Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FU8	4319	2022-11-29	2018-02-26	3.2	4.43	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	6N3B	9350	2022-11-29	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.005	0.87	0.0	0.04	16.51	0.01	2.102	26.34	1.51	13.2	86.8	0.0	-5.29	1.48	0.42	0.71	1.88	2735	385	10	0	0	0	0	logfile
✔	7XiZ	33213	2022-11-29	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.10	0.0	0.06	18.15	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.82	0.0	0.05	18.16	0.01	2.215	14.34	0.43	16.6	82.6	0.8	-3.64	1.53	0.37	0.73	1.52	2161	267	1	0	2	0	0	logfile
✘	7ETW	31303	2022-11-29	2021-05-14	4.1	4.06	—	4.0	0.008	1.00	1.0	0.07	13.39	0.01	1.417	16.29	1.36	11.6	86.4	1.9	-5.46	0.53	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4952	680	4	0	6	0	0	logfile
✔	7WRL	32732	2022-11-29	2022-01-27	3.51	3.69	—	3.6	0.006	1.03	0.0	0.06	14.71	0.01	2.289	5.84	0.00	13.4	86.6	0.0	-4.19	0.64	0.78	2.31	3.6	0.004	0.67	0.0	0.04	15.83	0.00	2.221	11.36	0.28	12.2	87.8	0.0	-3.33	0.53	0.63	0.78	2.78	3251	419	3	0	0	0	0	logfile
✔	7LC9	23270	2022-11-29	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.009	0.92	0.0	0.05	16.86	0.00	1.984	46.70	2.65	14.8	85.2	0.0	-3.60	0.67	0.70	0.81	0.10	3497	525	12	0	0	0	0	logfile
✔	6HRF	0260	2022-11-29	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	8.66	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.005	0.84	0.0	0.05	16.58	0.00	2.181	9.08	0.25	6.7	93.3	0.0	-3.41	3.72	0.37	0.78	3.35	3522	462	6	0	0	0	0	logfile
✔	7V4B	31706	2022-11-29	2021-08-12	3.1	3.04	—	3.1	0.006	0.60	0.0	0.05	14.55	0.00	2.375	15.32	0.00	13.2	86.8	0.0	-5.99	0.41	0.69	2.66	3.1	0.008	0.78	0.0	0.05	17.31	0.00	2.146	10.95	0.60	18.9	81.1	0.0	-4.89	0.56	0.41	0.69	2.54	3336	480	6	0	0	0	0	logfile
✔	7E0F	30931	2022-11-29	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.06	0.00	2.487	5.37	0.00	9.2	90.8	0.0	-3.48	0.60	0.40	0.81	3.91	2022	294	6	0	0	0	0	logfile
✔	7KU5	23034	2022-11-29	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.73	0.0	0.04	16.42	0.01	2.247	10.16	0.00	10.5	89.5	0.0	-1.80	1.30	0.25	0.68	2.01	750	88	1	0	4	0	0	logfile
✔	6TJo	10512	2022-11-29	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.80	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.006	0.88	0.0	0.05	13.23	0.00	2.284	10.02	0.35	11.1	88.9	0.0	-3.87	1.40	0.36	0.79	3.90	2439	321	3	0	0	0	0	logfile
✔	3J9E	6240	2022-11-29	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	21.30	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.004	0.86	0.0	0.04	17.74	0.00	2.228	10.46	0.46	7.4	91.7	1.0	0.84	1.22	0.75	0.85	3.56	4098	520	1	0	0	0	0	logfile
✔	6SSX	10307	2022-11-29	2019-09-09	2.98	3.11	—	3.1	0.008	0.94	0.0	0.07	14.94	0.00	2.424	6.14	4.26	12.6	87.4	0.0	-4.73	0.65	0.82	4.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4900	730	10	0	0	0	0	logfile
✔	6LNi	0931	2022-11-29	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4920	600	10	0	0	0	0	logfile
✔	6YJ5	10816	2022-11-29	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.49	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.005	0.74	0.0	0.05	15.34	0.01	2.238	10.30	0.00	12.2	87.8	0.0	-2.13	0.81	0.51	0.73	3.37	2061	306	1	0	0	0	0	logfile
✔	7RL4	24514	2022-11-29	2021-07-23	2.86	2.50	—	3.1	0.015	1.16	0.0	0.07	16.04	0.01	2.535	12.04	0.00	12.5	87.5	0.0	-4.62	0.39	0.82	4.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4620	680	20	0	0	0	0	logfile
✘	7WP1	32666	2022-11-29	2022-01-22	3.77	3.91	—	3.9	0.006	1.16	0.0	0.07	14.50	0.02	2.338	3.88	0.00	12.2	87.5	0.2	-5.40	0.64	0.78	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3305	423	4	0	2	0	0	logfile
✔	7WR8	32718	2022-11-29	2022-01-26	3.5	3.74	—	3.8	0.008	1.15	0.0	0.06	13.71	0.01	2.230	6.22	0.00	12.5	87.5	0.0	-3.48	0.51	0.78	3.43	3.8	0.004	0.69	0.0	0.05	15.49	0.00	2.142	12.28	0.00	9.3	90.7	0.0	-2.55	0.34	0.50	0.77	2.84	3286	417	4	0	3	0	0	logfile
✔	7V22	31634	2022-11-29	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.04	15.65	0.00	2.182	11.91	0.00	12.1	87.5	0.4	-2.40	0.56	0.54	0.80	3.45	1958	240	1	0	0	0	0	logfile
✔	6i52	4410	2022-11-29	2018-11-12	4.7	4.78	—	8.9	0.002	0.57	0.0	0.04	16.56	0.00	2.303	10.25	5.70	11.6	87.5	0.9	-4.07	0.73	0.54	—	8.7	0.003	0.81	0.0	0.05	17.91	0.00	2.225	19.43	0.00	10.1	89.2	0.7	-2.59	3.55	0.76	0.63	—	3856	432	4	20	0	0	0	logfile

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