0.01 | 1.959 | 16.64 | 1.07 | 12.7 | 85.8 | 1.6 | -2.08 | 0.90 | 0.61 | 0.83 | 2.64 | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TGC | 10498 | 2022-04-09 | 2019-11-15 | 4.1 | 4.96 | — | 4.1 | 0.016 | 1.86 | 2.0 | 0.08 | 20.20 | 0.01 | 1.835 | 101.80 | 15.44 | 22.0 | 76.1 | 1.9 | -5.63 | 0.71 | 0.56 | — | 4.0 | 0.010 | 1.25 | 0.0 | 0.06 | 14.68 | 0.01 | 1.927 | 50.12 | 0.20 | 13.2 | 86.5 | 0.3 | -2.23 | 1.26 | 0.73 | 0.59 | — | 33282 | 3806 | 6 | 0 | 808 | 0 | 0 | logfile |
✔ | 7ASo | 11902 | 2022-04-06 | 2020-10-27 | 3.11 | 3.89 | — | 3.0 | 0.007 | 1.05 | 3.0 | 0.10 | 22.66 | 0.00 | 1.837 | 23.99 | 13.50 | 22.1 | 76.1 | 1.9 | -5.91 | 0.58 | 0.45 | 0.91 | 3.0 | 0.005 | 0.74 | 1.0 | 0.04 | 20.73 | 0.00 | 1.550 | 18.21 | 0.69 | 12.8 | 87.0 | 0.2 | -3.99 | 1.58 | 0.86 | 0.83 | 1.45 | 125530 | 4741 | 47 | 4249 | 0 | 0 | 0 | logfile |
✔ | 6H3J | 0134 | 2022-04-06 | 2018-07-18 | 3.7 | 3.83 | — | 3.7 | 0.007 | 0.87 | 0.0 | 0.05 | 10.17 | 0.00 | 2.025 | 43.38 | 0.05 | 23.8 | 76.2 | 0.0 | -6.63 | 0.77 | 0.85 | 3.89 | 3.7 | 0.005 | 0.65 | 0.0 | 0.04 | 13.39 | 0.00 | 1.860 | 56.20 | 0.32 | 21.3 | 78.7 | 0.0 | -4.95 | 2.68 | 0.78 | 0.86 | 2.86 | 20301 | 2511 | 3 | 0 | 0 | 0 | 212 | logfile |
✔ | 6LYU | 30018 | 2022-04-05 | 2020-02-15 | 4.2 | 4.46 | — | 4.2 | 0.009 | 1.16 | 6.0 | 0.06 | 15.38 | 0.01 | 1.986 | 56.77 | 1.18 | 23.1 | 76.2 | 0.7 | -6.16 | 0.86 | 0.81 | — | 4.2 | 0.005 | 0.83 | 0.0 | 0.04 | 14.02 | 0.01 | 2.039 | 28.08 | 0.00 | 13.6 | 86.2 | 0.1 | -2.93 | 0.81 | 0.86 | 0.80 | — | 11118 | 1430 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5JUS | 6645 | 2022-04-18 | 2016-05-10 | 4.2 | 5.00 | — | 4.0 | 0.023 | 1.30 | 1.0 | 0.15 | 17.16 | 0.01 | 1.620 | 34.15 | 9.01 | 18.0 | 76.3 | 5.7 | -6.17 | 0.72 | 0.45 | — | 3.4 | 0.006 | 0.88 | 1.0 | 0.05 | 16.62 | 0.01 | 1.740 | 27.36 | 0.01 | 12.5 | 86.6 | 0.9 | -4.12 | 1.06 | 0.81 | 0.70 | — | 212680 | 12374 | 84 | 5568 | 2 | 0 | 0 | logfile |
✔ | 7NNH | 12477 | 2022-04-04 | 2021-02-24 | 4.0 | 5.15 | — | 4.2 | 0.004 | 1.27 | 0.0 | 0.05 | 15.82 | 0.01 | 2.066 | 34.87 | 0.34 | 23.0 | 76.5 | 0.5 | -3.61 | 0.74 | 0.80 | — | 4.2 | 0.003 | 1.12 | 0.0 | 0.05 | 16.95 | 0.00 | 2.060 | 27.71 | 0.34 | 21.4 | 78.4 | 0.2 | -2.67 | 0.75 | 0.75 | 0.80 | — | 5299 | 637 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BW7 | 30229 | 2022-04-04 | 2020-04-13 | 4.1 | 4.55 | 4.28 | 4.4 | 0.008 | 1.06 | 0.0 | 0.06 | 16.20 | 0.01 | 2.050 | 40.07 | 0.00 | 23.4 | 76.6 | 0.0 | -5.62 | 0.73 | 0.67 | — | 4.4 | 0.004 | 0.82 | 0.0 | 0.05 | 15.22 | 0.00 | 2.112 | 22.19 | 0.10 | 15.8 | 84.2 | 0.0 | -3.98 | 0.72 | 0.71 | 0.66 | — | 8824 | 1091 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M62 | 23687 | 2022-04-04 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.007 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.3 | 0.003 | 0.99 | 0.0 | 0.05 | 15.87 | 0.00 | 2.105 | 21.17 | 0.00 | 22.7 | 77.3 | 0.0 | -4.56 | 2.11 | 0.57 | 0.65 | 3.17 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |
✘ | 6oF4 | 20042 | 2022-04-05 | 2019-03-28 | 3.2 | 2.71 | — | 3.6 | 0.010 | 1.19 | 0.0 | 0.06 | 15.12 | 0.01 | 2.091 | 11.76 | 2.54 | 19.6 | 76.8 | 3.5 | -4.99 | 0.79 | 0.82 | 1.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10998 | 1422 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TD6 | 10464 | 2022-04-05 | 2019-11-07 | 4.76 | 5.03 | — | 4.8 | 0.010 | 1.11 | 0.0 | 0.07 | 16.37 | 0.01 | 1.777 | 55.96 | 0.35 | 22.8 | 76.8 | 0.4 | -6.33 | 0.62 | 0.70 | — | 4.8 | 0.004 | 0.69 | 0.0 | 0.04 | 14.83 | 0.00 | 1.896 | 20.24 | 0.00 | 11.6 | 88.4 | 0.0 | -1.62 | 1.43 | 0.60 | 0.69 | — | 15680 | 982 | 4 | 0 | 3 | 0 | 7766 | logfile |
✔ | 4UY8 | 2773 | 2022-04-08 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 15.49 | 0.01 | 0.879 | 12.34 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.008 | 0.86 | 1.0 | 0.04 | 17.39 | 0.01 | 1.577 | 71.19 | 0.53 | 18.7 | 79.0 | 2.4 | -3.83 | 1.54 | 0.59 | 0.81 | 0.97 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 5HX2 | 8064 | 2022-04-12 | 2016-01-29 | 3.8 | 3.23 | — | 3.8 | 0.007 | 1.19 | 12.0 | 0.06 | 10.99 | 0.01 | 0.951 | 40.58 | 0.75 | 19.6 | 76.9 | 3.6 | -5.39 | 0.65 | 0.66 | 2.67 | 3.7 | 0.004 | 1.01 | 0.0 | 0.05 | 14.46 | 0.01 | 2.080 | 17.02 | 0.99 | 18.6 | 79.0 | 2.3 | -4.00 | 0.76 | 0.70 | 0.78 | 1.86 | 171672 | 25134 | 54 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ND4 | 3622 | 2022-04-04 | 2017-03-07 | 4.4 | 5.55 | — | 5.5 | 0.010 | 1.69 | 11.0 | 0.20 | 21.69 | 0.01 | 1.678 | 26.62 | 15.57 | 14.5 | 77.1 | 8.3 | -4.90 | 0.37 | 0.37 | — | 5.4 | 0.004 | 1.07 | 0.0 | 0.05 | 15.55 | 0.01 | 1.558 | 29.69 | 0.10 | 7.2 | 92.3 | 0.4 | -1.85 | 1.92 | 0.48 | 0.71 | — | 9435 | 1175 | 6 | 1 | 6 | 0 | 0 | logfile |
✔ | 3J7Z | 6057 | 2022-04-08 | 2014-08-27 | 3.9 | 3.80 | — | 3.9 | 0.009 | 1.42 | 5.0 | 0.10 | 15.56 | 0.01 | 1.426 | 11.65 | 10.91 | 16.3 | 77.2 | 6.5 | -5.00 | 0.75 | 0.70 | 0.71 | 3.8 | 0.006 | 0.81 | 1.0 | 0.05 | 15.74 | 0.01 | 1.573 | 16.80 | 0.32 | 12.7 | 85.3 | 2.0 | -3.35 | 1.78 | 0.79 | 0.80 | 0.92 | 90700 | 3453 | 36 | 2975 | 1 | 0 | 0 | logfile |
✔ | 6HV8 | 0287 | 2022-04-04 | 2018-10-10 | 4.4 | 4.51 | — | 4.4 | 0.009 | 1.62 | 2.0 | 0.08 | 10.20 | 0.01 | 1.472 | 8.97 | 1.31 | 22.1 | 77.3 | 0.6 | -4.84 | 0.74 | 0.72 | — | 4.4 | 0.003 | 0.84 | 0.0 | 0.05 | 12.81 | 0.00 | 2.114 | 14.80 | 0.00 | 13.7 | 86.3 | 0.0 | -2.66 | 1.01 | 0.74 | 0.71 | — | 9206 | 1184 | 2 | 0 | 2 | 0 | 0 | logfile |