Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Kio	9996	2023-02-21	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	11.01	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.72	0.0	0.04	17.10	0.00	1.991	10.48	0.24	7.1	92.5	0.4	-0.92	1.67	0.65	0.77	1.26	15091	968	3	0	0	0	7442	logfile
✔	5LY6	4118	2023-02-17	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	14.05	0.00	2.184	19.06	0.00	10.7	88.9	0.4	-2.62	2.58	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	5G2X	3331	2023-02-22	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.03	18.97	0.00	2.000	29.45	0.91	18.5	80.5	1.1	-5.04	2.32	0.80	0.65	0.86	19072	487	3	704	0	0	0	logfile
✘	8GWN	34317	2023-02-24	2022-09-17	3.38	3.97	3.47	3.7	0.015	1.23	0.0	0.06	18.41	0.01	1.979	38.61	14.07	23.5	75.0	1.5	-6.16	0.86	0.83	1.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21860	2655	12	52	9	0	0	logfile
✔	6LYU	30018	2023-02-20	2020-02-15	4.2	4.46	—	4.2	0.009	1.16	6.0	0.06	15.38	0.01	1.986	56.95	1.18	23.1	76.2	0.7	-6.16	0.86	0.81	—	4.2	0.003	0.77	0.0	0.04	13.81	0.00	2.066	21.38	0.00	10.8	89.1	0.1	-2.53	0.89	0.85	0.79	—	11118	1430	5	0	0	0	0	logfile
✔	6H3J	0134	2023-02-23	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.38	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.003	0.62	0.0	0.04	13.49	0.00	1.880	56.27	0.36	20.2	79.8	0.0	-5.27	2.68	0.77	0.86	2.92	20301	2511	3	0	0	0	212	logfile
✔	7NNH	12477	2023-02-17	2021-02-24	4.0	5.15	—	4.2	0.004	1.27	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.003	1.12	0.0	0.05	16.96	0.01	2.116	27.42	0.34	20.2	79.5	0.3	-2.65	0.71	0.74	0.79	—	5299	637	1	0	0	0	0	logfile
✔	7BW7	30229	2023-02-18	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.13	0.00	23.4	76.6	0.0	-5.62	0.73	0.67	—	4.4	0.003	0.79	0.0	0.05	15.12	0.00	2.151	18.52	0.00	13.1	86.9	0.0	-3.97	0.75	0.70	0.62	—	8824	1091	3	0	0	0	0	logfile
✔	7M62	23687	2023-02-16	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.2	0.006	1.03	0.0	0.06	15.73	0.00	2.059	31.10	2.22	26.0	74.0	0.0	-4.94	2.76	0.57	0.68	2.84	2380	320	10	0	10	0	0	logfile
✔	6TD6	10464	2023-02-21	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	16.37	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.003	0.69	0.0	0.04	14.88	0.00	1.903	18.97	0.00	10.5	89.5	0.0	-1.31	1.44	0.59	0.69	—	15680	982	4	0	3	0	7766	logfile
✔	6oF4	20042	2023-02-19	2019-03-28	3.2	2.71	—	3.6	0.010	1.19	0.0	0.06	15.12	0.01	2.091	11.76	2.54	19.6	76.8	3.5	-4.99	0.79	0.82	1.96	3.7	0.004	0.76	0.0	0.04	16.53	0.01	2.143	7.59	0.68	8.9	91.0	0.1	0.42	1.31	0.78	0.81	1.76	10998	1422	4	0	0	0	0	logfile
✔	7CN9	30419	2023-02-24	2020-07-30	4.7	4.78	—	4.7	0.010	1.16	0.0	0.07	15.31	0.01	1.927	47.45	2.39	21.4	77.5	1.1	-5.89	0.53	0.74	—	4.7	0.004	0.82	0.0	0.05	13.35	0.01	2.036	21.64	0.04	12.9	87.0	0.1	-3.11	1.38	0.51	0.72	—	24052	3058	19	0	56	0	0	logfile
✔	5o3L	3741	2023-02-20	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	9.60	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.004	0.78	0.0	0.05	15.54	0.01	1.937	16.37	0.78	13.9	86.1	0.0	-5.24	2.68	0.57	0.75	2.67	11360	730	10	0	0	0	5790	logfile
✔	7BW8	30230	2023-02-17	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.23	0.01	2.200	21.41	0.88	10.6	89.4	0.0	-3.01	2.07	0.68	0.63	0.53	6021	737	3	0	0	0	0	logfile
✔	6WHR	21673	2023-02-24	2020-04-08	3.99	4.51	—	4.3	0.015	1.22	0.0	0.07	15.42	0.01	1.968	30.78	2.94	21.2	78.0	0.8	-5.90	0.69	0.73	1.29	4.3	0.005	0.77	0.0	0.05	15.92	0.00	2.124	13.66	0.39	10.4	89.5	0.2	-1.91	0.52	0.77	0.83	1.07	23370	3166	10	0	14	0	0	logfile
✔	7SWN	25476	2023-02-17	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.003	0.82	0.0	0.05	13.82	0.01	2.261	21.52	0.00	11.3	88.7	0.0	-3.20	2.08	0.57	0.68	—	3283	422	3	0	0	0	0	logfile
✘	6H3i	0133	2023-02-23	2018-07-18	3.5	3.59	—	3.5	0.009	0.92	0.0	0.05	10.08	0.01	2.012	39.59	0.40	21.4	78.4	0.2	-5.64	0.78	0.86	4.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20599	2597	3	0	0	0	53	logfile
✔	7V1N	31628	2023-02-23	2021-08-05	3.2	3.33	—	3.2	0.013	1.21	4.0	0.07	19.76	0.01	1.973	28.50	16.75	20.1	78.9	1.0	-5.88	0.65	0.73	1.68	3.2	0.003	0.70	0.0	0.05	18.12	0.00	2.097	12.63	0.43	11.0	88.8	0.2	-2.89	0.64	0.65	0.74	1.83	19156	2403	2	0	0	0	0	logfile
✔	6SHS	10204	2023-02-18	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.64	0.0	0.05	12.90	0.00	2.248	6.00	0.00	16.4	83.6	0.0	-5.26	1.68	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	7N64	24193	2023-02-18	2021-06-07	4.2	3.94	—	3.9	0.009	1.04	0.0	0.06	15.15	0.01	2.157	36.86	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.006	0.88	0.0	0.05	14.10	0.01	2.055	26.51	0.13	16.7	83.3	0.0	-2.94	0.49	0.64	0.70	—	7189	906	7	0	7	0	0	logfile

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